BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031959
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EKJ|A Chain A, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|B Chain B, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|C Chain C, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|D Chain D, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|E Chain E, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|F Chain F, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|G Chain G, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|H Chain H, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
Length = 221
Score = 221 bits (563), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 104/150 (69%), Positives = 120/150 (80%)
Query: 1 MVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTA 60
+VRN+AN+VPPYDQ KY+G GAAIEYAVLHLKV NIVVIGHS CGGIKGL+S P +GT +
Sbjct: 72 VVRNVANLVPPYDQAKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYS 131
Query: 61 SDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNT 120
+DFIEEWVKI AK+KVK + D F E C +CEKEAVN SLGNLLTYPFVRE +V T
Sbjct: 132 TDFIEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVNKT 191
Query: 121 LALKGAHYDFVNGKFELWDLDFNILPSVSV 150
LALKG +YDFV G FELW L+F + + SV
Sbjct: 192 LALKGGYYDFVKGSFELWGLEFGLSSTFSV 221
>pdb|2A5V|A Chain A, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|B Chain B, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|C Chain C, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|D Chain D, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
Length = 213
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 22 AAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKE 81
+IEYAV L V IVV+GH CG + ++ ++GT ++ + V+ A S +
Sbjct: 91 GSIEYAVTVLNVPLIVVLGHDSCGAVNAALAAINDGTLPGGYVRDVVE--RVAPSVLLGR 148
Query: 82 CNDLSFEEQCKNCEKEAVNVSLGNLLTY-PFVRESVVKNTLALKGAHYDFVNGKFELWDL 140
+ LS + E+ V+ ++ L+ + E + +LA+ G Y +G+ L D
Sbjct: 149 RDGLS---RVDEFEQRHVHETVAILMARSSAISERIAGGSLAIVGVTYQLDDGRAVLRDH 205
Query: 141 DFNI 144
NI
Sbjct: 206 IGNI 209
>pdb|1YM3|A Chain A, Crystal Structure Of Carbonic Anhydrase Rv3588c From
Mycobacterium Tuberculosis
Length = 215
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 22 AAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKE 81
+IEYAV L V IVV+GH CG + ++ ++GT ++ + V+ A S +
Sbjct: 93 GSIEYAVTVLNVPLIVVLGHDSCGAVNAALAAINDGTLPGGYVRDVVE--RVAPSVLLGR 150
Query: 82 CNDLSFEEQCKNCEKEAVNVSLGNLLTY-PFVRESVVKNTLALKGAHYDFVNGKFELWDL 140
+ LS + E+ V+ ++ L+ + E + +LA+ G Y +G+ L D
Sbjct: 151 RDGLS---RVDEFEQRHVHETVAILMARSSAISERIAGGSLAIVGVTYQLDDGRAVLRDH 207
Query: 141 DFNI 144
NI
Sbjct: 208 IGNI 211
>pdb|3MF3|A Chain A, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|B Chain B, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|C Chain C, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|D Chain D, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|E Chain E, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|F Chain F, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
Length = 221
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 20/137 (14%)
Query: 3 RNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASD 62
RN+AN V D S ++YAV LK+E+I++ GH+ CGGI M+ D G
Sbjct: 64 RNVANQVIHTDFNCLS----VVQYAVDVLKIEHIIICGHTNCGGIHAAMADKDLG----- 114
Query: 63 FIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNT-- 120
I W+ K LS E++ K +NV+ Y R S+VK+
Sbjct: 115 LINNWLLHIRDIWFKHGHLLGKLSPEKRADMLTK--INVAEQ---VYNLGRTSIVKSAWE 169
Query: 121 ----LALKGAHYDFVNG 133
L+L G YD +G
Sbjct: 170 RGQKLSLHGWVYDVNDG 186
>pdb|3E3G|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3I|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|G Chain G, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|H Chain H, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|I Chain I, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|J Chain J, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|K Chain K, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|L Chain L, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
Length = 229
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 20/137 (14%)
Query: 3 RNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASD 62
RN+AN V D S ++YAV LK+E+I++ GH+ CGGI M+ D G
Sbjct: 64 RNVANQVIHTDFNCLS----VVQYAVDVLKIEHIIICGHTNCGGIHAAMADKDLG----- 114
Query: 63 FIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNT-- 120
I W+ K LS E++ K +NV+ Y R S+VK+
Sbjct: 115 LINNWLLHIRDIWFKHGHLLGKLSPEKRADMLTK--INVAEQ---VYNLGRTSIVKSAWE 169
Query: 121 ----LALKGAHYDFVNG 133
L+L G YD +G
Sbjct: 170 RGQKLSLHGWVYDVNDG 186
>pdb|2A8C|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|B Chain B, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|C Chain C, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|D Chain D, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|E Chain E, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|F Chain F, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8D|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|B Chain B, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|C Chain C, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|D Chain D, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|E Chain E, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|F Chain F, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
Length = 229
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 20/137 (14%)
Query: 3 RNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASD 62
RN+AN V D S ++YAV LK+E+I++ GH+ CGGI M+ D G
Sbjct: 64 RNVANQVIHTDFNCLS----VVQYAVDVLKIEHIIICGHTNCGGIHAAMADKDLG----- 114
Query: 63 FIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNT-- 120
I W+ K LS E++ K +NV+ Y R S+VK+
Sbjct: 115 LINNWLLHIRDIWFKHGHLLGKLSPEKRADMLTK--INVAEQ---VYNLGRTSIVKSAWE 169
Query: 121 ----LALKGAHYDFVNG 133
L+L G YD +G
Sbjct: 170 RGQKLSLHGWVYDVNDG 186
>pdb|3E2X|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E2X|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E31|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E31|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E3F|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant V47a With
100 Mm Bicarbonate
pdb|3E3F|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant V47a With
100 Mm Bicarbonate
Length = 229
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 20/137 (14%)
Query: 3 RNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASD 62
RN+AN V D S ++YAV LK+E+I++ GH+ CGGI M+ D G
Sbjct: 64 RNVANQVIHTDFNCLS----VVQYAVDVLKIEHIIICGHTNCGGIHAAMADKDLG----- 114
Query: 63 FIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNT-- 120
I W+ K LS E++ K +NV+ Y R S+VK+
Sbjct: 115 LINNWLLHIRDIWFKHGHLLGKLSPEKRADMLTK--INVAEQ---VYNLGRTSIVKSAWE 169
Query: 121 ----LALKGAHYDFVNG 133
L+L G YD +G
Sbjct: 170 RGQKLSLHGWVYDVNDG 186
>pdb|3E1V|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n
pdb|3E1V|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n
pdb|3E1W|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant D44n In 100
Mm Sodium Bicarbonate
pdb|3E1W|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant D44n In 100
Mm Sodium Bicarbonate
Length = 229
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 20/137 (14%)
Query: 3 RNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASD 62
RN+AN V D S ++YAV LK+E+I++ GH+ CGGI M+ D G
Sbjct: 64 RNVANQVIHTDFNCLS----VVQYAVDVLKIEHIIICGHTNCGGIHAAMADKDLG----- 114
Query: 63 FIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNT-- 120
I W+ K LS E++ K +NV+ Y R S+VK+
Sbjct: 115 LINNWLLHIRDIWFKHGHLLGKLSPEKRADMLTK--INVAEQ---VYNLGRTSIVKSAWE 169
Query: 121 ----LALKGAHYDFVNG 133
L+L G YD +G
Sbjct: 170 RGQKLSLHGWVYDVNDG 186
>pdb|3E24|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f
pdb|3E24|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f
Length = 229
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 20/137 (14%)
Query: 3 RNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASD 62
RN+AN V D S ++YAV LK+E+I++ GH+ CGGI M+ D G
Sbjct: 64 RNVANQVIHTDFNCLS----VVQYAVDVLKIEHIIICGHTNCGGIHAAMADKDLG----- 114
Query: 63 FIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNT-- 120
I W+ K LS E++ K +NV+ Y R S+VK+
Sbjct: 115 LINNWLLHIRDIWFKHGHLLGKLSPEKRADMLTK--INVAEQ---VYNLGRTSIVKSAWE 169
Query: 121 ----LALKGAHYDFVNG 133
L+L G YD +G
Sbjct: 170 RGQKLSLHGWVYDVNDG 186
>pdb|3QY1|A Chain A, 1.54a Resolution Crystal Structure Of A Beta-Carbonic
Anhydrase From Salmonella Enterica Subsp. Enterica
Serovar Typhimurium Str. Lt2
pdb|3QY1|B Chain B, 1.54a Resolution Crystal Structure Of A Beta-Carbonic
Anhydrase From Salmonella Enterica Subsp. Enterica
Serovar Typhimurium Str. Lt2
Length = 223
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 3 RNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNG 57
RN+AN+V D S ++YAV L+VE+I++ GHS CGGIK + P+ G
Sbjct: 67 RNVANLVIHTDLNCLS----VVQYAVDVLEVEHIIICGHSGCGGIKAAVENPELG 117
>pdb|3E28|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|C Chain C, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|D Chain D, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|E Chain E, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|F Chain F, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E2A|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2W|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
Length = 229
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 20/137 (14%)
Query: 3 RNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASD 62
RN+AN V D S ++YAV LK+E+I++ GH+ CGGI M+ D G
Sbjct: 64 RNVANQVIHTDFNCLS----VVQYAVDVLKIEHIIICGHTNCGGIHAAMADKDLG----- 114
Query: 63 FIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNT-- 120
I W+ K LS E++ K +NV+ Y R S+VK+
Sbjct: 115 LINNWLLHIRDIWFKHGHLLGKLSPEKRADMLTK--INVAEQ---VYNLGRTSIVKSAWE 169
Query: 121 ----LALKGAHYDFVNG 133
L+L G +D +G
Sbjct: 170 RGQKLSLHGWVFDVNDG 186
>pdb|2W3Q|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
Length = 243
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 3 RNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIP------DN 56
RN+AN P D + A + YA++++ V +++V+GH+ CGG P
Sbjct: 94 RNVANQFKPED----DSSQALLNYAIMNVGVTHVMVVGHTGCGGCIAAFDQPLPTEENPG 149
Query: 57 GTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVN 100
GT ++E +++ S + NDL +E K K VN
Sbjct: 150 GTPLVRYLEPIIRLKHSLPE--GSDVNDL-IKENVKMAVKNVVN 190
>pdb|2W3N|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
pdb|2W3N|B Chain B, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
pdb|2W3N|C Chain C, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
Length = 239
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 3 RNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIP------DN 56
RN+AN P D + A + YA++++ V +++V+GH+ CGG P
Sbjct: 90 RNVANQFKPED----DSSQALLNYAIMNVGVTHVMVVGHTGCGGCIAAFDQPLPTEENPG 145
Query: 57 GTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVN 100
GT ++E +++ S + NDL +E K K VN
Sbjct: 146 GTPLVRYLEPIIRLKHSLPE--GSDVNDL-IKENVKMAVKNVVN 186
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
pdb|1DDZ|B Chain B, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
Length = 496
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 23/142 (16%)
Query: 3 RNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASD 62
RNIAN D S ++YAV +LKV++I+V GH CGG K + G +
Sbjct: 96 RNIANQCIHSDISFLS----VLQYAVQYLKVKHILVCGHYGCGGAKAAL-----GDSRLG 146
Query: 63 FIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLL--TYPFVRESVVKNT 120
I+ W++ + K + ++CK+ ++E + N+L + S+V++
Sbjct: 147 LIDNWLRHIRDVRRMNAK------YLDKCKDGDEELNRLIELNVLEQVHNVCATSIVQDA 200
Query: 121 ------LALKGAHYDFVNGKFE 136
L ++G Y +GK
Sbjct: 201 WDAGQELTVQGVVYGVGDGKLR 222
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 3 RNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASD 62
RNIAN D S ++YAV +LKV+ +VV GH CGG + G +
Sbjct: 350 RNIANQCIHSDMSFLS----VLQYAVQYLKVKRVVVCGHYACGGCAAAL-----GDSRLG 400
Query: 63 FIEEWVKICSSAKSKVKKECNDLS 86
I+ W++ + + E + ++
Sbjct: 401 LIDNWLRHIRDVRRHNQAELSRIT 424
>pdb|1I6O|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
pdb|1I6O|B Chain B, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
Length = 220
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 3 RNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNG 57
RN+AN+V D S ++YAV L+VE+I++ GH CGG++ + P+ G
Sbjct: 64 RNVANLVIHTDLNCLS----VVQYAVDVLEVEHIIICGHYGCGGVQAAVENPELG 114
>pdb|1I6P|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
pdb|1T75|A Chain A, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|B Chain B, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|D Chain D, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|E Chain E, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|2ESF|A Chain A, Identification Of A Novel Non-catalytic Bicarbonate
Binding Site In Eubacterial Beta-carbonic Anhydrase
pdb|2ESF|B Chain B, Identification Of A Novel Non-catalytic Bicarbonate
Binding Site In Eubacterial Beta-carbonic Anhydrase
Length = 220
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 3 RNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNG 57
RN+AN+V D S ++YAV L+VE+I++ GH CGG++ + P+ G
Sbjct: 64 RNVANLVIHTDLNCLS----VVQYAVDVLEVEHIIICGHYGCGGVQAAVENPELG 114
>pdb|3UCJ|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Acetazolamide
pdb|3UCJ|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Acetazolamide
pdb|3UCK|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Phosphate
pdb|3UCK|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Phosphate
pdb|3UCM|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Thiocyanate
pdb|3UCM|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Thiocyanate
pdb|3UCN|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Azide
pdb|3UCN|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With Azide
pdb|3UCO|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Iodide
pdb|3UCO|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With Iodide
Length = 227
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 3 RNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIK-GLMSIPDNGTTAS 61
RN+ N+V D S +EY V HLK+++I+V GH CG K GL+ P +
Sbjct: 69 RNVGNLVSNKDLNCMS----CLEYTVDHLKIKHILVCGHYNCGACKAGLVWHPKTAGVTN 124
Query: 62 DFIEEWVKICSSAKSKVKKECNDLSFEEQCK-NCEKEAVNVSLGNLLTYPFVR 113
+I + ++ +K+ D ++++ + N E + NV ++ + R
Sbjct: 125 LWISDVREVRDKNAAKLHGLSADDAWDKMVELNVEAQVFNVCASPIVQAAWAR 177
>pdb|3EYX|A Chain A, Crystal Structure Of Carbonic Anhydrase Nce103 From
Saccharomyces Cerevisiae
pdb|3EYX|B Chain B, Crystal Structure Of Carbonic Anhydrase Nce103 From
Saccharomyces Cerevisiae
Length = 216
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 3 RNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMS 52
+N+AN+ D A +E+A++ LKV +++ GH+ CGGIK ++
Sbjct: 73 KNVANICHSEDLT----LKATLEFAIICLKVNKVIICGHTDCGGIKTCLT 118
>pdb|3QVM|A Chain A, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
pdb|3QVM|B Chain B, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
Length = 282
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 12 YDQKKYS---GAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWV 68
+ K+YS G +E ++ L + N+ +IGHS I G+ S T D I +
Sbjct: 73 FSTKRYSSLEGYAKDVEEILVALDLVNVSIIGHSVSSIIAGIAS-----THVGDRISDIT 127
Query: 69 KICSS 73
IC S
Sbjct: 128 XICPS 132
>pdb|2GDR|A Chain A, Crystal Structure Of A Bacterial Glutathione Transferase
pdb|2GDR|B Chain B, Crystal Structure Of A Bacterial Glutathione Transferase
pdb|2GDR|C Chain C, Crystal Structure Of A Bacterial Glutathione Transferase
pdb|2GDR|D Chain D, Crystal Structure Of A Bacterial Glutathione Transferase
pdb|2GDR|E Chain E, Crystal Structure Of A Bacterial Glutathione Transferase
pdb|2GDR|F Chain F, Crystal Structure Of A Bacterial Glutathione Transferase
Length = 202
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 28/60 (46%)
Query: 47 IKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNL 106
+ G P NG+ +++W+ SS K + + ++ KN ++++N LG +
Sbjct: 77 VPGKQLAPANGSFERYHLQQWLNFISSELHKSFSPLFNPASSDEWKNAVRQSLNTRLGQV 136
>pdb|2DSA|A Chain A, Ternary Complex Of Bphk, A Bacterial Gst
pdb|2DSA|B Chain B, Ternary Complex Of Bphk, A Bacterial Gst
pdb|2DSA|C Chain C, Ternary Complex Of Bphk, A Bacterial Gst
pdb|2DSA|D Chain D, Ternary Complex Of Bphk, A Bacterial Gst
Length = 203
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 28/60 (46%)
Query: 47 IKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNL 106
+ G P NG+ +++W+ SS K + + ++ KN ++++N LG +
Sbjct: 77 VPGKQLAPANGSFERYHLQQWLNFISSELHKSFSPLFNPASSDEWKNAVRQSLNTRLGQV 136
>pdb|1KJS|A Chain A, Nmr Solution Structure Of C5a At Ph 5.2, 303k, 20
Structures
Length = 74
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 76 SKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGK 134
S VKK C D + + CE+ A +SLG F VV + L +H D G+
Sbjct: 16 SVVKKCCYDGACVNNDETCEQRAARISLGPRCIKAFTECCVVASQLRANISHKDMQLGR 74
>pdb|3CU7|A Chain A, Human Complement Component 5
pdb|3CU7|B Chain B, Human Complement Component 5
pdb|3KLS|A Chain A, Structure Of Complement C5 In Complex With Ssl7
pdb|3KLS|B Chain B, Structure Of Complement C5 In Complex With Ssl7
pdb|3KM9|A Chain A, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|3KM9|B Chain B, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|4E0S|A Chain A, Crystal Structure Of C5b-6
Length = 1676
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%)
Query: 76 SKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKF 135
S VKK C D + + CE+ A +SLG F VV + L +H D G+
Sbjct: 693 SVVKKCCYDGACVNNDETCEQRAARISLGPRCIKAFTECCVVASQLRANISHKDMQLGRL 752
Query: 136 ELWDL 140
+ L
Sbjct: 753 HMKTL 757
>pdb|3PRX|A Chain A, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PRX|C Chain C, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PVM|A Chain A, Structure Of Complement C5 In Complex With Cvf
pdb|3PVM|C Chain C, Structure Of Complement C5 In Complex With Cvf
Length = 1676
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%)
Query: 76 SKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKF 135
S VKK C D + + CE+ A +SLG F VV + L +H D G+
Sbjct: 693 SVVKKCCYDGACVNNDETCEQRAARISLGPRCIKAFTECCVVASQLRANISHKDMQLGRL 752
Query: 136 ELWDL 140
+ L
Sbjct: 753 HMKTL 757
>pdb|1TMJ|A Chain A, Crystal Structure Of E.Coli Apo-Hppk(W89a) At 1.45
Angstrom Resolution
pdb|1TMM|A Chain A, Crystal Structure Of Ternary Complex Of E.Coli Hppk(W89a)
With Mgampcpp And 6-Hydroxymethylpterin
pdb|1TMM|B Chain B, Crystal Structure Of Ternary Complex Of E.Coli Hppk(W89a)
With Mgampcpp And 6-Hydroxymethylpterin
Length = 158
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 117 VKNTLALKGAHYDFVNGKFELWDLDFNILPSV 148
V NT L HYD N F LW L F I P +
Sbjct: 105 VINTERLTVPHYDMKNRGFMLWPL-FEIAPEL 135
>pdb|3HSJ|A Chain A, Crystal Structure Of E. Coli Hppk(N55a)
Length = 158
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 117 VKNTLALKGAHYDFVNGKFELWDLDFNILPSV 148
V NT L HYD N F LW L F I P +
Sbjct: 105 VINTERLTVPHYDMKNRGFMLWPL-FEIAPEL 135
>pdb|3HSD|A Chain A, Crystal Structure Of E. Coli Hppk(Y53a)
pdb|3HSD|B Chain B, Crystal Structure Of E. Coli Hppk(Y53a)
pdb|3HSG|A Chain A, Crystal Structure Of E. Coli Hppk(Y53a) In Complex With
Mgampcpp
Length = 158
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 117 VKNTLALKGAHYDFVNGKFELWDLDFNILPSV 148
V NT L HYD N F LW L F I P +
Sbjct: 105 VINTERLTVPHYDMKNRGFMLWPL-FEIAPEL 135
>pdb|3HCX|A Chain A, Crystal Structure Of E. Coli Hppk(N10a)
pdb|3HD1|A Chain A, Crystal Structure Of E. Coli Hppk(N10a) In Complex With
Mgam
Length = 158
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 117 VKNTLALKGAHYDFVNGKFELWDLDFNILPSV 148
V NT L HYD N F LW L F I P +
Sbjct: 105 VINTERLTVPHYDMKNRGFMLWPL-FEIAPEL 135
>pdb|3ILL|A Chain A, Crystal Structure Of E. Coli Hppk(D97a)
pdb|3ILO|A Chain A, Crystal Structure Of E. Coli Hppk(D97a) In Complex With
Mgampcpp And 6-Hydroxymethyl-7,8-Dihydropterin
Length = 158
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 117 VKNTLALKGAHYDFVNGKFELWDLDFNILPSV 148
V NT L HYD N F LW L F I P +
Sbjct: 105 VINTERLTVPHYDMKNRGFMLWPL-FEIAPEL 135
>pdb|3ILI|A Chain A, Crystal Structure Of E. Coli Hppk(D95a)
pdb|3ILJ|A Chain A, Crystal Structure Of E. Coli Hppk(D95a) In Complex With
Mgampcpp
Length = 158
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 117 VKNTLALKGAHYDFVNGKFELWDLDFNILPSV 148
V NT L HYD N F LW L F I P +
Sbjct: 105 VINTERLTVPHYDMKNRGFMLWPL-FEIAPEL 135
>pdb|3HD2|A Chain A, Crystal Structure Of E. Coli Hppk(Q50a) In Complex With
Mgam Pterin
Length = 158
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 117 VKNTLALKGAHYDFVNGKFELWDLDFNILPSV 148
V NT L HYD N F LW L F I P +
Sbjct: 105 VINTERLTVPHYDMKNRGFMLWPL-FEIAPEL 135
>pdb|1HQ2|A Chain A, Crystal Structure Of A Ternary Complex Of E.Coli
Hppk(R82a) With Mgampcpp And
6-Hydroxymethyl-7,8-Dihydropterin At 1.25 Angstrom
Resolution
pdb|1IM6|A Chain A, Crystal Structure Of Unligated Hppk(R82a) From E.Coli At
1.74 Angstrom Resolution
Length = 158
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 117 VKNTLALKGAHYDFVNGKFELWDLDFNILPSV 148
V NT L HYD N F LW L F I P +
Sbjct: 105 VINTERLTVPHYDMKNRGFMLWPL-FEIAPEL 135
>pdb|1F9H|A Chain A, Crystal Structure Of The Ternary Complex Of E. Coli
Hppk(R92a) With Mgampcpp And 6-Hydroxymethyl-7,8-
Dihydropterin At 1.50 Angstrom Resolution
pdb|1G4C|A Chain A, Crystal Structure Of A Complex Of Hppk(R92a) From E.Coli
With Mg2+ At 1.65 Angstrom Resolution
pdb|1G4C|B Chain B, Crystal Structure Of A Complex Of Hppk(R92a) From E.Coli
With Mg2+ At 1.65 Angstrom Resolution
pdb|1KBR|A Chain A, Crystal Structure Of Unligated Hppk(R92a) From E.Coli At
1.55 Angstrom Resolution
Length = 158
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 117 VKNTLALKGAHYDFVNGKFELWDLDFNILPSV 148
V NT L HYD N F LW L F I P +
Sbjct: 105 VINTERLTVPHYDMKNRGFMLWPL-FEIAPEL 135
>pdb|1DY3|A Chain A, Ternary Complex Of 7,8-Dihydro-6-
Hydroxymethylpterinpyrophosphokinase From Escherichia
Coli With Atp And A Substrate Analogue.
pdb|1EX8|A Chain A, Crystal Structure Of 6-Hydroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Complexed With Hp4a, The
Two-Substrate- Mimicking Inhibitor
pdb|1EQM|A Chain A, Crystal Structure Of Binary Complex Of
6-Hydroxymethyl-7,8- Dihydropterin Pyrophosphokinase
With Adenosine-5'- Diphosphate
pdb|1EQ0|A Chain A, Solution Structure Of 6-Hydroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Complexed With Mgamppcp
pdb|1Q0N|A Chain A, Crystal Structure Of A Ternary Complex Of
6-Hydroxymethyl-7, 8-Dihydropterin Pyrophosphokinase
From E. Coli With Mgampcpp And
6-Hydroxymethyl-7,8-Dihydropterin At 1.25 Angstrom
Resolution
pdb|1RAO|A Chain A, Crystal Structure Of A Ternary Complex Of E. Coli Hppk
With Amp And 6-Hydroxymethylpterin-Diphosphate At 1.56
Angstrom Resolution
pdb|1RB0|A Chain A, Crystal Structure Of A Binary Complex Of E. Coli Hppk With
6-Hydroxymethylpterin-Diphosphate At 1.35 Angstrom
Resolution
pdb|2F63|A Chain A, Solution Structure Of Hppk In Complex With Inhibitor
Analogs Ampcpp And Hp-1
pdb|2F65|A Chain A, Solution Structure Of Hppk In Complex With Inhibitor
Analog Ampcpp
pdb|1HKA|A Chain A, 6-Hydroxymethyl-7,8-Dihydropterin Pyrophosphokinase
pdb|3IP0|A Chain A, Crystal Structure Of E. Coli Hppk In Complx With Mgampcpp
And 6-Hydroxymethylpterin6-Carboxypterin
pdb|3UD5|A Chain A, Crystal Structure Of E. Coli Hppk In Complex With
Bisubstrate Analogue Inhibitor J1a
pdb|3UDE|A Chain A, Crystal Structure Of E. Coli Hppk In Complex With
Bisubstrate Analogue Inhibitor J1b
pdb|3UDV|A Chain A, Crystal Structure Of E. Coli Hppk In Complex With
Bisubstrate Analogue Inhibitor J1c
pdb|4F7V|A Chain A, Crystal Structure Of E. Coli Hppk In Complex With
Bisubstrate Analogue Inhibitor J1d (Hp26)
Length = 158
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 117 VKNTLALKGAHYDFVNGKFELWDLDFNILPSV 148
V NT L HYD N F LW L F I P +
Sbjct: 105 VINTERLTVPHYDMKNRGFMLWPL-FEIAPEL 135
>pdb|1TG8|A Chain A, The Structure Of Dengue Virus E Glycoprotein
pdb|1THD|A Chain A, Complex Organization Of Dengue Virus E Protein As Revealed
By 9.5 Angstrom Cryo-Em Reconstruction
pdb|1THD|B Chain B, Complex Organization Of Dengue Virus E Protein As Revealed
By 9.5 Angstrom Cryo-Em Reconstruction
pdb|1THD|C Chain C, Complex Organization Of Dengue Virus E Protein As Revealed
By 9.5 Angstrom Cryo-Em Reconstruction
Length = 395
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 99 VNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFEL 137
+ +S GNLL ++ + + L LKG Y GKF++
Sbjct: 270 IQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKV 308
>pdb|3KUE|A Chain A, Crystal Structure Of E. Coli Hppk(E77a)
Length = 158
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 117 VKNTLALKGAHYDFVNGKFELWDLDFNILPSV 148
V NT L HYD N F LW L F I P +
Sbjct: 105 VINTERLTVPHYDMKNRGFMLWPL-FEIAPEL 135
>pdb|1RTZ|A Chain A, Crystal Structure Of E.Coli Apo-Hppk(V83gDEL84-89) At 1.33
Angstrom Resolution
pdb|1RU1|A Chain A, Crystal Structure Of A Ternary Complex Of E. Coli
Hppk(V83gDEL84-89) With Mgampcpp And
6-Hydroxymethyl-7,8- Dihydropterin At 1.40 Angstrom
Resolution (Monoclinic Form)
pdb|1RU1|B Chain B, Crystal Structure Of A Ternary Complex Of E. Coli
Hppk(V83gDEL84-89) With Mgampcpp And
6-Hydroxymethyl-7,8- Dihydropterin At 1.40 Angstrom
Resolution (Monoclinic Form)
pdb|1RU2|A Chain A, Crystal Structure Of A Ternary Complex Of E.Coli
Hppk(V83gDEL84-89) With Mgampcpp And 6-
Hydroxymethylpterin At 1.48 Angstrom Resolution
(Orthorhombic Form)
Length = 152
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 117 VKNTLALKGAHYDFVNGKFELWDLDFNILPSV 148
V NT L HYD N F LW L F I P +
Sbjct: 99 VINTERLTVPHYDMKNRGFMLWPL-FEIAPEL 129
>pdb|1TGE|A Chain A, The Structure Of Immature Dengue Virus At 12.5 Angstrom
pdb|1TGE|B Chain B, The Structure Of Immature Dengue Virus At 12.5 Angstrom
pdb|1TGE|C Chain C, The Structure Of Immature Dengue Virus At 12.5 Angstrom
Length = 395
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 99 VNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFEL 137
+ +S GNLL ++ + + L LKG Y GKF++
Sbjct: 270 IQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKV 308
>pdb|1OAN|A Chain A, Crystal Structure Of The Dengue 2 Virus Envelope Protein
pdb|1OAN|B Chain B, Crystal Structure Of The Dengue 2 Virus Envelope Protein
pdb|1OKE|A Chain A, Crystal Structure Of The Dengue 2 Virus Envelope Protein
In Complex With N-Octyl-Beta-D-Glucoside
pdb|1OKE|B Chain B, Crystal Structure Of The Dengue 2 Virus Envelope Protein
In Complex With N-Octyl-Beta-D-Glucoside
pdb|1OK8|A Chain A, Crystal Structure Of The Dengue 2 Virus Envelope
Glycoprotein In The Postfusion Conformation
pdb|2B6B|A Chain A, Cryo Em Structure Of Dengue Complexed With Crd Of Dc-Sign
pdb|2B6B|B Chain B, Cryo Em Structure Of Dengue Complexed With Crd Of Dc-Sign
pdb|2B6B|C Chain C, Cryo Em Structure Of Dengue Complexed With Crd Of Dc-Sign
Length = 394
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 99 VNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFEL 137
+ +S GNLL ++ + + L LKG Y GKF++
Sbjct: 270 IQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKV 308
>pdb|3C6D|A Chain A, The Pseudo-Atomic Structure Of Dengue Immature Virus
pdb|3C6D|B Chain B, The Pseudo-Atomic Structure Of Dengue Immature Virus
pdb|3C6D|C Chain C, The Pseudo-Atomic Structure Of Dengue Immature Virus
pdb|3C6R|A Chain A, Low Ph Immature Dengue Virus
pdb|3C6R|B Chain B, Low Ph Immature Dengue Virus
pdb|3C6R|C Chain C, Low Ph Immature Dengue Virus
pdb|3IXY|A Chain A, The Pseudo-Atomic Structure Of Dengue Immature Virus In
Complex With Fab Fragments Of The Anti-Fusion Loop
Antibody E53
pdb|3IXY|B Chain B, The Pseudo-Atomic Structure Of Dengue Immature Virus In
Complex With Fab Fragments Of The Anti-Fusion Loop
Antibody E53
pdb|3IXY|C Chain C, The Pseudo-Atomic Structure Of Dengue Immature Virus In
Complex With Fab Fragments Of The Anti-Fusion Loop
Antibody E53
pdb|3IYA|A Chain A, Association Of The Pr Peptides With Dengue Virus Blocks
Memb Fusion At Acidic Ph
pdb|3IYA|B Chain B, Association Of The Pr Peptides With Dengue Virus Blocks
Memb Fusion At Acidic Ph
pdb|3IYA|C Chain C, Association Of The Pr Peptides With Dengue Virus Blocks
Memb Fusion At Acidic Ph
Length = 395
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 99 VNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFEL 137
+ +S GNLL ++ + + L LKG Y GKF++
Sbjct: 270 IQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKV 308
>pdb|2R6P|A Chain A, Fit Of E Protein And Fab 1a1d-2 Into 24 Angstrom
Resolution Cryoem Map Of Fab Complexed With Dengue 2
Virus.
pdb|2R6P|B Chain B, Fit Of E Protein And Fab 1a1d-2 Into 24 Angstrom
Resolution Cryoem Map Of Fab Complexed With Dengue 2
Virus.
pdb|2R6P|C Chain C, Fit Of E Protein And Fab 1a1d-2 Into 24 Angstrom
Resolution Cryoem Map Of Fab Complexed With Dengue 2
Virus
Length = 390
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 99 VNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFEL 137
+ +S GNLL ++ + + L LKG Y GKF++
Sbjct: 265 IQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKV 303
>pdb|3C5X|A Chain A, Crystal Structure Of The Precursor Membrane Protein-
Envelope Protein Heterodimer From The Dengue 2 Virus At
Low Ph
pdb|3C6E|A Chain A, Crystal Structure Of The Precursor Membrane Protein-
Envelope Protein Heterodimer From The Dengue 2 Virus At
Neutral Ph
Length = 402
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 99 VNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFEL 137
+ +S GNLL ++ + + L LKG Y GKF++
Sbjct: 278 IQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKV 316
>pdb|3HQA|A Chain A, Crystal Structure Of Human Desarg-C5a
pdb|3HQA|B Chain B, Crystal Structure Of Human Desarg-C5a
pdb|3HQB|A Chain A, Crystal Structure Of Human Desarg-C5a
pdb|3HQB|B Chain B, Crystal Structure Of Human Desarg-C5a
Length = 73
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%)
Query: 76 SKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNG 133
S VKK C D + + CE+ A +SLG F VV + L +H D G
Sbjct: 16 SVVKKCCYDGACVNNDETCEQRAARISLGPRCIKAFTECCVVASQLRANISHKDMQLG 73
>pdb|2ICS|A Chain A, Crystal Structure Of An Adenine Deaminase
Length = 379
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 48 KGLMSIPDNGTTASDFIEEWVKICSSAKSKV 78
KG+ ++ D GTT ++ I E+ + AK+ V
Sbjct: 81 KGVTTVIDAGTTGAENIHEFYDLAQQAKTNV 111
>pdb|4B56|A Chain A, Structure Of Ectonucleotide
Pyrophosphatase-Phosphodiesterase-1 (Npp1)
pdb|4B56|B Chain B, Structure Of Ectonucleotide
Pyrophosphatase-Phosphodiesterase-1 (Npp1)
Length = 820
Score = 26.6 bits (57), Expect = 6.4, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 80 KECNDLSFEEQCKNCEKEAVNVSLGN 105
K C FE NC +A VSLGN
Sbjct: 2 KSCKGRCFERTFSNCRCDAACVSLGN 27
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 41 HSCCGGIKGLMSIPD-NGTTASDFIEEWVKICSSAKSKVKK 80
+ I+ L++ P+ N A+D E+W+K AK+K ++
Sbjct: 102 RTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKARE 142
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 41 HSCCGGIKGLMSIPD-NGTTASDFIEEWVKICSSAKSKVKK 80
+ I+ L++ P+ N A+D E+W+K AK+K ++
Sbjct: 102 RTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKARE 142
>pdb|1P58|A Chain A, Complex Organization Of Dengue Virus Membrane Proteins As
Revealed By 9.5 Angstrom Cryo-Em Reconstruction
pdb|1P58|B Chain B, Complex Organization Of Dengue Virus Membrane Proteins As
Revealed By 9.5 Angstrom Cryo-Em Reconstruction
pdb|1P58|C Chain C, Complex Organization Of Dengue Virus Membrane Proteins As
Revealed By 9.5 Angstrom Cryo-Em Reconstruction
Length = 495
Score = 25.8 bits (55), Expect = 8.9, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 99 VNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFEL 137
+ +S GNLL ++ + + L LKG Y GKF++
Sbjct: 270 IQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKV 308
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 46 GIKGLMSIPD-NGTTASDFIEEWVKICSSAKSKVKK 80
I+ L++ P+ N A+D E+W+K AK+K ++
Sbjct: 107 SIQALLASPNPNDPLANDVAEDWIKNEQGAKAKARE 142
>pdb|3J27|A Chain A, Cryoem Structure Of Dengue Virus
pdb|3J27|C Chain C, Cryoem Structure Of Dengue Virus
pdb|3J27|E Chain E, Cryoem Structure Of Dengue Virus
pdb|3J2P|A Chain A, Cryoem Structure Of Dengue Virus Capsid Protein
Heterotetramer
pdb|3J2P|C Chain C, Cryoem Structure Of Dengue Virus Capsid Protein
Heterotetramer
Length = 495
Score = 25.8 bits (55), Expect = 9.2, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 99 VNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFEL 137
+ +S GNLL ++ + + L LKG Y GKF++
Sbjct: 270 IQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKV 308
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 46 GIKGLMSIPD-NGTTASDFIEEWVKICSSAKSKVKK 80
I+ L++ P+ N A+D E+W+K AK+K ++
Sbjct: 109 SIQALLASPNPNDPLANDVAEDWIKNEQGAKAKARE 144
>pdb|1CFA|A Chain A, Solution Structure Of A Semi-Synthetic C5a Receptor
Antagonist At Ph 5.2, 303k, Nmr, 20 Structures
Length = 71
Score = 25.8 bits (55), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 76 SKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDF 130
S VKK C D + + CE+ A +SLG F VV + L +H D
Sbjct: 16 SVVKKCCYDGASVNNDETCEQRAARISLGPRCIKAFTECCVVASQLRANISHKDM 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,571,296
Number of Sequences: 62578
Number of extensions: 167053
Number of successful extensions: 399
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 359
Number of HSP's gapped (non-prelim): 59
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)