BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031963
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VKV|A Chain A, Tetr (Bd) Variant L17g With Reverse Phenotype
Length = 208
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 50 RAGMYALALIFVFTLGVIAEWLTHS 74
R G+YA++ + FTLG + E H+
Sbjct: 128 RDGLYAISAVSHFTLGAVLEQQEHT 152
>pdb|1BJY|A Chain A, Tetracycline Chelated Mg2+-Ion Initiates Helix Unwinding
For Tet Repressor Induction
pdb|1BJY|B Chain B, Tetracycline Chelated Mg2+-Ion Initiates Helix Unwinding
For Tet Repressor Induction
pdb|2FJ1|A Chain A, Crystal Structure Analysis Of Tet Repressor (Class D) In
Complex With 7-Chlortetracycline-Nickel(Ii)
pdb|2O7O|A Chain A, Crystal Structure Analysis Of Tetr(D) Complex With
Doxycycline
pdb|1BJ0|A Chain A, Tetracycline Chelated Mg2+-Ion Initiates Helix Unwinding
For Tet Repressor Induction
pdb|1BJZ|A Chain A, Tetracycline Chelated Mg2+-Ion Initiates Helix Unwinding
For Tet Repressor Induction
pdb|1ORK|A Chain A, Tet Repressor, Class D In Complex With
9-(N,N-Dimethylglycylamido)-6-
Demethyl-6-Deoxy-Tetracycline
pdb|2VKE|A Chain A, Tet Repressor Class D Complexed With Cobalt And
Tetracycline
pdb|2X6O|A Chain A, Tet Repressor Class D In Complex With
7-Chlor-2-Cyano-Iso-Tetracycline
pdb|2X9D|A Chain A, Tet Repressor (Class D) In Complex With Iso-7
Chlortetracycline
pdb|2XPS|A Chain A, Tetr(D) In Complex With Anhydrotetracycline And Magnesium
pdb|2XPT|A Chain A, Tetr(D) In Complex With Anhydrotetracycline And Potassium
pdb|2XPU|A Chain A, Tetr(D) In Complex With Anhydrotetracycline.
pdb|2XPV|A Chain A, Tetr(D) In Complex With Minocycline And Magnesium.
pdb|2XPW|A Chain A, Tetr(D) In Complex With Oxytetracycline And Magnesium.
pdb|4ABZ|A Chain A, Tetr(D) In Complex With Tigecycline And Magnesium
Length = 207
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 50 RAGMYALALIFVFTLGVIAEWLTHS 74
R G+YA++ + FTLG + E H+
Sbjct: 127 RDGLYAISAVSHFTLGAVLEQQEHT 151
>pdb|1QPI|A Chain A, Crystal Structure Of Tetracycline RepressorOPERATOR
COMPLEX
Length = 203
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 50 RAGMYALALIFVFTLGVIAEWLTHS 74
R G+YA++ + FTLG + E H+
Sbjct: 125 RDGLYAISAVSHFTLGAVLEQQEHT 149
>pdb|1A6I|A Chain A, Tet Repressor, Class D Variant
Length = 217
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 50 RAGMYALALIFVFTLGVIAEWLTHS 74
R G+YA++ + FTLG + E H+
Sbjct: 127 RDGLYAISAVSHFTLGAVLEQQEHT 151
>pdb|2TCT|A Chain A, The Complex Formed Between Tet Repressor And
Tetracycline-mg2+ Reveals Mechanism Of Antibiotic
Resistance
pdb|2XB5|A Chain A, Tet Repressor (Class D) In Complex With 7-Iodotetracycline
pdb|4AUX|A Chain A, Tet Repressor Class D In Complex With 9-Nitrotetracycline
Length = 207
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 50 RAGMYALALIFVFTLGVIAEWLTHS 74
R G+YA++ + FTLG + E H+
Sbjct: 127 RDGLYAISAVSHFTLGAVLEQQEHT 151
>pdb|2XRL|A Chain A, Tet-Repressor Class D T103a With Doxycycline
Length = 207
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 50 RAGMYALALIFVFTLGVIAEWLTHS 74
R G+YA++ + FTLG + E H+
Sbjct: 127 RDGLYAISAVSHFTLGAVLEQQEHT 151
>pdb|2TRT|A Chain A, Tetracycline Repressor Class D
Length = 217
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 50 RAGMYALALIFVFTLGVIAEWLTHS 74
R G+YA++ + FTLG + E H+
Sbjct: 127 RDGLYAISAVSHFTLGAVLEQQEHT 151
>pdb|3FK6|A Chain A, Crystal Structure Of Tetr Triple Mutant (H64k, S135l,
S138i)
pdb|3FK6|B Chain B, Crystal Structure Of Tetr Triple Mutant (H64k, S135l,
S138i)
pdb|3FK7|A Chain A, Crystal Structure Of Tetr Triple Mutant (H64k, S135l,
S138i) In Complex With 4-Ddma-Atc
pdb|3FK7|B Chain B, Crystal Structure Of Tetr Triple Mutant (H64k, S135l,
S138i) In Complex With 4-Ddma-Atc
Length = 208
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 50 RAGMYALALIFVFTLGVIAEWLTHS 74
R G+YA+ + FTLG + E H+
Sbjct: 128 RDGLYAILAVIHFTLGAVLEQQEHT 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,989,534
Number of Sequences: 62578
Number of extensions: 123110
Number of successful extensions: 144
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 136
Number of HSP's gapped (non-prelim): 8
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)