Query 031963
Match_columns 150
No_of_seqs 108 out of 705
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 12:19:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031963.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031963hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 30.3 27 0.002 18.3 3.1 21 50-70 13-33 (37)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 20.4 22 0.0016 17.7 1.4 12 57-68 12-23 (30)
3 d1vtxa_ g.3.6.2 (A:) Atracotox 19.6 17 0.0013 19.6 0.9 7 144-150 9-15 (42)
4 d2r6gf1 e.70.1.1 (F:13-260) Ma 18.6 76 0.0055 23.1 4.8 45 90-134 5-49 (248)
5 d2vv5a3 f.34.1.1 (A:27-112) Me 15.0 1.1E+02 0.0081 17.7 8.1 45 83-127 37-83 (86)
6 d3cx5c2 f.21.1.2 (C:1-261) Mit 12.6 1.2E+02 0.0087 22.1 4.5 89 45-133 75-169 (261)
7 d2e74e1 f.23.24.1 (E:1-32) Pet 12.6 78 0.0057 15.6 2.3 13 115-127 10-22 (32)
8 d2axth1 f.23.33.1 (H:2-65) Pho 11.5 70 0.0051 18.7 2.2 29 42-71 20-48 (64)
9 d1la4a_ g.3.6.2 (A:) SGtx1 {Sp 10.7 22 0.0016 18.5 -0.3 7 144-150 10-16 (34)
10 d1q90b_ f.21.1.2 (B:) Cytochro 8.7 2.9E+02 0.021 19.2 5.3 90 45-134 76-171 (212)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=30.33 E-value=27 Score=18.34 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=15.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHH
Q 031963 50 RAGMYALALIFVFTLGVIAEW 70 (150)
Q Consensus 50 t~~~y~~s~~~if~la~~~E~ 70 (150)
+....++.++.+|++|++...
T Consensus 13 NrtsLy~GlLlifvl~vLFss 33 (37)
T d2axtl1 13 NRTSLYLGLLLILVLALLFSS 33 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHH
Confidence 456777788888999988643
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=20.43 E-value=22 Score=17.66 Aligned_cols=12 Identities=17% Similarity=0.442 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q 031963 57 ALIFVFTLGVIA 68 (150)
Q Consensus 57 s~~~if~la~~~ 68 (150)
+++++|++|++.
T Consensus 12 c~i~lfffaiff 23 (30)
T d2axtt1 12 CIIALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 344556666543
No 3
>d1vtxa_ g.3.6.2 (A:) Atracotoxin-hvI (versutoxin) {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=19.60 E-value=17 Score=19.62 Aligned_cols=7 Identities=29% Similarity=0.809 Sum_probs=5.6
Q ss_pred CCCCCCC
Q 031963 144 EKPSESC 150 (150)
Q Consensus 144 ~~~~~~C 150 (150)
+++||||
T Consensus 9 gktedcc 15 (42)
T d1vtxa_ 9 GKTEDCC 15 (42)
T ss_dssp CSSCCCS
T ss_pred cCccccc
Confidence 4788888
No 4
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=18.64 E-value=76 Score=23.07 Aligned_cols=45 Identities=16% Similarity=0.272 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHhhcccc
Q 031963 90 RTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGFLLFGSMV 134 (150)
Q Consensus 90 ~~ll~~~q~~lsYlLMLvvMTfN~~lf~aVilG~~iGy~iFg~~~ 134 (150)
..+|..+..+..|.+.++..-=+.++.+.+++-.+++.++|-+++
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vy~s~r 49 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANRK 49 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHheEEEEEccC
Confidence 467888899999988888877777776666666666666666554
No 5
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=15.00 E-value=1.1e+02 Score=17.69 Aligned_cols=45 Identities=11% Similarity=0.244 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHhh
Q 031963 83 NVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFL--AAVAGQALGF 127 (150)
Q Consensus 83 ~~~~~l~~~ll~~~q~~lsYlLMLvvMTfN~~lf~--aVilG~~iGy 127 (150)
+...+++..+.+.+-..++.+.-|-..-.|..-++ +=++|.++|+
T Consensus 37 ~~~~~~i~~~~~~~i~~i~~~~~L~~~Gi~~t~l~a~~G~~gvaiGf 83 (86)
T d2vv5a3 37 ATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGL 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 34556666666666666776777777777776443 3345666664
No 6
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.62 E-value=1.2e+02 Score=22.10 Aligned_cols=89 Identities=18% Similarity=0.193 Sum_probs=47.8
Q ss_pred CCccCChhHHHHHHHHHHHHHHHHHHHhhcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH----
Q 031963 45 GWPGKRAGMYALALIFVFTLGVIAEWLTHSRLIKEGTTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAV---- 120 (150)
Q Consensus 45 ~W~~~t~~~y~~s~~~if~la~~~E~L~~~r~~k~~s~~~~~~l~~~ll~~~q~~lsYlLMLvvMTfN~~lf~aVi---- 120 (150)
+|-++..-.+..+.+++.+..=..|.+-....++|....|..-++..++-......||.|=-=-|+|=+.-.+.=+
T Consensus 75 Gw~iR~~H~~ga~~~~~~~~lH~~r~~~~gsy~~pre~~W~~Gv~l~~l~~~~af~GY~Lpw~q~s~w~~~Vit~l~~~i 154 (261)
T d3cx5c2 75 GYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAI 154 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHCBHHHHHHHHHHHHGGGGS
T ss_pred ChhhhhcccccHHHHHHHHHHHHHHHHHhccccCccchhHHhhHHHHHHHHHHHHhhhhcCCCcchhhHHHHHHHHHHhc
Confidence 4555554555555554433333333333333334444456666777777777777888876666666555433322
Q ss_pred --HHHHHhhHhhccc
Q 031963 121 --AGQALGFLLFGSM 133 (150)
Q Consensus 121 --lG~~iGy~iFg~~ 133 (150)
+|-.+...++|..
T Consensus 155 P~vG~~lv~wl~GG~ 169 (261)
T d3cx5c2 155 PFVGNDIVSWLWGGF 169 (261)
T ss_dssp TTTHHHHHHHHHTSS
T ss_pred CcCchhhhhheeCCc
Confidence 2444555555543
No 7
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=12.56 E-value=78 Score=15.64 Aligned_cols=13 Identities=38% Similarity=0.728 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhh
Q 031963 115 IFLAAVAGQALGF 127 (150)
Q Consensus 115 lf~aVilG~~iGy 127 (150)
+|+|...|.++|-
T Consensus 10 vfialffgiavgi 22 (32)
T d2e74e1 10 VFIALFFGIAVGI 22 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 4566666777664
No 8
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=11.46 E-value=70 Score=18.71 Aligned_cols=29 Identities=28% Similarity=0.419 Sum_probs=19.2
Q ss_pred EecCCccCChhHHHHHHHHHHHHHHHHHHH
Q 031963 42 LFSGWPGKRAGMYALALIFVFTLGVIAEWL 71 (150)
Q Consensus 42 LF~~W~~~t~~~y~~s~~~if~la~~~E~L 71 (150)
.-++|-++-.-..+.+++++| +.++.|..
T Consensus 20 VaPGWGTTplMgv~m~Lf~vf-l~iiLeiY 48 (64)
T d2axth1 20 VAPGWGTTPLMAVFMGLFLVF-LLIILEIY 48 (64)
T ss_dssp CCSTTTTHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred ccCCcCccHHHHHHHHHHHHH-HHHHHHHh
Confidence 347888777667777777765 45555544
No 9
>d1la4a_ g.3.6.2 (A:) SGtx1 {Spider (Scodra griseipes) [TaxId: 118974]}
Probab=10.68 E-value=22 Score=18.52 Aligned_cols=7 Identities=14% Similarity=0.800 Sum_probs=5.3
Q ss_pred CCCCCCC
Q 031963 144 EKPSESC 150 (150)
Q Consensus 144 ~~~~~~C 150 (150)
.+++|||
T Consensus 10 ~~~sDCC 16 (34)
T d1la4a_ 10 KTTADCC 16 (34)
T ss_dssp SSGGGBC
T ss_pred ccchhhh
Confidence 4678888
No 10
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=8.68 E-value=2.9e+02 Score=19.23 Aligned_cols=90 Identities=13% Similarity=0.153 Sum_probs=52.3
Q ss_pred CCccCChhHHHHHHHHHHHHHHHHHHHhhcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH----
Q 031963 45 GWPGKRAGMYALALIFVFTLGVIAEWLTHSRLIKEGTTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAV---- 120 (150)
Q Consensus 45 ~W~~~t~~~y~~s~~~if~la~~~E~L~~~r~~k~~s~~~~~~l~~~ll~~~q~~lsYlLMLvvMTfN~~lf~aVi---- 120 (150)
+|-+++.-.+..+..++++..=..+.+-..+.++|..-.|..-++..++-......||.|=-=-|+|-+.-...-+
T Consensus 76 G~liR~lH~~gAs~~~~~~~lHm~r~~~~gsyk~pre~~W~~Gv~l~~l~m~~aftGY~Lpw~q~sywa~~V~~~l~~~i 155 (212)
T d1q90b_ 76 GWLIRSIHRWSASMMVLMMVLHVFRVYLTGGFKRPRELTWVTGVIMAVCTVSFGVTGYSLPWDQVGYWAVKIVTGVPDAI 155 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHGGGGS
T ss_pred chhhcccccccchHHHHHHHHHHHHHHHcCcccCcccceehHhHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHHH
Confidence 4444444444544444333333333322222334554556667777778888888899887777888766554444
Q ss_pred --HHHHHhhHhhcccc
Q 031963 121 --AGQALGFLLFGSMV 134 (150)
Q Consensus 121 --lG~~iGy~iFg~~~ 134 (150)
+|..+-..++|...
T Consensus 156 P~iG~~l~~~l~Gg~~ 171 (212)
T d1q90b_ 156 PGVGGFIVELLRGGVG 171 (212)
T ss_dssp TTHHHHHHHHHHTSSS
T ss_pred hhccHHHHHhcCCCcC
Confidence 46666677777644
Done!