BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031964
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z2W|A Chain A, Crystal Structure Of Mouse Vps29 Complexed With Mn2+
pdb|1Z2W|B Chain B, Crystal Structure Of Mouse Vps29 Complexed With Mn2+
pdb|1Z2X|A Chain A, Crystal Structure Of Mouse Vps29
pdb|1Z2X|B Chain B, Crystal Structure Of Mouse Vps29
pdb|3PSN|A Chain A, Crystal Structure Of Mouse Vps29 Complexed With Mn2+
pdb|3PSN|B Chain B, Crystal Structure Of Mouse Vps29 Complexed With Mn2+
pdb|3PSO|A Chain A, Crystal Structure Of Mouse Vps29 Complexed With Zn2+
pdb|3PSO|B Chain B, Crystal Structure Of Mouse Vps29 Complexed With Zn2+
Length = 192
Score = 187 bits (476), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 83/140 (59%), Positives = 113/140 (80%)
Query: 4 QEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAML 63
+E +DYLK + D+HI+RG++DE YPE K +T+GQFK+GL HGHQVIPWGD+ SLA+L
Sbjct: 53 KESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALL 112
Query: 64 QRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVV 123
QRQ DVDIL++GHTH+F A++HE INPGSATGA++++ ++ PSFVLMDI VV
Sbjct: 113 QRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVT 172
Query: 124 YVYELIDGEVKVDKIDFKKT 143
YVY+LI +VKV++I++KK+
Sbjct: 173 YVYQLIGDDVKVERIEYKKS 192
>pdb|1W24|A Chain A, Crystal Structure Of Human Vps29
Length = 182
Score = 187 bits (474), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 83/139 (59%), Positives = 112/139 (80%)
Query: 4 QEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAML 63
+E +DYLK + D+HI+RG++DE YPE K +T+GQFK+GL HGHQVIPWGD+ SLA+L
Sbjct: 43 KESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALL 102
Query: 64 QRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVV 123
QRQ DVDIL++GHTH+F A++HE INPGSATGA++++ ++ PSFVLMDI VV
Sbjct: 103 QRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVT 162
Query: 124 YVYELIDGEVKVDKIDFKK 142
YVY+LI +VKV++I++KK
Sbjct: 163 YVYQLIGDDVKVERIEYKK 181
>pdb|2R17|A Chain A, Functional Architecture Of The Retromer Cargo-Recognition
Complex
pdb|2R17|B Chain B, Functional Architecture Of The Retromer Cargo-Recognition
Complex
Length = 183
Score = 182 bits (463), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 82/139 (58%), Positives = 110/139 (79%)
Query: 4 QEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAML 63
+E +DYLK + D+HI+RG++DE YPE K +T+GQFK+GL HGHQVIPWGD SLA+L
Sbjct: 44 KESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDXASLALL 103
Query: 64 QRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVV 123
QRQ DVDIL++GHTH+F A++HE INPGSATGA++++ ++ PSFVL DI VV
Sbjct: 104 QRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLXDIQASTVVT 163
Query: 124 YVYELIDGEVKVDKIDFKK 142
YVY+LI +VKV++I++KK
Sbjct: 164 YVYQLIGDDVKVERIEYKK 182
>pdb|2A22|A Chain A, Structure Of Vacuolar Protein Sorting 29 From
Cryptosporidium Parvum
pdb|2A22|B Chain B, Structure Of Vacuolar Protein Sorting 29 From
Cryptosporidium Parvum
Length = 215
Score = 134 bits (338), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 95/148 (64%), Gaps = 9/148 (6%)
Query: 4 QEVHDYLKIICPDLHIIRGEYDE---------ETRYPETKTLTIGQFKLGLCHGHQVIPW 54
QE + LK I +++I+ G+ D +PE + IG+FK+GL HG+QV+PW
Sbjct: 68 QEYVEMLKNITKNVYIVSGDLDSAIFNPDPESNGVFPEYVVVQIGEFKIGLMHGNQVLPW 127
Query: 55 GDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLM 114
D SL QR+LD DILVTGHTH+ ++ G + +NPG+ATGAFS++T D PSF+LM
Sbjct: 128 DDPGSLEQWQRRLDCDILVTGHTHKLRVFEKNGKLFLNPGTATGAFSALTPDAPPSFMLM 187
Query: 115 DIDGLRVVVYVYELIDGEVKVDKIDFKK 142
+ G +VV+YVY+L DG+ V +F K
Sbjct: 188 ALQGNKVVLYVYDLRDGKTNVAMSEFSK 215
>pdb|2KKN|A Chain A, Solution Nmr Structure Of Themotoga Maritima Protein
Tm1076: Northeast Structural Genomics Consortium Target
Vt57
Length = 178
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 25 DEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYK 84
D + P +K L + +G+CHG PW D L + + +++ GHTH+
Sbjct: 87 DVKEHLPFSKVLLVEGVTIGMCHGWGA-PWDLKDRLLKVFNE-KPQVILFGHTHEPEDTV 144
Query: 85 HEGGVVINPGS-ATGAFSSITYD 106
G +NPGS A G+++ + D
Sbjct: 145 KAGVRFLNPGSLAEGSYAVLELD 167
>pdb|3CK2|A Chain A, Crystal Structure Of Conserved Uncharacterized Protein
(Predicted Phosphoesterase Cog0622) From Streptococcus
Pneumoniae Tigr4
Length = 176
Score = 33.9 bits (76), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 38/87 (43%)
Query: 17 LHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGH 76
+ +++G D YPE +G K+ HGH + L ++ + I + GH
Sbjct: 54 IRVVKGNXDFYAGYPERLVTELGSTKIIQTHGHLFDINFNFQKLDYWAQEEEAAICLYGH 113
Query: 77 THQFTAYKHEGGVVINPGSATGAFSSI 103
H +A+ + +NPGS + +I
Sbjct: 114 LHVPSAWLEGKILFLNPGSISQPRGTI 140
>pdb|1SU1|A Chain A, Structural And Biochemical Characterization Of Yfce, A
Phosphoesterase From E. Coli
pdb|1SU1|B Chain B, Structural And Biochemical Characterization Of Yfce, A
Phosphoesterase From E. Coli
pdb|1SU1|C Chain C, Structural And Biochemical Characterization Of Yfce, A
Phosphoesterase From E. Coli
pdb|1SU1|D Chain D, Structural And Biochemical Characterization Of Yfce, A
Phosphoesterase From E. Coli
Length = 208
Score = 33.5 bits (75), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 21/126 (16%)
Query: 20 IRGEYDEET-----RYPET---KTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDI 71
+RG D E +P T + + + + +L L HGH P ++L L + D+
Sbjct: 94 VRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFLTHGHLFGP----ENLPALNQN---DV 146
Query: 72 LVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNP-SFVLMDIDGLRVVVYVYELID 130
LV GHTH A + NPGS SI NP S+ ++D D L V+ + I
Sbjct: 147 LVYGHTHLPVAEQRGEIFHFNPGSV-----SIPKGGNPASYGMLDNDVLSVIALNDQSII 201
Query: 131 GEVKVD 136
+V ++
Sbjct: 202 AQVAIN 207
>pdb|3QFM|A Chain A, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH
pdb|3QFM|B Chain B, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH
pdb|3QFN|A Chain A, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH IN COMPLEX
WITH INORGANIC PHOSPHATE
pdb|3QFN|B Chain B, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH IN COMPLEX
WITH INORGANIC PHOSPHATE
pdb|3QFO|A Chain A, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH IM COMPLEX
WITH AMP
pdb|3QFO|B Chain B, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH IM COMPLEX
WITH AMP
Length = 270
Score = 33.1 bits (74), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 11/110 (10%)
Query: 38 IGQFKLGLCH-------GHQVIPWGDLDSLAMLQRQLDVDILVTGHTH-QFTAYKHEGGV 89
G +G+ H G ++I G + L DI V GH H Q Y G +
Sbjct: 127 FGDLTVGISHHLPDKNWGRELIHTGKQEEFDRLVTHPPCDIAVYGHIHQQLLRYGTGGQL 186
Query: 90 VINPGSATGAF---SSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVD 136
++NPGS F + + D+ +++++ D +V + +D +V +
Sbjct: 187 IVNPGSIGQPFFLDAQLRKDLRAQYMILEFDDKGLVDMDFRRVDYDVAAE 236
>pdb|2AHD|A Chain A, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
pdb|2AHD|B Chain B, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
pdb|2AHD|C Chain C, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
pdb|2AHD|D Chain D, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
Length = 165
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 25 DEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYK 84
+EE + ++ I K + HGH L M + D+++ GHTH+ +
Sbjct: 75 NEENIIDDFISVEIDDLKFFITHGHH------QSVLEMAIKSGLYDVVIYGHTHERVFEE 128
Query: 85 HEGGVVINPGSATGAFSSI 103
+ +VINPG G + I
Sbjct: 129 VDDVLVINPGECCGYLTGI 147
>pdb|1S3L|A Chain A, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3L|B Chain B, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3M|A Chain A, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3M|B Chain B, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3N|A Chain A, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3N|B Chain B, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
Length = 190
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 25 DEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYK 84
+EE + ++ I K + HGH L M + D+++ GHTH+ +
Sbjct: 100 NEENIIDDFISVEIDDLKFFITHGHH------QSVLEMAIKSGLYDVVIYGHTHERVFEE 153
Query: 85 HEGGVVINPGSATGAFSSI 103
+ +VINPG G + I
Sbjct: 154 VDDVLVINPGECCGYLTGI 172
>pdb|3QFK|A Chain A, 2.05 Angstrom Crystal Structure Of Putative
5'-Nucleotidase From Staphylococcus Aureus In Complex
With Alpha-Ketoglutarate
Length = 527
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 68 DVDILVTGHTHQFTAYKHEGGVVINPGS 95
D+DI +TGH H+ A + + VI PG+
Sbjct: 239 DIDIFITGHQHRQIAERFKQTAVIQPGT 266
>pdb|2QR4|A Chain A, Crystal Structure Of Oligoendopeptidase-F From
Enterococcus Faecium
pdb|2QR4|B Chain B, Crystal Structure Of Oligoendopeptidase-F From
Enterococcus Faecium
Length = 587
Score = 29.3 bits (64), Expect = 0.86, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 89 VVINPGSATGAFSSITYDVNPSFVL 113
VV N G +GA+SS +YD NP +L
Sbjct: 331 VVENKGKRSGAYSSGSYDTNPYILL 355
>pdb|3NBX|X Chain X, Crystal Structure Of E. Coli Rava (Regulatory Atpase
Variant A) In Complex With Adp
Length = 500
Score = 28.5 bits (62), Expect = 1.4, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 54 WGDLDSLAMLQRQLDVDILVTGHTHQ 79
W D SL ++Q+Q+DV L+TGH Q
Sbjct: 287 WYDAQSLNLIQQQIDV--LMTGHAWQ 310
>pdb|2VHW|A Chain A, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|B Chain B, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|C Chain C, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|D Chain D, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|E Chain E, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|F Chain F, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHX|A Chain A, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|B Chain B, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|C Chain C, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|D Chain D, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|E Chain E, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|F Chain F, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHY|A Chain A, Crystal Structure Of Apo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2VHY|B Chain B, Crystal Structure Of Apo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2VHZ|A Chain A, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Closed Conformation
pdb|2VHZ|B Chain B, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Closed Conformation
Length = 377
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 11/63 (17%)
Query: 65 RQLDVDILVTGHTHQFTAYKHEG---------GVVINPGSATGAF--SSITYDVNPSFVL 113
RQLD + HT +AY+ EG G V+ PG+ +S+ + P VL
Sbjct: 205 RQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVL 264
Query: 114 MDI 116
+DI
Sbjct: 265 VDI 267
>pdb|2VOE|A Chain A, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|B Chain B, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|C Chain C, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|D Chain D, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|E Chain E, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|F Chain F, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOJ|A Chain A, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
pdb|2VOJ|C Chain C, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
pdb|2VOJ|E Chain E, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
Length = 371
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 11/63 (17%)
Query: 65 RQLDVDILVTGHTHQFTAYKHEG---------GVVINPGSATGAF--SSITYDVNPSFVL 113
RQLD + HT +AY+ EG G V+ PG+ +S+ + P VL
Sbjct: 205 RQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVL 264
Query: 114 MDI 116
+DI
Sbjct: 265 VDI 267
>pdb|2VHV|A Chain A, Crystal Structure Of The D270a Mutant Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis In Complex
With Nadh.
pdb|2VHV|B Chain B, Crystal Structure Of The D270a Mutant Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis In Complex
With Nadh
Length = 377
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 11/63 (17%)
Query: 65 RQLDVDILVTGHTHQFTAYKHEG---------GVVINPGSATGAF--SSITYDVNPSFVL 113
RQLD + HT +AY+ EG G V+ PG+ +S+ + P VL
Sbjct: 205 RQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVL 264
Query: 114 MDI 116
+DI
Sbjct: 265 VDI 267
>pdb|2WDC|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In Complex
With Glycerol
pdb|2WDD|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In Complex
With Sulfate
pdb|2WDE|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In Complex
With Thiosulfate
pdb|2WDF|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb
Length = 562
Score = 26.6 bits (57), Expect = 5.6, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 61 AMLQRQLDVDILVTGHTHQFTAYKHE-GGVVINPGSATG 98
A+ +R +D++++GHTH T G I GSA G
Sbjct: 271 ALAERIRGIDLILSGHTHDLTPRPWRVGKTWIVAGSAAG 309
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 105 YDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKTSTCHS 148
+DVN + +L D + LR VY+L D E+ + ++ + S+ +
Sbjct: 298 FDVNKANILGD-NFLRSAYIVYDLDDNEISIAQVKYTSASSTSA 340
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 25.8 bits (55), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 102 SITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKTSTCHSAH 150
++ + N + DG V+ VYE +DGE KV F K + CH +
Sbjct: 255 NVAWGFNGLIASVGADG---VLAVYEEVDGEWKV----FAKRALCHGVY 296
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,843,099
Number of Sequences: 62578
Number of extensions: 196029
Number of successful extensions: 334
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 323
Number of HSP's gapped (non-prelim): 23
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)