Query 031963
Match_columns 150
No_of_seqs 108 out of 705
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 07:46:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031963.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031963hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3386 Copper transporter [In 100.0 1.2E-36 2.5E-41 233.9 14.3 112 24-135 11-143 (155)
2 PF04145 Ctr: Ctr copper trans 100.0 1.9E-34 4.2E-39 215.2 4.0 102 29-130 1-144 (144)
3 PF11446 DUF2897: Protein of u 92.1 0.16 3.5E-06 32.8 2.7 28 109-136 1-28 (55)
4 PF03672 UPF0154: Uncharacteri 66.9 5.6 0.00012 26.5 2.3 20 114-133 2-21 (64)
5 PF06800 Sugar_transport: Suga 66.1 78 0.0017 26.6 9.5 92 40-134 91-186 (269)
6 PRK01844 hypothetical protein; 61.3 7 0.00015 26.6 2.0 18 115-132 10-27 (72)
7 PRK00523 hypothetical protein; 58.9 8.3 0.00018 26.2 2.0 18 115-132 11-28 (72)
8 PF14012 DUF4229: Protein of u 57.6 17 0.00038 24.1 3.5 47 88-137 6-58 (69)
9 PRK15051 4-amino-4-deoxy-L-ara 56.9 69 0.0015 22.8 10.3 46 88-134 37-89 (111)
10 COG3763 Uncharacterized protei 56.9 12 0.00026 25.4 2.5 21 113-133 8-28 (71)
11 COG2991 Uncharacterized protei 56.6 9.6 0.00021 26.1 2.0 23 112-135 7-29 (77)
12 PF09578 Spore_YabQ: Spore cor 46.1 89 0.0019 20.9 8.4 66 62-131 9-79 (80)
13 COG5336 Uncharacterized protei 43.5 67 0.0015 23.7 4.9 54 85-140 49-102 (116)
14 PRK01100 putative accessory ge 42.2 1.6E+02 0.0035 23.4 7.4 33 111-146 168-208 (210)
15 PF12273 RCR: Chitin synthesis 41.8 24 0.00051 25.8 2.4 22 55-76 5-26 (130)
16 COG3105 Uncharacterized protei 41.1 26 0.00057 26.6 2.5 18 114-131 10-27 (138)
17 PF15050 SCIMP: SCIMP protein 40.9 21 0.00046 26.8 2.0 19 112-130 7-28 (133)
18 PF13829 DUF4191: Domain of un 40.4 83 0.0018 25.8 5.5 36 99-134 40-75 (224)
19 PRK02898 cobalt transport prot 39.9 22 0.00047 25.7 1.8 28 86-129 63-90 (100)
20 PRK10255 PTS system N-acetyl g 38.8 57 0.0012 30.7 4.9 36 96-131 74-114 (648)
21 PF06376 DUF1070: Protein of u 38.8 24 0.00053 20.6 1.6 13 97-109 15-27 (34)
22 PF06612 DUF1146: Protein of u 38.7 29 0.00062 21.6 2.0 13 64-76 4-16 (48)
23 PRK11431 multidrug efflux syst 37.0 1.5E+02 0.0033 21.1 7.6 69 63-134 7-82 (105)
24 PF10031 DUF2273: Small integr 36.7 1.1E+02 0.0023 19.2 5.1 31 98-128 14-48 (51)
25 TIGR02327 int_mem_ywzB conserv 36.6 32 0.0007 23.0 2.2 18 115-132 40-57 (68)
26 PF11772 EpuA: DNA-directed RN 35.5 18 0.0004 22.5 0.8 19 115-133 8-26 (47)
27 PHA00024 IX minor coat protein 33.5 64 0.0014 18.7 2.8 24 109-132 2-25 (33)
28 PRK10929 putative mechanosensi 33.4 3.4E+02 0.0074 27.4 9.4 78 50-127 832-915 (1109)
29 PRK13499 rhamnose-proton sympo 32.7 3.3E+02 0.0072 23.6 8.5 37 40-76 119-158 (345)
30 PRK11715 inner membrane protei 32.5 2.1E+02 0.0046 25.7 7.2 61 51-121 303-367 (436)
31 PF11085 YqhR: Conserved membr 31.8 1.8E+02 0.004 22.9 6.0 27 107-133 130-156 (173)
32 PF10112 Halogen_Hydrol: 5-bro 31.7 2.3E+02 0.005 21.9 6.7 37 90-128 10-46 (199)
33 TIGR00847 ccoS cytochrome oxid 28.9 61 0.0013 20.5 2.4 29 116-146 9-37 (51)
34 PF03597 CcoS: Cytochrome oxid 28.6 70 0.0015 19.6 2.6 29 116-146 8-36 (45)
35 PRK10650 multidrug efflux syst 27.7 2.3E+02 0.0051 20.3 5.9 68 63-133 13-87 (109)
36 PF06305 DUF1049: Protein of u 27.6 69 0.0015 20.3 2.6 20 113-132 22-41 (68)
37 COG0472 Rfe UDP-N-acetylmuramy 27.2 1.1E+02 0.0024 26.0 4.4 26 111-136 188-213 (319)
38 PF06123 CreD: Inner membrane 27.1 4.6E+02 0.01 23.5 8.6 59 51-119 297-359 (430)
39 PRK10334 mechanosensitive chan 26.1 3.9E+02 0.0083 22.3 9.5 43 86-128 66-110 (286)
40 TIGR01165 cbiN cobalt transpor 26.1 16 0.00035 25.9 -0.7 16 86-101 63-78 (91)
41 PRK00753 psbL photosystem II r 26.0 97 0.0021 18.5 2.7 20 50-69 15-34 (39)
42 CHL00038 psbL photosystem II p 25.5 1E+02 0.0022 18.3 2.7 20 50-69 14-33 (38)
43 PF06814 Lung_7-TM_R: Lung sev 25.5 3.5E+02 0.0077 22.1 7.1 29 83-111 111-140 (295)
44 PRK10132 hypothetical protein; 23.4 77 0.0017 22.9 2.4 18 115-132 90-107 (108)
45 COG3086 RseC Positive regulato 23.1 2.3E+02 0.005 21.9 5.0 42 90-134 78-125 (150)
46 PF07219 HemY_N: HemY protein 21.9 1.2E+02 0.0027 21.2 3.2 20 39-58 3-22 (108)
47 PRK13664 hypothetical protein; 21.6 1.6E+02 0.0034 19.3 3.3 26 52-77 5-30 (62)
48 PF12732 YtxH: YtxH-like prote 21.4 1E+02 0.0022 20.2 2.5 19 113-131 3-21 (74)
49 PF11674 DUF3270: Protein of u 21.0 3.1E+02 0.0067 19.3 5.1 36 95-132 50-85 (90)
50 PF07301 DUF1453: Protein of u 20.8 3.9E+02 0.0085 20.5 5.9 67 62-135 11-80 (148)
51 PLN03223 Polycystin cation cha 20.6 6.8E+02 0.015 26.4 8.8 59 64-133 1297-1355(1634)
52 PF01307 Plant_vir_prot: Plant 20.5 97 0.0021 22.3 2.4 30 114-143 9-38 (104)
53 PF13268 DUF4059: Protein of u 20.4 2.9E+02 0.0063 18.8 6.8 40 54-93 13-52 (72)
54 PRK10452 multidrug efflux syst 20.4 3.5E+02 0.0076 19.7 5.9 67 63-133 8-82 (120)
No 1
>KOG3386 consensus Copper transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-36 Score=233.88 Aligned_cols=112 Identities=38% Similarity=0.608 Sum_probs=101.3
Q ss_pred CCCceeeEEEEcCCceeEEecCCccCChhHHHHHHHHHHHHHHHHHHHhhcccc-----c---CC------------Cch
Q 031963 24 HKKMKMHMTFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIAEWLTHSRLI-----K---EG------------TTN 83 (150)
Q Consensus 24 ~~~~~M~M~F~~~~~~~lLF~~W~~~t~~~y~~s~~~if~la~~~E~L~~~r~~-----k---~~------------s~~ 83 (150)
...|+|.|+|||++++++||++|+++|++.|+++|+++|++++++|+||+.|+. + +. +..
T Consensus 11 ~~~~~m~M~f~~~~~~~iLF~~W~~~s~~~~~ls~i~iflla~l~E~Lk~~r~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 90 (155)
T KOG3386|consen 11 GQTMMMMMFFHFKTIETILFSSWHITSAGGMALSCIAIFLLAVLYEALKFGREKLFRWQQLRQPTGHGHEIPLSGPSKLL 90 (155)
T ss_pred cCCCceEEEEecCceeEEEEcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccccCcchhh
Confidence 447899999999999999999999999999999999999999999999998862 1 10 111
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHhhccccc
Q 031963 84 -VAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGFLLFGSMVF 135 (150)
Q Consensus 84 -~~~~l~~~ll~~~q~~lsYlLMLvvMTfN~~lf~aVilG~~iGy~iFg~~~~ 135 (150)
...|++|+++|.+|+++||+|||++||||+|+++||++|+++||++|+.+..
T Consensus 91 ~~~~h~~qt~l~~~Q~~~sY~LMLifMtfN~~l~Lavv~Ga~~G~flF~~~~~ 143 (155)
T KOG3386|consen 91 NSASHLIQTLLYVVQLGFSYLLMLIFMTFNGYLFLAVVLGAGVGYFLFGSLTF 143 (155)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhheeeeccc
Confidence 5689999999999999999999999999999999999999999999999875
No 2
>PF04145 Ctr: Ctr copper transporter family; InterPro: IPR007274 The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation. A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionines probably coordinate copper during the process of metal transport.; GO: 0005375 copper ion transmembrane transporter activity, 0035434 copper ion transmembrane transport, 0016021 integral to membrane; PDB: 2LS4_A 2LS2_A 2LS3_A.
Probab=100.00 E-value=1.9e-34 Score=215.23 Aligned_cols=102 Identities=40% Similarity=0.701 Sum_probs=58.6
Q ss_pred eeEEEEcCC-ceeEEecCCccCChhHHHHHHHHHHHHHHHHHHHhhcccc------cC-----------C----------
Q 031963 29 MHMTFYWGN-EAEVLFSGWPGKRAGMYALALIFVFTLGVIAEWLTHSRLI------KE-----------G---------- 80 (150)
Q Consensus 29 M~M~F~~~~-~~~lLF~~W~~~t~~~y~~s~~~if~la~~~E~L~~~r~~------k~-----------~---------- 80 (150)
|+|+|||++ ++++||++|+++|.++|+++|+++|++|+++|+||.+|.. ++ +
T Consensus 1 M~M~F~~~~~~~~lLF~~W~~~s~~~~~~sci~~f~lav~~e~L~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T PF04145_consen 1 MSMYFHWGTIRDCLLFKSWKPSSAGAYVGSCIGVFLLAVLYEFLKALRRRLERRWARRRSRRASCSSSESRSRSDASSKS 80 (144)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHTTT-------------------------------------
T ss_pred CeeEEEcCCCccEEEeCCcEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcccCCCccccccc
Confidence 889999998 9999999999999999999999999999999999998752 00 0
Q ss_pred --------------CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHhh
Q 031963 81 --------------TTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGFLLF 130 (150)
Q Consensus 81 --------------s~~~~~~l~~~ll~~~q~~lsYlLMLvvMTfN~~lf~aVilG~~iGy~iF 130 (150)
+.....|++|+++|++|++++|+|||+|||||+|+|+||++|.++||++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~Y~LMLvvMTyN~~l~~aVv~G~~~G~~~F 144 (144)
T PF04145_consen 81 SPSPSSTSPRSSRRRWFWSQHLIRALLHFVQVLLGYLLMLVVMTYNVYLFIAVVLGAGLGYFLF 144 (144)
T ss_dssp ---------------------SHHHHHHHHHHHHHHHHHHHHHHTT--SSSHHHHHHTTSS-GG
T ss_pred ccccccccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhhheeHHHHHHHHHHHHHheeeC
Confidence 00235789999999999999999999999999999999999999999998
No 3
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=92.05 E-value=0.16 Score=32.76 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=25.1
Q ss_pred HhhhhHHHHHHHHHHHHhhHhhcccccc
Q 031963 109 MSFNAGIFLAAVAGQALGFLLFGSMVFD 136 (150)
Q Consensus 109 MTfN~~lf~aVilG~~iGy~iFg~~~~~ 136 (150)
|+.|+|+++.+++|..+|.+.-=+++.+
T Consensus 1 ~~~~~wlIIviVlgvIigNia~LK~sAk 28 (55)
T PF11446_consen 1 STWNPWLIIVIVLGVIIGNIAALKYSAK 28 (55)
T ss_pred CcchhhHHHHHHHHHHHhHHHHHHHhcc
Confidence 6899999999999999999998887654
No 4
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=66.87 E-value=5.6 Score=26.48 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhhHhhccc
Q 031963 114 GIFLAAVAGQALGFLLFGSM 133 (150)
Q Consensus 114 ~lf~aVilG~~iGy~iFg~~ 133 (150)
+++++.++|.++|+|+-.+.
T Consensus 2 ~iilali~G~~~Gff~ar~~ 21 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIARKY 21 (64)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999985543
No 5
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=66.06 E-value=78 Score=26.58 Aligned_cols=92 Identities=18% Similarity=0.371 Sum_probs=50.4
Q ss_pred eEEecCCccCChhHHHHHHHHHHHHHHHHHHHhhcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhH-H
Q 031963 40 EVLFSGWPGKRAGMYALALIFVFTLGVIAEWLTHSRLIKEGTTNVAARIIRTILHAIRVSLGYLLMLSLMSF---NAG-I 115 (150)
Q Consensus 40 ~lLF~~W~~~t~~~y~~s~~~if~la~~~E~L~~~r~~k~~s~~~~~~l~~~ll~~~q~~lsYlLMLvvMTf---N~~-l 115 (150)
.++|..|+..+..-+-..-+++..+++. +...|+.+.+..+..++..+.++..+-.+++|.+.-+..-+ |.+ .
T Consensus 91 v~~fgEW~~~~~~~~G~~Al~liiiGv~---lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~~~~~~~~ 167 (269)
T PF06800_consen 91 VLFFGEWTTTTQKIIGFLALVLIIIGVI---LTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAFHVSGWSA 167 (269)
T ss_pred HhhcCCCCCcchHHHHHHHHHHHHHHHH---HhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhcCCChhHh
Confidence 4789999976544332222223333433 34444433221111334444555555566777665544433 222 6
Q ss_pred HHHHHHHHHHhhHhhcccc
Q 031963 116 FLAAVAGQALGFLLFGSMV 134 (150)
Q Consensus 116 f~aVilG~~iGy~iFg~~~ 134 (150)
++-=-+|..+|-++|....
T Consensus 168 ~lPqaiGm~i~a~i~~~~~ 186 (269)
T PF06800_consen 168 FLPQAIGMLIGAFIFNLFS 186 (269)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 7777889999999888754
No 6
>PRK01844 hypothetical protein; Provisional
Probab=61.32 E-value=7 Score=26.59 Aligned_cols=18 Identities=44% Similarity=0.576 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhhHhhcc
Q 031963 115 IFLAAVAGQALGFLLFGS 132 (150)
Q Consensus 115 lf~aVilG~~iGy~iFg~ 132 (150)
++++.++|.++|+|+-.+
T Consensus 10 ~I~~li~G~~~Gff~ark 27 (72)
T PRK01844 10 GVVALVAGVALGFFIARK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 367888999999988544
No 7
>PRK00523 hypothetical protein; Provisional
Probab=58.87 E-value=8.3 Score=26.24 Aligned_cols=18 Identities=11% Similarity=0.266 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhHhhcc
Q 031963 115 IFLAAVAGQALGFLLFGS 132 (150)
Q Consensus 115 lf~aVilG~~iGy~iFg~ 132 (150)
++++.++|.++|+|+-.+
T Consensus 11 ~i~~li~G~~~Gffiark 28 (72)
T PRK00523 11 GIPLLIVGGIIGYFVSKK 28 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456788899999888444
No 8
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=57.58 E-value=17 Score=24.12 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh------hHHHHHHHHHHHHhhHhhccccccc
Q 031963 88 IIRTILHAIRVSLGYLLMLSLMSFN------AGIFLAAVAGQALGFLLFGSMVFDK 137 (150)
Q Consensus 88 l~~~ll~~~q~~lsYlLMLvvMTfN------~~lf~aVilG~~iGy~iFg~~~~~~ 137 (150)
+.|..+...-.. .++++..... .-..+|++++..++|++|.+.+.+.
T Consensus 6 l~Rl~lfv~~~~---vi~~v~~~~~~~~p~~~~~l~A~vis~~lS~~ll~~~R~~~ 58 (69)
T PF14012_consen 6 LARLGLFVVLFA---VIWLVGLLIGVEVPLLVAALLALVISMPLSYVLLRRLRDRA 58 (69)
T ss_pred HHHHHHHHHHHH---HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443 3455555555 6788999999999999999987654
No 9
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=56.92 E-value=69 Score=22.80 Aligned_cols=46 Identities=17% Similarity=0.105 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHhhHhhcccc
Q 031963 88 IIRTILHAIRVSLGYLLMLSLMS-------FNAGIFLAAVAGQALGFLLFGSMV 134 (150)
Q Consensus 88 l~~~ll~~~q~~lsYlLMLvvMT-------fN~~lf~aVilG~~iGy~iFg~~~ 134 (150)
+....+-.+++.+++.+...++. |-.|- ++.+....+|+++|+.+.
T Consensus 37 l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~-l~~v~~~~~~~l~f~E~l 89 (111)
T PRK15051 37 VLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLS-LNFVWVTLAAVKLWHEPV 89 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHH-HHHHHHHHHHHHHhCCCC
Confidence 44556666888888888887776 44444 667788889999998763
No 10
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.89 E-value=12 Score=25.42 Aligned_cols=21 Identities=33% Similarity=0.349 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHhhHhhccc
Q 031963 113 AGIFLAAVAGQALGFLLFGSM 133 (150)
Q Consensus 113 ~~lf~aVilG~~iGy~iFg~~ 133 (150)
.++.+|+++|...|||+-.+.
T Consensus 8 l~ivl~ll~G~~~G~fiark~ 28 (71)
T COG3763 8 LLIVLALLAGLIGGFFIARKQ 28 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999998887664
No 11
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.63 E-value=9.6 Score=26.08 Aligned_cols=23 Identities=30% Similarity=0.688 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHhhHhhccccc
Q 031963 112 NAGIFLAAVAGQALGFLLFGSMVF 135 (150)
Q Consensus 112 N~~lf~aVilG~~iGy~iFg~~~~ 135 (150)
..++|+.|++|.++||.+ +++.+
T Consensus 7 tFg~Fllvi~gMsiG~I~-krk~I 29 (77)
T COG2991 7 TFGIFLLVIAGMSIGYIF-KRKSI 29 (77)
T ss_pred HHHHHHHHHHHHhHhhhe-ecccc
Confidence 357899999999999964 44444
No 12
>PF09578 Spore_YabQ: Spore cortex protein YabQ (Spore_YabQ); InterPro: IPR019074 This protein is predicted to span the membrane several times. It is only found in genomes of species that perform sporulation, such as Bacillus subtilis, Clostridium tetani, and other members of the Firmicutes (low-GC Gram-positive bacteria). Mutation of this sigmaE-dependent gene blocks development of the spore cortex. The length of the C-terminal region, which includes some hydrophobic regions, is variable.
Probab=46.14 E-value=89 Score=20.95 Aligned_cols=66 Identities=18% Similarity=0.218 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHhhHhhc
Q 031963 62 FTLGVIAEWLTHSRLIKEGTTNVAARIIRTILHAIRVSLGYLLMLSLMSFN-----AGIFLAAVAGQALGFLLFG 131 (150)
Q Consensus 62 f~la~~~E~L~~~r~~k~~s~~~~~~l~~~ll~~~q~~lsYlLMLvvMTfN-----~~lf~aVilG~~iGy~iFg 131 (150)
+.+++++..++..|...|.+ +....+.+.+...++..+-+... ...| .++++++++|..+=+..++
T Consensus 9 ~~lg~~yD~~r~~r~~~~~~-~~~~~i~DllfWl~~~~~~F~~l---~~~N~G~iR~Y~~lg~~~G~~lY~~~ls 79 (80)
T PF09578_consen 9 IILGFLYDLYRVFRRVFRHS-RWLTGIEDLLFWLLAALIVFYFL---YWTNYGEIRFYIFLGILLGMILYFRLLS 79 (80)
T ss_pred HHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHH---HHccceeeeHHHHHHHHHHHHHHHHHhc
Confidence 57899999999998865432 33445555555555544333322 2344 4588888888888666654
No 13
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.50 E-value=67 Score=23.70 Aligned_cols=54 Identities=20% Similarity=0.154 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHhhcccccccCCC
Q 031963 85 AARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGFLLFGSMVFDKTEF 140 (150)
Q Consensus 85 ~~~l~~~ll~~~q~~lsYlLMLvvMTfN~~lf~aVilG~~iGy~iFg~~~~~~~~~ 140 (150)
...++..++- -+.++|+|==.+=|=.+++++-.++|.+.|.+.--|..-.++++
T Consensus 49 ssefIsGilV--Ga~iG~llD~~agTsPwglIv~lllGf~AG~lnv~Rsag~va~~ 102 (116)
T COG5336 49 SSEFISGILV--GAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNVLRSAGKVAEQ 102 (116)
T ss_pred HHHHHHHHHH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3455555543 45788888888999999999999999999999988876555554
No 14
>PRK01100 putative accessory gene regulator protein; Provisional
Probab=42.24 E-value=1.6e+02 Score=23.39 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHHH--------HhhHhhcccccccCCCCCCCCC
Q 031963 111 FNAGIFLAAVAGQA--------LGFLLFGSMVFDKTEFPPYEKP 146 (150)
Q Consensus 111 fN~~lf~aVilG~~--------iGy~iFg~~~~~~~~~~~~~~~ 146 (150)
++-.+-.++++|.. +||-+++|+. .+.|.+|++
T Consensus 168 ~~~~~~~~I~lGi~~q~~tllPi~~k~~~~~~---~~~~~~~~~ 208 (210)
T PRK01100 168 PFAEMKTLIMVGSLFQVISINPITYKLLNRRY---KNYEKYERN 208 (210)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---ccHHHHHhc
Confidence 44455555566655 7888998864 234455543
No 15
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=41.77 E-value=24 Score=25.85 Aligned_cols=22 Identities=14% Similarity=0.073 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 031963 55 ALALIFVFTLGVIAEWLTHSRL 76 (150)
Q Consensus 55 ~~s~~~if~la~~~E~L~~~r~ 76 (150)
++.+|++|++.++.-++...|+
T Consensus 5 ~~iii~~i~l~~~~~~~~~rRR 26 (130)
T PF12273_consen 5 FAIIIVAILLFLFLFYCHNRRR 26 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444433333333
No 16
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.13 E-value=26 Score=26.56 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhhHhhc
Q 031963 114 GIFLAAVAGQALGFLLFG 131 (150)
Q Consensus 114 ~lf~aVilG~~iGy~iFg 131 (150)
+..++.|+|.+|||++-.
T Consensus 10 ~a~igLvvGi~IG~li~R 27 (138)
T COG3105 10 YALIGLVVGIIIGALIAR 27 (138)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356788888888888753
No 17
>PF15050 SCIMP: SCIMP protein
Probab=40.94 E-value=21 Score=26.75 Aligned_cols=19 Identities=37% Similarity=0.604 Sum_probs=12.3
Q ss_pred hhHHHHHH---HHHHHHhhHhh
Q 031963 112 NAGIFLAA---VAGQALGFLLF 130 (150)
Q Consensus 112 N~~lf~aV---ilG~~iGy~iF 130 (150)
|.||++|| +++.++|.++|
T Consensus 7 nFWiiLAVaII~vS~~lglIly 28 (133)
T PF15050_consen 7 NFWIILAVAIILVSVVLGLILY 28 (133)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 56666654 45667777777
No 18
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=40.40 E-value=83 Score=25.81 Aligned_cols=36 Identities=11% Similarity=0.123 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhHhhcccc
Q 031963 99 SLGYLLMLSLMSFNAGIFLAAVAGQALGFLLFGSMV 134 (150)
Q Consensus 99 ~lsYlLMLvvMTfN~~lf~aVilG~~iGy~iFg~~~ 134 (150)
.+..++-++.=+.=.|++++|.+|..+.-++|+++.
T Consensus 40 ~v~v~ig~l~~~~~~~~i~gi~~g~l~am~vl~rra 75 (224)
T PF13829_consen 40 AVFVLIGLLFGSWWYWLIIGILLGLLAAMIVLSRRA 75 (224)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555556789999999999999999975
No 19
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=39.87 E-value=22 Score=25.68 Aligned_cols=28 Identities=32% Similarity=0.612 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHh
Q 031963 86 ARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGFLL 129 (150)
Q Consensus 86 ~~l~~~ll~~~q~~lsYlLMLvvMTfN~~lf~aVilG~~iGy~i 129 (150)
.-=+.++|+.+|..++ |.|+|+.+||.-
T Consensus 63 sGEiESLLFaLQAAiG----------------AgiIgY~lG~~~ 90 (100)
T PRK02898 63 SGEIESLLFALQAALG----------------AGIIGYILGYYK 90 (100)
T ss_pred cchHHHHHHHHHHHHh----------------hhhhheeeeehh
Confidence 3457899999999987 677888888764
No 20
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=38.82 E-value=57 Score=30.72 Aligned_cols=36 Identities=19% Similarity=0.396 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHhhHhhc
Q 031963 96 IRVSLGYLLMLSLM-----SFNAGIFLAAVAGQALGFLLFG 131 (150)
Q Consensus 96 ~q~~lsYlLMLvvM-----TfN~~lf~aVilG~~iGy~iFg 131 (150)
+...++|++|+.++ +.|.++|..|++|...++.-=.
T Consensus 74 la~~v~yl~~~~~~~~~~~~~~~gvfgGIi~G~i~a~l~nk 114 (648)
T PRK10255 74 LAGAVGYFVLTKAMVTINPEINMGVLAGIITGLVGGAAYNR 114 (648)
T ss_pred HHHHHHHHHHHHHHHHHhhhhchhhhhhhHHHHHHHHHHHH
Confidence 44556777776654 4589999999999999875433
No 21
>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants [].
Probab=38.80 E-value=24 Score=20.58 Aligned_cols=13 Identities=31% Similarity=0.652 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHH
Q 031963 97 RVSLGYLLMLSLM 109 (150)
Q Consensus 97 q~~lsYlLMLvvM 109 (150)
.=.++|+||+++-
T Consensus 15 Dqgiay~Lm~~Al 27 (34)
T PF06376_consen 15 DQGIAYMLMLVAL 27 (34)
T ss_pred hHHHHHHHHHHHH
Confidence 3468899998763
No 22
>PF06612 DUF1146: Protein of unknown function (DUF1146); InterPro: IPR009526 Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes YwzB from Bacillus subtilis.
Probab=38.67 E-value=29 Score=21.57 Aligned_cols=13 Identities=15% Similarity=-0.002 Sum_probs=6.5
Q ss_pred HHHHHHHHhhccc
Q 031963 64 LGVIAEWLTHSRL 76 (150)
Q Consensus 64 la~~~E~L~~~r~ 76 (150)
+++.+-++...|.
T Consensus 4 I~la~~aLq~l~~ 16 (48)
T PF06612_consen 4 IALAFWALQSLRW 16 (48)
T ss_pred HHHHHHHHHhcCH
Confidence 4445555555543
No 23
>PRK11431 multidrug efflux system protein; Provisional
Probab=36.96 E-value=1.5e+02 Score=21.06 Aligned_cols=69 Identities=16% Similarity=0.174 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHhhHhhcccc
Q 031963 63 TLGVIAEWLTHSRLIKEGTTNVAARIIRTILHAIRVSLGYLLMLSLM-------SFNAGIFLAAVAGQALGFLLFGSMV 134 (150)
Q Consensus 63 ~la~~~E~L~~~r~~k~~s~~~~~~l~~~ll~~~q~~lsYlLMLvvM-------TfN~~lf~aVilG~~iGy~iFg~~~ 134 (150)
++|.+.|-.-..-..+.+ ...+...+++..+-+.++|.++-.++ .|-.|--+.++.-..+|.++|+.+.
T Consensus 7 ~~Ai~~Ev~~t~~Lk~s~---gf~~~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~ 82 (105)
T PRK11431 7 VIAGLLEVVWAVGLKYTH---GFSRLTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESA 82 (105)
T ss_pred HHHHHHHHHHHHHHHhhh---CCccHHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 567777877654332111 01244445666777778888876666 5777888888888899999998753
No 24
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=36.72 E-value=1.1e+02 Score=19.19 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhhhH----HHHHHHHHHHHhhH
Q 031963 98 VSLGYLLMLSLMSFNAG----IFLAAVAGQALGFL 128 (150)
Q Consensus 98 ~~lsYlLMLvvMTfN~~----lf~aVilG~~iGy~ 128 (150)
..++.++=++++++-.| +++.+++|..+|..
T Consensus 14 ~~~G~ila~l~l~~GF~~tl~i~~~~~iG~~iG~~ 48 (51)
T PF10031_consen 14 GLIGLILALLILTFGFWKTLFILLFAAIGYYIGKY 48 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777666 56667777777764
No 25
>TIGR02327 int_mem_ywzB conserved hypothetical integral membrane protein. Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the Firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes ywzB from Bacillus subtilis; Pfam model pfam06612 describes the same family as Protein of unknown function DUF1146.
Probab=36.61 E-value=32 Score=22.97 Aligned_cols=18 Identities=11% Similarity=0.355 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhhHhhcc
Q 031963 115 IFLAAVAGQALGFLLFGS 132 (150)
Q Consensus 115 lf~aVilG~~iGy~iFg~ 132 (150)
+++||.+|..++.|+.+-
T Consensus 40 vllaIalGylvs~FfL~~ 57 (68)
T TIGR02327 40 VLIAIALGYTVSHFFLEL 57 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456777888888777653
No 26
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=35.50 E-value=18 Score=22.47 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhhHhhccc
Q 031963 115 IFLAAVAGQALGFLLFGSM 133 (150)
Q Consensus 115 lf~aVilG~~iGy~iFg~~ 133 (150)
.+++.++|..+||.+.|.-
T Consensus 8 ~~~~l~iGlmIGY~viG~G 26 (47)
T PF11772_consen 8 AILALAIGLMIGYGVIGDG 26 (47)
T ss_pred HHHHHHHHHHeeeeeeCCC
Confidence 5678899999999988864
No 27
>PHA00024 IX minor coat protein
Probab=33.51 E-value=64 Score=18.71 Aligned_cols=24 Identities=29% Similarity=0.214 Sum_probs=18.3
Q ss_pred HhhhhHHHHHHHHHHHHhhHhhcc
Q 031963 109 MSFNAGIFLAAVAGQALGFLLFGS 132 (150)
Q Consensus 109 MTfN~~lf~aVilG~~iGy~iFg~ 132 (150)
|.+-++.|-|-++|.++||-+..-
T Consensus 2 ~~~l~~ffgA~ilG~~l~~~Il~F 25 (33)
T PHA00024 2 MSYLGYFFGAYILGWALFYGILVF 25 (33)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888899999999876543
No 28
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=33.35 E-value=3.4e+02 Score=27.42 Aligned_cols=78 Identities=21% Similarity=0.223 Sum_probs=43.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhcc-c-c-c-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH--HHHHH
Q 031963 50 RAGMYALALIFVFTLGVIAEWLTHSR-L-I-K-EGTTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLA--AVAGQ 123 (150)
Q Consensus 50 t~~~y~~s~~~if~la~~~E~L~~~r-~-~-k-~~s~~~~~~l~~~ll~~~q~~lsYlLMLvvMTfN~~lf~a--VilG~ 123 (150)
|.+..+++.+++++..++.+.++..- . + + .+-.+....++.+++..+-++++.++.|-..-+|..-+.+ ..+|.
T Consensus 832 tl~~ll~AllIliv~~~l~r~l~~lle~~l~~~~~l~~~~~~~i~~l~~y~I~~ig~l~~L~~lGI~~t~l~al~galGV 911 (1109)
T PRK10929 832 TLGSVLIAILVFIITTQLVRNLPALLELALLQHLDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALGV 911 (1109)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 34566666666555556666666531 1 1 1 1222334556666666666677777777777777654433 33444
Q ss_pred HHhh
Q 031963 124 ALGF 127 (150)
Q Consensus 124 ~iGy 127 (150)
++|+
T Consensus 912 gIGf 915 (1109)
T PRK10929 912 GLGF 915 (1109)
T ss_pred HHHH
Confidence 4443
No 29
>PRK13499 rhamnose-proton symporter; Provisional
Probab=32.73 E-value=3.3e+02 Score=23.62 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=24.8
Q ss_pred eEEecCCc---cCChhHHHHHHHHHHHHHHHHHHHhhccc
Q 031963 40 EVLFSGWP---GKRAGMYALALIFVFTLGVIAEWLTHSRL 76 (150)
Q Consensus 40 ~lLF~~W~---~~t~~~y~~s~~~if~la~~~E~L~~~r~ 76 (150)
.++|..|+ .++.+...+.-+++.++++..-+....|+
T Consensus 119 ~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k 158 (345)
T PRK13499 119 PIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLK 158 (345)
T ss_pred HHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 46788998 77777766655666677777766644443
No 30
>PRK11715 inner membrane protein; Provisional
Probab=32.53 E-value=2.1e+02 Score=25.67 Aligned_cols=61 Identities=31% Similarity=0.434 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHhhcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHH
Q 031963 51 AGMYALALIFVFTLGV-IAEWLTHSRLIKEGTTNVAARIIRTILHAIRVSLGYLLMLSL---MSFNAGIFLAAVA 121 (150)
Q Consensus 51 ~~~y~~s~~~if~la~-~~E~L~~~r~~k~~s~~~~~~l~~~ll~~~q~~lsYlLMLvv---MTfN~~lf~aVil 121 (150)
..+|.+-++++-++++ +.|.++..| .|.++-+|-++..++=|+|.|.. ..||..+.+|..+
T Consensus 303 A~KYgiLFI~LTF~~fFlfE~~~~~~----------iHpiQYlLVGlAl~lFYLLLLSlSEHigF~~AYliAa~a 367 (436)
T PRK11715 303 AVKYAILFIALTFAAFFLFELLKKLR----------IHPVQYLLVGLALVLFYLLLLSLSEHIGFTLAYLIAALA 367 (436)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcCce----------ecHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Confidence 4577776666555554 457776554 67888899999999999888876 5677766655443
No 31
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=31.81 E-value=1.8e+02 Score=22.93 Aligned_cols=27 Identities=7% Similarity=0.102 Sum_probs=20.0
Q ss_pred HHHhhhhHHHHHHHHHHHHhhHhhccc
Q 031963 107 SLMSFNAGIFLAAVAGQALGFLLFGSM 133 (150)
Q Consensus 107 vvMTfN~~lf~aVilG~~iGy~iFg~~ 133 (150)
-.-|.-.-+|+=++-|..|||-+--..
T Consensus 130 ~~nTiiT~~CiyiLyGlFIGYSIsfE~ 156 (173)
T PF11085_consen 130 DWNTIITTLCIYILYGLFIGYSISFEY 156 (173)
T ss_pred chhHHHHHHHHHHHHHHHhceeehhhh
Confidence 344555668899999999999875543
No 32
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=31.68 E-value=2.3e+02 Score=21.91 Aligned_cols=37 Identities=19% Similarity=0.371 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhH
Q 031963 90 RTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGFL 128 (150)
Q Consensus 90 ~~ll~~~q~~lsYlLMLvvMTfN~~lf~aVilG~~iGy~ 128 (150)
+.++-.+-.++..++.. ..++...++++++|.+.+..
T Consensus 10 ~~~~~~~~~~~~~~~~~--~~~~~~~~l~~l~~~~~~~~ 46 (199)
T PF10112_consen 10 RWILGVLIAAITFLVSF--FGFDHSFLLSLLIGAVAFAV 46 (199)
T ss_pred HHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHH
Confidence 34444333333333333 33444444455555554444
No 33
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=28.90 E-value=61 Score=20.48 Aligned_cols=29 Identities=3% Similarity=0.021 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhhHhhcccccccCCCCCCCCC
Q 031963 116 FLAAVAGQALGFLLFGSMVFDKTEFPPYEKP 146 (150)
Q Consensus 116 f~aVilG~~iGy~iFg~~~~~~~~~~~~~~~ 146 (150)
-+|+++|...-..++- .+|+.|+.|.|++
T Consensus 9 piSl~l~~~~l~~f~W--avk~GQfDDle~~ 37 (51)
T TIGR00847 9 PISLLLGGVGLVAFLW--SLKSGQYDDLKGA 37 (51)
T ss_pred HHHHHHHHHHHHHHHH--HHccCCCCCCccH
Confidence 4556665554444433 2577888887654
No 34
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=28.56 E-value=70 Score=19.60 Aligned_cols=29 Identities=14% Similarity=0.151 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhhHhhcccccccCCCCCCCCC
Q 031963 116 FLAAVAGQALGFLLFGSMVFDKTEFPPYEKP 146 (150)
Q Consensus 116 f~aVilG~~iGy~iFg~~~~~~~~~~~~~~~ 146 (150)
-+|+++|......++-. +|+.|+.|.|+.
T Consensus 8 p~sl~l~~~~l~~f~Wa--vk~GQfdD~e~~ 36 (45)
T PF03597_consen 8 PVSLILGLIALAAFLWA--VKSGQFDDLEGP 36 (45)
T ss_pred HHHHHHHHHHHHHHHHH--HccCCCCCCcch
Confidence 34555555444444332 577788777654
No 35
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=27.72 E-value=2.3e+02 Score=20.31 Aligned_cols=68 Identities=21% Similarity=0.191 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHhhHhhccc
Q 031963 63 TLGVIAEWLTHSRLIKEGTTNVAARIIRTILHAIRVSLGYLLMLSLM-------SFNAGIFLAAVAGQALGFLLFGSM 133 (150)
Q Consensus 63 ~la~~~E~L~~~r~~k~~s~~~~~~l~~~ll~~~q~~lsYlLMLvvM-------TfN~~lf~aVilG~~iGy~iFg~~ 133 (150)
++|.+.|-.-..-..+.+ ..++...++...+-+.++|.++-.++ .|-.|--+.++.-..+|.++|+..
T Consensus 13 ~~Ai~~Ev~~t~~Lk~s~---gf~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~ 87 (109)
T PRK10650 13 ALAIVLEIVANIFLKFSD---GFRRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQR 87 (109)
T ss_pred HHHHHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 567777877654332211 12344447777788888888887776 466666677777778888888865
No 36
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.60 E-value=69 Score=20.26 Aligned_cols=20 Identities=35% Similarity=0.409 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHhhHhhcc
Q 031963 113 AGIFLAAVAGQALGFLLFGS 132 (150)
Q Consensus 113 ~~lf~aVilG~~iGy~iFg~ 132 (150)
..++++.++|..+|.++...
T Consensus 22 l~il~~f~~G~llg~l~~~~ 41 (68)
T PF06305_consen 22 LLILIAFLLGALLGWLLSLP 41 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888776654
No 37
>COG0472 Rfe UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis, outer membrane]
Probab=27.18 E-value=1.1e+02 Score=26.01 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHHhhHhhcccccc
Q 031963 111 FNAGIFLAAVAGQALGFLLFGSMVFD 136 (150)
Q Consensus 111 fN~~lf~aVilG~~iGy~iFg~~~~~ 136 (150)
+...++.++++|+.+||+.|++...|
T Consensus 188 ~~~~~~~~al~ga~LGFL~~N~~PAk 213 (319)
T COG0472 188 GELALICAALAGACLGFLWFNFYPAK 213 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCChhh
Confidence 45558899999999999999987743
No 38
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=27.05 E-value=4.6e+02 Score=23.48 Aligned_cols=59 Identities=34% Similarity=0.459 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHhhcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHHHHHH
Q 031963 51 AGMYALALIFVFTLGV-IAEWLTHSRLIKEGTTNVAARIIRTILHAIRVSLGYLLMLSL---MSFNAGIFLAA 119 (150)
Q Consensus 51 ~~~y~~s~~~if~la~-~~E~L~~~r~~k~~s~~~~~~l~~~ll~~~q~~lsYlLMLvv---MTfN~~lf~aV 119 (150)
..+|.+-++++-++++ +.|.++..| .|.++-+|-++..++-|+|.|.. ..||..+.+|.
T Consensus 297 a~KYgiLFI~LTF~~fflfE~~~~~~----------iHpiQY~LVGlAl~lFYlLLLSlSEhi~F~~AYliAa 359 (430)
T PF06123_consen 297 AVKYGILFIGLTFLAFFLFELLSKLR----------IHPIQYLLVGLALVLFYLLLLSLSEHIGFNLAYLIAA 359 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCc----------ccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Confidence 4578776666655554 457776543 67788888899999988888775 56777665554
No 39
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=26.13 E-value=3.9e+02 Score=22.27 Aligned_cols=43 Identities=16% Similarity=0.290 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHhhH
Q 031963 86 ARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAA--VAGQALGFL 128 (150)
Q Consensus 86 ~~l~~~ll~~~q~~lsYlLMLvvMTfN~~lf~aV--ilG~~iGy~ 128 (150)
.+++..+...+-+.++.+.-|-..-.|..-++++ ++|.++|..
T Consensus 66 ~~~~~~~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G~~glaiG~a 110 (286)
T PRK10334 66 ADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLA 110 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444455556666655544 345555543
No 40
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=26.07 E-value=16 Score=25.89 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 031963 86 ARIIRTILHAIRVSLG 101 (150)
Q Consensus 86 ~~l~~~ll~~~q~~ls 101 (150)
.-=+.++|+.+|..++
T Consensus 63 sGEiESlLFaLQAaiG 78 (91)
T TIGR01165 63 SGEIESLLFALQAALG 78 (91)
T ss_pred cchHHHHHHHHHHHhh
Confidence 3457899999999987
No 41
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=25.96 E-value=97 Score=18.52 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=15.2
Q ss_pred ChhHHHHHHHHHHHHHHHHH
Q 031963 50 RAGMYALALIFVFTLGVIAE 69 (150)
Q Consensus 50 t~~~y~~s~~~if~la~~~E 69 (150)
+....++.++.+|++|++..
T Consensus 15 NRTSLy~GlLlifvl~vLFs 34 (39)
T PRK00753 15 NRTSLYLGLLLVFVLGILFS 34 (39)
T ss_pred chhhHHHHHHHHHHHHHHHH
Confidence 34567778888899998864
No 42
>CHL00038 psbL photosystem II protein L
Probab=25.53 E-value=1e+02 Score=18.33 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=15.0
Q ss_pred ChhHHHHHHHHHHHHHHHHH
Q 031963 50 RAGMYALALIFVFTLGVIAE 69 (150)
Q Consensus 50 t~~~y~~s~~~if~la~~~E 69 (150)
+....++.++.||++|++..
T Consensus 14 NRTSLy~GLLlifvl~vlfs 33 (38)
T CHL00038 14 NRTSLYWGLLLIFVLAVLFS 33 (38)
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 34567778888899998864
No 43
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=25.52 E-value=3.5e+02 Score=22.13 Aligned_cols=29 Identities=21% Similarity=0.418 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Q 031963 83 NVAARIIRTILHAIRVSLGYLLMLS-LMSF 111 (150)
Q Consensus 83 ~~~~~l~~~ll~~~q~~lsYlLMLv-vMTf 111 (150)
+....+...+++.++-++++++.|+ .|-|
T Consensus 111 ~~~~~~~~~i~~~~k~~~~~~llllis~Gy 140 (295)
T PF06814_consen 111 SEGWMIFAYIFSALKRTLSFFLLLLISLGY 140 (295)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 4455677888888888888877744 3433
No 44
>PRK10132 hypothetical protein; Provisional
Probab=23.36 E-value=77 Score=22.92 Aligned_cols=18 Identities=33% Similarity=0.218 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhhHhhcc
Q 031963 115 IFLAAVAGQALGFLLFGS 132 (150)
Q Consensus 115 lf~aVilG~~iGy~iFg~ 132 (150)
+-++..+|+.+|.++..|
T Consensus 90 vgiaagvG~llG~Ll~RR 107 (108)
T PRK10132 90 VGTAAAVGIFIGALLSLR 107 (108)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 557778888899887654
No 45
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=23.08 E-value=2.3e+02 Score=21.87 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHhhHhhcccc
Q 031963 90 RTILHAIRVSLGYLLMLSLMSF------NAGIFLAAVAGQALGFLLFGSMV 134 (150)
Q Consensus 90 ~~ll~~~q~~lsYlLMLvvMTf------N~~lf~aVilG~~iGy~iFg~~~ 134 (150)
..+.|.+... .+++.++++ ..+.++.+++|.++||++-.++.
T Consensus 78 A~LvYi~PL~---~l~v~~~La~~L~~~e~~~~~~~~lg~~l~fl~~r~ys 125 (150)
T COG3086 78 ALLVYIFPLV---GLFLGAILAQYLFFSELIVIFGAFLGLALGFLLARRYS 125 (150)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666655 334444442 35678889999999999887754
No 46
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=21.87 E-value=1.2e+02 Score=21.20 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=13.7
Q ss_pred eeEEecCCccCChhHHHHHH
Q 031963 39 AEVLFSGWPGKRAGMYALAL 58 (150)
Q Consensus 39 ~~lLF~~W~~~t~~~y~~s~ 58 (150)
+.|-+.+|.+++.-..++..
T Consensus 3 V~I~~~~~~ie~sl~~~~~~ 22 (108)
T PF07219_consen 3 VLISWGGYRIETSLWVALIL 22 (108)
T ss_pred EEEEECCEEEEeeHHHHHHH
Confidence 46788999999755444333
No 47
>PRK13664 hypothetical protein; Provisional
Probab=21.61 E-value=1.6e+02 Score=19.33 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccc
Q 031963 52 GMYALALIFVFTLGVIAEWLTHSRLI 77 (150)
Q Consensus 52 ~~y~~s~~~if~la~~~E~L~~~r~~ 77 (150)
..|...++.+++++++..++|.+|++
T Consensus 5 adyWWilill~lvG~i~N~iK~l~Rv 30 (62)
T PRK13664 5 AKYWWILVLVFLVGVLLNVIKDLKRV 30 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777888889999999999998875
No 48
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=21.44 E-value=1e+02 Score=20.22 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHhhHhhc
Q 031963 113 AGIFLAAVAGQALGFLLFG 131 (150)
Q Consensus 113 ~~lf~aVilG~~iGy~iFg 131 (150)
.++++..++|.++|+++=.
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP 21 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAP 21 (74)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 5788888999999987643
No 49
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=20.98 E-value=3.1e+02 Score=19.31 Aligned_cols=36 Identities=8% Similarity=0.046 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHhhcc
Q 031963 95 AIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGFLLFGS 132 (150)
Q Consensus 95 ~~q~~lsYlLMLvvMTfN~~lf~aVilG~~iGy~iFg~ 132 (150)
.+.+.++|+ +++|-.|.++-++..+|.++|-...-+
T Consensus 50 I~tvlfsFv--fLs~kl~t~~Af~~Ai~~Sl~~~~~~~ 85 (90)
T PF11674_consen 50 IFTVLFSFV--FLSLKLNTFWAFPLAILISLAITQLVR 85 (90)
T ss_pred HHHHHHHHH--HHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333445554 467777777666666666665554433
No 50
>PF07301 DUF1453: Protein of unknown function (DUF1453); InterPro: IPR009916 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. Members of this family seem to be found exclusively in the Order Bacillales.
Probab=20.83 E-value=3.9e+02 Score=20.46 Aligned_cols=67 Identities=18% Similarity=0.312 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHhhHhhccccc
Q 031963 62 FTLGVIAEWLTHSRLIKEGTTNVAARIIRTILHAIRVSLGYLLMLSLMSFN---AGIFLAAVAGQALGFLLFGSMVF 135 (150)
Q Consensus 62 f~la~~~E~L~~~r~~k~~s~~~~~~l~~~ll~~~q~~lsYlLMLvvMTfN---~~lf~aVilG~~iGy~iFg~~~~ 135 (150)
.+++.+.-+.|.-+..||-+ .++++-..+. ...| .+|.+..-+. .++..|+++|...++.+....++
T Consensus 11 i~m~~~vi~~R~ka~~rP~~---~kkIIlPplf---mstG-~lmf~~P~~~~~~~~~l~A~~~G~lFs~~Li~ts~f 80 (148)
T PF07301_consen 11 IVMALLVIFIRMKASKRPVN---GKKIILPPLF---MSTG-FLMFVFPFFRPPWLEVLEAFLVGALFSYPLIKTSKF 80 (148)
T ss_pred HHHHHHHHHHHHHHccCCCC---cchHHHhHHH---HHHH-HHHHhCccccchHHHHHHHHHHHHHHHHHHHHhceE
Confidence 34444444444444445542 2334444443 2222 4676655443 35889999999999998877655
No 51
>PLN03223 Polycystin cation channel protein; Provisional
Probab=20.61 E-value=6.8e+02 Score=26.41 Aligned_cols=59 Identities=15% Similarity=0.220 Sum_probs=33.1
Q ss_pred HHHHHHHHhhcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHhhccc
Q 031963 64 LGVIAEWLTHSRLIKEGTTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGFLLFGSM 133 (150)
Q Consensus 64 la~~~E~L~~~r~~k~~s~~~~~~l~~~ll~~~q~~lsYlLMLvvMTfN~~lf~aVilG~~iGy~iFg~~ 133 (150)
+.++...+|.+|.++- ++....+.+++...+.=+++|++|+.++-+ .=+.+|+++||..
T Consensus 1297 IlIFLsiLKfLRLLRF--NPrL~vLt~TLrrAapDLa~F~IIF~IVF~---------AFAqLG~LLFGt~ 1355 (1634)
T PLN03223 1297 INIILLLGRILKLMDF--QPRLGVITRTLWLAGADLMHFFVIFGMVFV---------GYAFIGHVIFGNA 1355 (1634)
T ss_pred HHHHHHHHHHHHHhcc--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhccC
Confidence 3445555566555531 223456677777777777777777554421 1223567777754
No 52
>PF01307 Plant_vir_prot: Plant viral movement protein; InterPro: IPR001896 This family of membrane/coat proteins are found in a number of different ssRNA plant virus families that include Potexvirus, Hordeivirus and Carlavirus.
Probab=20.46 E-value=97 Score=22.27 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhHhhcccccccCCCCCC
Q 031963 114 GIFLAAVAGQALGFLLFGSMVFDKTEFPPY 143 (150)
Q Consensus 114 ~lf~aVilG~~iGy~iFg~~~~~~~~~~~~ 143 (150)
+.++++++|.+++-+++--.+-..+.++|+
T Consensus 9 k~~l~~aiG~~lal~i~~ltr~tlPhvGDn 38 (104)
T PF01307_consen 9 KSYLAAAIGVSLALIIFTLTRSTLPHVGDN 38 (104)
T ss_pred cchhHHHHHHHHHHHHHHhhcCCCCCCCCC
Confidence 456777777777777776655455555554
No 53
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=20.37 E-value=2.9e+02 Score=18.76 Aligned_cols=40 Identities=15% Similarity=0.090 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCCchhHHHHHHHHH
Q 031963 54 YALALIFVFTLGVIAEWLTHSRLIKEGTTNVAARIIRTIL 93 (150)
Q Consensus 54 y~~s~~~if~la~~~E~L~~~r~~k~~s~~~~~~l~~~ll 93 (150)
...+.+.+.+.+.+.-++|+.|........+..++-+.++
T Consensus 13 L~ls~i~V~~~~~~wi~~Ra~~~~DKT~~eRQa~LyD~lm 52 (72)
T PF13268_consen 13 LLLSSILVLLVSGIWILWRALRKKDKTAKERQAFLYDMLM 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 4556666777787777777777653333344455544433
No 54
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=20.36 E-value=3.5e+02 Score=19.72 Aligned_cols=67 Identities=15% Similarity=0.111 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhccccc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHhhHhhccc
Q 031963 63 TLGVIAEWLTHSRLIK-EGTTNVAARIIRTILHAIRVSLGYLLMLSLM-------SFNAGIFLAAVAGQALGFLLFGSM 133 (150)
Q Consensus 63 ~la~~~E~L~~~r~~k-~~s~~~~~~l~~~ll~~~q~~lsYlLMLvvM-------TfN~~lf~aVilG~~iGy~iFg~~ 133 (150)
++|.+.|..-..-... .+.+ +....++..+-+.++|.++-.++ -|-.|--+.++.-..+|.++|+..
T Consensus 8 ~~Ai~~Ev~~t~~LK~s~g~~----~~~~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~ 82 (120)
T PRK10452 8 ALAIATEITGTLSMKWASVSE----GNGGFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDES 82 (120)
T ss_pred HHHHHHHHHHHHHHHhhccCC----CcHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4666677665432221 1111 22334556666666666665555 244444455555666677777654
Done!