Query 031963
Match_columns 150
No_of_seqs 108 out of 705
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 12:19:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031963.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031963hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ls3_A High affinity copper up 98.8 4.1E-12 1.4E-16 71.4 0.0 28 86-113 1-28 (29)
2 2ls4_A High affinity copper up 97.9 1.7E-08 6E-13 55.1 0.0 24 111-134 1-24 (26)
3 2ls2_A High affinity copper up 96.9 5.5E-06 1.9E-10 45.1 0.0 25 49-73 2-26 (26)
4 2jwa_A Receptor tyrosine-prote 35.8 31 0.001 20.4 2.7 20 114-133 20-39 (44)
5 3arc_L Photosystem II reaction 26.1 75 0.0026 17.9 3.1 20 50-69 13-32 (37)
6 2vv5_A MSCS, small-conductance 25.0 2.5E+02 0.0084 21.9 7.3 83 45-127 22-109 (286)
7 2i68_A Protein EMRE; transmemb 24.1 1.9E+02 0.0065 20.4 7.2 41 92-132 34-81 (137)
8 1iij_A ERBB-2 receptor protein 21.7 40 0.0014 18.9 1.3 18 114-131 16-33 (35)
9 3cx5_C Cytochrome B-C1 complex 19.3 1.3E+02 0.0043 25.4 4.5 70 45-114 75-144 (385)
10 1vf5_F Protein PET M; photosyn 17.3 1.1E+02 0.0036 17.2 2.5 13 119-131 16-28 (35)
No 1
>2ls3_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=98.75 E-value=4.1e-12 Score=71.39 Aligned_cols=28 Identities=39% Similarity=0.831 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031963 86 ARIIRTILHAIRVSLGYLLMLSLMSFNA 113 (150)
Q Consensus 86 ~~l~~~ll~~~q~~lsYlLMLvvMTfN~ 113 (150)
+|++|+++|++|+++||+|||++||||+
T Consensus 1 ~h~~ra~l~~~q~~~~Y~LML~~MtyN~ 28 (29)
T 2ls3_A 1 KHLLQTVLHIIQVVISYFLMLIFMTYNK 28 (29)
Confidence 4789999999999999999999999996
No 2
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=97.86 E-value=1.7e-08 Score=55.10 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHhhHhhcccc
Q 031963 111 FNAGIFLAAVAGQALGFLLFGSMV 134 (150)
Q Consensus 111 fN~~lf~aVilG~~iGy~iFg~~~ 134 (150)
||+|+++||++|+++||++|++++
T Consensus 1 YNg~l~iavvlGa~~Gyf~F~~~~ 24 (26)
T 2ls4_A 1 YNGYLCIAVAAGAGTGYFLFSWKK 24 (26)
Confidence 899999999999999999999864
No 3
>2ls2_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=96.87 E-value=5.5e-06 Score=45.11 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=22.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhh
Q 031963 49 KRAGMYALALIFVFTLGVIAEWLTH 73 (150)
Q Consensus 49 ~t~~~y~~s~~~if~la~~~E~L~~ 73 (150)
+|.+.+++||+++|+++++||++|.
T Consensus 2 ~s~~~~v~Sci~ifll~~~YE~Lk~ 26 (26)
T 2ls2_A 2 NTAGEMAGAFVAVFLLAMFYEGLKX 26 (26)
Confidence 4678999999999999999999973
No 4
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=35.84 E-value=31 Score=20.38 Aligned_cols=20 Identities=35% Similarity=0.585 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhhHhhccc
Q 031963 114 GIFLAAVAGQALGFLLFGSM 133 (150)
Q Consensus 114 ~lf~aVilG~~iGy~iFg~~ 133 (150)
|+++.+++|.+++.++=.++
T Consensus 20 Gvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 20 GILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhheehhh
Confidence 46778888888877665443
No 5
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=26.08 E-value=75 Score=17.94 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=15.6
Q ss_pred ChhHHHHHHHHHHHHHHHHH
Q 031963 50 RAGMYALALIFVFTLGVIAE 69 (150)
Q Consensus 50 t~~~y~~s~~~if~la~~~E 69 (150)
+....++.++.||++|++..
T Consensus 13 NRTSLy~GLLlifvlavlFs 32 (37)
T 3arc_L 13 NRTSLYLGLLLILVLALLFS 32 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhh
Confidence 45677788888899998864
No 6
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=25.02 E-value=2.5e+02 Score=21.91 Aligned_cols=83 Identities=13% Similarity=0.156 Sum_probs=36.1
Q ss_pred CCccCChhHHHHHHHHHHHHHHHHHHHhhc-cc-c-cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH--HHHHH
Q 031963 45 GWPGKRAGMYALALIFVFTLGVIAEWLTHS-RL-I-KEGTTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAG--IFLAA 119 (150)
Q Consensus 45 ~W~~~t~~~y~~s~~~if~la~~~E~L~~~-r~-~-k~~s~~~~~~l~~~ll~~~q~~lsYlLMLvvMTfN~~--lf~aV 119 (150)
.|-.+.....+.+++.+++.-++.+.++.. ++ . |.+......++++.++..+-+.++.++.|...-.|.. +..+-
T Consensus 22 ~~~~~~~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g 101 (286)
T 2vv5_A 22 ALLLSYAVNIVAALAIIIVGLIIARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLG 101 (286)
T ss_dssp ---CGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 343444445555555544444445555432 21 1 1122223344455555555555554555554445443 33333
Q ss_pred HHHHHHhh
Q 031963 120 VAGQALGF 127 (150)
Q Consensus 120 ilG~~iGy 127 (150)
++|.++|.
T Consensus 102 ~~g~aig~ 109 (286)
T 2vv5_A 102 AAGLVVGL 109 (286)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555554
No 7
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=24.15 E-value=1.9e+02 Score=20.36 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHhhHhhcc
Q 031963 92 ILHAIRVSLGYLLMLSLM-------SFNAGIFLAAVAGQALGFLLFGS 132 (150)
Q Consensus 92 ll~~~q~~lsYlLMLvvM-------TfN~~lf~aVilG~~iGy~iFg~ 132 (150)
++-.+-..++|++...++ .|..|..+..++...+|.++|+.
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE 81 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQ 81 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334444444554444444 23333444455555555555544
No 8
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=21.68 E-value=40 Score=18.94 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhhHhhc
Q 031963 114 GIFLAAVAGQALGFLLFG 131 (150)
Q Consensus 114 ~lf~aVilG~~iGy~iFg 131 (150)
++++.+++|.++|.++=.
T Consensus 16 glll~vii~l~~~~~iRR 33 (35)
T 1iij_A 16 GVLLFLILVVVVGILIKR 33 (35)
T ss_dssp HHHHHHHHTTTTTHHHHH
T ss_pred HHHHHHHHHHHhheEEee
Confidence 478888888888877643
No 9
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=19.25 E-value=1.3e+02 Score=25.37 Aligned_cols=70 Identities=19% Similarity=0.132 Sum_probs=47.7
Q ss_pred CCccCChhHHHHHHHHHHHHHHHHHHHhhcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 031963 45 GWPGKRAGMYALALIFVFTLGVIAEWLTHSRLIKEGTTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAG 114 (150)
Q Consensus 45 ~W~~~t~~~y~~s~~~if~la~~~E~L~~~r~~k~~s~~~~~~l~~~ll~~~q~~lsYlLMLvvMTfN~~ 114 (150)
+|-+++--....+.+++.+..=..|++......||.+..|..-++-.++-....+.||.|==--|+|-+.
T Consensus 75 GwliR~~H~~gAs~ffi~iylHi~Rglyygsy~~Pr~~~W~~Gv~l~ll~m~~aF~GYvLPwgQmS~Wga 144 (385)
T 3cx5_C 75 GYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGA 144 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHCBHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeeecHHHHHHHHHHHHHhhhccCCcchhHHH
Confidence 5555555556666666555555556665555556666667777788888888899999987777777654
No 10
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=17.28 E-value=1.1e+02 Score=17.17 Aligned_cols=13 Identities=38% Similarity=0.600 Sum_probs=10.3
Q ss_pred HHHHHHHhhHhhc
Q 031963 119 AVAGQALGFLLFG 131 (150)
Q Consensus 119 VilG~~iGy~iFg 131 (150)
+++|.++|+.+..
T Consensus 16 vLvGla~Gf~LLk 28 (35)
T 1vf5_F 16 IFVGWGLGVLLLK 28 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhe
Confidence 4459999998875
Done!