BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031964
(150 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9STT2|VPS29_ARATH Vacuolar protein sorting-associated protein 29 OS=Arabidopsis
thaliana GN=VPS29 PE=2 SV=1
Length = 190
Score = 267 bits (682), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 126/149 (84%), Positives = 134/149 (89%)
Query: 1 MTFQEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSL 60
+ +E+HDYLK ICPDLHI+RGE+DE+ RYPE KTLTIGQFKLGLCHGHQVIPWGDLDSL
Sbjct: 41 LCIKEIHDYLKTICPDLHIVRGEFDEDARYPENKTLTIGQFKLGLCHGHQVIPWGDLDSL 100
Query: 61 AMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLR 120
AMLQRQL VDILVTGHTHQFTAYKHEGGVVINPGSATGA+SSI DVNPSFVLMDIDG R
Sbjct: 101 AMLQRQLGVDILVTGHTHQFTAYKHEGGVVINPGSATGAYSSINQDVNPSFVLMDIDGFR 160
Query: 121 VVVYVYELIDGEVKVDKIDFKKTSTCHSA 149
VVYVYELIDGEVKVDKI+FKK T S
Sbjct: 161 AVVYVYELIDGEVKVDKIEFKKPPTTSSG 189
>sp|Q54IF7|VPS29_DICDI Vacuolar protein sorting-associated protein 29 OS=Dictyostelium
discoideum GN=vps29 PE=3 SV=1
Length = 183
Score = 192 bits (488), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 84/142 (59%), Positives = 112/142 (78%)
Query: 1 MTFQEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSL 60
+ +E+HDY K++ D+HI+RG+ DE T YP+TK ++IGQFK GLCHGHQ++PWGD SL
Sbjct: 40 LVSKEIHDYFKVLTSDVHIVRGDLDENTSYPDTKIVSIGQFKFGLCHGHQIVPWGDRASL 99
Query: 61 AMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLR 120
A LQRQLDVD+L++GHTH ++ G + +NPGSATGAFS+I+ DV PSFVLMD+
Sbjct: 100 AALQRQLDVDVLISGHTHVLEVFESNGKLFVNPGSATGAFSNISNDVIPSFVLMDVQSNN 159
Query: 121 VVVYVYELIDGEVKVDKIDFKK 142
+ VY+Y+LIDG+VKV+KID K
Sbjct: 160 ITVYIYKLIDGQVKVEKIDHVK 181
>sp|Q7ZV68|VPS29_DANRE Vacuolar protein sorting-associated protein 29 OS=Danio rerio
GN=vps29 PE=2 SV=1
Length = 182
Score = 189 bits (481), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 84/140 (60%), Positives = 114/140 (81%)
Query: 4 QEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAML 63
+E +DYLK + D+HI+RG++DE YPE K +T+GQFK+GL HGHQVIPWGD+ SLA+L
Sbjct: 43 KESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALL 102
Query: 64 QRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVV 123
QRQLDVDIL++GHTH+F A+++E INPGSATGA+S++ ++ PSFVLMDI VV
Sbjct: 103 QRQLDVDILISGHTHKFEAFENENKFYINPGSATGAYSALESNITPSFVLMDIQASTVVT 162
Query: 124 YVYELIDGEVKVDKIDFKKT 143
YVY+LI +VKV++I++KK+
Sbjct: 163 YVYQLIGDDVKVERIEYKKS 182
>sp|Q5R9Z1|VPS29_PONAB Vacuolar protein sorting-associated protein 29 OS=Pongo abelii
GN=VPS29 PE=2 SV=1
Length = 182
Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 83/140 (59%), Positives = 113/140 (80%)
Query: 4 QEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAML 63
+E +DYLK + D+HI+RG++DE YPE K +T+GQFK+GL HGHQVIPWGD+ SLA+L
Sbjct: 43 KESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALL 102
Query: 64 QRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVV 123
QRQ DVDIL++GHTH+F A++HE INPGSATGA++++ ++ PSFVLMDI VV
Sbjct: 103 QRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALEANIIPSFVLMDIQASTVVT 162
Query: 124 YVYELIDGEVKVDKIDFKKT 143
YVY+LI +VKV++I++KK+
Sbjct: 163 YVYQLIGDDVKVERIEYKKS 182
>sp|Q3T0M0|VPS29_BOVIN Vacuolar protein sorting-associated protein 29 OS=Bos taurus
GN=VPS29 PE=2 SV=1
Length = 186
Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 83/140 (59%), Positives = 113/140 (80%)
Query: 4 QEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAML 63
+E +DYLK + D+HI+RG++DE YPE K +T+GQFK+GL HGHQVIPWGD+ SLA+L
Sbjct: 47 KESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALL 106
Query: 64 QRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVV 123
QRQ DVDIL++GHTH+F A++HE INPGSATGA++++ ++ PSFVLMDI VV
Sbjct: 107 QRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVT 166
Query: 124 YVYELIDGEVKVDKIDFKKT 143
YVY+LI +VKV++I++KK+
Sbjct: 167 YVYQLIGDDVKVERIEYKKS 186
>sp|Q9QZ88|VPS29_MOUSE Vacuolar protein sorting-associated protein 29 OS=Mus musculus
GN=Vps29 PE=1 SV=1
Length = 182
Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 83/140 (59%), Positives = 113/140 (80%)
Query: 4 QEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAML 63
+E +DYLK + D+HI+RG++DE YPE K +T+GQFK+GL HGHQVIPWGD+ SLA+L
Sbjct: 43 KESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALL 102
Query: 64 QRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVV 123
QRQ DVDIL++GHTH+F A++HE INPGSATGA++++ ++ PSFVLMDI VV
Sbjct: 103 QRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVT 162
Query: 124 YVYELIDGEVKVDKIDFKKT 143
YVY+LI +VKV++I++KK+
Sbjct: 163 YVYQLIGDDVKVERIEYKKS 182
>sp|B2RZ78|VPS29_RAT Vacuolar protein sorting-associated protein 29 OS=Rattus norvegicus
GN=Vps29 PE=1 SV=2
Length = 182
Score = 187 bits (476), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 83/140 (59%), Positives = 113/140 (80%)
Query: 4 QEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAML 63
+E +DYLK + D+HI+RG++DE YPE K +T+GQFK+GL HGHQVIPWGD+ SLA+L
Sbjct: 43 KESYDYLKTLAGDVHIVRGDFDESLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALL 102
Query: 64 QRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVV 123
QRQ DVDIL++GHTH+F A++HE INPGSATGA++++ ++ PSFVLMDI VV
Sbjct: 103 QRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVT 162
Query: 124 YVYELIDGEVKVDKIDFKKT 143
YVY+LI +VKV++I++KK+
Sbjct: 163 YVYQLIGDDVKVERIEYKKS 182
>sp|Q9UBQ0|VPS29_HUMAN Vacuolar protein sorting-associated protein 29 OS=Homo sapiens
GN=VPS29 PE=1 SV=1
Length = 182
Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 83/139 (59%), Positives = 112/139 (80%)
Query: 4 QEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAML 63
+E +DYLK + D+HI+RG++DE YPE K +T+GQFK+GL HGHQVIPWGD+ SLA+L
Sbjct: 43 KESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALL 102
Query: 64 QRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVV 123
QRQ DVDIL++GHTH+F A++HE INPGSATGA++++ ++ PSFVLMDI VV
Sbjct: 103 QRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVT 162
Query: 124 YVYELIDGEVKVDKIDFKK 142
YVY+LI +VKV++I++KK
Sbjct: 163 YVYQLIGDDVKVERIEYKK 181
>sp|Q6DEU3|VPS29_XENTR Vacuolar protein sorting-associated protein 29 OS=Xenopus
tropicalis GN=vps29 PE=2 SV=1
Length = 182
Score = 186 bits (472), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 83/140 (59%), Positives = 112/140 (80%)
Query: 4 QEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAML 63
+E DYLK + D+HI+RG++DE YPE K +T+GQFK+GL HGHQVIPWGD+ SLA+L
Sbjct: 43 KESFDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALL 102
Query: 64 QRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVV 123
QRQLDVDIL++GHT +F A++HE INPGSATGA++++ ++ PSFVLMDI VV
Sbjct: 103 QRQLDVDILISGHTQKFEAFEHENKFYINPGSATGAYNALENNIIPSFVLMDIQASTVVT 162
Query: 124 YVYELIDGEVKVDKIDFKKT 143
YVY+LI +VKV++I++KK+
Sbjct: 163 YVYQLIGDDVKVERIEYKKS 182
>sp|Q6GP62|VPS29_XENLA Vacuolar protein sorting-associated protein 29 OS=Xenopus laevis
GN=vps29 PE=2 SV=1
Length = 182
Score = 186 bits (472), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 83/140 (59%), Positives = 112/140 (80%)
Query: 4 QEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAML 63
+E DYLK + D+HI+RG++DE YPE K +T+GQFK+GL HGHQVIPWGD+ SLA+L
Sbjct: 43 KESFDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALL 102
Query: 64 QRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVV 123
QRQLDVDIL++GHT +F A++HE INPGSATGA++++ ++ PSFVLMDI VV
Sbjct: 103 QRQLDVDILISGHTQKFEAFEHENKFYINPGSATGAYNALENNIIPSFVLMDIQASTVVT 162
Query: 124 YVYELIDGEVKVDKIDFKKT 143
YVY+LI +VKV++I++KK+
Sbjct: 163 YVYQLIGDDVKVERIEYKKS 182
>sp|Q5ZIL2|VPS29_CHICK Vacuolar protein sorting-associated protein 29 OS=Gallus gallus
GN=VPS29 PE=2 SV=1
Length = 186
Score = 185 bits (469), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 81/140 (57%), Positives = 112/140 (80%)
Query: 4 QEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAML 63
++ +DYLK + D+H++RG++DE YPE K +T+GQFK+GL HGHQVIPWGD+ SLA+L
Sbjct: 47 KDTYDYLKTLAGDVHVVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALL 106
Query: 64 QRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVV 123
QRQ DVDIL++GHTH+F A++HE INPGSATGA+ ++ ++ PSFVLMDI VV
Sbjct: 107 QRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYHALENNIIPSFVLMDIQASTVVT 166
Query: 124 YVYELIDGEVKVDKIDFKKT 143
YVY+LI +VKV++I++KK+
Sbjct: 167 YVYQLIGDDVKVERIEYKKS 186
>sp|Q9UTI5|VPS29_SCHPO Vacuolar protein sorting-associated protein 29
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps29 PE=3 SV=1
Length = 187
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 101/146 (69%), Gaps = 4/146 (2%)
Query: 1 MTFQEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSL 60
+T V++YLK +C DL +++G +D ++ P +T+G FK+G +GH V+P ++L
Sbjct: 40 LTSTSVYEYLKHVCSDLKLVKGAFDISSKAPIAGKITLGSFKIGYTNGHLVVPQDSPEAL 99
Query: 61 AMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGA--FSSITYD--VNPSFVLMDI 116
++L R++D DIL+ G TH+F AY+ +G +NPGSATGA S++ D + PSFVLMD+
Sbjct: 100 SILAREMDADILLFGGTHKFAAYELDGCFFVNPGSATGAPNVSAVEDDEKIVPSFVLMDV 159
Query: 117 DGLRVVVYVYELIDGEVKVDKIDFKK 142
G +++YVY + DGEV+V+K+ ++K
Sbjct: 160 QGAVLILYVYRIFDGEVRVEKMQYRK 185
>sp|P38759|VPS29_YEAST Vacuolar protein sorting-associated protein 29 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS29 PE=1
SV=1
Length = 282
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 66/127 (51%), Gaps = 23/127 (18%)
Query: 7 HDYLKI---ICPDLHIIRGEYD-------------EETR----YPETKTLTIGQFKLGLC 46
+D+LK I ++ I+RGE+D + +R P + G K+G C
Sbjct: 45 YDFLKFVNQISNNITIVRGEFDNGHLPSTKKDKASDNSRPMEEIPMNSIIRQGALKIGCC 104
Query: 47 HGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSS---I 103
G+ V+P D SL L RQLDVDIL+ G TH AY EG +NPGS TGAF++ I
Sbjct: 105 SGYTVVPKNDPLSLLALARQLDVDILLWGGTHNVEAYTLEGKFFVNPGSCTGAFNTDWPI 164
Query: 104 TYDVNPS 110
+DV S
Sbjct: 165 VFDVEDS 171
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 101 SSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKK 142
S I +PSF L+DI G +Y+Y ++GEVKVDK+ ++K
Sbjct: 240 SDINGSNSPSFCLLDIQGNTCTLYIYLYVNGEVKVDKVVYEK 281
>sp|O27802|Y1774_METTH Putative metallophosphoesterase MTH_1774 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1774 PE=3 SV=1
Length = 172
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 31 PETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVV 90
P ++ I F++GL HG +V P GD L L +L D+L++GHTHQ + E V+
Sbjct: 69 PRSRLFEIESFRVGLIHG-EVYPRGDTQQLRYLGLELGADVLISGHTHQPFIRELEDMVL 127
Query: 91 INPGSATGAFSSITYDVNPSFVLMDIDG 118
+NPGS T + +PS +++ IDG
Sbjct: 128 LNPGSPT-----VPRLTDPSVMVLRIDG 150
>sp|Q58040|Y623_METJA Putative metallophosphoesterase MJ0623 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0623 PE=3 SV=1
Length = 192
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 1 MTFQEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSL 60
+T +E+ D LK + + ++G D P + L I K+G+ HG V P GD L
Sbjct: 71 VTDKEILDSLKDLA-KVVAVKGNMDY-LNLPRKEILEINDIKIGVIHGDVVYPRGDRLKL 128
Query: 61 AMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSAT 97
+L +++ VD+L++GHTH +++NPGS T
Sbjct: 129 RLLGKEMGVDVLISGHTHTPFIDDCRDILLLNPGSPT 165
>sp|P47449|Y207_MYCGE Putative metallophosphoesterase MG207 OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=MG207 PE=3
SV=2
Length = 163
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 32 ETKTLTIGQFKLGLCHGHQVIPWGDLDS----LAMLQRQLDVDILVTGHTHQFTAYKHEG 87
E + +GQ L HGHQ P +L L + +Q D+L+ GH+H K
Sbjct: 60 EIEIFQLGQINFVLMHGHQA-PRDNLKKWYQLLVLKAQQYPCDVLIFGHSHIEYTNKINM 118
Query: 88 GVVINPGS 95
+INPGS
Sbjct: 119 IQLINPGS 126
>sp|P67095|YFCE_ECOLI Phosphodiesterase YfcE OS=Escherichia coli (strain K12) GN=yfcE
PE=1 SV=1
Length = 184
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 21/126 (16%)
Query: 20 IRGEYDEET-----RYPET---KTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDI 71
+RG D E +P T + + + + +L L HGH P ++L L + D+
Sbjct: 70 VRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFLTHGHLFGP----ENLPALNQN---DV 122
Query: 72 LVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNP-SFVLMDIDGLRVVVYVYELID 130
LV GHTH A + NPGS SI NP S+ ++D D L V+ + I
Sbjct: 123 LVYGHTHLPVAEQRGEIFHFNPGSV-----SIPKGGNPASYGMLDNDVLSVIALNDQSII 177
Query: 131 GEVKVD 136
+V ++
Sbjct: 178 AQVAIN 183
>sp|P67096|YFCE_ECOL6 Phosphodiesterase YfcE OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=yfcE PE=3 SV=1
Length = 184
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 21/126 (16%)
Query: 20 IRGEYDEET-----RYPET---KTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDI 71
+RG D E +P T + + + + +L L HGH P ++L L + D+
Sbjct: 70 VRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFLTHGHLFGP----ENLPALNQN---DV 122
Query: 72 LVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNP-SFVLMDIDGLRVVVYVYELID 130
LV GHTH A + NPGS SI NP S+ ++D D L V+ + I
Sbjct: 123 LVYGHTHLPVAEQRGEIFHFNPGSV-----SIPKGGNPASYGMLDNDVLSVIALNDQSII 177
Query: 131 GEVKVD 136
+V ++
Sbjct: 178 AQVAIN 183
>sp|P67097|YFCE_ECO57 Phosphodiesterase YfcE OS=Escherichia coli O157:H7 GN=yfcE PE=3
SV=1
Length = 184
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 21/126 (16%)
Query: 20 IRGEYDEET-----RYPET---KTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDI 71
+RG D E +P T + + + + +L L HGH P ++L L + D+
Sbjct: 70 VRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFLTHGHLFGP----ENLPALNQN---DV 122
Query: 72 LVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNP-SFVLMDIDGLRVVVYVYELID 130
LV GHTH A + NPGS SI NP S+ ++D D L V+ + I
Sbjct: 123 LVYGHTHLPVAEQRGEIFHFNPGSV-----SIPKGGNPASYGMLDNDVLSVIALNDQSII 177
Query: 131 GEVKVD 136
+V ++
Sbjct: 178 AQVAIN 183
>sp|P94559|YSNB_BACSU Putative metallophosphoesterase YsnB OS=Bacillus subtilis (strain
168) GN=ysnB PE=3 SV=2
Length = 169
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 19 IIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTH 78
+++G D + + LT G K+ + HGH L ++ +L D++ GH+H
Sbjct: 50 VVKGNCDFAGDFKDELLLTAGSRKILVTHGHLHGIKQTLLNVYYRAEELGADVICFGHSH 109
Query: 79 QFTAYKHEGGVVINPGS 95
+ G ++INPGS
Sbjct: 110 IAGSEVLRGKLMINPGS 126
>sp|Q94T68|CYB_LAMGT Cytochrome b OS=Lampris guttatus GN=mt-cyb PE=3 SV=1
Length = 380
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 13 ICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQ----VIPWGDLD 58
IC LHI RG Y Y ET TIG LGL V+PWG +
Sbjct: 92 ICIYLHIARGLYYGSYLYKETW--TIGVVLLGLVMATAFVGYVLPWGQMS 139
>sp|Q58346|P936_METJA Phosphodiesterase MJ0936 OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=MJ0936 PE=1 SV=1
Length = 166
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 25 DEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYK 84
+EE + ++ I K + HGH L M + D+++ GHTH+ +
Sbjct: 75 NEENIIDDFISVEIDDLKFFITHGHH------QSVLEMAIKSGLYDVVIYGHTHERVFEE 128
Query: 85 HEGGVVINPGSATGAFSSI 103
+ +VINPG G + I
Sbjct: 129 VDDVLVINPGECCGYLTGI 147
>sp|B2UUJ8|TRUA_HELPS tRNA pseudouridine synthase A OS=Helicobacter pylori (strain
Shi470) GN=truA PE=3 SV=1
Length = 242
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 54 WGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSAT-GAFSSITYDVNPSFV 112
+G LD+L +Q TG H F+ +K EGG NP A AF+ T+ + V
Sbjct: 129 YGSLDALNTALKQF------TG-KHDFSMFKKEGGATTNPKRAIFNAFAYKTFIIGHECV 181
Query: 113 LMDIDG 118
+ I G
Sbjct: 182 VFKIIG 187
>sp|B5Z889|TRUA_HELPG tRNA pseudouridine synthase A OS=Helicobacter pylori (strain G27)
GN=truA PE=3 SV=1
Length = 242
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 54 WGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSAT-GAFSSITYDVNPSFV 112
+G LD+L +Q TG H F+ +K EGG NP A AF+ T+ + V
Sbjct: 129 YGSLDALNTALKQF------TG-KHDFSLFKKEGGATTNPKRAIFNAFAYKTFIIGHECV 181
Query: 113 LMDIDG 118
+ I G
Sbjct: 182 VFKIIG 187
>sp|B0TWY6|RF3_FRAP2 Peptide chain release factor 3 OS=Francisella philomiragia subsp.
philomiragia (strain ATCC 25017) GN=prfC PE=3 SV=1
Length = 525
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 25/92 (27%)
Query: 5 EVHDYLKIICPDLH-------IIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDL 57
EV D +KI C ++ +G YD Y + TL G HGH++ P+ +
Sbjct: 155 EVEDIMKIKCAPMNWPIGMGKFFKGVYD---LYNDEVTLFEG------GHGHEIHPYKKI 205
Query: 58 DSLAMLQRQLDVDI---------LVTGHTHQF 80
LA + Q+ D+ LV G +H+F
Sbjct: 206 KGLANAKDQIGADLFDDLEMEIDLVRGASHEF 237
>sp|P10220|DEN_HHV11 Deneddylase UL36 OS=Human herpesvirus 1 (strain 17) GN=UL36 PE=1
SV=1
Length = 3164
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 61 AMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVL 113
+ ++R D DI+VTG +QF GG V S+ +F S+ +DV P VL
Sbjct: 34 STMERGGDRDIVVTGARNQFAPDLEPGGSVSCMRSSL-SFLSLIFDVGPRDVL 85
>sp|Q95QD7|LIN54_CAEEL Protein lin-54 OS=Caenorhabditis elegans GN=lin-54 PE=1 SV=1
Length = 435
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 76 HTHQFTAYKHEGGVVINPG---SATGAFSSITYDVNPSFVLMDIDG 118
T++ T YK+ GG V N S T A S+ T D P V+ D G
Sbjct: 287 ETYRMTRYKNSGGAVSNTNALMSLTNASSTATPDSGPGSVVTDEHG 332
>sp|Q0BKK2|RF3_FRATO Peptide chain release factor 3 OS=Francisella tularensis subsp.
holarctica (strain OSU18) GN=prfC PE=3 SV=1
Length = 525
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 25/92 (27%)
Query: 5 EVHDYLKIICPDLH-------IIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDL 57
EV + LKI C ++ +G YD Y + TL F+ G HGH++ P+ +
Sbjct: 155 EVENILKIKCAPMNWPIGMGKYFKGVYD---LYNDEVTL----FETG--HGHEIYPYKKI 205
Query: 58 DSLAMLQRQLDVDI---------LVTGHTHQF 80
LA + + +D+ LV G +H+F
Sbjct: 206 KGLANAKDSIGIDLYEDLEMEIDLVRGASHEF 237
>sp|Q2A1V8|RF3_FRATH Peptide chain release factor 3 OS=Francisella tularensis subsp.
holarctica (strain LVS) GN=prfC PE=3 SV=1
Length = 525
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 25/92 (27%)
Query: 5 EVHDYLKIICPDLH-------IIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDL 57
EV + LKI C ++ +G YD Y + TL F+ G HGH++ P+ +
Sbjct: 155 EVENILKIKCAPMNWPIGMGKYFKGVYD---LYNDEVTL----FETG--HGHEIYPYKKI 205
Query: 58 DSLAMLQRQLDVDI---------LVTGHTHQF 80
LA + + +D+ LV G +H+F
Sbjct: 206 KGLANAKDSIGIDLYEDLEMEIDLVRGASHEF 237
>sp|A7NE28|RF3_FRATF Peptide chain release factor 3 OS=Francisella tularensis subsp.
holarctica (strain FTNF002-00 / FTA) GN=prfC PE=3 SV=1
Length = 525
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 25/92 (27%)
Query: 5 EVHDYLKIICPDLH-------IIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDL 57
EV + LKI C ++ +G YD Y + TL F+ G HGH++ P+ +
Sbjct: 155 EVENILKIKCAPMNWPIGMGKYFKGVYD---LYNDEVTL----FETG--HGHEIYPYKKI 205
Query: 58 DSLAMLQRQLDVDI---------LVTGHTHQF 80
LA + + +D+ LV G +H+F
Sbjct: 206 KGLANAKDSIGIDLYEDLEMEIDLVRGASHEF 237
>sp|B2SF23|RF3_FRATM Peptide chain release factor 3 OS=Francisella tularensis subsp.
mediasiatica (strain FSC147) GN=prfC PE=3 SV=1
Length = 525
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 25/92 (27%)
Query: 5 EVHDYLKIICPDLH-------IIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDL 57
EV + LKI C ++ +G YD Y + TL F+ G HGH++ P+ +
Sbjct: 155 EVENILKIKCAPMNWPIGMGKYFKGVYD---LYNDEVTL----FETG--HGHEIYPYKKI 205
Query: 58 DSLAMLQRQLDVDI---------LVTGHTHQF 80
LA + + +D+ LV G +H+F
Sbjct: 206 KGLANAKDAIGIDLYEDLEMEIDLVRGASHEF 237
>sp|A4IW75|RF3_FRATW Peptide chain release factor 3 OS=Francisella tularensis subsp.
tularensis (strain WY96-3418) GN=prfC PE=3 SV=1
Length = 525
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 25/92 (27%)
Query: 5 EVHDYLKIICPDLH-------IIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDL 57
EV + LKI C ++ +G YD Y + TL F+ G HGH++ P+ +
Sbjct: 155 EVENILKIKCAPMNWPIGMGKYFKGVYD---LYNDEVTL----FETG--HGHEIYPYKKI 205
Query: 58 DSLAMLQRQLDVDI---------LVTGHTHQF 80
LA + + +D+ LV G +H+F
Sbjct: 206 KGLANAKDAIGIDLYEDLEMEIDLVRGASHEF 237
>sp|A0Q892|RF3_FRATN Peptide chain release factor 3 OS=Francisella tularensis subsp.
novicida (strain U112) GN=prfC PE=3 SV=1
Length = 525
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 25/92 (27%)
Query: 5 EVHDYLKIICPDLH-------IIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDL 57
EV + LKI C ++ +G YD Y + TL F+ G HGH++ P+ +
Sbjct: 155 EVENILKIKCAPMNWPIGMGKYFKGVYD---LYNDEVTL----FETG--HGHEIYPYKKI 205
Query: 58 DSLAMLQRQLDVDI---------LVTGHTHQF 80
LA + + +D+ LV G +H+F
Sbjct: 206 KGLANAKDAIGIDLYEDLEMEIDLVRGASHEF 237
>sp|A0JP85|CNOT1_XENTR CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis
GN=cnot1 PE=2 SV=1
Length = 2388
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 91 INPGSATGAFSSITYDV-NPSFVLMDIDGLRVVVY 124
+NP T F +TY++ NPSF + D GL+ VVY
Sbjct: 348 LNP---TLNFKEVTYELDNPSFQIRDSKGLQTVVY 379
>sp|Q5NIF4|RF3_FRATT Peptide chain release factor 3 OS=Francisella tularensis subsp.
tularensis (strain SCHU S4 / Schu 4) GN=prfC PE=3 SV=1
Length = 525
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 25/92 (27%)
Query: 5 EVHDYLKIICPDLH-------IIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDL 57
EV + LKI C ++ +G YD Y + TL F+ G HGH++ P+ +
Sbjct: 155 EVENILKIKCAPINWPIGMGKYFKGVYD---LYNDEVTL----FETG--HGHEIYPYKKI 205
Query: 58 DSLAMLQRQLDVDI---------LVTGHTHQF 80
LA + + +D+ LV G +H+F
Sbjct: 206 KGLANAKDAIGIDLYEDLEMEIDLVRGASHEF 237
>sp|Q14JV7|RF3_FRAT1 Peptide chain release factor 3 OS=Francisella tularensis subsp.
tularensis (strain FSC 198) GN=prfC PE=3 SV=1
Length = 525
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 25/92 (27%)
Query: 5 EVHDYLKIICPDLH-------IIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDL 57
EV + LKI C ++ +G YD Y + TL F+ G HGH++ P+ +
Sbjct: 155 EVENILKIKCAPINWPIGMGKYFKGVYD---LYNDEVTL----FETG--HGHEIYPYKKI 205
Query: 58 DSLAMLQRQLDVDI---------LVTGHTHQF 80
LA + + +D+ LV G +H+F
Sbjct: 206 KGLANAKDAIGIDLYEDLEMEIDLVRGASHEF 237
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,938,291
Number of Sequences: 539616
Number of extensions: 2385141
Number of successful extensions: 5372
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 5343
Number of HSP's gapped (non-prelim): 49
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)