Query 031959
Match_columns 150
No_of_seqs 129 out of 1036
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 07:43:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031959.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031959hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03014 carbonic anhydrase 100.0 7.5E-41 1.6E-45 268.7 16.8 150 1-150 187-336 (347)
2 PLN03019 carbonic anhydrase 100.0 1.4E-40 3.1E-45 265.9 16.5 149 1-150 182-330 (330)
3 PLN00416 carbonate dehydratase 100.0 6.6E-40 1.4E-44 257.0 16.9 147 1-147 107-254 (258)
4 cd00884 beta_CA_cladeB Carboni 100.0 2E-39 4.3E-44 244.9 15.8 137 1-138 53-190 (190)
5 PRK10437 carbonic anhydrase; P 100.0 9.4E-39 2E-43 245.4 16.1 136 1-145 62-198 (220)
6 PLN03006 carbonate dehydratase 100.0 1.2E-38 2.5E-43 253.0 16.5 144 1-146 140-283 (301)
7 cd00883 beta_CA_cladeA Carboni 100.0 1.6E-38 3.4E-43 238.9 15.1 129 1-138 52-182 (182)
8 PLN02154 carbonic anhydrase 100.0 1.6E-36 3.4E-41 239.5 17.1 146 1-147 134-279 (290)
9 COG0288 CynT Carbonic anhydras 100.0 3.9E-37 8.4E-42 235.0 13.1 141 1-148 63-205 (207)
10 PRK15219 carbonic anhydrase; P 100.0 4E-36 8.7E-41 234.2 14.9 126 1-138 117-244 (245)
11 PF00484 Pro_CA: Carbonic anhy 100.0 2.7E-36 5.8E-41 220.4 12.5 127 1-135 26-153 (153)
12 cd00382 beta_CA Carbonic anhyd 100.0 7.3E-32 1.6E-36 190.1 10.7 90 1-138 30-119 (119)
13 cd03378 beta_CA_cladeC Carboni 100.0 2.2E-31 4.7E-36 194.8 9.8 88 1-138 66-154 (154)
14 cd03379 beta_CA_cladeD Carboni 100.0 1.5E-29 3.2E-34 183.3 7.0 113 1-138 30-142 (142)
15 KOG1578 Predicted carbonic anh 99.9 2.2E-25 4.7E-30 173.4 11.1 140 1-141 121-260 (276)
16 KOG1578 Predicted carbonic anh 92.4 0.08 1.7E-06 42.1 1.8 70 1-70 71-150 (276)
17 COG1254 AcyP Acylphosphatases 76.5 2.4 5.1E-05 28.4 2.2 21 120-140 29-49 (92)
18 PF00355 Rieske: Rieske [2Fe-2 67.3 2.1 4.5E-05 28.0 0.3 17 122-138 65-81 (97)
19 PF08184 Cuticle_2: Cuticle pr 63.9 3.6 7.7E-05 24.2 0.8 13 124-136 7-19 (59)
20 PF05952 ComX: Bacillus compet 61.3 15 0.00032 22.5 3.2 26 101-126 4-29 (57)
21 cd03528 Rieske_RO_ferredoxin R 59.6 3.5 7.7E-05 27.0 0.3 16 121-136 60-75 (98)
22 PF01707 Peptidase_C9: Peptida 58.8 3 6.4E-05 31.7 -0.2 40 101-146 135-175 (202)
23 cd03478 Rieske_AIFL_N AIFL (ap 57.9 3.3 7.2E-05 27.1 -0.0 16 121-136 59-74 (95)
24 cd03548 Rieske_RO_Alpha_OMO_CA 56.6 5.8 0.00013 28.0 1.0 18 121-138 76-93 (136)
25 cd04321 ScAspRS_mt_like_N ScAs 55.2 19 0.00041 23.2 3.3 26 120-145 1-28 (86)
26 TIGR02377 MocE_fam_FeS Rieske 54.8 5.1 0.00011 26.7 0.5 16 121-136 62-77 (101)
27 PF00009 GTP_EFTU: Elongation 53.6 8.4 0.00018 28.2 1.6 13 33-45 3-15 (188)
28 cd03529 Rieske_NirD Assimilato 52.8 4.9 0.00011 26.8 0.1 16 121-136 66-81 (103)
29 PF10500 SR-25: Nuclear RNA-sp 52.3 7.8 0.00017 30.1 1.2 44 102-146 150-194 (225)
30 TIGR02378 nirD_assim_sml nitri 52.2 5.5 0.00012 26.6 0.3 16 121-136 67-82 (105)
31 cd03473 Rieske_CMP_Neu5Ac_hydr 52.0 5.2 0.00011 27.6 0.2 18 120-137 69-86 (107)
32 PRK14432 acylphosphatase; Prov 51.3 22 0.00048 23.6 3.2 21 120-140 27-47 (93)
33 PRK09511 nirD nitrite reductas 50.4 5.7 0.00012 27.1 0.2 16 121-136 70-85 (108)
34 COG1116 TauB ABC-type nitrate/ 49.9 9.1 0.0002 30.3 1.2 13 34-46 30-42 (248)
35 cd01891 TypA_BipA TypA (tyrosi 49.8 11 0.00024 27.6 1.7 13 33-45 2-14 (194)
36 COG2146 {NirD} Ferredoxin subu 49.6 6.7 0.00014 26.7 0.4 16 121-136 66-81 (106)
37 PRK09965 3-phenylpropionate di 49.2 6.4 0.00014 26.4 0.3 16 121-136 62-77 (106)
38 cd03530 Rieske_NirD_small_Baci 48.5 5.4 0.00012 26.2 -0.2 15 121-135 61-75 (98)
39 cd03474 Rieske_T4moC Toluene-4 48.3 7.3 0.00016 26.1 0.5 15 121-135 61-75 (108)
40 PRK14430 acylphosphatase; Prov 47.2 16 0.00034 24.3 1.9 21 120-140 29-49 (92)
41 PRK14445 acylphosphatase; Prov 47.1 36 0.00077 22.4 3.7 20 120-139 29-48 (91)
42 PRK14440 acylphosphatase; Prov 44.5 19 0.00041 23.8 2.0 21 120-140 28-48 (90)
43 PRK14423 acylphosphatase; Prov 44.1 23 0.0005 23.4 2.4 21 120-140 30-50 (92)
44 PRK14429 acylphosphatase; Prov 43.4 40 0.00087 22.1 3.5 20 120-139 27-46 (90)
45 TIGR03736 PRTRC_ThiF PRTRC sys 43.3 51 0.0011 25.9 4.5 31 109-139 212-242 (244)
46 PRK14434 acylphosphatase; Prov 43.0 44 0.00095 22.1 3.6 22 120-141 27-49 (92)
47 cd03467 Rieske Rieske domain; 42.4 8.8 0.00019 25.1 0.1 16 121-136 61-76 (98)
48 cd01887 IF2_eIF5B IF2/eIF5B (i 42.4 16 0.00035 25.5 1.5 12 34-45 1-12 (168)
49 KOG4387 Ornithine decarboxylas 41.6 26 0.00057 26.4 2.5 25 18-42 119-143 (191)
50 cd01878 HflX HflX subfamily. 40.9 18 0.0004 26.6 1.7 15 31-45 39-53 (204)
51 cd03535 Rieske_RO_Alpha_NDO Ri 40.0 16 0.00034 25.3 1.1 21 121-142 65-85 (123)
52 PRK14449 acylphosphatase; Prov 39.8 51 0.0011 21.6 3.5 21 120-140 28-48 (90)
53 PF02100 ODC_AZ: Ornithine dec 39.8 21 0.00046 24.5 1.7 33 17-49 40-72 (108)
54 TIGR01250 pro_imino_pep_2 prol 39.8 33 0.00073 25.4 3.0 31 21-51 83-113 (288)
55 PF07859 Abhydrolase_3: alpha/ 39.7 22 0.00048 26.0 1.9 32 20-51 52-88 (211)
56 PRK14436 acylphosphatase; Prov 39.6 50 0.0011 21.7 3.5 21 120-140 29-49 (91)
57 cd01890 LepA LepA subfamily. 39.5 17 0.00038 25.8 1.3 12 34-45 1-12 (179)
58 COG4707 Uncharacterized protei 39.5 31 0.00067 23.4 2.4 27 100-131 48-76 (107)
59 PF11302 DUF3104: Protein of u 39.2 23 0.0005 22.8 1.7 16 127-142 51-66 (75)
60 PRK14451 acylphosphatase; Prov 38.9 25 0.00055 23.1 1.9 21 120-140 28-48 (89)
61 cd03531 Rieske_RO_Alpha_KSH Th 38.9 17 0.00036 24.9 1.1 18 121-139 62-79 (115)
62 PRK14448 acylphosphatase; Prov 38.7 25 0.00054 23.2 1.9 21 120-140 27-47 (90)
63 cd04160 Arfrp1 Arfrp1 subfamil 38.7 18 0.00039 25.3 1.3 10 36-45 2-11 (167)
64 PF00708 Acylphosphatase: Acyl 38.7 50 0.0011 21.4 3.4 21 120-140 29-49 (91)
65 PF02983 Pro_Al_protease: Alph 38.3 72 0.0016 19.4 3.8 24 119-142 21-44 (62)
66 PRK14441 acylphosphatase; Prov 38.2 37 0.0008 22.5 2.7 21 120-140 30-50 (93)
67 PRK14422 acylphosphatase; Prov 37.5 51 0.0011 21.8 3.2 21 120-140 31-51 (93)
68 PF07453 NUMOD1: NUMOD1 domain 37.3 41 0.00088 17.9 2.3 14 126-139 4-17 (37)
69 PF01011 PQQ: PQQ enzyme repea 37.2 30 0.00064 18.6 1.8 17 126-142 13-29 (38)
70 PRK03592 haloalkane dehalogena 37.0 35 0.00077 26.4 2.8 32 21-52 80-111 (295)
71 PRK14426 acylphosphatase; Prov 36.6 31 0.00067 22.8 2.1 20 120-139 29-48 (92)
72 PRK14420 acylphosphatase; Prov 36.3 32 0.0007 22.5 2.1 21 120-140 27-47 (91)
73 cd04167 Snu114p Snu114p subfam 36.2 21 0.00045 26.7 1.3 13 34-46 1-13 (213)
74 PF12697 Abhydrolase_6: Alpha/ 35.0 40 0.00086 23.8 2.6 31 20-50 52-82 (228)
75 PRK14425 acylphosphatase; Prov 35.0 36 0.00077 22.6 2.2 21 120-140 31-51 (94)
76 cd04169 RF3 RF3 subfamily. Pe 34.7 25 0.00055 27.7 1.7 14 33-46 2-15 (267)
77 PRK14444 acylphosphatase; Prov 34.3 35 0.00076 22.5 2.0 21 120-140 29-49 (92)
78 PRK14438 acylphosphatase; Prov 34.2 71 0.0015 21.0 3.5 21 120-140 28-48 (91)
79 PRK14427 acylphosphatase; Prov 34.2 73 0.0016 21.1 3.6 21 120-140 31-51 (94)
80 PF09905 DUF2132: Uncharacteri 34.1 47 0.001 20.7 2.4 21 97-117 40-60 (64)
81 PRK14437 acylphosphatase; Prov 33.9 57 0.0012 22.4 3.1 21 120-140 48-68 (109)
82 PF13806 Rieske_2: Rieske-like 33.8 16 0.00034 24.7 0.3 13 123-135 69-81 (104)
83 cd01897 NOG NOG1 is a nucleola 33.6 26 0.00057 24.4 1.5 12 34-45 1-12 (168)
84 smart00564 PQQ beta-propeller 33.6 39 0.00085 16.9 1.8 12 127-138 20-31 (33)
85 PRK14446 acylphosphatase; Prov 33.5 48 0.001 21.8 2.6 21 120-140 27-47 (88)
86 PRK14421 acylphosphatase; Prov 32.8 72 0.0016 21.5 3.4 21 120-140 29-49 (99)
87 PF15232 DUF4585: Domain of un 32.0 52 0.0011 21.2 2.4 13 126-138 32-44 (75)
88 PRK14428 acylphosphatase; Prov 31.9 81 0.0018 21.1 3.5 21 120-140 33-53 (97)
89 PRK14443 acylphosphatase; Prov 31.7 46 0.001 22.1 2.3 21 120-140 29-49 (93)
90 PLN02824 hydrolase, alpha/beta 31.5 48 0.001 25.6 2.8 30 21-50 89-118 (294)
91 PRK14435 acylphosphatase; Prov 31.5 40 0.00088 22.1 2.0 21 120-140 27-47 (90)
92 cd03472 Rieske_RO_Alpha_BPDO_l 31.2 31 0.00066 24.1 1.4 24 121-145 71-94 (128)
93 PRK14452 acylphosphatase; Prov 30.8 71 0.0015 21.8 3.2 21 120-140 45-65 (107)
94 PRK14433 acylphosphatase; Prov 30.7 43 0.00092 21.9 2.0 21 120-140 26-46 (87)
95 PRK14424 acylphosphatase; Prov 30.5 42 0.00092 22.3 2.0 21 120-140 32-52 (94)
96 COG2885 OmpA Outer membrane pr 30.0 66 0.0014 23.7 3.2 27 21-47 102-128 (190)
97 PF01368 DHH: DHH family; Int 29.9 41 0.0009 23.1 2.0 20 32-51 4-25 (145)
98 PF08477 Miro: Miro-like prote 29.6 35 0.00076 22.4 1.5 11 35-45 1-11 (119)
99 PRK14447 acylphosphatase; Prov 29.4 69 0.0015 21.2 2.9 20 120-139 29-49 (95)
100 PF11815 DUF3336: Domain of un 29.2 13 0.00029 26.7 -0.7 10 2-11 87-96 (145)
101 PF01764 Lipase_3: Lipase (cla 28.4 56 0.0012 22.2 2.4 32 20-51 50-81 (140)
102 COG3002 Uncharacterized protei 27.8 32 0.0007 31.1 1.3 19 34-52 563-593 (880)
103 KOG1420 Ca2+-activated K+ chan 27.8 32 0.0007 30.9 1.2 22 31-52 355-376 (1103)
104 cd00109 KU BPTI/Kunitz family 27.7 59 0.0013 18.7 2.1 20 122-141 15-34 (54)
105 cd03538 Rieske_RO_Alpha_AntDO 27.6 27 0.00059 25.0 0.7 22 120-142 85-106 (146)
106 cd04337 Rieske_RO_Alpha_Cao Ca 27.6 23 0.00049 24.8 0.3 17 121-138 78-94 (129)
107 cd04155 Arl3 Arl3 subfamily. 27.5 61 0.0013 22.7 2.5 17 30-46 11-27 (173)
108 PF08538 DUF1749: Protein of u 27.3 60 0.0013 26.5 2.7 26 20-45 90-120 (303)
109 cd04159 Arl10_like Arl10-like 27.1 36 0.00078 23.0 1.2 11 35-45 1-11 (159)
110 PF00561 Abhydrolase_1: alpha/ 27.1 58 0.0012 23.4 2.4 29 20-48 30-58 (230)
111 TIGR03100 hydr1_PEP hydrolase, 27.0 70 0.0015 24.9 3.0 28 21-49 86-114 (274)
112 cd04114 Rab30 Rab30 subfamily. 26.9 37 0.0008 23.7 1.3 13 34-46 8-20 (169)
113 cd01889 SelB_euk SelB subfamil 26.8 40 0.00086 24.6 1.5 11 35-45 2-12 (192)
114 cd04318 EcAsnRS_like_N EcAsnRS 26.7 1.1E+02 0.0024 19.1 3.4 22 121-142 2-24 (82)
115 KOG3360 Acylphosphatase [Energ 26.7 57 0.0012 22.1 2.0 18 120-137 33-50 (98)
116 cd01862 Rab7 Rab7 subfamily. 26.6 40 0.00087 23.5 1.4 11 35-45 2-12 (172)
117 PF00622 SPRY: SPRY domain; I 26.3 99 0.0022 20.3 3.3 20 121-140 67-86 (124)
118 smart00449 SPRY Domain in SPla 26.1 96 0.0021 20.5 3.2 22 121-142 66-87 (122)
119 cd01883 EF1_alpha Eukaryotic e 25.4 39 0.00085 25.5 1.2 11 35-45 1-11 (219)
120 cd04151 Arl1 Arl1 subfamily. 25.4 41 0.00088 23.4 1.3 11 36-46 2-12 (158)
121 PRK08099 bifunctional DNA-bind 25.2 51 0.0011 27.8 2.0 22 27-48 213-234 (399)
122 cd04166 CysN_ATPS CysN_ATPS su 24.8 43 0.00094 25.0 1.4 11 35-45 1-11 (208)
123 cd03539 Rieske_RO_Alpha_S5H Th 24.7 37 0.00081 23.7 0.9 22 120-142 62-83 (129)
124 PF12904 Collagen_bind_2: Puta 24.4 1.2E+02 0.0025 20.3 3.2 19 122-140 48-66 (93)
125 cd04170 EF-G_bact Elongation f 24.3 42 0.00091 26.1 1.2 11 35-45 1-11 (268)
126 PF07250 Glyoxal_oxid_N: Glyox 24.2 79 0.0017 24.9 2.8 28 120-147 43-70 (243)
127 PRK13946 shikimate kinase; Pro 24.2 48 0.001 24.2 1.5 23 27-49 4-26 (184)
128 PLN02965 Probable pheophorbida 24.1 87 0.0019 23.7 3.0 29 22-50 59-88 (255)
129 TIGR02427 protocat_pcaD 3-oxoa 24.0 1E+02 0.0022 22.1 3.2 30 20-49 65-94 (251)
130 cd04115 Rab33B_Rab33A Rab33B/R 23.8 45 0.00098 23.6 1.3 12 34-45 3-14 (170)
131 COG0113 HemB Delta-aminolevuli 23.7 74 0.0016 26.2 2.5 29 102-130 9-37 (330)
132 smart00131 KU BPTI/Kunitz fami 23.4 97 0.0021 17.7 2.5 21 122-142 15-35 (53)
133 cd04323 AsnRS_cyto_like_N AsnR 23.1 1.1E+02 0.0025 19.2 3.0 22 121-142 2-24 (84)
134 PF14253 AbiH: Bacteriophage a 22.4 55 0.0012 25.2 1.6 13 31-43 232-244 (270)
135 cd04316 ND_PkAspRS_like_N ND_P 22.4 1.3E+02 0.0028 20.0 3.3 25 118-142 12-37 (108)
136 TIGR02528 EutP ethanolamine ut 22.4 56 0.0012 22.1 1.5 11 35-45 2-12 (142)
137 KOG0922 DEAH-box RNA helicase 22.3 51 0.0011 29.8 1.5 12 34-45 67-78 (674)
138 cd03477 Rieske_YhfW_C YhfW fam 22.3 31 0.00068 22.6 0.2 17 120-137 57-73 (91)
139 cd01884 EF_Tu EF-Tu subfamily. 22.3 53 0.0012 24.5 1.4 12 35-46 4-15 (195)
140 COG4525 TauB ABC-type taurine 22.2 55 0.0012 25.6 1.5 16 32-47 30-45 (259)
141 cd03532 Rieske_RO_Alpha_VanA_D 22.1 36 0.00077 23.1 0.4 17 121-138 65-81 (116)
142 PF07166 DUF1398: Protein of u 22.1 1.8E+02 0.0039 20.5 4.0 32 109-142 18-49 (125)
143 TIGR03598 GTPase_YsxC ribosome 22.0 62 0.0013 23.2 1.7 15 31-45 16-30 (179)
144 PRK07581 hypothetical protein; 21.9 75 0.0016 25.3 2.3 23 29-51 118-141 (339)
145 cd04124 RabL2 RabL2 subfamily. 21.9 56 0.0012 22.9 1.4 12 35-46 2-13 (161)
146 PRK14442 acylphosphatase; Prov 21.7 80 0.0017 20.7 2.0 21 120-140 29-49 (91)
147 cd01876 YihA_EngB The YihA (En 21.6 52 0.0011 22.4 1.2 11 35-45 1-11 (170)
148 PF03205 MobB: Molybdopterin g 21.4 63 0.0014 22.8 1.6 12 34-45 1-12 (140)
149 COG1903 CbiD Cobalamin biosynt 21.3 91 0.002 26.2 2.7 23 20-43 236-258 (367)
150 PRK11070 ssDNA exonuclease Rec 21.1 64 0.0014 28.7 1.8 29 22-50 53-86 (575)
151 PF03088 Str_synth: Strictosid 21.0 1E+02 0.0022 20.3 2.4 14 126-139 40-53 (89)
152 PF13671 AAA_33: AAA domain; P 21.0 65 0.0014 21.9 1.6 11 35-45 1-11 (143)
153 cd04137 RheB Rheb (Ras Homolog 21.0 59 0.0013 23.0 1.4 13 34-46 2-14 (180)
154 cd03542 Rieske_RO_Alpha_HBDO R 20.8 37 0.00081 23.5 0.3 18 121-139 63-80 (123)
155 cd01893 Miro1 Miro1 subfamily. 20.4 59 0.0013 22.9 1.3 12 35-46 2-13 (166)
No 1
>PLN03014 carbonic anhydrase
Probab=100.00 E-value=7.5e-41 Score=268.74 Aligned_cols=150 Identities=71% Similarity=1.180 Sum_probs=130.4
Q ss_pred CccccccccCCCCCCcccchHHHHHHHHhhcCcceEEEeecCCchhhhhhhcCCCCCCCCchhHHHHHHhhHHHHHHHHH
Q 031959 1 MVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKK 80 (150)
Q Consensus 1 ViRNaGN~v~~~~~~~~~~~~asleyav~~L~v~~IvV~GHt~CGav~aa~~~~~~~~~~~~~i~~~l~~~~~a~~~~~~ 80 (150)
|+||+||+|+++|...+++++++||||+.+|||++|||||||+||||+|+++....+....+++++|++.++|++.....
T Consensus 187 VvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~~~~~g~~~~~~I~~wl~~i~pA~~~v~~ 266 (347)
T PLN03014 187 VVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSFPLDGNNSTDFIEDWVKICLPAKSKVIS 266 (347)
T ss_pred EEeccccccCcccccccccchhHHHHHHHHhCCCEEEEeCCCCchHHHHHHhccccccccchhHHHHHHHHHHHHHHHHh
Confidence 68999999999875445568899999999999999999999999999999875443333467999999999999987665
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHcCceEEEEEEEEcccCEEEEeeccCCCCCCCCC
Q 031959 81 ECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNILPSVSV 150 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~v~~g~l~V~G~~Ydi~tG~v~~~~~~~~~~~~~~~ 150 (150)
.....+..+.++.++++||++|+++|+++|+|++++++|+|.||||+||++||+|++++.+..+-|+.++
T Consensus 267 ~~~~~~~~d~~~~~ekeNV~~qV~nL~t~P~V~eav~~G~L~I~G~~YDi~TG~V~~l~~~~~~~~~~~~ 336 (347)
T PLN03014 267 ELGDSAFEDQCGRCEREAVNVSLANLLTYPFVREGLVKGTLALKGGYYDFVKGAFELWGLEFGLSETSSV 336 (347)
T ss_pred hhccccHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCcEEEEEEEECCCceEEEeccccccCCcccc
Confidence 5555556666667788999999999999999999999999999999999999999999999999888764
No 2
>PLN03019 carbonic anhydrase
Probab=100.00 E-value=1.4e-40 Score=265.94 Aligned_cols=149 Identities=72% Similarity=1.196 Sum_probs=126.4
Q ss_pred CccccccccCCCCCCcccchHHHHHHHHhhcCcceEEEeecCCchhhhhhhcCCCCCCCCchhHHHHHHhhHHHHHHHHH
Q 031959 1 MVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKK 80 (150)
Q Consensus 1 ViRNaGN~v~~~~~~~~~~~~asleyav~~L~v~~IvV~GHt~CGav~aa~~~~~~~~~~~~~i~~~l~~~~~a~~~~~~ 80 (150)
|+|||||+|+++|...++++++|||||+.+|||++|||||||+||||+|+++....+...++++++|++.+.|++.....
T Consensus 182 VvRNaGNiV~p~d~~~~~~v~aSIEYAV~~L~V~~IVV~GHs~CGaVkAal~~~~~g~~~~~~I~~wL~~i~pA~~~v~~ 261 (330)
T PLN03019 182 VVRNIANMVPPFDKVKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSFPLDGNNSTDFIEDWVKICLPAKSKVLA 261 (330)
T ss_pred EEeccccccCCcccccccccchhHHHHHHHhCCCEEEEecCCCchHHHHHHhccccCCccchHHHHHHHHHHHHHHHHhc
Confidence 68999999999876545678899999999999999999999999999999875444434467999999999999876554
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHcCceEEEEEEEEcccCEEEEeeccCCCCCCCCC
Q 031959 81 ECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNILPSVSV 150 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~v~~g~l~V~G~~Ydi~tG~v~~~~~~~~~~~~~~~ 150 (150)
..+..+..+....++ .||++|+++|+++|+|+++|++|+|.||||+||++||+|++++.+..+-||.|+
T Consensus 262 ~~~~~~~~d~~~~~E-~NV~~qv~nL~t~P~V~e~v~~G~L~I~G~~YDl~TG~V~~~~~~~~~~~~~~~ 330 (330)
T PLN03019 262 ESESSAFEDQCGRCE-RAVNVSLANLLTYPFVREGVVKGTLALKGGYYDFVNGSFELWELQFGISPVHSI 330 (330)
T ss_pred ccccccHHHHHHHHH-HHHHHHHHHHHhCHHHHHHHHcCCcEEEEEEEECCCceEEEEccccCcCCCCcC
Confidence 333334444444444 599999999999999999999999999999999999999999999999999874
No 3
>PLN00416 carbonate dehydratase
Probab=100.00 E-value=6.6e-40 Score=257.00 Aligned_cols=147 Identities=71% Similarity=1.248 Sum_probs=122.6
Q ss_pred CccccccccCCCCCCcccchHHHHHHHHhhcCcceEEEeecCCchhhhhhhcCCCCC-CCCchhHHHHHHhhHHHHHHHH
Q 031959 1 MVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNG-TTASDFIEEWVKICSSAKSKVK 79 (150)
Q Consensus 1 ViRNaGN~v~~~~~~~~~~~~asleyav~~L~v~~IvV~GHt~CGav~aa~~~~~~~-~~~~~~i~~~l~~~~~a~~~~~ 79 (150)
|+||+||+|+++|.+..+++++|||||+.+|||++|||||||+||||+|+++..... ....+++..|++.++|+++...
T Consensus 107 VvRNaGNiV~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGaV~Aa~~~~~~~~~~~~~~l~~wl~~i~pa~~~~~ 186 (258)
T PLN00416 107 VVRNIANMVPPFDQKRHSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLMSIEDDAAPTQSDFIENWVKIGASARNKIK 186 (258)
T ss_pred EEeccccccCCccccccccchhHHHHHHHHhCCCEEEEecCCCchHHHHHHhccccccccccchHHHHHHHHHHHHHHHH
Confidence 689999999998764445688999999999999999999999999999998642221 1224689999999999987655
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHcCceEEEEEEEEcccCEEEEeeccCCCCCC
Q 031959 80 KECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNILPS 147 (150)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~v~~g~l~V~G~~Ydi~tG~v~~~~~~~~~~~~ 147 (150)
......++.+..+.++++||++|+++|+++|+|++++++|++.||||+||++||+|++++++.+.-|.
T Consensus 187 ~~~~~~~~~~~~~~~e~~nV~~qv~~L~~~P~V~~~v~~g~l~I~G~~Ydl~TG~v~~~~~~~~~~p~ 254 (258)
T PLN00416 187 EEHKDLSYDDQCNKCEKEAVNVSLGNLLSYPFVRAEVVKNTLAIRGGHYNFVKGTFDLWELDFKTTPA 254 (258)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCCceEEEeccCcCCCCC
Confidence 44444455555566778999999999999999999999999999999999999999999988765543
No 4
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=2e-39 Score=244.94 Aligned_cols=137 Identities=48% Similarity=0.769 Sum_probs=116.8
Q ss_pred CccccccccCCCCCC-cccchHHHHHHHHhhcCcceEEEeecCCchhhhhhhcCCCCCCCCchhHHHHHHhhHHHHHHHH
Q 031959 1 MVRNIANMVPPYDQK-KYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVK 79 (150)
Q Consensus 1 ViRNaGN~v~~~~~~-~~~~~~asleyav~~L~v~~IvV~GHt~CGav~aa~~~~~~~~~~~~~i~~~l~~~~~a~~~~~ 79 (150)
|+||+||+|++++.+ ..+++++|||||+.+|++++|||||||+||||+|+++... +....+++..|++.+.|++....
T Consensus 53 v~Rn~gn~v~~~~~~~~~~~~~asleyav~~l~v~~ivV~GH~~Cgav~Aa~~~~~-~~~~~~~l~~wl~~i~~~~~~~~ 131 (190)
T cd00884 53 VVRNVGNLVPPYEPDGGFHGTSAAIEYAVAVLKVEHIVVCGHSDCGGIRALLSPED-LLDKLPFIGKWLRIAEPAKEVVL 131 (190)
T ss_pred EEeccCCcCCcccccccccchhhhHHHHHHHhCCCEEEEeCCCcchHHHHHhcccc-ccCCcchHHHHHHHHHHHHHHHH
Confidence 689999999987542 2356899999999999999999999999999999987543 12335689999999999988765
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHcCceEEEEEEEEcccCEEEEe
Q 031959 80 KECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELW 138 (150)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~v~~g~l~V~G~~Ydi~tG~v~~~ 138 (150)
...+..+..+..+.+++.||++|+++|+++|+|++++++|+|+||||+||++||+|+.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~NV~~qv~~L~~~p~v~~~v~~g~l~i~G~~Ydi~tG~v~~~ 190 (190)
T cd00884 132 AELSHADFDDQLRALEKENVLLSLENLLTYPFVRERLEAGTLSLHGWYYDIETGELYAY 190 (190)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCceEEEeC
Confidence 54444455666788999999999999999999999999999999999999999999864
No 5
>PRK10437 carbonic anhydrase; Provisional
Probab=100.00 E-value=9.4e-39 Score=245.41 Aligned_cols=136 Identities=22% Similarity=0.324 Sum_probs=117.4
Q ss_pred CccccccccCCCCCCcccchHHHHHHHHhhcCcceEEEeecCCchhhhhhhcCCCCCCCCchhHHHHHHhhHHHHHHHHH
Q 031959 1 MVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKK 80 (150)
Q Consensus 1 ViRNaGN~v~~~~~~~~~~~~asleyav~~L~v~~IvV~GHt~CGav~aa~~~~~~~~~~~~~i~~~l~~~~~a~~~~~~ 80 (150)
|+||+||+|+++|.+ +++|||||+.+|||++|||||||+||||+|+++... .++++.|++.++|++.....
T Consensus 62 v~Rn~gn~v~~~~~~----~~~~leyAV~~L~v~~IvV~GHt~CG~V~Aal~~~~-----~~~i~~wl~~i~~~~~~~~~ 132 (220)
T PRK10437 62 VHRNVANLVIHTDLN----CLSVVQYAVDVLEVEHIIICGHYGCGGVQAAVENPE-----LGLINNWLLHIRDIWFKHSS 132 (220)
T ss_pred EEeecccccCCCCcc----hHHHHHHHHHHcCCCEEEEeCCCCchHHHHHHcCCC-----cccHHHHHHHHHHHHHHHHH
Confidence 689999999987653 789999999999999999999999999999986432 36899999999999876544
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHcC-ceEEEEEEEEcccCEEEEeeccCCCC
Q 031959 81 ECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKN-TLALKGAHYDFVNGKFELWDLDFNIL 145 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~v~~g-~l~V~G~~Ydi~tG~v~~~~~~~~~~ 145 (150)
.....+..+..+.+++.||++|+++|+++|+|++++++| +|+||||+||++||+|++++.....+
T Consensus 133 ~~~~~~~~~~~~~l~e~NV~~qv~~L~~~p~v~~~~~~g~~l~IhG~~Ydl~tG~v~~l~~~~~~~ 198 (220)
T PRK10437 133 LLGEMPQERRLDTLCELNVMEQVYNLGHSTIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATNR 198 (220)
T ss_pred HhccCChHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHCCCceEEEEEEEECCCcEEEEecCCCCch
Confidence 444445566778899999999999999999999999999 69999999999999999997655443
No 6
>PLN03006 carbonate dehydratase
Probab=100.00 E-value=1.2e-38 Score=252.98 Aligned_cols=144 Identities=45% Similarity=0.856 Sum_probs=121.4
Q ss_pred CccccccccCCCCCCcccchHHHHHHHHhhcCcceEEEeecCCchhhhhhhcCCCCCCCCchhHHHHHHhhHHHHHHHHH
Q 031959 1 MVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKK 80 (150)
Q Consensus 1 ViRNaGN~v~~~~~~~~~~~~asleyav~~L~v~~IvV~GHt~CGav~aa~~~~~~~~~~~~~i~~~l~~~~~a~~~~~~ 80 (150)
|+|||||+|+|+|... .++++|||||+.+|||++|||||||+||||+|++.....+ ...++|++|+..++|++.....
T Consensus 140 VVRNaGNiVpp~d~~~-~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~g-~~~~~I~~wv~~~~~a~~~v~~ 217 (301)
T PLN03006 140 TVRNIANLVPPYESGP-TETKAALEFSVNTLNVENILVIGHSRCGGIQALMKMEDEG-DSRSFIHNWVVVGKKAKESTKA 217 (301)
T ss_pred EEeccccccCCccccc-cchhhhHHHHHHHhCCCEEEEecCCCchHHHHHhhccccC-CchhHHHHHHHHHHHHHHHHhh
Confidence 6899999999987532 4688999999999999999999999999999998754433 2457899999988888766543
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHcCceEEEEEEEEcccCEEEEeeccCCCCC
Q 031959 81 ECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNILP 146 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~v~~g~l~V~G~~Ydi~tG~v~~~~~~~~~~~ 146 (150)
.....++.++.+.++++||++|+++|+++|+|++++++|+|.||||+||+.||+++.++++.++-.
T Consensus 218 ~~~~~~~~~~~~~~ekeNV~~sv~nL~~~P~V~~~v~~G~L~IhG~~Ydi~tG~l~~~~~~~~~~~ 283 (301)
T PLN03006 218 VASNLHFDHQCQHCEKASINHSLERLLGYPWIEEKVRQGSLSLHGGYYNFVDCTFEKWTVDYAASR 283 (301)
T ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCCceEEEecccccccc
Confidence 222334566677788899999999999999999999999999999999999999999998875543
No 7
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=1.6e-38 Score=238.86 Aligned_cols=129 Identities=29% Similarity=0.443 Sum_probs=110.3
Q ss_pred CccccccccCCCCCCcccchHHHHHHHHhhcCcceEEEeecCCchhhhhhhcCCCCCCCCchhHHHHHHhhHHHHHHHHH
Q 031959 1 MVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKK 80 (150)
Q Consensus 1 ViRNaGN~v~~~~~~~~~~~~asleyav~~L~v~~IvV~GHt~CGav~aa~~~~~~~~~~~~~i~~~l~~~~~a~~~~~~ 80 (150)
|+||+||+|++++. ++++|||||+.+||+++|||||||+||||+|+++.. ..+.+.+|++.+++++.....
T Consensus 52 ViRnaGN~v~~~~~----~~~asleyAv~~L~v~~IvV~GHs~CGav~a~~~~~-----~~~~~~~wl~~~~~~~~~~~~ 122 (182)
T cd00883 52 VHRNIANLVSPTDL----NCLSVLQYAVDVLKVKHIIVCGHYGCGGVKAALTGK-----RLGLLDNWLRPIRDVYRLHAA 122 (182)
T ss_pred EEEeeccccCCCCc----chhhhHHHHHHhcCCCEEEEecCCCchHHHHHHcCC-----CCccHHHHHHHHHHHHHHHHH
Confidence 68999999999764 478999999999999999999999999999998643 247899999999988765433
Q ss_pred hcCCC-ChHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHc-CceEEEEEEEEcccCEEEEe
Q 031959 81 ECNDL-SFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVK-NTLALKGAHYDFVNGKFELW 138 (150)
Q Consensus 81 ~~~~~-~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~v~~-g~l~V~G~~Ydi~tG~v~~~ 138 (150)
.+... +..+..+.++++||++|+++|+++|+|++++++ |++.||||+||++||+|+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~~~~~~~l~I~G~~ydi~tG~v~~~ 182 (182)
T cd00883 123 ELDALEDEEERVDRLVELNVVEQVKNLCKTPIVQDAWKRGQELEVHGWVYDLGDGLLRDL 182 (182)
T ss_pred HhcccCCHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHcCCCeEEEEEEEEcCccEEEeC
Confidence 33222 445566788999999999999999999999999 89999999999999999864
No 8
>PLN02154 carbonic anhydrase
Probab=100.00 E-value=1.6e-36 Score=239.53 Aligned_cols=146 Identities=38% Similarity=0.692 Sum_probs=118.5
Q ss_pred CccccccccCCCCCCcccchHHHHHHHHhhcCcceEEEeecCCchhhhhhhcCCCCCCCCchhHHHHHHhhHHHHHHHHH
Q 031959 1 MVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKK 80 (150)
Q Consensus 1 ViRNaGN~v~~~~~~~~~~~~asleyav~~L~v~~IvV~GHt~CGav~aa~~~~~~~~~~~~~i~~~l~~~~~a~~~~~~ 80 (150)
|+||+||+|++++.. ..++++|||||+.+|||++|||||||+||||+|+++.........+++++|+..++++......
T Consensus 134 vvRN~GNiv~~~~~g-~~~~~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal~~~~~~~~~~~~v~~Wl~~~~~a~~~~~~ 212 (290)
T PLN02154 134 TIRNVANLVTPVQNG-PTETNSALEFAVTTLQVENIIVMGHSNCGGIAALMSHQNHQGQHSSLVERWVMNGKAAKLRTQL 212 (290)
T ss_pred EEeccCCccCCccCC-ccchhhHHHHHHHHhCCCEEEEecCCCchHHHHHHhcCccccccchHHHHHHHHHHHHHHHHhh
Confidence 689999999997642 1358899999999999999999999999999999875322223357899999887776654322
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHcCceEEEEEEEEcccCEEEEeeccCCCCCC
Q 031959 81 ECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNILPS 147 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~v~~g~l~V~G~~Ydi~tG~v~~~~~~~~~~~~ 147 (150)
..+..++.+..+.++++||++|+++|+++|+|++++++|+|+||||+||++||+|+.++.....|-+
T Consensus 213 ~~~~~~~~~~~~~~e~~NV~~qv~nL~t~P~I~e~v~~G~L~IhG~~Ydl~tG~l~~~~~~~~~f~~ 279 (290)
T PLN02154 213 ASSHLSFDEQCRNCEKESIKDSVMNLITYSWIRDRVKRGEVKIHGCYYNLSDCSLEKWRLSSDKTNY 279 (290)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCceEEEeccccCcccC
Confidence 2222344555567788999999999999999999999999999999999999999999988766644
No 9
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-37 Score=234.98 Aligned_cols=141 Identities=26% Similarity=0.408 Sum_probs=117.8
Q ss_pred CccccccccCCCCCCcccchHHHHHHHHhhcCcceEEEeecCCchhhhhhhcCCCCCCCCchhHHHHHHhhHHHHHHHHH
Q 031959 1 MVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKK 80 (150)
Q Consensus 1 ViRNaGN~v~~~~~~~~~~~~asleyav~~L~v~~IvV~GHt~CGav~aa~~~~~~~~~~~~~i~~~l~~~~~a~~~~~~ 80 (150)
|+|||||+|++++. ++++|||||+.+|||++|||||||+||||+|+++....+.. .+..|+..+++.......
T Consensus 63 V~RNaGniV~~~~~----~~l~sleyAv~~L~v~~IiV~GH~~CGav~aa~~~~~~~~~---~i~~wl~~i~~~~~~~~~ 135 (207)
T COG0288 63 VIRNAGNIVTHPDG----SVLRSLEYAVYVLGVKEIIVCGHTDCGAVKAALDDQLEGLK---PIPGWLLHIEDLAYAVSN 135 (207)
T ss_pred EEeecccccCCCcc----chhHHHHHHHHHcCCCEEEEecCCCcHHHHhcccccccccc---ccchhhhHHHHHHHHhhc
Confidence 68999999998763 58999999999999999999999999999999987665432 688999888887765544
Q ss_pred hcCCCChH-HHHHHHHHHHHHHHHHHhhcCHHHHHHHHcCc-eEEEEEEEEcccCEEEEeeccCCCCCCC
Q 031959 81 ECNDLSFE-EQCKNCEKEAVNVSLGNLLTYPFVRESVVKNT-LALKGAHYDFVNGKFELWDLDFNILPSV 148 (150)
Q Consensus 81 ~~~~~~~~-~~~~~~~~~nV~~~v~~L~~~p~i~~~v~~g~-l~V~G~~Ydi~tG~v~~~~~~~~~~~~~ 148 (150)
..+..... ++.+..++.||++|+++|+.+|.+++++..++ +.||||+||++||+++.++.....+++.
T Consensus 136 ~~~~~~~~~~~~~~~~e~nV~~qv~~L~~~p~v~~~~~~~~~l~vhG~~y~i~~G~l~~~~~~~~~~~~~ 205 (207)
T COG0288 136 LLGELPGEEDRSDELVEDNVREQVANLRTHPIVQSALVRGQKVAVHGWVYDIETGRLYVVDVATIDFEAL 205 (207)
T ss_pred chhhccchhhhhhhHHHHHHHHHHHHHhcCCchhhhhhcCceEEEEEEEEecCCceEEEEeccccccccC
Confidence 32222222 55567788999999999999999999998887 9999999999999999998888776653
No 10
>PRK15219 carbonic anhydrase; Provisional
Probab=100.00 E-value=4e-36 Score=234.24 Aligned_cols=126 Identities=17% Similarity=0.299 Sum_probs=107.7
Q ss_pred CccccccccCCCCCCcccchHHHHHHHHhhcCcceEEEeecCCchhhhhhhcCCCCCCCCchhHHHHHHhhHHHHHHHHH
Q 031959 1 MVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKK 80 (150)
Q Consensus 1 ViRNaGN~v~~~~~~~~~~~~asleyav~~L~v~~IvV~GHt~CGav~aa~~~~~~~~~~~~~i~~~l~~~~~a~~~~~~ 80 (150)
|+||+||+++++ +++|||||+.+||+++|||||||+||||+|+++... .+++..|++.++|++.....
T Consensus 117 vvRnaGN~v~~~-------~~~slEyAv~~L~v~~IvVlGHt~CGav~Aa~~~~~-----~g~l~~wl~~i~pa~~~~~~ 184 (245)
T PRK15219 117 NSRVAGNISNDD-------LLGSMEFACAVAGAKVVLVMGHTACGAVKGAIDNVE-----LGNLTGLLDRIKPAIEVTEF 184 (245)
T ss_pred EEeccccccCcc-------hhhHHHHHHHHcCCCEEEEecCCcchHHHHHHhcCC-----cchHHHHHHHHHHHHHHHhh
Confidence 689999999763 689999999999999999999999999999987532 46899999999999876432
Q ss_pred hc-CCCChHHHHHHHHHHHHHHHHHHhh-cCHHHHHHHHcCceEEEEEEEEcccCEEEEe
Q 031959 81 EC-NDLSFEEQCKNCEKEAVNVSLGNLL-TYPFVRESVVKNTLALKGAHYDFVNGKFELW 138 (150)
Q Consensus 81 ~~-~~~~~~~~~~~~~~~nV~~~v~~L~-~~p~i~~~v~~g~l~V~G~~Ydi~tG~v~~~ 138 (150)
.. ...+..+..+.++++||+.|+++|+ ++|++++++++|+|+||||+||++||+|+++
T Consensus 185 ~~~~~~~~~~~~~~~~~~NV~~qv~~L~~~~pv~~~~v~~g~l~I~G~~Ydl~tG~V~~l 244 (245)
T PRK15219 185 DGERSSKNYKFVDAVARKNVELTIENIRKNSPILRKLEQEGKIKIVGSMYNLNGGKVEFF 244 (245)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCeEEEee
Confidence 11 1123345667889999999999998 4899999999999999999999999999997
No 11
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=100.00 E-value=2.7e-36 Score=220.43 Aligned_cols=127 Identities=33% Similarity=0.542 Sum_probs=100.3
Q ss_pred CccccccccCCCCCCcccchHHHHHHHHhhcCcceEEEeecCCchhhhhhhcCCCCCCCCchhHHHHHHhhHHHHHH-HH
Q 031959 1 MVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSK-VK 79 (150)
Q Consensus 1 ViRNaGN~v~~~~~~~~~~~~asleyav~~L~v~~IvV~GHt~CGav~aa~~~~~~~~~~~~~i~~~l~~~~~a~~~-~~ 79 (150)
|+||+||++++.+. ++++|||||+.+||+++|+|||||+|||++++++... ..+.+.+|++.++|+... ..
T Consensus 26 viRnaGn~v~~~~~----~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~~~~~----~~~~l~~~l~~~~~~~~~~~~ 97 (153)
T PF00484_consen 26 VIRNAGNRVPPPDD----SALASLEYAVYHLGVKEIIVCGHTDCGAIKAALDSEE----EDGFLRDWLQKIRPALEECVD 97 (153)
T ss_dssp EEEETTG---TT-H----HHHHHHHHHHHTST-SEEEEEEETT-HHHHHHHHHSH----TCSHHHHHHHHHHHHHHHTHH
T ss_pred eeeEEeeecCcccc----chhhheeeeeecCCCCEEEEEcCCCchHHHHHHhhcc----ccchHHHHHHhhhhhHHHHHH
Confidence 58999999998753 5899999999999999999999999999999876322 246899999999998876 33
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHcCceEEEEEEEEcccCEE
Q 031959 80 KECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKF 135 (150)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~v~~g~l~V~G~~Ydi~tG~v 135 (150)
+........+.....+++||++|+++|+++|+|++++++|++.|+||+||++||+|
T Consensus 98 ~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~~~~~~l~v~G~~ydi~tG~v 153 (153)
T PF00484_consen 98 ELLPSSWDFEDLDDLVEENVRQQVENLRSHPLIPDAVAKGKLKVHGFVYDIKTGKV 153 (153)
T ss_dssp HHHTTSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSEEEEEEEETTTTEE
T ss_pred HhhcccccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHCCCCEEEEEEEECCCccC
Confidence 22222222333345589999999999999999999999999999999999999986
No 12
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.97 E-value=7.3e-32 Score=190.06 Aligned_cols=90 Identities=41% Similarity=0.685 Sum_probs=83.7
Q ss_pred CccccccccCCCCCCcccchHHHHHHHHhhcCcceEEEeecCCchhhhhhhcCCCCCCCCchhHHHHHHhhHHHHHHHHH
Q 031959 1 MVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKK 80 (150)
Q Consensus 1 ViRNaGN~v~~~~~~~~~~~~asleyav~~L~v~~IvV~GHt~CGav~aa~~~~~~~~~~~~~i~~~l~~~~~a~~~~~~ 80 (150)
|+||+||++++++. ++++|||||+..||+++|+|||||+|||+++
T Consensus 30 v~Rn~Gn~v~~~~~----~~~~sl~~av~~l~v~~ivV~gHt~CG~v~a------------------------------- 74 (119)
T cd00382 30 VVRNAGNLVPPYDL----DVLASLEYAVEVLGVKHIIVCGHTDCGAVKA------------------------------- 74 (119)
T ss_pred EEeccCCcCCCCcc----cHHHHHHHHHHhhCCCEEEEEccCCCcHHHH-------------------------------
Confidence 58999999998754 4899999999999999999999999999997
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHcCceEEEEEEEEcccCEEEEe
Q 031959 81 ECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELW 138 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~v~~g~l~V~G~~Ydi~tG~v~~~ 138 (150)
..++||++|+++|+++|+++++++++++.||||+||++||+++++
T Consensus 75 -------------~~~~nV~~~v~~L~~~p~i~~a~~~~~l~V~G~~ydi~tG~v~~~ 119 (119)
T cd00382 75 -------------LVEENVREQVENLRSHPLIQEAVAPGELKVHGWVYDIETGKLEVL 119 (119)
T ss_pred -------------HHHHHHHHHHHHHHhCHHHHHHHHCCCCEEEEEEEECCCCEEEeC
Confidence 346799999999999999999999999999999999999999874
No 13
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.97 E-value=2.2e-31 Score=194.82 Aligned_cols=88 Identities=31% Similarity=0.466 Sum_probs=81.6
Q ss_pred CccccccccCCCCCCcccchHHHHHHHHhhcCcceEEEeecCCchhhhhhhcCCCCCCCCchhHHHHHHhhHHHHHHHHH
Q 031959 1 MVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKK 80 (150)
Q Consensus 1 ViRNaGN~v~~~~~~~~~~~~asleyav~~L~v~~IvV~GHt~CGav~aa~~~~~~~~~~~~~i~~~l~~~~~a~~~~~~ 80 (150)
|+||+||++++. +++|||||+.+||+++|||||||+||+++++
T Consensus 66 viRn~gn~v~~~-------~~~sl~yav~~l~v~~IvV~GHt~CG~~~a~------------------------------ 108 (154)
T cd03378 66 VVRVAGNIVDDD-------VLGSLEYAVEVLGVPLVVVLGHESCGAVAAA------------------------------ 108 (154)
T ss_pred EEeccccccChh-------HHHHHHHHHHHhCCCEEEEEcCCCccHHHHH------------------------------
Confidence 689999999873 6899999999999999999999999999986
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHHhhcCHHHHH-HHHcCceEEEEEEEEcccCEEEEe
Q 031959 81 ECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRE-SVVKNTLALKGAHYDFVNGKFELW 138 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~-~v~~g~l~V~G~~Ydi~tG~v~~~ 138 (150)
++++||++|+++|+++|+|++ ++++|++.||||+||++||+|+|+
T Consensus 109 -------------~~~~nV~~~v~~L~~~p~i~~~~~~~g~l~v~G~vyd~~tG~v~~~ 154 (154)
T cd03378 109 -------------AVRANVKATVAKLRSRSPIIAELVAAGKLKIVGAYYDLDTGKVEFL 154 (154)
T ss_pred -------------HHHHHHHHHHHHHHhCCHHHHHHHHcCCcEEEEEEEECCCcEEEeC
Confidence 346899999999999998888 999999999999999999999984
No 14
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.96 E-value=1.5e-29 Score=183.28 Aligned_cols=113 Identities=22% Similarity=0.230 Sum_probs=84.4
Q ss_pred CccccccccCCCCCCcccchHHHHHHHHhhcCcceEEEeecCCchhhhhhhcCCCCCCCCchhHHHHHHhhHHHHHHHHH
Q 031959 1 MVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKK 80 (150)
Q Consensus 1 ViRNaGN~v~~~~~~~~~~~~asleyav~~L~v~~IvV~GHt~CGav~aa~~~~~~~~~~~~~i~~~l~~~~~a~~~~~~ 80 (150)
|+|||||+|++. +++||+||+.+||+++|+|||||+|||++++.+ .+..|+......... .
T Consensus 30 viRnaGn~V~~~-------~~~sl~~av~~l~~~~IiV~gHt~Cg~~~a~~~----------~~~~~~~~~~~~~~~--~ 90 (142)
T cd03379 30 VIRNAGGRVTDD-------AIRSLVVSVYLLGTREIIVIHHTDCGMLTFTDE----------ELKEKMKERGIAEAY--G 90 (142)
T ss_pred EEeccCCccCHh-------HHHHHHHHHHHhCCCEEEEEeecCCcceEecHH----------HHHHHHHHhcCcchh--c
Confidence 589999999973 689999999999999999999999999998754 234455431100000 0
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHcCceEEEEEEEEcccCEEEEe
Q 031959 81 ECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELW 138 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~v~~g~l~V~G~~Ydi~tG~v~~~ 138 (150)
. .............++||++|+++|+++|++++ +++||||+||++||+++.+
T Consensus 91 ~-~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~-----~i~V~G~~ydi~tG~v~~v 142 (142)
T cd03379 91 G-IDKEFWFLGFDDLEESVREDVERIRNHPLIPD-----DVPVHGYVYDVKTGKLTEV 142 (142)
T ss_pred c-cCcchhhcccccHHHHHHHHHHHHHhCcCccC-----CCEEEEEEEECCCCEEEeC
Confidence 0 00111111234568999999999999999998 8999999999999999863
No 15
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.2e-25 Score=173.39 Aligned_cols=140 Identities=55% Similarity=0.922 Sum_probs=122.4
Q ss_pred CccccccccCCCCCCcccchHHHHHHHHhhcCcceEEEeecCCchhhhhhhcCCCCCCCCchhHHHHHHhhHHHHHHHHH
Q 031959 1 MVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKK 80 (150)
Q Consensus 1 ViRNaGN~v~~~~~~~~~~~~asleyav~~L~v~~IvV~GHt~CGav~aa~~~~~~~~~~~~~i~~~l~~~~~a~~~~~~ 80 (150)
++||++|+++|.|.+....+.|+|||++.+|+++.|+||||+.||++++.+.....++ ..+++.+|.-.-.++.....+
T Consensus 121 ~irniaNlv~p~~~~~~~~~~AalE~aV~~lkvenIiv~ghs~cgGik~~m~~~~~~~-~~~f~~~wv~id~~~kl~~e~ 199 (276)
T KOG1578|consen 121 AIRNIANLVPPPDKSKPTNVGAALEYAVTTLKVENIIVIGHSLCGGIKGLMSFSLEAP-SRSFIENWVYIDPEAKLAVED 199 (276)
T ss_pred HHHHHHhccCcccccCcccccchHHHHHHHhccceEEEeccccCCchhhcccccccCc-chhhhhhheeeChHHHHHHHh
Confidence 5899999999988776777889999999999999999999999999999887655444 467888898665566666555
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHcCceEEEEEEEEcccCEEEEeecc
Q 031959 81 ECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLD 141 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~v~~g~l~V~G~~Ydi~tG~v~~~~~~ 141 (150)
.+..+++.+++..++.+.+..++.+|.++|++++++..|.+.++|++||...|..+++..+
T Consensus 200 ~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~~vr~~v~k~~l~~~G~~Y~fskg~~~~~~ld 260 (276)
T KOG1578|consen 200 KLSQINFLQQCENCESEAFLVSLARLLSYPFVREAVVKGFLQVHGGYYNFSKGTKEFWELD 260 (276)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHhhcceeeeeeeEEeccCceeEEEec
Confidence 5556778888888888999999999999999999999999999999999999999999998
No 16
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=92.42 E-value=0.08 Score=42.12 Aligned_cols=70 Identities=21% Similarity=0.257 Sum_probs=47.1
Q ss_pred CccccccccCCCCC----C-cccchHHHHHHHHhhcCcceEEEeecCCchhhhhhhcCCCCC--CCC---chhHHHHHHh
Q 031959 1 MVRNIANMVPPYDQ----K-KYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNG--TTA---SDFIEEWVKI 70 (150)
Q Consensus 1 ViRNaGN~v~~~~~----~-~~~~~~asleyav~~L~v~~IvV~GHt~CGav~aa~~~~~~~--~~~---~~~i~~~l~~ 70 (150)
|.||.||..++... . ..+--...|+-|+..-...+|++|||++|-+++....-.... ..+ .+.++-|+..
T Consensus 71 v~~~~~~~~~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~ 150 (276)
T KOG1578|consen 71 VVRNSGNYIPNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTT 150 (276)
T ss_pred hhhccccCCCChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHH
Confidence 57899999987532 0 011123457778888889999999999999999865543311 112 2567888775
No 17
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=76.45 E-value=2.4 Score=28.41 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=18.4
Q ss_pred ceEEEEEEEEcccCEEEEeec
Q 031959 120 TLALKGAHYDFVNGKFELWDL 140 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~ 140 (150)
++.|+||++++++|.|+.+..
T Consensus 29 ~lgl~G~V~N~~DGsVeiva~ 49 (92)
T COG1254 29 RLGLTGWVKNLDDGSVEIVAE 49 (92)
T ss_pred HCCCEEEEEECCCCeEEEEEE
Confidence 567999999999999998754
No 18
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=67.27 E-value=2.1 Score=27.99 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=13.8
Q ss_pred EEEEEEEEcccCEEEEe
Q 031959 122 ALKGAHYDFVNGKFELW 138 (150)
Q Consensus 122 ~V~G~~Ydi~tG~v~~~ 138 (150)
..|||.||++||++...
T Consensus 65 p~Hg~~Fd~~tG~~~~~ 81 (97)
T PF00355_consen 65 PCHGWRFDLDTGECVGG 81 (97)
T ss_dssp TTTTEEEETTTSBEEES
T ss_pred CCcCCEEeCCCceEecC
Confidence 46899999999996543
No 19
>PF08184 Cuticle_2: Cuticle protein 7 isoform family; InterPro: IPR012540 This family consists of cuticle protein 7 isoforms that are isolated from the carapace cuticle of a juvenile horseshoe crab, Limulus polyphemus. There are 3 isoforms of cuticle protein 7. The 3 isoforms are N-terminally blocked but could be deblocked by treatment with pyroglutaminase, showing that the N-terminal residue is a pyroglutamine residue [].; GO: 0042302 structural constituent of cuticle
Probab=63.87 E-value=3.6 Score=24.23 Aligned_cols=13 Identities=31% Similarity=0.652 Sum_probs=11.0
Q ss_pred EEEEEEcccCEEE
Q 031959 124 KGAHYDFVNGKFE 136 (150)
Q Consensus 124 ~G~~Ydi~tG~v~ 136 (150)
-|.-||++||.|.
T Consensus 7 ngytydietgqvs 19 (59)
T PF08184_consen 7 NGYTYDIETGQVS 19 (59)
T ss_pred CCcEEEeccceec
Confidence 3788999999975
No 20
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=61.27 E-value=15 Score=22.47 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=22.9
Q ss_pred HHHHHhhcCHHHHHHHHcCceEEEEE
Q 031959 101 VSLGNLLTYPFVRESVVKNTLALKGA 126 (150)
Q Consensus 101 ~~v~~L~~~p~i~~~v~~g~l~V~G~ 126 (150)
.-|..|.++|-+-+.+++|+..+.|.
T Consensus 4 ~iV~YLv~nPevl~kl~~g~asLIGv 29 (57)
T PF05952_consen 4 EIVNYLVQNPEVLEKLKEGEASLIGV 29 (57)
T ss_pred HHHHHHHHChHHHHHHHcCCeeEecC
Confidence 35778999999999999999999886
No 21
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=59.61 E-value=3.5 Score=26.97 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=13.7
Q ss_pred eEEEEEEEEcccCEEE
Q 031959 121 LALKGAHYDFVNGKFE 136 (150)
Q Consensus 121 l~V~G~~Ydi~tG~v~ 136 (150)
...|||.||++||++.
T Consensus 60 Cp~Hg~~fd~~~G~~~ 75 (98)
T cd03528 60 CPLHGGRFDLRTGKAL 75 (98)
T ss_pred eCCcCCEEECCCCccc
Confidence 4589999999999864
No 22
>PF01707 Peptidase_C9: Peptidase family C9; InterPro: IPR002620 The family of alphaviruses includes 26 known members. They infect a variety of hosts including mosquitoes, birds, rodents and other mammals with worldwide distribution. Alphaviruses also pose a potential threat to human health in many area. For example, Venezuelan Equine Encephalitis Virus (VEEV) causes encephalitis in humans as well as livestock in Central and South America, and some variants of Sinbis Virus (SIN) and Semliki Forest Virus (SFV) have been found to cause fever and arthritis in humans []. Alphaviruses possess a single-stranded RNA genome of approximately 12 kb. The genomic RNA of alphaviruses is translated into two polyproteins that, respectively, encode structural proteins and nonstructural proteins. The nonstructural proteins may be translated as one or two polyproteins, nsp123 or nsp1234, depending on the virus. These polyproteins are cleaved to generate nsp1, nsp2, nsp3 and nsp4 by a protease activity that resides within nsp2 []. The nsp2 protein of alphaviruses has multiple enzymatic acivities. Its N-terminal domain has been shown to possess ATPase and GTPase activity, RNA helicase activity and RNA 5'-triphosphatase activity []. The C-terminal nsp2pro domain of nsp2 is responsible for the regulation of 26S subgenome RNA synthesis, switching between negative- and positive-strand RNA synthesis, targeting nsp2 for nuclear transport and proteolytic processing of the nonstructural polyprotein [, ]. The nsp2pro domain is a member of peptidase family C9 of clan CA. The nsp2pro domain consists of two distinct subdomains. The nsp2pro N-terminal subdomain is largely alpha-helical and contains the catalytic dyad cysteine and histidine residues organised in a protein fold that differs significantly from any known cysteine protease or protein folds. The nsp2pro C-terminal subdomain displays structural similarity to S-adenosyl- L-methionine-dependent RNA methyltransferases and provides essential elements that contribute to substrate recognition and may also regulate the structure of the substrate binding cleft []. This entry represents the nsp2pro domain.; PDB: 3TRK_A 2HWK_A.
Probab=58.78 E-value=3 Score=31.71 Aligned_cols=40 Identities=25% Similarity=0.535 Sum_probs=26.4
Q ss_pred HHHHHh-hcCHHHHHHHHcCceEEEEEEEEcccCEEEEeeccCCCCC
Q 031959 101 VSLGNL-LTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNILP 146 (150)
Q Consensus 101 ~~v~~L-~~~p~i~~~v~~g~l~V~G~~Ydi~tG~v~~~~~~~~~~~ 146 (150)
+.+++| +.+|+++.+++. |-.+|+.||+++.++..-.+-|
T Consensus 135 ~v~~~l~~r~P~l~~a~~~------g~q~dv~~g~~~~~~~~~N~VP 175 (202)
T PF01707_consen 135 EVARELERRYPFLRKAWKT------GRQLDVSTGRLQPYSPTCNLVP 175 (202)
T ss_dssp HHHHHHHCC-CCHCCHCCC------T-EEETTTTCEES--TTS--S-
T ss_pred HHHHHHHHhCchhhhcccc------CeeEeecCCceecCCCcccccc
Confidence 345677 489999998876 5679999999999887765544
No 23
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=57.89 E-value=3.3 Score=27.11 Aligned_cols=16 Identities=25% Similarity=0.540 Sum_probs=13.5
Q ss_pred eEEEEEEEEcccCEEE
Q 031959 121 LALKGAHYDFVNGKFE 136 (150)
Q Consensus 121 l~V~G~~Ydi~tG~v~ 136 (150)
...|||.||++||++.
T Consensus 59 CP~Hg~~Fdl~tG~~~ 74 (95)
T cd03478 59 CPWHGACFNLRTGDIE 74 (95)
T ss_pred cCCCCCEEECCCCcCc
Confidence 4589999999999854
No 24
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=56.57 E-value=5.8 Score=28.05 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=15.0
Q ss_pred eEEEEEEEEcccCEEEEe
Q 031959 121 LALKGAHYDFVNGKFELW 138 (150)
Q Consensus 121 l~V~G~~Ydi~tG~v~~~ 138 (150)
..-|||.||++||++.-+
T Consensus 76 Cp~Hgw~Fdl~tG~~~~~ 93 (136)
T cd03548 76 CWYHGWTYRLDDGKLVTI 93 (136)
T ss_pred ecCCccEEeCCCccEEEc
Confidence 447999999999998754
No 25
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=55.24 E-value=19 Score=23.19 Aligned_cols=26 Identities=19% Similarity=-0.014 Sum_probs=20.2
Q ss_pred ceEEEEEEEEccc--CEEEEeeccCCCC
Q 031959 120 TLALKGAHYDFVN--GKFELWDLDFNIL 145 (150)
Q Consensus 120 ~l~V~G~~Ydi~t--G~v~~~~~~~~~~ 145 (150)
++.|+||++.+.. |++.|++++..-+
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~LrD~~g 28 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADLRDPNG 28 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEEECCCC
Confidence 3679999999987 6888888765443
No 26
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=54.78 E-value=5.1 Score=26.72 Aligned_cols=16 Identities=13% Similarity=0.275 Sum_probs=13.5
Q ss_pred eEEEEEEEEcccCEEE
Q 031959 121 LALKGAHYDFVNGKFE 136 (150)
Q Consensus 121 l~V~G~~Ydi~tG~v~ 136 (150)
...|||.||++||+..
T Consensus 62 CP~Hg~~Fdl~tG~~~ 77 (101)
T TIGR02377 62 CPKHAGCFDYRTGEAL 77 (101)
T ss_pred CCccCCEEECCCCccc
Confidence 4589999999999854
No 27
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=53.65 E-value=8.4 Score=28.21 Aligned_cols=13 Identities=46% Similarity=0.861 Sum_probs=11.9
Q ss_pred cceEEEeecCCch
Q 031959 33 VENIVVIGHSCCG 45 (150)
Q Consensus 33 v~~IvV~GHt~CG 45 (150)
+..|.|+||.+||
T Consensus 3 ~~~I~i~G~~~sG 15 (188)
T PF00009_consen 3 IRNIAIIGHVDSG 15 (188)
T ss_dssp EEEEEEEESTTSS
T ss_pred EEEEEEECCCCCC
Confidence 5689999999999
No 28
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=52.76 E-value=4.9 Score=26.84 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=13.3
Q ss_pred eEEEEEEEEcccCEEE
Q 031959 121 LALKGAHYDFVNGKFE 136 (150)
Q Consensus 121 l~V~G~~Ydi~tG~v~ 136 (150)
...|||.||++||+..
T Consensus 66 Cp~Hg~~Fdl~tG~~~ 81 (103)
T cd03529 66 SPLYKQHFSLKTGRCL 81 (103)
T ss_pred CCCCCCEEEcCCCCcc
Confidence 3479999999999953
No 29
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=52.26 E-value=7.8 Score=30.13 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=30.8
Q ss_pred HHHHhhc-CHHHHHHHHcCceEEEEEEEEcccCEEEEeeccCCCCC
Q 031959 102 SLGNLLT-YPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNILP 146 (150)
Q Consensus 102 ~v~~L~~-~p~i~~~v~~g~l~V~G~~Ydi~tG~v~~~~~~~~~~~ 146 (150)
|..+|+. -|.-++.|... -.|+=.+||.+||..+++-.+++|.+
T Consensus 150 qksr~~am~PmTkEEyear-QSvIRrVvDpETGRtRLIkGdGEilE 194 (225)
T PF10500_consen 150 QKSRIQAMAPMTKEEYEAR-QSVIRRVVDPETGRTRLIKGDGEILE 194 (225)
T ss_pred hhhhhhhcCCCCHHHHHHH-HhhheeeecCCCCceeeecccchHHH
Confidence 4444443 36666666542 34777999999999999999887753
No 30
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=52.16 E-value=5.5 Score=26.61 Aligned_cols=16 Identities=13% Similarity=0.328 Sum_probs=13.3
Q ss_pred eEEEEEEEEcccCEEE
Q 031959 121 LALKGAHYDFVNGKFE 136 (150)
Q Consensus 121 l~V~G~~Ydi~tG~v~ 136 (150)
...|||.||++||+..
T Consensus 67 Cp~Hg~~Fdl~tG~~~ 82 (105)
T TIGR02378 67 CPLHKRNFRLEDGRCL 82 (105)
T ss_pred CCcCCCEEEcCCcccc
Confidence 4589999999999844
No 31
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=51.98 E-value=5.2 Score=27.58 Aligned_cols=18 Identities=11% Similarity=-0.016 Sum_probs=14.7
Q ss_pred ceEEEEEEEEcccCEEEE
Q 031959 120 TLALKGAHYDFVNGKFEL 137 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~ 137 (150)
....|||-||+.||+...
T Consensus 69 ~CP~Hg~~FDLrTG~~~~ 86 (107)
T cd03473 69 RCTKHNWKLDVSTMKYVN 86 (107)
T ss_pred EeCCCCCEEEcCCCCCcc
Confidence 345899999999999653
No 32
>PRK14432 acylphosphatase; Provisional
Probab=51.31 E-value=22 Score=23.60 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=18.0
Q ss_pred ceEEEEEEEEcccCEEEEeec
Q 031959 120 TLALKGAHYDFVNGKFELWDL 140 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~ 140 (150)
++.|.||+.++.+|.|+.+-.
T Consensus 27 ~lgl~G~V~N~~dG~Vei~~~ 47 (93)
T PRK14432 27 NMKLKGFVKNLNDGRVEIVAF 47 (93)
T ss_pred HhCCEEEEEECCCCCEEEEEE
Confidence 567999999999999988654
No 33
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=50.40 E-value=5.7 Score=27.05 Aligned_cols=16 Identities=19% Similarity=0.302 Sum_probs=13.4
Q ss_pred eEEEEEEEEcccCEEE
Q 031959 121 LALKGAHYDFVNGKFE 136 (150)
Q Consensus 121 l~V~G~~Ydi~tG~v~ 136 (150)
...|||.||+.||+..
T Consensus 70 CP~H~~~Fdl~TG~~~ 85 (108)
T PRK09511 70 SPLKKQRFRLSDGLCM 85 (108)
T ss_pred CCCCCCEEECCCcccC
Confidence 4589999999999853
No 34
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=49.89 E-value=9.1 Score=30.30 Aligned_cols=13 Identities=38% Similarity=0.828 Sum_probs=11.4
Q ss_pred ceEEEeecCCchh
Q 031959 34 ENIVVIGHSCCGG 46 (150)
Q Consensus 34 ~~IvV~GHt~CGa 46 (150)
+-+.++|||+||=
T Consensus 30 EfvsilGpSGcGK 42 (248)
T COG1116 30 EFVAILGPSGCGK 42 (248)
T ss_pred CEEEEECCCCCCH
Confidence 5789999999994
No 35
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=49.79 E-value=11 Score=27.64 Aligned_cols=13 Identities=38% Similarity=0.669 Sum_probs=12.2
Q ss_pred cceEEEeecCCch
Q 031959 33 VENIVVIGHSCCG 45 (150)
Q Consensus 33 v~~IvV~GHt~CG 45 (150)
++.|+++||++||
T Consensus 2 ~r~i~ivG~~~~G 14 (194)
T cd01891 2 IRNIAIIAHVDHG 14 (194)
T ss_pred ccEEEEEecCCCC
Confidence 6799999999999
No 36
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=49.59 E-value=6.7 Score=26.70 Aligned_cols=16 Identities=31% Similarity=0.573 Sum_probs=13.5
Q ss_pred eEEEEEEEEcccCEEE
Q 031959 121 LALKGAHYDFVNGKFE 136 (150)
Q Consensus 121 l~V~G~~Ydi~tG~v~ 136 (150)
...|+|.||+.||+..
T Consensus 66 Cp~H~a~Fdl~tG~~~ 81 (106)
T COG2146 66 CPLHGARFDLRTGECL 81 (106)
T ss_pred CCccCCEEEcCCCcee
Confidence 4589999999999943
No 37
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=49.23 E-value=6.4 Score=26.45 Aligned_cols=16 Identities=25% Similarity=0.276 Sum_probs=13.4
Q ss_pred eEEEEEEEEcccCEEE
Q 031959 121 LALKGAHYDFVNGKFE 136 (150)
Q Consensus 121 l~V~G~~Ydi~tG~v~ 136 (150)
...|||.||+.||+..
T Consensus 62 Cp~Hg~~Fd~~tG~~~ 77 (106)
T PRK09965 62 CPLHAASFCLRTGKAL 77 (106)
T ss_pred cCCCCCEEEcCCCCee
Confidence 3479999999999953
No 38
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=48.47 E-value=5.4 Score=26.18 Aligned_cols=15 Identities=20% Similarity=0.186 Sum_probs=13.0
Q ss_pred eEEEEEEEEcccCEE
Q 031959 121 LALKGAHYDFVNGKF 135 (150)
Q Consensus 121 l~V~G~~Ydi~tG~v 135 (150)
...|||.||++||.+
T Consensus 61 Cp~Hg~~Fdl~~G~~ 75 (98)
T cd03530 61 CPLHNWVIDLETGEA 75 (98)
T ss_pred CCCCCCEEECCCCCC
Confidence 458999999999985
No 39
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=48.25 E-value=7.3 Score=26.07 Aligned_cols=15 Identities=13% Similarity=-0.037 Sum_probs=12.9
Q ss_pred eEEEEEEEEcccCEE
Q 031959 121 LALKGAHYDFVNGKF 135 (150)
Q Consensus 121 l~V~G~~Ydi~tG~v 135 (150)
...|||.||++||..
T Consensus 61 CP~Hg~~Fdl~~G~~ 75 (108)
T cd03474 61 CRAHLWQFDADTGEG 75 (108)
T ss_pred eCCcCCEEECCCccc
Confidence 458999999999974
No 40
>PRK14430 acylphosphatase; Provisional
Probab=47.22 E-value=16 Score=24.28 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=17.7
Q ss_pred ceEEEEEEEEcccCEEEEeec
Q 031959 120 TLALKGAHYDFVNGKFELWDL 140 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~ 140 (150)
++.|.||+.++.+|.|+.+-+
T Consensus 29 ~lgl~G~VrN~~dGsVei~~q 49 (92)
T PRK14430 29 DLGLGGWVRNRADGTVEVMAS 49 (92)
T ss_pred HhCCEEEEEECCCCcEEEEEE
Confidence 567999999999999987643
No 41
>PRK14445 acylphosphatase; Provisional
Probab=47.11 E-value=36 Score=22.39 Aligned_cols=20 Identities=25% Similarity=0.337 Sum_probs=17.4
Q ss_pred ceEEEEEEEEcccCEEEEee
Q 031959 120 TLALKGAHYDFVNGKFELWD 139 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~ 139 (150)
++.|.||+.+..+|.|+.+-
T Consensus 29 ~~gl~G~V~N~~dG~Vei~~ 48 (91)
T PRK14445 29 ELNLSGWVRNLPDGTVEIEA 48 (91)
T ss_pred hCCCEEEEEECCCCeEEEEE
Confidence 67799999999999988754
No 42
>PRK14440 acylphosphatase; Provisional
Probab=44.53 E-value=19 Score=23.76 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=17.7
Q ss_pred ceEEEEEEEEcccCEEEEeec
Q 031959 120 TLALKGAHYDFVNGKFELWDL 140 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~ 140 (150)
++.|.||+.++..|.|+.+-.
T Consensus 28 ~~gl~G~V~N~~dG~Vei~~~ 48 (90)
T PRK14440 28 RLGIKGYAKNLPDGSVEVVAE 48 (90)
T ss_pred HcCCEEEEEECCCCCEEEEEE
Confidence 567999999999999887543
No 43
>PRK14423 acylphosphatase; Provisional
Probab=44.08 E-value=23 Score=23.36 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=18.0
Q ss_pred ceEEEEEEEEcccCEEEEeec
Q 031959 120 TLALKGAHYDFVNGKFELWDL 140 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~ 140 (150)
++.+.||+.++.+|.|+.+-.
T Consensus 30 ~lgl~G~V~N~~dG~Vei~~~ 50 (92)
T PRK14423 30 ELGVDGWVRNLDDGRVEAVFE 50 (92)
T ss_pred HcCCEEEEEECCCCeEEEEEE
Confidence 577999999999999887643
No 44
>PRK14429 acylphosphatase; Provisional
Probab=43.41 E-value=40 Score=22.07 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=17.2
Q ss_pred ceEEEEEEEEcccCEEEEee
Q 031959 120 TLALKGAHYDFVNGKFELWD 139 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~ 139 (150)
++.+.||+.+..+|.|+.+-
T Consensus 27 ~~gl~G~V~N~~dG~Vei~~ 46 (90)
T PRK14429 27 ALGVTGYVTNCEDGSVEILA 46 (90)
T ss_pred HhCCEEEEEECCCCeEEEEE
Confidence 56799999999999988754
No 45
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=43.28 E-value=51 Score=25.93 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=26.3
Q ss_pred CHHHHHHHHcCceEEEEEEEEcccCEEEEee
Q 031959 109 YPFVRESVVKNTLALKGAHYDFVNGKFELWD 139 (150)
Q Consensus 109 ~p~i~~~v~~g~l~V~G~~Ydi~tG~v~~~~ 139 (150)
..++-+...+|.+.-||.+++++||.+..+.
T Consensus 212 ~~~L~~lf~~g~~~~~g~~~nl~~~~~~p~~ 242 (244)
T TIGR03736 212 MNLLWKLFRKGRLEFHGVFVNLATGRTNPLP 242 (244)
T ss_pred HHHHHHHHhcCceeeeEEEEECCCCcccccc
Confidence 4566778889999999999999999987653
No 46
>PRK14434 acylphosphatase; Provisional
Probab=43.03 E-value=44 Score=22.11 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=18.4
Q ss_pred ceE-EEEEEEEcccCEEEEeecc
Q 031959 120 TLA-LKGAHYDFVNGKFELWDLD 141 (150)
Q Consensus 120 ~l~-V~G~~Ydi~tG~v~~~~~~ 141 (150)
++. |.||+.+..+|.|+.+-.-
T Consensus 27 ~lg~l~G~V~N~~dGsVei~~qG 49 (92)
T PRK14434 27 EIGDIYGRVWNNDDGTVEILAQS 49 (92)
T ss_pred HcCCcEEEEEECCCCCEEEEEEc
Confidence 677 9999999999988876543
No 47
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=42.45 E-value=8.8 Score=25.07 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=13.5
Q ss_pred eEEEEEEEEcccCEEE
Q 031959 121 LALKGAHYDFVNGKFE 136 (150)
Q Consensus 121 l~V~G~~Ydi~tG~v~ 136 (150)
...|||.||++||+..
T Consensus 61 Cp~H~~~f~~~~G~~~ 76 (98)
T cd03467 61 CPCHGSRFDLRTGEVV 76 (98)
T ss_pred eCCCCCEEeCCCccCc
Confidence 4589999999999954
No 48
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=42.40 E-value=16 Score=25.47 Aligned_cols=12 Identities=33% Similarity=0.556 Sum_probs=10.9
Q ss_pred ceEEEeecCCch
Q 031959 34 ENIVVIGHSCCG 45 (150)
Q Consensus 34 ~~IvV~GHt~CG 45 (150)
+.|+|+|+++||
T Consensus 1 ~~i~iiG~~~~G 12 (168)
T cd01887 1 PVVTVMGHVDHG 12 (168)
T ss_pred CEEEEEecCCCC
Confidence 469999999999
No 49
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=41.62 E-value=26 Score=26.44 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.5
Q ss_pred cchHHHHHHHHhhcCcceEEEeecC
Q 031959 18 SGAGAAIEYAVLHLKVENIVVIGHS 42 (150)
Q Consensus 18 ~~~~asleyav~~L~v~~IvV~GHt 42 (150)
.+..+-||||.+.|++..+++|=|-
T Consensus 119 e~lvalLEfAEekl~~d~Vfi~F~K 143 (191)
T KOG4387|consen 119 EGLVALLEFAEEKLHVDKVFICFDK 143 (191)
T ss_pred HhHHHHHHHHHHhhccceEEEEEec
Confidence 3578999999999999999998653
No 50
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=40.90 E-value=18 Score=26.55 Aligned_cols=15 Identities=13% Similarity=0.428 Sum_probs=13.1
Q ss_pred cCcceEEEeecCCch
Q 031959 31 LKVENIVVIGHSCCG 45 (150)
Q Consensus 31 L~v~~IvV~GHt~CG 45 (150)
=+...|+|+|+++||
T Consensus 39 ~~~~~I~iiG~~g~G 53 (204)
T cd01878 39 SGIPTVALVGYTNAG 53 (204)
T ss_pred cCCCeEEEECCCCCC
Confidence 346799999999999
No 51
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=39.99 E-value=16 Score=25.29 Aligned_cols=21 Identities=14% Similarity=0.109 Sum_probs=16.2
Q ss_pred eEEEEEEEEcccCEEEEeeccC
Q 031959 121 LALKGAHYDFVNGKFELWDLDF 142 (150)
Q Consensus 121 l~V~G~~Ydi~tG~v~~~~~~~ 142 (150)
...|||.|| .||++.-.....
T Consensus 65 Cp~Hgw~Fd-~tG~~~~~p~~~ 85 (123)
T cd03535 65 CPYHGWTYR-NTGRLVGVPAQQ 85 (123)
T ss_pred CCcCCCEEC-CCcCEeeCCCcc
Confidence 458999999 899987665433
No 52
>PRK14449 acylphosphatase; Provisional
Probab=39.84 E-value=51 Score=21.59 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=17.8
Q ss_pred ceEEEEEEEEcccCEEEEeec
Q 031959 120 TLALKGAHYDFVNGKFELWDL 140 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~ 140 (150)
++.|.||+.++.+|.|+.+-.
T Consensus 28 ~lgl~G~V~N~~dG~Vei~~~ 48 (90)
T PRK14449 28 SLGITGYAENLYDGSVEVVAE 48 (90)
T ss_pred HcCCEEEEEECCCCeEEEEEE
Confidence 567999999999999887643
No 53
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=39.83 E-value=21 Score=24.46 Aligned_cols=33 Identities=15% Similarity=0.012 Sum_probs=19.8
Q ss_pred ccchHHHHHHHHhhcCcceEEEeecCCchhhhh
Q 031959 17 YSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKG 49 (150)
Q Consensus 17 ~~~~~asleyav~~L~v~~IvV~GHt~CGav~a 49 (150)
..+.++-||||=+.|++.+|+||=+-+.-....
T Consensus 40 K~~lvaLLElAee~L~c~~vvic~~k~~~d~~~ 72 (108)
T PF02100_consen 40 KESLVALLELAEEKLGCSHVVICLDKNRPDRAS 72 (108)
T ss_dssp SHHHHHHHHHHHHHH----EEEEE---SS-HHH
T ss_pred HHHHHHHHHHhcCcCCCCEEEEEEECCchhHHH
Confidence 346789999999999999999997766555443
No 54
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=39.75 E-value=33 Score=25.44 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=24.0
Q ss_pred HHHHHHHHhhcCcceEEEeecCCchhhhhhh
Q 031959 21 GAAIEYAVLHLKVENIVVIGHSCCGGIKGLM 51 (150)
Q Consensus 21 ~asleyav~~L~v~~IvV~GHt~CGav~aa~ 51 (150)
...+..-+..++.+.++++|||--|.+...+
T Consensus 83 ~~~~~~~~~~~~~~~~~liG~S~Gg~ia~~~ 113 (288)
T TIGR01250 83 VDELEEVREKLGLDKFYLLGHSWGGMLAQEY 113 (288)
T ss_pred HHHHHHHHHHcCCCcEEEEEeehHHHHHHHH
Confidence 3445555778899999999999999887644
No 55
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=39.67 E-value=22 Score=26.01 Aligned_cols=32 Identities=28% Similarity=0.392 Sum_probs=26.3
Q ss_pred hHHHHHHHHhh-----cCcceEEEeecCCchhhhhhh
Q 031959 20 AGAAIEYAVLH-----LKVENIVVIGHSCCGGIKGLM 51 (150)
Q Consensus 20 ~~asleyav~~-----L~v~~IvV~GHt~CGav~aa~ 51 (150)
+.++++|-.++ ...+.|+|+|||..|-+.+.+
T Consensus 52 ~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~ 88 (211)
T PF07859_consen 52 VKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSL 88 (211)
T ss_dssp HHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHH
T ss_pred cccceeeeccccccccccccceEEeecccccchhhhh
Confidence 56788888888 777899999999888777543
No 56
>PRK14436 acylphosphatase; Provisional
Probab=39.62 E-value=50 Score=21.74 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=17.8
Q ss_pred ceEEEEEEEEcccCEEEEeec
Q 031959 120 TLALKGAHYDFVNGKFELWDL 140 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~ 140 (150)
++.+.||+.++.+|.|+.+-+
T Consensus 29 ~l~l~G~V~N~~dG~Vei~~q 49 (91)
T PRK14436 29 KLGVNGWVRNLPDGSVEAVLE 49 (91)
T ss_pred HcCCEEEEEECCCCcEEEEEE
Confidence 567999999999999987643
No 57
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=39.53 E-value=17 Score=25.76 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=10.8
Q ss_pred ceEEEeecCCch
Q 031959 34 ENIVVIGHSCCG 45 (150)
Q Consensus 34 ~~IvV~GHt~CG 45 (150)
+.|+++||++||
T Consensus 1 rni~~vG~~~~G 12 (179)
T cd01890 1 RNFSIIAHIDHG 12 (179)
T ss_pred CcEEEEeecCCC
Confidence 468999999999
No 58
>COG4707 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.52 E-value=31 Score=23.40 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=21.0
Q ss_pred HHHHHHhhcCHHHHHHHHcCceEEE--EEEEEcc
Q 031959 100 NVSLGNLLTYPFVRESVVKNTLALK--GAHYDFV 131 (150)
Q Consensus 100 ~~~v~~L~~~p~i~~~v~~g~l~V~--G~~Ydi~ 131 (150)
..++++|+-+|.+++ .|.|- ||+|=++
T Consensus 48 d~tiknlL~hPrl~k-----~L~iengG~VyYP~ 76 (107)
T COG4707 48 DWTIKNLLLHPRLKK-----MLSIENGGWVYYPE 76 (107)
T ss_pred hhHHHHHhcCchhhh-----heeeecCcEEEccc
Confidence 347788999999998 56677 9988665
No 59
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=39.25 E-value=23 Score=22.83 Aligned_cols=16 Identities=19% Similarity=0.065 Sum_probs=13.4
Q ss_pred EEEcccCEEEEeeccC
Q 031959 127 HYDFVNGKFELWDLDF 142 (150)
Q Consensus 127 ~Ydi~tG~v~~~~~~~ 142 (150)
+=|++||.+++++.+.
T Consensus 51 VadVDtG~I~wVnaD~ 66 (75)
T PF11302_consen 51 VADVDTGVIRWVNADE 66 (75)
T ss_pred EEEccCCeEEEEEchh
Confidence 4589999999998765
No 60
>PRK14451 acylphosphatase; Provisional
Probab=38.88 E-value=25 Score=23.10 Aligned_cols=21 Identities=19% Similarity=0.472 Sum_probs=17.9
Q ss_pred ceEEEEEEEEcccCEEEEeec
Q 031959 120 TLALKGAHYDFVNGKFELWDL 140 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~ 140 (150)
++.|.||+.+..+|.|+.+-+
T Consensus 28 ~~gl~G~V~N~~dG~Vei~~q 48 (89)
T PRK14451 28 QLMISGWARNLADGRVEVFAC 48 (89)
T ss_pred HhCCEEEEEECCCCCEEEEEE
Confidence 567999999999999987643
No 61
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=38.88 E-value=17 Score=24.86 Aligned_cols=18 Identities=6% Similarity=0.108 Sum_probs=14.3
Q ss_pred eEEEEEEEEcccCEEEEee
Q 031959 121 LALKGAHYDFVNGKFELWD 139 (150)
Q Consensus 121 l~V~G~~Ydi~tG~v~~~~ 139 (150)
...|||-||+ ||+..-+.
T Consensus 62 CP~Hg~~fd~-~G~~~~~p 79 (115)
T cd03531 62 CPFHDWRWGG-DGRCKAIP 79 (115)
T ss_pred CCCCCCEECC-CCCEEECC
Confidence 4589999999 99866553
No 62
>PRK14448 acylphosphatase; Provisional
Probab=38.73 E-value=25 Score=23.15 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=17.6
Q ss_pred ceEEEEEEEEcccCEEEEeec
Q 031959 120 TLALKGAHYDFVNGKFELWDL 140 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~ 140 (150)
++.|.||+.++.+|.|+.+-.
T Consensus 27 ~lgl~G~V~N~~dG~Vei~~~ 47 (90)
T PRK14448 27 KIGIKGYVKNRPDGSVEVVAV 47 (90)
T ss_pred HhCCEEEEEECCCCCEEEEEE
Confidence 567999999999999887543
No 63
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=38.67 E-value=18 Score=25.27 Aligned_cols=10 Identities=20% Similarity=0.710 Sum_probs=9.6
Q ss_pred EEEeecCCch
Q 031959 36 IVVIGHSCCG 45 (150)
Q Consensus 36 IvV~GHt~CG 45 (150)
|+|+|+.+||
T Consensus 2 i~~vG~~~~G 11 (167)
T cd04160 2 VLILGLDNAG 11 (167)
T ss_pred EEEEecCCCC
Confidence 7999999999
No 64
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=38.67 E-value=50 Score=21.38 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=15.6
Q ss_pred ceEEEEEEEEcccCEEEEeec
Q 031959 120 TLALKGAHYDFVNGKFELWDL 140 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~ 140 (150)
++.|.||+.+..+|.|+.+-.
T Consensus 29 ~~gl~G~V~N~~dg~V~i~~~ 49 (91)
T PF00708_consen 29 KLGLTGWVRNLPDGSVEIEAE 49 (91)
T ss_dssp HTT-EEEEEE-TTSEEEEEEE
T ss_pred HhCCceEEEECCCCEEEEEEE
Confidence 456999999999999887643
No 65
>PF02983 Pro_Al_protease: Alpha-lytic protease prodomain; InterPro: IPR004236 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. The alpha-lytic protease prodomain is associated with serine peptidases, specifically the alpha-lytic endopeptidases and streptogrisin A, B, C, D and E, which are bacterial enzymes and which belong to MEROPS peptidase subfamily S1A (IPR001316 from INTERPRO). The protease precursor in Gram-negative bacterial proteases may be a general property of extracellular bacterial proteases []. The proteases are encoded with a large (166 amino acid) N-terminal pro region that is required transiently both in vivo and in vitro for the correct folding of the protease domain [, ]. The pro region also acts as a potent inhibitor of the mature enzyme []. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis, 0005576 extracellular region; PDB: 3PRO_C 2PRO_B 4PRO_C.
Probab=38.30 E-value=72 Score=19.41 Aligned_cols=24 Identities=13% Similarity=-0.096 Sum_probs=19.4
Q ss_pred CceEEEEEEEEcccCEEEEeeccC
Q 031959 119 NTLALKGAHYDFVNGKFELWDLDF 142 (150)
Q Consensus 119 g~l~V~G~~Ydi~tG~v~~~~~~~ 142 (150)
....+.+|+-|+.|++|-+...++
T Consensus 21 ~~~~~~~WyvD~~tn~VVV~a~~~ 44 (62)
T PF02983_consen 21 APVAVTSWYVDPRTNKVVVTADST 44 (62)
T ss_dssp GGGCEEEEEEECCCTEEEEEEECT
T ss_pred CCCCcceEEEeCCCCeEEEEECCC
Confidence 356799999999999988765554
No 66
>PRK14441 acylphosphatase; Provisional
Probab=38.22 E-value=37 Score=22.47 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=18.1
Q ss_pred ceEEEEEEEEcccCEEEEeec
Q 031959 120 TLALKGAHYDFVNGKFELWDL 140 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~ 140 (150)
++.|.||+.+..+|.|+.+-+
T Consensus 30 ~lgL~G~V~N~~dG~Vei~~q 50 (93)
T PRK14441 30 RLGVEGWVRNLPDGRVEAEAE 50 (93)
T ss_pred hcCcEEEEEECCCCEEEEEEE
Confidence 678999999999999887644
No 67
>PRK14422 acylphosphatase; Provisional
Probab=37.45 E-value=51 Score=21.81 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=17.7
Q ss_pred ceEEEEEEEEcccCEEEEeec
Q 031959 120 TLALKGAHYDFVNGKFELWDL 140 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~ 140 (150)
++.|.||+.+...|.|+.+-.
T Consensus 31 ~~gl~G~V~N~~dG~Vei~~~ 51 (93)
T PRK14422 31 ELGLTGYAANLADGRVQVVAE 51 (93)
T ss_pred HcCCEEEEEECCCCCEEEEEE
Confidence 577999999999998887543
No 68
>PF07453 NUMOD1: NUMOD1 domain; InterPro: IPR010896 This helix-turn-helix-containing DNA-binding domain is found associated in homing nucleases [].
Probab=37.31 E-value=41 Score=17.92 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=11.1
Q ss_pred EEEEcccCEEEEee
Q 031959 126 AHYDFVNGKFELWD 139 (150)
Q Consensus 126 ~~Ydi~tG~v~~~~ 139 (150)
++||++++.+..++
T Consensus 4 ~~yd~~~~~i~~F~ 17 (37)
T PF07453_consen 4 YVYDLNTNEIKSFD 17 (37)
T ss_pred EEEECCCCeEEEEc
Confidence 68999999976653
No 69
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=37.20 E-value=30 Score=18.58 Aligned_cols=17 Identities=18% Similarity=-0.197 Sum_probs=12.5
Q ss_pred EEEEcccCEEEEeeccC
Q 031959 126 AHYDFVNGKFELWDLDF 142 (150)
Q Consensus 126 ~~Ydi~tG~v~~~~~~~ 142 (150)
.-+|.+||++.|--..+
T Consensus 13 ~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 13 YALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEETTTTSEEEEEESS
T ss_pred EEEECCCCCEEEeeeCC
Confidence 35799999998865444
No 70
>PRK03592 haloalkane dehalogenase; Provisional
Probab=36.96 E-value=35 Score=26.40 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=25.4
Q ss_pred HHHHHHHHhhcCcceEEEeecCCchhhhhhhc
Q 031959 21 GAAIEYAVLHLKVENIVVIGHSCCGGIKGLMS 52 (150)
Q Consensus 21 ~asleyav~~L~v~~IvV~GHt~CGav~aa~~ 52 (150)
..-+.--++.|+.+.++++|||-.|.+...+.
T Consensus 80 a~dl~~ll~~l~~~~~~lvGhS~Gg~ia~~~a 111 (295)
T PRK03592 80 ARYLDAWFDALGLDDVVLVGHDWGSALGFDWA 111 (295)
T ss_pred HHHHHHHHHHhCCCCeEEEEECHHHHHHHHHH
Confidence 34566667889999999999999999876443
No 71
>PRK14426 acylphosphatase; Provisional
Probab=36.62 E-value=31 Score=22.76 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=17.3
Q ss_pred ceEEEEEEEEcccCEEEEee
Q 031959 120 TLALKGAHYDFVNGKFELWD 139 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~ 139 (150)
++.|.||+.+..+|.|+.+-
T Consensus 29 ~~gl~G~V~N~~dG~Vei~~ 48 (92)
T PRK14426 29 KLGLTGYAKNLDDGSVEVVA 48 (92)
T ss_pred HhCCEEEEEECCCCcEEEEE
Confidence 56799999999999988754
No 72
>PRK14420 acylphosphatase; Provisional
Probab=36.27 E-value=32 Score=22.50 Aligned_cols=21 Identities=19% Similarity=0.075 Sum_probs=17.6
Q ss_pred ceEEEEEEEEcccCEEEEeec
Q 031959 120 TLALKGAHYDFVNGKFELWDL 140 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~ 140 (150)
++.|.||+.+..+|.|+.+-.
T Consensus 27 ~~gl~G~V~N~~dG~Vei~~q 47 (91)
T PRK14420 27 KRKLTGWVKNRDDGTVEIEAE 47 (91)
T ss_pred HcCCEEEEEECCCCcEEEEEE
Confidence 567999999999999887543
No 73
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=36.17 E-value=21 Score=26.75 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=11.0
Q ss_pred ceEEEeecCCchh
Q 031959 34 ENIVVIGHSCCGG 46 (150)
Q Consensus 34 ~~IvV~GHt~CGa 46 (150)
+.|+|+||.++|=
T Consensus 1 rnv~iiG~~~~GK 13 (213)
T cd04167 1 RNVAIAGHLHHGK 13 (213)
T ss_pred CcEEEEcCCCCCH
Confidence 4689999999993
No 74
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=34.97 E-value=40 Score=23.76 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=25.2
Q ss_pred hHHHHHHHHhhcCcceEEEeecCCchhhhhh
Q 031959 20 AGAAIEYAVLHLKVENIVVIGHSCCGGIKGL 50 (150)
Q Consensus 20 ~~asleyav~~L~v~~IvV~GHt~CGav~aa 50 (150)
....+.-.++.++.+.++++|||-=|.+...
T Consensus 52 ~~~~l~~~l~~~~~~~~~lvG~S~Gg~~a~~ 82 (228)
T PF12697_consen 52 YAEDLAELLDALGIKKVILVGHSMGGMIALR 82 (228)
T ss_dssp HHHHHHHHHHHTTTSSEEEEEETHHHHHHHH
T ss_pred hhhhhhhcccccccccccccccccccccccc
Confidence 3466778889999999999999987776653
No 75
>PRK14425 acylphosphatase; Provisional
Probab=34.97 E-value=36 Score=22.60 Aligned_cols=21 Identities=19% Similarity=0.112 Sum_probs=17.7
Q ss_pred ceEEEEEEEEcccCEEEEeec
Q 031959 120 TLALKGAHYDFVNGKFELWDL 140 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~ 140 (150)
++.|.||+.++..|.|+.+-.
T Consensus 31 ~~gl~G~V~N~~dGsVei~~q 51 (94)
T PRK14425 31 RLGLTGWVRNESDGSVTALIA 51 (94)
T ss_pred HhCCEEEEEECCCCeEEEEEE
Confidence 566999999999999997643
No 76
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=34.66 E-value=25 Score=27.70 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=12.3
Q ss_pred cceEEEeecCCchh
Q 031959 33 VENIVVIGHSCCGG 46 (150)
Q Consensus 33 v~~IvV~GHt~CGa 46 (150)
.+.|.|+||.+||=
T Consensus 2 ~Rni~ivGh~~~GK 15 (267)
T cd04169 2 RRTFAIISHPDAGK 15 (267)
T ss_pred ccEEEEEcCCCCCH
Confidence 47899999999993
No 77
>PRK14444 acylphosphatase; Provisional
Probab=34.29 E-value=35 Score=22.53 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=17.6
Q ss_pred ceEEEEEEEEcccCEEEEeec
Q 031959 120 TLALKGAHYDFVNGKFELWDL 140 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~ 140 (150)
++.+.||+.++.+|.|+.+-+
T Consensus 29 ~lgl~G~V~N~~dG~Vei~~q 49 (92)
T PRK14444 29 EAGVKGWVRNLSDGRVEAVFE 49 (92)
T ss_pred HhCCEEEEEECCCCcEEEEEE
Confidence 567999999999999886543
No 78
>PRK14438 acylphosphatase; Provisional
Probab=34.24 E-value=71 Score=20.96 Aligned_cols=21 Identities=19% Similarity=0.102 Sum_probs=17.6
Q ss_pred ceEEEEEEEEcccCEEEEeec
Q 031959 120 TLALKGAHYDFVNGKFELWDL 140 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~ 140 (150)
++.|.||+-++.+|.|+.+-+
T Consensus 28 ~~gl~G~V~N~~dG~Vei~~q 48 (91)
T PRK14438 28 RLNVSGWVKNLPNGSVQGCFE 48 (91)
T ss_pred HcCCEEEEEECCCCEEEEEEE
Confidence 567999999999999886543
No 79
>PRK14427 acylphosphatase; Provisional
Probab=34.17 E-value=73 Score=21.07 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=17.8
Q ss_pred ceEEEEEEEEcccCEEEEeec
Q 031959 120 TLALKGAHYDFVNGKFELWDL 140 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~ 140 (150)
++.|.||+-++..|.|+.+-+
T Consensus 31 ~lgl~G~V~N~~dGsVei~~q 51 (94)
T PRK14427 31 ELGLTGTVRNLDDGSVALVAE 51 (94)
T ss_pred HcCCEEEEEECCCCeEEEEEE
Confidence 577999999999999887543
No 80
>PF09905 DUF2132: Uncharacterized conserved protein (DUF2132); InterPro: IPR018668 This entry contains proteins that have no known function. ; PDB: 2JVW_A.
Probab=34.09 E-value=47 Score=20.69 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhcCHHHHHHHH
Q 031959 97 EAVNVSLGNLLTYPFVRESVV 117 (150)
Q Consensus 97 ~nV~~~v~~L~~~p~i~~~v~ 117 (150)
-+++.+++.||.+|+-|+.++
T Consensus 40 PsikSSLkFLRkTpWAR~KVE 60 (64)
T PF09905_consen 40 PSIKSSLKFLRKTPWAREKVE 60 (64)
T ss_dssp --HHHHHHHHHHSHHHHHHHH
T ss_pred CchHHHHHHHhcCHhHHHHHH
Confidence 368889999999999999775
No 81
>PRK14437 acylphosphatase; Provisional
Probab=33.90 E-value=57 Score=22.35 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=17.7
Q ss_pred ceEEEEEEEEcccCEEEEeec
Q 031959 120 TLALKGAHYDFVNGKFELWDL 140 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~ 140 (150)
++.|.||+.++..|.|+.+-.
T Consensus 48 ~lgL~G~V~N~~dG~Vei~~q 68 (109)
T PRK14437 48 ELQLTGWVKNLSHGDVELVAC 68 (109)
T ss_pred HhCCeEEEEECCCCCEEEEEE
Confidence 567999999999999887643
No 82
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=33.80 E-value=16 Score=24.72 Aligned_cols=13 Identities=23% Similarity=0.457 Sum_probs=11.5
Q ss_pred EEEEEEEcccCEE
Q 031959 123 LKGAHYDFVNGKF 135 (150)
Q Consensus 123 V~G~~Ydi~tG~v 135 (150)
.|++.||++||+.
T Consensus 69 lH~~~f~L~tG~~ 81 (104)
T PF13806_consen 69 LHKWRFDLRTGEC 81 (104)
T ss_dssp TTTEEEETTTTEE
T ss_pred CCCCeEECCCcCc
Confidence 6799999999984
No 83
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=33.62 E-value=26 Score=24.44 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=10.8
Q ss_pred ceEEEeecCCch
Q 031959 34 ENIVVIGHSCCG 45 (150)
Q Consensus 34 ~~IvV~GHt~CG 45 (150)
+.|+++|++++|
T Consensus 1 ~~i~~~G~~~~G 12 (168)
T cd01897 1 PTLVIAGYPNVG 12 (168)
T ss_pred CeEEEEcCCCCC
Confidence 568999999999
No 84
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=33.56 E-value=39 Score=16.94 Aligned_cols=12 Identities=17% Similarity=0.064 Sum_probs=8.1
Q ss_pred EEEcccCEEEEe
Q 031959 127 HYDFVNGKFELW 138 (150)
Q Consensus 127 ~Ydi~tG~v~~~ 138 (150)
.+|.+||++.|-
T Consensus 20 a~d~~~G~~~W~ 31 (33)
T smart00564 20 ALDAKTGEILWT 31 (33)
T ss_pred EEEcccCcEEEE
Confidence 467777777663
No 85
>PRK14446 acylphosphatase; Provisional
Probab=33.53 E-value=48 Score=21.79 Aligned_cols=21 Identities=24% Similarity=0.329 Sum_probs=18.3
Q ss_pred ceEEEEEEEEcccCEEEEeec
Q 031959 120 TLALKGAHYDFVNGKFELWDL 140 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~ 140 (150)
++.|.||+.+..+|.|+.+-+
T Consensus 27 ~lgl~G~V~N~~dGsVei~~q 47 (88)
T PRK14446 27 ALGLVGHARNQADGSVEVVAA 47 (88)
T ss_pred eCCeEEEEEECCCCCEEEEEE
Confidence 688999999999999987654
No 86
>PRK14421 acylphosphatase; Provisional
Probab=32.76 E-value=72 Score=21.48 Aligned_cols=21 Identities=24% Similarity=0.184 Sum_probs=17.6
Q ss_pred ceEEEEEEEEcccCEEEEeec
Q 031959 120 TLALKGAHYDFVNGKFELWDL 140 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~ 140 (150)
++.+.||+-++.+|.|+.+-.
T Consensus 29 ~lgL~G~V~N~~dG~Vei~~~ 49 (99)
T PRK14421 29 ALGLEGWVRNRRDGSVEALFA 49 (99)
T ss_pred HhCCEEEEEECCCCEEEEEEe
Confidence 567999999999999987643
No 87
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=31.96 E-value=52 Score=21.18 Aligned_cols=13 Identities=15% Similarity=0.238 Sum_probs=9.5
Q ss_pred EEEEcccCEEEEe
Q 031959 126 AHYDFVNGKFELW 138 (150)
Q Consensus 126 ~~Ydi~tG~v~~~ 138 (150)
.+||.+||+--.+
T Consensus 32 ~lfDPETGqYVeV 44 (75)
T PF15232_consen 32 TLFDPETGQYVEV 44 (75)
T ss_pred eeecCCCCcEEEE
Confidence 5899999994333
No 88
>PRK14428 acylphosphatase; Provisional
Probab=31.87 E-value=81 Score=21.13 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=18.0
Q ss_pred ceEEEEEEEEcccCEEEEeec
Q 031959 120 TLALKGAHYDFVNGKFELWDL 140 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~ 140 (150)
++.|.||+.+..+|.|+..-.
T Consensus 33 ~lgL~G~V~N~~dGsVei~~q 53 (97)
T PRK14428 33 RLGVQGWVRNCRDGSVELEAQ 53 (97)
T ss_pred HcCCEEEEEECCCCEEEEEEE
Confidence 577999999999999987654
No 89
>PRK14443 acylphosphatase; Provisional
Probab=31.75 E-value=46 Score=22.13 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=18.1
Q ss_pred ceEEEEEEEEcccCEEEEeec
Q 031959 120 TLALKGAHYDFVNGKFELWDL 140 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~ 140 (150)
++.|.||+-++.+|.|+.+-+
T Consensus 29 ~~gl~G~V~N~~dG~Vei~~q 49 (93)
T PRK14443 29 KYDISGTVKNLDDGSVEIHAI 49 (93)
T ss_pred HcCCEEEEEECCCCEEEEEEE
Confidence 567999999999999997654
No 90
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=31.52 E-value=48 Score=25.63 Aligned_cols=30 Identities=17% Similarity=0.083 Sum_probs=23.2
Q ss_pred HHHHHHHHhhcCcceEEEeecCCchhhhhh
Q 031959 21 GAAIEYAVLHLKVENIVVIGHSCCGGIKGL 50 (150)
Q Consensus 21 ~asleyav~~L~v~~IvV~GHt~CGav~aa 50 (150)
..-+.-.+..++.+.++++|||-.|.+...
T Consensus 89 a~~l~~~l~~l~~~~~~lvGhS~Gg~va~~ 118 (294)
T PLN02824 89 GEQLNDFCSDVVGDPAFVICNSVGGVVGLQ 118 (294)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCHHHHHHHH
Confidence 344555566788999999999999988753
No 91
>PRK14435 acylphosphatase; Provisional
Probab=31.51 E-value=40 Score=22.12 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=17.8
Q ss_pred ceEEEEEEEEcccCEEEEeec
Q 031959 120 TLALKGAHYDFVNGKFELWDL 140 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~ 140 (150)
++.|.||+.+...|.|+.+-.
T Consensus 27 ~~gl~G~V~N~~dG~Vei~~~ 47 (90)
T PRK14435 27 SLGVKGYVMNMDDGSVFIHAE 47 (90)
T ss_pred HhCCEEEEEECCCCCEEEEEE
Confidence 567999999999999987654
No 92
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=31.24 E-value=31 Score=24.14 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=17.2
Q ss_pred eEEEEEEEEcccCEEEEeeccCCCC
Q 031959 121 LALKGAHYDFVNGKFELWDLDFNIL 145 (150)
Q Consensus 121 l~V~G~~Ydi~tG~v~~~~~~~~~~ 145 (150)
...|||.|| .||++.-+....+.+
T Consensus 71 CP~Hgw~fd-~~G~~~~~P~~~~~~ 94 (128)
T cd03472 71 CTYHGWAYD-TAGNLVNVPFEKEAF 94 (128)
T ss_pred CCcCCeEEC-CCcCEEeccCccccc
Confidence 458999999 589988665544333
No 93
>PRK14452 acylphosphatase; Provisional
Probab=30.79 E-value=71 Score=21.85 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=17.8
Q ss_pred ceEEEEEEEEcccCEEEEeec
Q 031959 120 TLALKGAHYDFVNGKFELWDL 140 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~ 140 (150)
++.+.||+.+...|.|+.+-.
T Consensus 45 ~lgL~G~V~N~~dGsVeI~~q 65 (107)
T PRK14452 45 DLGLSGWVRNLSDGSVEVQAE 65 (107)
T ss_pred HhCCEEEEEECCCCCEEEEEE
Confidence 567999999999999987643
No 94
>PRK14433 acylphosphatase; Provisional
Probab=30.66 E-value=43 Score=21.89 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=17.7
Q ss_pred ceEEEEEEEEcccCEEEEeec
Q 031959 120 TLALKGAHYDFVNGKFELWDL 140 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~ 140 (150)
++.+.||+.++.+|.|+.+-.
T Consensus 26 ~~~l~G~V~N~~dG~Vei~~~ 46 (87)
T PRK14433 26 ELGLSGYAENLSDGRVEVVAE 46 (87)
T ss_pred HcCCEEEEEECCCCCEEEEEE
Confidence 567999999999998887643
No 95
>PRK14424 acylphosphatase; Provisional
Probab=30.49 E-value=42 Score=22.34 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=17.6
Q ss_pred ceEEEEEEEEcccCEEEEeec
Q 031959 120 TLALKGAHYDFVNGKFELWDL 140 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~ 140 (150)
++.|.||+.++.+|.|+.+-.
T Consensus 32 ~~gl~G~V~N~~dG~Vei~~q 52 (94)
T PRK14424 32 ALGLRGWVANLEDGTVEAMIQ 52 (94)
T ss_pred HcCCeEEEEECCCCCEEEEEE
Confidence 567999999999998887644
No 96
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Probab=29.96 E-value=66 Score=23.73 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=18.2
Q ss_pred HHHHHHHHhhcCcceEEEeecCCchhh
Q 031959 21 GAAIEYAVLHLKVENIVVIGHSCCGGI 47 (150)
Q Consensus 21 ~asleyav~~L~v~~IvV~GHt~CGav 47 (150)
+..+.=.+......+|+|-||||-=+-
T Consensus 102 L~~~a~~L~~~p~~~i~V~GHTD~~Gs 128 (190)
T COG2885 102 LDELAKYLKKNPITRILVEGHTDSTGS 128 (190)
T ss_pred HHHHHHHHHhCCCcEEEEEecCCCCCC
Confidence 334444445555789999999997653
No 97
>PF01368 DHH: DHH family; InterPro: IPR001667 This is a domain of predicted phosphoesterases that includes Drosophila prune protein and bacterial RecJ exonuclease []. The RecJ protein of Escherichia coli plays an important role in a number of DNA repair and recombination pathways. RecJ catalyzes processive degradation of single-stranded DNA in a 5'-to-3' direction. Sequences highly related to those encoding RecJ can be found in many of the eubacterial genomes sequenced to date [].; GO: 0016787 hydrolase activity, 0030145 manganese ion binding; PDB: 3DEV_A 2HAW_A 1WPN_A 1WPM_B 2IW4_B 1K23_D 2EB0_A 1I74_A 2ZXR_A 2ZXO_A ....
Probab=29.93 E-value=41 Score=23.05 Aligned_cols=20 Identities=25% Similarity=0.591 Sum_probs=16.0
Q ss_pred CcceEEEeecC--Cchhhhhhh
Q 031959 32 KVENIVVIGHS--CCGGIKGLM 51 (150)
Q Consensus 32 ~v~~IvV~GHt--~CGav~aa~ 51 (150)
+-+.|+|+||. |+=++.+++
T Consensus 4 ~~~~i~i~~H~~~D~Dgl~Sa~ 25 (145)
T PF01368_consen 4 EAERILIVGHINPDADGLGSAI 25 (145)
T ss_dssp TTSEEEEEEBSS-SHHHHHHHH
T ss_pred CCCEEEEEccCCCCchHHHHHH
Confidence 45789999999 888877754
No 98
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=29.57 E-value=35 Score=22.39 Aligned_cols=11 Identities=55% Similarity=0.854 Sum_probs=10.0
Q ss_pred eEEEeecCCch
Q 031959 35 NIVVIGHSCCG 45 (150)
Q Consensus 35 ~IvV~GHt~CG 45 (150)
.|+|+|..+||
T Consensus 1 kI~V~G~~g~G 11 (119)
T PF08477_consen 1 KIVVLGDSGVG 11 (119)
T ss_dssp EEEEECSTTSS
T ss_pred CEEEECcCCCC
Confidence 48999999999
No 99
>PRK14447 acylphosphatase; Provisional
Probab=29.40 E-value=69 Score=21.22 Aligned_cols=20 Identities=15% Similarity=0.066 Sum_probs=17.0
Q ss_pred ceEEEEEEEEcccC-EEEEee
Q 031959 120 TLALKGAHYDFVNG-KFELWD 139 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG-~v~~~~ 139 (150)
++.|.||+.+..+| .|+.+-
T Consensus 29 ~~gl~G~V~N~~dG~~Vei~~ 49 (95)
T PRK14447 29 RNGVRGWVRNRSDGRTVEAVL 49 (95)
T ss_pred hcCeEEEEEECCCCCEEEEEE
Confidence 67799999999999 688754
No 100
>PF11815 DUF3336: Domain of unknown function (DUF3336); InterPro: IPR021771 This family of proteins is characterised by an N-terminal domain that is found adjacent to the patatin/phospholipase A2-related domain (see PF01734 from PFAM). The family of proteins, which contain these two domains, have been characterised in Saccharomyces cerevisiae (Baker's yeast) as a bifunctional enzyme with triacylglycerol lipase and lysophosphatidic acid acyltransferase or lysophosphatidylethanolamine acyltransferase activity. They are generally involved in triacylglycerol mobilisation and localized to lipid particles [, ].
Probab=29.17 E-value=13 Score=26.71 Aligned_cols=10 Identities=30% Similarity=0.537 Sum_probs=6.8
Q ss_pred ccccccccCC
Q 031959 2 VRNIANMVPP 11 (150)
Q Consensus 2 iRNaGN~v~~ 11 (150)
+||.||+-.+
T Consensus 87 ~RNlggi~n~ 96 (145)
T PF11815_consen 87 HRNLGGIGNP 96 (145)
T ss_pred hcCccccCCH
Confidence 5777777554
No 101
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=28.42 E-value=56 Score=22.16 Aligned_cols=32 Identities=28% Similarity=0.286 Sum_probs=23.5
Q ss_pred hHHHHHHHHhhcCcceEEEeecCCchhhhhhh
Q 031959 20 AGAAIEYAVLHLKVENIVVIGHSCCGGIKGLM 51 (150)
Q Consensus 20 ~~asleyav~~L~v~~IvV~GHt~CGav~aa~ 51 (150)
+...|.-..+..+-..|+|+|||==|++...+
T Consensus 50 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~ 81 (140)
T PF01764_consen 50 ILDALKELVEKYPDYSIVITGHSLGGALASLA 81 (140)
T ss_dssp HHHHHHHHHHHSTTSEEEEEEETHHHHHHHHH
T ss_pred HHHHHHHHHhcccCccchhhccchHHHHHHHH
Confidence 34555566666677899999999988877543
No 102
>COG3002 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.79 E-value=32 Score=31.15 Aligned_cols=19 Identities=32% Similarity=0.676 Sum_probs=15.1
Q ss_pred ceEEEeecC------------Cchhhhhhhc
Q 031959 34 ENIVVIGHS------------CCGGIKGLMS 52 (150)
Q Consensus 34 ~~IvV~GHt------------~CGav~aa~~ 52 (150)
+.|++|||- +||||-.|..
T Consensus 563 p~Vvl~GHgSqS~NNPy~aaLdCGACgGaSg 593 (880)
T COG3002 563 PLVVLVGHGSQSQNNPYRAALDCGACGGASG 593 (880)
T ss_pred ceEEEeccccccCCCchhhhcccccccCccc
Confidence 789999996 6998876543
No 103
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=27.77 E-value=32 Score=30.93 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=16.6
Q ss_pred cCcceEEEeecCCchhhhhhhc
Q 031959 31 LKVENIVVIGHSCCGGIKGLMS 52 (150)
Q Consensus 31 L~v~~IvV~GHt~CGav~aa~~ 52 (150)
-|-||||||||----.|.-.++
T Consensus 355 hgkkhivvcghityesvshflk 376 (1103)
T KOG1420|consen 355 HGKKHIVVCGHITYESVSHFLK 376 (1103)
T ss_pred cCCeeEEEecceeHHHHHHHHH
Confidence 3668999999987777765444
No 104
>cd00109 KU BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
Probab=27.74 E-value=59 Score=18.71 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=15.4
Q ss_pred EEEEEEEEcccCEEEEeecc
Q 031959 122 ALKGAHYDFVNGKFELWDLD 141 (150)
Q Consensus 122 ~V~G~~Ydi~tG~v~~~~~~ 141 (150)
.+.+|+||.+|++-..+...
T Consensus 15 ~~~~~~yd~~~~~C~~f~~~ 34 (54)
T cd00109 15 YIPRYYYDATTKQCEPFTYG 34 (54)
T ss_pred CccEEEEeCCCCccceeECC
Confidence 46789999999997765443
No 105
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=27.65 E-value=27 Score=25.00 Aligned_cols=22 Identities=9% Similarity=0.076 Sum_probs=16.8
Q ss_pred ceEEEEEEEEcccCEEEEeeccC
Q 031959 120 TLALKGAHYDFVNGKFELWDLDF 142 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~~~ 142 (150)
....|||-||+ ||++.-.....
T Consensus 85 ~CP~Hgw~Fd~-~G~~~~~p~~~ 106 (146)
T cd03538 85 RCPYHAWSFKT-DGSLLAIPLKK 106 (146)
T ss_pred ECCCCCCEECC-CCCEEECCchh
Confidence 35689999997 99988665444
No 106
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b. CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner
Probab=27.57 E-value=23 Score=24.80 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=13.3
Q ss_pred eEEEEEEEEcccCEEEEe
Q 031959 121 LALKGAHYDFVNGKFELW 138 (150)
Q Consensus 121 l~V~G~~Ydi~tG~v~~~ 138 (150)
..-|||.|| .||++.-.
T Consensus 78 CP~Hgw~Fd-~tG~~~~~ 94 (129)
T cd04337 78 CPYHGWEYD-GDGECTKM 94 (129)
T ss_pred eCCCCCEEC-CCCCEEeC
Confidence 447999999 89987543
No 107
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=27.48 E-value=61 Score=22.70 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=13.5
Q ss_pred hcCcceEEEeecCCchh
Q 031959 30 HLKVENIVVIGHSCCGG 46 (150)
Q Consensus 30 ~L~v~~IvV~GHt~CGa 46 (150)
..+-..|+++|+.+||=
T Consensus 11 ~~~~~~v~i~G~~g~GK 27 (173)
T cd04155 11 SSEEPRILILGLDNAGK 27 (173)
T ss_pred cCCccEEEEEccCCCCH
Confidence 34556799999999993
No 108
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=27.26 E-value=60 Score=26.48 Aligned_cols=26 Identities=35% Similarity=0.593 Sum_probs=15.6
Q ss_pred hHHHHHHHHhh----cCcceEEEeecC-Cch
Q 031959 20 AGAAIEYAVLH----LKVENIVVIGHS-CCG 45 (150)
Q Consensus 20 ~~asleyav~~----L~v~~IvV~GHt-~CG 45 (150)
+...|+|-... .+-+.||+|||| +|=
T Consensus 90 I~~~v~ylr~~~~g~~~~~kIVLmGHSTGcQ 120 (303)
T PF08538_consen 90 IAQLVEYLRSEKGGHFGREKIVLMGHSTGCQ 120 (303)
T ss_dssp HHHHHHHHHHHS------S-EEEEEECCHHH
T ss_pred HHHHHHHHHHhhccccCCccEEEEecCCCcH
Confidence 34567776666 367899999996 453
No 109
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=27.12 E-value=36 Score=23.00 Aligned_cols=11 Identities=27% Similarity=0.594 Sum_probs=10.0
Q ss_pred eEEEeecCCch
Q 031959 35 NIVVIGHSCCG 45 (150)
Q Consensus 35 ~IvV~GHt~CG 45 (150)
+|+++|+++||
T Consensus 1 ~i~i~G~~~~G 11 (159)
T cd04159 1 EITLVGLQNSG 11 (159)
T ss_pred CEEEEcCCCCC
Confidence 48999999999
No 110
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=27.09 E-value=58 Score=23.41 Aligned_cols=29 Identities=28% Similarity=0.356 Sum_probs=24.4
Q ss_pred hHHHHHHHHhhcCcceEEEeecCCchhhh
Q 031959 20 AGAAIEYAVLHLKVENIVVIGHSCCGGIK 48 (150)
Q Consensus 20 ~~asleyav~~L~v~~IvV~GHt~CGav~ 48 (150)
....+++-.+.||.+.+.++|||-=|.+.
T Consensus 30 ~~~~~~~~~~~l~~~~~~~vG~S~Gg~~~ 58 (230)
T PF00561_consen 30 LAADLEALREALGIKKINLVGHSMGGMLA 58 (230)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEETHHHHHH
T ss_pred HHHHHHHHHHHhCCCCeEEEEECCChHHH
Confidence 56889999999999999999999844444
No 111
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=27.00 E-value=70 Score=24.85 Aligned_cols=28 Identities=21% Similarity=0.126 Sum_probs=17.8
Q ss_pred HHHHHHHHhhc-CcceEEEeecCCchhhhh
Q 031959 21 GAAIEYAVLHL-KVENIVVIGHSCCGGIKG 49 (150)
Q Consensus 21 ~asleyav~~L-~v~~IvV~GHt~CGav~a 49 (150)
.+.+++--+.+ +.+.|+++|||- |+.-+
T Consensus 86 ~~~~~~l~~~~~g~~~i~l~G~S~-Gg~~a 114 (274)
T TIGR03100 86 AAAIDAFREAAPHLRRIVAWGLCD-AASAA 114 (274)
T ss_pred HHHHHHHHhhCCCCCcEEEEEECH-HHHHH
Confidence 34454433333 678899999998 54444
No 112
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=26.87 E-value=37 Score=23.71 Aligned_cols=13 Identities=38% Similarity=0.578 Sum_probs=11.4
Q ss_pred ceEEEeecCCchh
Q 031959 34 ENIVVIGHSCCGG 46 (150)
Q Consensus 34 ~~IvV~GHt~CGa 46 (150)
..|+|+|+++||=
T Consensus 8 ~~v~v~G~~~~GK 20 (169)
T cd04114 8 FKIVLIGNAGVGK 20 (169)
T ss_pred eEEEEECCCCCCH
Confidence 5799999999993
No 113
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=26.78 E-value=40 Score=24.57 Aligned_cols=11 Identities=45% Similarity=0.755 Sum_probs=10.0
Q ss_pred eEEEeecCCch
Q 031959 35 NIVVIGHSCCG 45 (150)
Q Consensus 35 ~IvV~GHt~CG 45 (150)
.|+++||.++|
T Consensus 2 ~i~i~G~~~~G 12 (192)
T cd01889 2 NVGVLGHVDSG 12 (192)
T ss_pred eEEEEecCCCC
Confidence 48999999999
No 114
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial
Probab=26.71 E-value=1.1e+02 Score=19.10 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=16.4
Q ss_pred eEEEEEEEEcc-cCEEEEeeccC
Q 031959 121 LALKGAHYDFV-NGKFELWDLDF 142 (150)
Q Consensus 121 l~V~G~~Ydi~-tG~v~~~~~~~ 142 (150)
+.|.||++.+. .|++.|++++.
T Consensus 2 v~v~Gwv~~~R~~g~~~Fi~LrD 24 (82)
T cd04318 2 VTVNGWVRSVRDSKKISFIELND 24 (82)
T ss_pred EEEEEeEEEEEcCCcEEEEEEEC
Confidence 57889988777 46777877743
No 115
>KOG3360 consensus Acylphosphatase [Energy production and conversion]
Probab=26.69 E-value=57 Score=22.10 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=16.1
Q ss_pred ceEEEEEEEEcccCEEEE
Q 031959 120 TLALKGAHYDFVNGKFEL 137 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~ 137 (150)
+|.|.||+.+.+.|.|+=
T Consensus 33 ~lGlrGWv~Nt~~GtvkG 50 (98)
T KOG3360|consen 33 KLGLRGWVMNTSEGTVKG 50 (98)
T ss_pred hhcceEEEEecCCceEEE
Confidence 678999999999999873
No 116
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=26.62 E-value=40 Score=23.48 Aligned_cols=11 Identities=27% Similarity=0.809 Sum_probs=10.2
Q ss_pred eEEEeecCCch
Q 031959 35 NIVVIGHSCCG 45 (150)
Q Consensus 35 ~IvV~GHt~CG 45 (150)
.|+|+|+.+||
T Consensus 2 ki~viG~~~~G 12 (172)
T cd01862 2 KVIILGDSGVG 12 (172)
T ss_pred EEEEECCCCCC
Confidence 58999999999
No 117
>PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin []. Ca2+-release from the sarcoplasmic or endoplasmic reticulum, the intracellular Ca2+ store, is mediated by the ryanodine receptor (RyR) and/or the inositol trisphosphate receptor (IP3R).; GO: 0005515 protein binding; PDB: 2V24_A 3EK9_A 2AFJ_A 2IWG_E 3EMW_A 2WL1_A 3TOJ_B 2VOK_A 2VOL_B 2FNJ_A ....
Probab=26.32 E-value=99 Score=20.33 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=17.1
Q ss_pred eEEEEEEEEcccCEEEEeec
Q 031959 121 LALKGAHYDFVNGKFELWDL 140 (150)
Q Consensus 121 l~V~G~~Ydi~tG~v~~~~~ 140 (150)
-.++|..+|.++|.|.+..-
T Consensus 67 ~dvIG~~lD~~~g~l~F~~n 86 (124)
T PF00622_consen 67 GDVIGCGLDLDNGELSFYKN 86 (124)
T ss_dssp TSEEEEEEETTTTEEEEEET
T ss_pred CcEEEEEEeecccEEEEEEC
Confidence 35999999999999998743
No 118
>smart00449 SPRY Domain in SPla and the RYanodine Receptor. Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues.
Probab=26.07 E-value=96 Score=20.52 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=18.1
Q ss_pred eEEEEEEEEcccCEEEEeeccC
Q 031959 121 LALKGAHYDFVNGKFELWDLDF 142 (150)
Q Consensus 121 l~V~G~~Ydi~tG~v~~~~~~~ 142 (150)
-.++|..+|.++|.|.+..-..
T Consensus 66 gd~iGv~lD~~~g~l~F~~ng~ 87 (122)
T smart00449 66 GDVIGCFLDLEAGTISFYKNGK 87 (122)
T ss_pred CCEEEEEEECCCCEEEEEECCC
Confidence 4599999999999999875444
No 119
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=25.36 E-value=39 Score=25.45 Aligned_cols=11 Identities=64% Similarity=0.996 Sum_probs=9.9
Q ss_pred eEEEeecCCch
Q 031959 35 NIVVIGHSCCG 45 (150)
Q Consensus 35 ~IvV~GHt~CG 45 (150)
.|.++||.+||
T Consensus 1 nv~i~Gh~~~G 11 (219)
T cd01883 1 NLVVIGHVDAG 11 (219)
T ss_pred CEEEecCCCCC
Confidence 37899999999
No 120
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=25.36 E-value=41 Score=23.39 Aligned_cols=11 Identities=27% Similarity=0.640 Sum_probs=9.8
Q ss_pred EEEeecCCchh
Q 031959 36 IVVIGHSCCGG 46 (150)
Q Consensus 36 IvV~GHt~CGa 46 (150)
|+++|+.+||=
T Consensus 2 v~lvG~~~~GK 12 (158)
T cd04151 2 ILILGLDNAGK 12 (158)
T ss_pred EEEECCCCCCH
Confidence 78999999994
No 121
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=25.25 E-value=51 Score=27.76 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=17.8
Q ss_pred HHhhcCcceEEEeecCCchhhh
Q 031959 27 AVLHLKVENIVVIGHSCCGGIK 48 (150)
Q Consensus 27 av~~L~v~~IvV~GHt~CGav~ 48 (150)
.+...-++.|+|+|+++||=-+
T Consensus 213 ~vr~~~~~~IvI~G~~gsGKTT 234 (399)
T PRK08099 213 EVRPFFVRTVAILGGESSGKST 234 (399)
T ss_pred HHhhCCCcEEEEEcCCCCCHHH
Confidence 4566788999999999999433
No 122
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=24.81 E-value=43 Score=24.95 Aligned_cols=11 Identities=18% Similarity=0.232 Sum_probs=9.8
Q ss_pred eEEEeecCCch
Q 031959 35 NIVVIGHSCCG 45 (150)
Q Consensus 35 ~IvV~GHt~CG 45 (150)
.|.|+||.++|
T Consensus 1 ~i~iiG~~~~G 11 (208)
T cd04166 1 RFLTCGSVDDG 11 (208)
T ss_pred CEEEEECCCCC
Confidence 37899999999
No 123
>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H). S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits.
Probab=24.65 E-value=37 Score=23.71 Aligned_cols=22 Identities=9% Similarity=0.096 Sum_probs=17.2
Q ss_pred ceEEEEEEEEcccCEEEEeeccC
Q 031959 120 TLALKGAHYDFVNGKFELWDLDF 142 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~~~ 142 (150)
....|||.||++ |++.-+....
T Consensus 62 ~CPyHgw~fdl~-G~l~~~p~~~ 83 (129)
T cd03539 62 VCPYHQWNYSLK-GDLQGVPFRR 83 (129)
T ss_pred ECCCCCCEECCC-CCEeeccccc
Confidence 356899999997 9988876543
No 124
>PF12904 Collagen_bind_2: Putative collagen-binding domain of a collagenase ; InterPro: IPR024749 This domain is likely to be the collagen-binding domain of a family of bacterial collagenase enzymes. The structure of one family member, Q8A905 from SWISSPROT, has been characterised. The domain occurs in the C-terminal region of the protein.; PDB: 3KZS_D.
Probab=24.39 E-value=1.2e+02 Score=20.27 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=15.2
Q ss_pred EEEEEEEEcccCEEEEeec
Q 031959 122 ALKGAHYDFVNGKFELWDL 140 (150)
Q Consensus 122 ~V~G~~Ydi~tG~v~~~~~ 140 (150)
.+..++||..||+.+.+..
T Consensus 48 ~~~a~WfdPR~G~~~~~g~ 66 (93)
T PF12904_consen 48 KVKAWWFDPRTGKYTYIGE 66 (93)
T ss_dssp EEEEEEEETTT-BEEEEEE
T ss_pred ceeEEEEcCCCCCEEEeee
Confidence 4789999999999988753
No 125
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=24.29 E-value=42 Score=26.12 Aligned_cols=11 Identities=55% Similarity=0.978 Sum_probs=9.9
Q ss_pred eEEEeecCCch
Q 031959 35 NIVVIGHSCCG 45 (150)
Q Consensus 35 ~IvV~GHt~CG 45 (150)
.|+++||++||
T Consensus 1 ni~ivG~~gsG 11 (268)
T cd04170 1 NIALVGHSGSG 11 (268)
T ss_pred CEEEECCCCCC
Confidence 37899999999
No 126
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=24.21 E-value=79 Score=24.87 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=23.1
Q ss_pred ceEEEEEEEEcccCEEEEeeccCCCCCC
Q 031959 120 TLALKGAHYDFVNGKFELWDLDFNILPS 147 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~~~~~~~~ 147 (150)
+..-|+..||+.|++++.+....+.|=+
T Consensus 43 d~~a~s~~yD~~tn~~rpl~v~td~FCS 70 (243)
T PF07250_consen 43 DGPAHSVEYDPNTNTFRPLTVQTDTFCS 70 (243)
T ss_pred CceEEEEEEecCCCcEEeccCCCCCccc
Confidence 3478999999999999998887776644
No 127
>PRK13946 shikimate kinase; Provisional
Probab=24.17 E-value=48 Score=24.24 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=18.6
Q ss_pred HHhhcCcceEEEeecCCchhhhh
Q 031959 27 AVLHLKVENIVVIGHSCCGGIKG 49 (150)
Q Consensus 27 av~~L~v~~IvV~GHt~CGav~a 49 (150)
|...|.-+.|+++|..+||--+.
T Consensus 4 ~~~~~~~~~I~l~G~~GsGKsti 26 (184)
T PRK13946 4 ARAALGKRTVVLVGLMGAGKSTV 26 (184)
T ss_pred hhhccCCCeEEEECCCCCCHHHH
Confidence 45567888999999999996554
No 128
>PLN02965 Probable pheophorbidase
Probab=24.15 E-value=87 Score=23.65 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=22.3
Q ss_pred HHHHHHHhhcCc-ceEEEeecCCchhhhhh
Q 031959 22 AAIEYAVLHLKV-ENIVVIGHSCCGGIKGL 50 (150)
Q Consensus 22 asleyav~~L~v-~~IvV~GHt~CGav~aa 50 (150)
..+.=.+..|+. +.++++|||-.|.+...
T Consensus 59 ~dl~~~l~~l~~~~~~~lvGhSmGG~ia~~ 88 (255)
T PLN02965 59 RPLFALLSDLPPDHKVILVGHSIGGGSVTE 88 (255)
T ss_pred HHHHHHHHhcCCCCCEEEEecCcchHHHHH
Confidence 345566677887 59999999999987653
No 129
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=23.97 E-value=1e+02 Score=22.09 Aligned_cols=30 Identities=27% Similarity=0.214 Sum_probs=24.7
Q ss_pred hHHHHHHHHhhcCcceEEEeecCCchhhhh
Q 031959 20 AGAAIEYAVLHLKVENIVVIGHSCCGGIKG 49 (150)
Q Consensus 20 ~~asleyav~~L~v~~IvV~GHt~CGav~a 49 (150)
....+...+..++.+.+.++|||-=|++..
T Consensus 65 ~~~~~~~~i~~~~~~~v~liG~S~Gg~~a~ 94 (251)
T TIGR02427 65 LADDVLALLDHLGIERAVFCGLSLGGLIAQ 94 (251)
T ss_pred HHHHHHHHHHHhCCCceEEEEeCchHHHHH
Confidence 456677888889999999999999887654
No 130
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=23.82 E-value=45 Score=23.55 Aligned_cols=12 Identities=50% Similarity=0.706 Sum_probs=10.8
Q ss_pred ceEEEeecCCch
Q 031959 34 ENIVVIGHSCCG 45 (150)
Q Consensus 34 ~~IvV~GHt~CG 45 (150)
-.|+++|+++||
T Consensus 3 ~ki~vvG~~~vG 14 (170)
T cd04115 3 FKIIVIGDSNVG 14 (170)
T ss_pred eEEEEECCCCCC
Confidence 468999999999
No 131
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=23.71 E-value=74 Score=26.15 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=24.6
Q ss_pred HHHHhhcCHHHHHHHHcCceEEEEEEEEc
Q 031959 102 SLGNLLTYPFVRESVVKNTLALKGAHYDF 130 (150)
Q Consensus 102 ~v~~L~~~p~i~~~v~~g~l~V~G~~Ydi 130 (150)
-.++||++|.+|+.+++..|.+--++|=+
T Consensus 9 R~RRlRk~~~~R~lv~Et~L~~~dLI~Pi 37 (330)
T COG0113 9 RPRRLRKSPALRRLVRETRLTPNDLIYPI 37 (330)
T ss_pred hhhhccCCHHHHHHHHhcCCCHHHeeEeE
Confidence 45789999999999999999877777765
No 132
>smart00131 KU BPTI/Kunitz family of serine protease inhibitors. Serine protease inhibitors. One member of the family is encoded by an alternatively-spliced form of Alzheimer's amyloid beta-protein.
Probab=23.38 E-value=97 Score=17.66 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=16.4
Q ss_pred EEEEEEEEcccCEEEEeeccC
Q 031959 122 ALKGAHYDFVNGKFELWDLDF 142 (150)
Q Consensus 122 ~V~G~~Ydi~tG~v~~~~~~~ 142 (150)
....|+||.+|++-..+...+
T Consensus 15 ~~~~w~yd~~~~~C~~f~~~g 35 (53)
T smart00131 15 SIPRYYYDPETGTCEPFTYGG 35 (53)
T ss_pred CeeEEEEeCCCCccceeECCC
Confidence 567899999999977665443
No 133
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with
Probab=23.12 E-value=1.1e+02 Score=19.19 Aligned_cols=22 Identities=14% Similarity=-0.016 Sum_probs=14.3
Q ss_pred eEEEEEEEEcc-cCEEEEeeccC
Q 031959 121 LALKGAHYDFV-NGKFELWDLDF 142 (150)
Q Consensus 121 l~V~G~~Ydi~-tG~v~~~~~~~ 142 (150)
+.|.||++... .|++.|++++.
T Consensus 2 V~v~Gwv~~~R~~g~~~Fi~LrD 24 (84)
T cd04323 2 VKVFGWVHRLRSQKKLMFLVLRD 24 (84)
T ss_pred EEEEEEEEEEecCCCcEEEEEEc
Confidence 67888888665 35566666543
No 134
>PF14253 AbiH: Bacteriophage abortive infection AbiH
Probab=22.42 E-value=55 Score=25.21 Aligned_cols=13 Identities=31% Similarity=0.715 Sum_probs=11.1
Q ss_pred cCcceEEEeecCC
Q 031959 31 LKVENIVVIGHSC 43 (150)
Q Consensus 31 L~v~~IvV~GHt~ 43 (150)
-.++.|+|+|||=
T Consensus 232 ~~i~~I~i~GhSl 244 (270)
T PF14253_consen 232 SDIDEIIIYGHSL 244 (270)
T ss_pred cCCCEEEEEeCCC
Confidence 4779999999985
No 135
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=22.35 E-value=1.3e+02 Score=19.97 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=18.2
Q ss_pred cCceEEEEEEEEcc-cCEEEEeeccC
Q 031959 118 KNTLALKGAHYDFV-NGKFELWDLDF 142 (150)
Q Consensus 118 ~g~l~V~G~~Ydi~-tG~v~~~~~~~ 142 (150)
..++.|+||+..+. .|++.|++++.
T Consensus 12 g~~V~v~Gwv~~~R~~g~~~Fi~LrD 37 (108)
T cd04316 12 GEEVTVAGWVHEIRDLGGIKFVILRD 37 (108)
T ss_pred CCEEEEEEEEEeeeccCCeEEEEEec
Confidence 45799999998776 46667766644
No 136
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=22.35 E-value=56 Score=22.12 Aligned_cols=11 Identities=45% Similarity=0.954 Sum_probs=10.3
Q ss_pred eEEEeecCCch
Q 031959 35 NIVVIGHSCCG 45 (150)
Q Consensus 35 ~IvV~GHt~CG 45 (150)
.|+++|++++|
T Consensus 2 kv~liG~~~vG 12 (142)
T TIGR02528 2 RIMFIGSVGCG 12 (142)
T ss_pred eEEEECCCCCC
Confidence 58999999999
No 137
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=22.33 E-value=51 Score=29.77 Aligned_cols=12 Identities=33% Similarity=0.722 Sum_probs=0.0
Q ss_pred ceEEEeecCCch
Q 031959 34 ENIVVIGHSCCG 45 (150)
Q Consensus 34 ~~IvV~GHt~CG 45 (150)
+.+||+|+|+||
T Consensus 67 qvlIviGeTGsG 78 (674)
T KOG0922|consen 67 QVLIVIGETGSG 78 (674)
T ss_pred CEEEEEcCCCCC
No 138
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.
Probab=22.29 E-value=31 Score=22.57 Aligned_cols=17 Identities=12% Similarity=0.301 Sum_probs=13.2
Q ss_pred ceEEEEEEEEcccCEEEE
Q 031959 120 TLALKGAHYDFVNGKFEL 137 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~ 137 (150)
....|||.|| .||++.-
T Consensus 57 ~CP~Hg~~Fd-~~G~~~~ 73 (91)
T cd03477 57 DCPCHGSRFS-YDGEVIE 73 (91)
T ss_pred ECCCCCCEEC-CCCcEee
Confidence 3458999999 7999643
No 139
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=22.25 E-value=53 Score=24.50 Aligned_cols=12 Identities=42% Similarity=0.562 Sum_probs=10.4
Q ss_pred eEEEeecCCchh
Q 031959 35 NIVVIGHSCCGG 46 (150)
Q Consensus 35 ~IvV~GHt~CGa 46 (150)
.|.++||.++|=
T Consensus 4 ni~iiGh~~~GK 15 (195)
T cd01884 4 NVGTIGHVDHGK 15 (195)
T ss_pred EEEEECCCCCCH
Confidence 488999999993
No 140
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=22.22 E-value=55 Score=25.62 Aligned_cols=16 Identities=44% Similarity=0.671 Sum_probs=13.1
Q ss_pred CcceEEEeecCCchhh
Q 031959 32 KVENIVVIGHSCCGGI 47 (150)
Q Consensus 32 ~v~~IvV~GHt~CGav 47 (150)
+=..+||+|-|+||=.
T Consensus 30 ~ge~vv~lGpSGcGKT 45 (259)
T COG4525 30 SGELVVVLGPSGCGKT 45 (259)
T ss_pred CCCEEEEEcCCCccHH
Confidence 3468999999999943
No 141
>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad
Probab=22.08 E-value=36 Score=23.13 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=13.5
Q ss_pred eEEEEEEEEcccCEEEEe
Q 031959 121 LALKGAHYDFVNGKFELW 138 (150)
Q Consensus 121 l~V~G~~Ydi~tG~v~~~ 138 (150)
...|||.|| .||+....
T Consensus 65 Cp~Hg~~fd-~~G~~~~~ 81 (116)
T cd03532 65 CGYHGLEFD-SDGRCVHM 81 (116)
T ss_pred eCCCCcEEc-CCCCEEeC
Confidence 458999999 69986654
No 142
>PF07166 DUF1398: Protein of unknown function (DUF1398); InterPro: IPR009833 This entry is represented by Bacteriophage DE3, Orf: ECD_10033. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Escherichia coli and Salmonella species. The function of this family is unknown.; PDB: 2HH8_A.
Probab=22.06 E-value=1.8e+02 Score=20.52 Aligned_cols=32 Identities=9% Similarity=0.147 Sum_probs=21.6
Q ss_pred CHHHHHHHHcCceEEEEEEEEcccCEEEEeeccC
Q 031959 109 YPFVRESVVKNTLALKGAHYDFVNGKFELWDLDF 142 (150)
Q Consensus 109 ~p~i~~~v~~g~l~V~G~~Ydi~tG~v~~~~~~~ 142 (150)
.|.+-+.++ ++.|....|.+.||.++.+..++
T Consensus 18 Fp~~~~elk--~~gV~~Y~y~V~~G~~~y~~~~d 49 (125)
T PF07166_consen 18 FPQFIQELK--RMGVSHYIYYVADGNTTYVGEND 49 (125)
T ss_dssp -HHHHHHHH--HH-SSEEEEETTTSEEEEE-SSS
T ss_pred hHHHHHHHH--hcCceEEEEEEecCcEEEEEcCC
Confidence 444444443 46799999999999999985554
No 143
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=21.96 E-value=62 Score=23.22 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=13.1
Q ss_pred cCcceEEEeecCCch
Q 031959 31 LKVENIVVIGHSCCG 45 (150)
Q Consensus 31 L~v~~IvV~GHt~CG 45 (150)
.+-..|+|+|++++|
T Consensus 16 ~~~~~i~ivG~~~~G 30 (179)
T TIGR03598 16 DDGPEIAFAGRSNVG 30 (179)
T ss_pred CCCCEEEEEcCCCCC
Confidence 456789999999999
No 144
>PRK07581 hypothetical protein; Validated
Probab=21.91 E-value=75 Score=25.28 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=19.1
Q ss_pred hhcCcceE-EEeecCCchhhhhhh
Q 031959 29 LHLKVENI-VVIGHSCCGGIKGLM 51 (150)
Q Consensus 29 ~~L~v~~I-vV~GHt~CGav~aa~ 51 (150)
.+||++.+ +|+|||--|.+...+
T Consensus 118 ~~lgi~~~~~lvG~S~GG~va~~~ 141 (339)
T PRK07581 118 EKFGIERLALVVGWSMGAQQTYHW 141 (339)
T ss_pred HHhCCCceEEEEEeCHHHHHHHHH
Confidence 57999994 799999999988543
No 145
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=21.91 E-value=56 Score=22.88 Aligned_cols=12 Identities=33% Similarity=0.769 Sum_probs=10.4
Q ss_pred eEEEeecCCchh
Q 031959 35 NIVVIGHSCCGG 46 (150)
Q Consensus 35 ~IvV~GHt~CGa 46 (150)
.|+|+|+++||=
T Consensus 2 ki~vvG~~~vGK 13 (161)
T cd04124 2 KIILLGDSAVGK 13 (161)
T ss_pred EEEEECCCCCCH
Confidence 489999999994
No 146
>PRK14442 acylphosphatase; Provisional
Probab=21.68 E-value=80 Score=20.73 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=17.9
Q ss_pred ceEEEEEEEEcccCEEEEeec
Q 031959 120 TLALKGAHYDFVNGKFELWDL 140 (150)
Q Consensus 120 ~l~V~G~~Ydi~tG~v~~~~~ 140 (150)
++.|.||+-++.+|.|+.+-.
T Consensus 29 ~~gl~G~V~N~~dG~Vei~~q 49 (91)
T PRK14442 29 RLELDGWVRNLDDGRVEVVWE 49 (91)
T ss_pred HcCCEEEEEECCCCCEEEEEE
Confidence 577999999999999887643
No 147
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=21.61 E-value=52 Score=22.42 Aligned_cols=11 Identities=36% Similarity=0.561 Sum_probs=9.9
Q ss_pred eEEEeecCCch
Q 031959 35 NIVVIGHSCCG 45 (150)
Q Consensus 35 ~IvV~GHt~CG 45 (150)
.|+++|+++||
T Consensus 1 ~i~l~G~~g~G 11 (170)
T cd01876 1 EIAFAGRSNVG 11 (170)
T ss_pred CEEEEcCCCCC
Confidence 48999999999
No 148
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=21.38 E-value=63 Score=22.84 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=10.3
Q ss_pred ceEEEeecCCch
Q 031959 34 ENIVVIGHSCCG 45 (150)
Q Consensus 34 ~~IvV~GHt~CG 45 (150)
|.|.|+|++++|
T Consensus 1 pvv~VvG~~~sG 12 (140)
T PF03205_consen 1 PVVQVVGPKNSG 12 (140)
T ss_dssp -EEEEEESTTSS
T ss_pred CEEEEECCCCCC
Confidence 468999999999
No 149
>COG1903 CbiD Cobalamin biosynthesis protein CbiD [Coenzyme metabolism]
Probab=21.32 E-value=91 Score=26.19 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=18.1
Q ss_pred hHHHHHHHHhhcCcceEEEeecCC
Q 031959 20 AGAAIEYAVLHLKVENIVVIGHSC 43 (150)
Q Consensus 20 ~~asleyav~~L~v~~IvV~GHt~ 43 (150)
+...|++|..+ +++.|+++||-+
T Consensus 236 vG~~l~~a~~~-~~~~i~i~G~pG 258 (367)
T COG1903 236 VGSMLKEAREL-GVKEILIFGHPG 258 (367)
T ss_pred HHHHHHHHHhc-CCCEEEEEcChH
Confidence 34567777654 999999999975
No 150
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=21.06 E-value=64 Score=28.65 Aligned_cols=29 Identities=31% Similarity=0.352 Sum_probs=21.1
Q ss_pred HHHHHHHhhc-----CcceEEEeecCCchhhhhh
Q 031959 22 AAIEYAVLHL-----KVENIVVIGHSCCGGIKGL 50 (150)
Q Consensus 22 asleyav~~L-----~v~~IvV~GHt~CGav~aa 50 (150)
--++-|++.+ .=+.|+|+||+||-+++++
T Consensus 53 ~~m~~a~~ri~~ai~~~e~I~I~gDyD~DGitst 86 (575)
T PRK11070 53 SGIEKAVELLYNALREGTRIIVVGDFDADGATST 86 (575)
T ss_pred hCHHHHHHHHHHHHHCCCEEEEEEecCccHHHHH
Confidence 3344555443 4479999999999999875
No 151
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=21.04 E-value=1e+02 Score=20.29 Aligned_cols=14 Identities=14% Similarity=0.062 Sum_probs=12.0
Q ss_pred EEEEcccCEEEEee
Q 031959 126 AHYDFVNGKFELWD 139 (150)
Q Consensus 126 ~~Ydi~tG~v~~~~ 139 (150)
+.||+.|++++.+-
T Consensus 40 l~ydp~t~~~~vl~ 53 (89)
T PF03088_consen 40 LRYDPSTKETTVLL 53 (89)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEEECCCCeEEEeh
Confidence 68999999998763
No 152
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=21.01 E-value=65 Score=21.88 Aligned_cols=11 Identities=27% Similarity=0.468 Sum_probs=10.1
Q ss_pred eEEEeecCCch
Q 031959 35 NIVVIGHSCCG 45 (150)
Q Consensus 35 ~IvV~GHt~CG 45 (150)
+|++||..+||
T Consensus 1 lii~~G~pgsG 11 (143)
T PF13671_consen 1 LIILCGPPGSG 11 (143)
T ss_dssp EEEEEESTTSS
T ss_pred CEEEECCCCCC
Confidence 58999999999
No 153
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=20.99 E-value=59 Score=23.02 Aligned_cols=13 Identities=31% Similarity=0.598 Sum_probs=11.1
Q ss_pred ceEEEeecCCchh
Q 031959 34 ENIVVIGHSCCGG 46 (150)
Q Consensus 34 ~~IvV~GHt~CGa 46 (150)
..|+++|+.+||=
T Consensus 2 ~kv~l~G~~g~GK 14 (180)
T cd04137 2 RKIAVLGSRSVGK 14 (180)
T ss_pred eEEEEECCCCCCH
Confidence 4689999999993
No 154
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=20.84 E-value=37 Score=23.55 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=14.9
Q ss_pred eEEEEEEEEcccCEEEEee
Q 031959 121 LALKGAHYDFVNGKFELWD 139 (150)
Q Consensus 121 l~V~G~~Ydi~tG~v~~~~ 139 (150)
...|||.|| .||++.-..
T Consensus 63 CP~Hg~~Fd-~~G~~~~~p 80 (123)
T cd03542 63 CPFHGWTFS-NTGKLLKVK 80 (123)
T ss_pred CcCCCCEec-CCccEEECC
Confidence 558999999 899987554
No 155
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=20.41 E-value=59 Score=22.85 Aligned_cols=12 Identities=42% Similarity=0.673 Sum_probs=10.4
Q ss_pred eEEEeecCCchh
Q 031959 35 NIVVIGHSCCGG 46 (150)
Q Consensus 35 ~IvV~GHt~CGa 46 (150)
.|+|+|+++||=
T Consensus 2 kv~ivG~~~vGK 13 (166)
T cd01893 2 RIVLIGDEGVGK 13 (166)
T ss_pred EEEEECCCCCCH
Confidence 588999999993
Done!