Query 031964
Match_columns 150
No_of_seqs 203 out of 1138
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 07:47:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031964.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031964hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07394 MPP_Vps29 Homo sapiens 100.0 3.9E-33 8.5E-38 204.9 19.9 140 1-140 39-178 (178)
2 KOG3325 Membrane coat complex 100.0 1.1E-28 2.4E-33 172.8 17.9 142 1-142 40-182 (183)
3 COG0622 Predicted phosphoester 100.0 1.1E-28 2.4E-33 179.9 15.6 125 2-130 39-167 (172)
4 TIGR00040 yfcE phosphoesterase 99.9 2.1E-25 4.6E-30 160.4 15.5 117 2-122 39-156 (158)
5 cd00841 MPP_YfcE Escherichia c 99.9 2.5E-23 5.4E-28 148.8 13.6 104 15-124 47-153 (155)
6 PRK09453 phosphodiesterase; Pr 99.9 6.5E-23 1.4E-27 150.8 14.2 115 4-133 53-175 (182)
7 PF12850 Metallophos_2: Calcin 99.8 3.7E-19 8E-24 126.4 13.1 110 4-119 39-156 (156)
8 cd07379 MPP_239FB Homo sapiens 99.6 1.4E-14 3.1E-19 101.4 9.4 82 5-94 40-135 (135)
9 COG2129 Predicted phosphoester 99.5 2E-13 4.3E-18 102.4 8.7 73 42-124 140-222 (226)
10 cd07398 MPP_YbbF-LpxH Escheric 99.5 4E-13 8.6E-18 100.5 9.8 84 13-96 68-217 (217)
11 TIGR01854 lipid_A_lpxH UDP-2,3 99.5 1.2E-12 2.5E-17 99.7 11.8 91 8-98 62-219 (231)
12 PRK05340 UDP-2,3-diacylglucosa 99.4 2.4E-12 5.3E-17 98.5 12.5 108 5-123 58-235 (241)
13 COG2908 Uncharacterized protei 99.4 8.4E-13 1.8E-17 99.9 9.3 107 5-122 55-230 (237)
14 cd07403 MPP_TTHA0053 Thermus t 99.4 1.4E-12 3E-17 91.0 8.9 76 4-94 34-122 (129)
15 cd07388 MPP_Tt1561 Thermus the 99.4 6.6E-12 1.4E-16 95.3 12.9 69 41-120 149-220 (224)
16 cd07400 MPP_YydB Bacillus subt 99.4 1.7E-12 3.7E-17 91.4 8.7 74 6-95 57-144 (144)
17 cd07424 MPP_PrpA_PrpB PrpA and 99.4 1.6E-12 3.5E-17 97.3 8.8 94 3-98 45-198 (207)
18 PRK09968 serine/threonine-spec 99.4 1.8E-12 4E-17 98.0 7.6 93 3-97 59-208 (218)
19 cd07392 MPP_PAE1087 Pyrobaculu 99.3 2.3E-11 5E-16 88.6 8.0 55 40-94 124-188 (188)
20 PF14582 Metallophos_3: Metall 99.2 1.3E-10 2.9E-15 87.5 10.0 73 40-122 174-251 (255)
21 cd07390 MPP_AQ1575 Aquifex aeo 99.2 3.6E-11 7.8E-16 87.3 6.9 78 7-95 62-151 (168)
22 cd07402 MPP_GpdQ Enterobacter 99.1 1.6E-09 3.4E-14 82.2 12.3 60 41-100 145-214 (240)
23 PRK11439 pphA serine/threonine 99.1 2.2E-10 4.8E-15 86.6 6.2 93 3-97 61-208 (218)
24 PRK04036 DNA polymerase II sma 99.1 4.4E-09 9.5E-14 88.5 13.8 94 5-98 319-470 (504)
25 cd07395 MPP_CSTP1 Homo sapiens 99.1 9E-09 1.9E-13 79.4 14.1 65 59-127 197-261 (262)
26 PRK11148 cyclic 3',5'-adenosin 99.0 3.2E-09 7E-14 82.7 10.6 89 42-130 159-263 (275)
27 cd07423 MPP_PrpE Bacillus subt 99.0 1.3E-09 2.8E-14 83.2 8.0 94 3-98 54-211 (234)
28 cd07386 MPP_DNA_pol_II_small_a 98.9 2.9E-09 6.2E-14 81.6 6.6 93 6-98 71-221 (243)
29 cd00840 MPP_Mre11_N Mre11 nucl 98.9 2.6E-09 5.6E-14 79.8 4.8 59 40-98 157-219 (223)
30 cd07393 MPP_DR1119 Deinococcus 98.9 4.1E-08 8.8E-13 74.8 10.8 57 42-98 167-228 (232)
31 cd07404 MPP_MS158 Microscilla 98.8 2.3E-08 5.1E-13 72.0 7.9 80 14-93 55-163 (166)
32 cd00838 MPP_superfamily metall 98.8 3.4E-08 7.4E-13 66.6 7.2 68 10-94 54-131 (131)
33 TIGR00024 SbcD_rel_arch putati 98.7 1.1E-07 2.3E-12 72.5 9.2 67 4-82 79-148 (225)
34 cd07383 MPP_Dcr2 Saccharomyces 98.7 4.6E-08 9.9E-13 72.6 7.0 94 6-99 68-195 (199)
35 TIGR00583 mre11 DNA repair pro 98.7 3.3E-07 7.1E-12 75.3 12.0 77 66-143 226-308 (405)
36 cd00839 MPP_PAPs purple acid p 98.7 1.7E-06 3.6E-11 67.6 15.0 75 59-133 184-286 (294)
37 COG4186 Predicted phosphoester 98.7 7.9E-08 1.7E-12 68.7 6.4 80 4-83 63-151 (186)
38 cd07396 MPP_Nbla03831 Homo sap 98.6 1.2E-06 2.6E-11 68.0 12.9 58 59-121 206-264 (267)
39 cd07425 MPP_Shelphs Shewanella 98.6 1.3E-07 2.8E-12 71.1 7.2 89 3-95 49-197 (208)
40 cd07397 MPP_DevT Myxococcus xa 98.6 1.7E-07 3.6E-12 71.9 6.2 25 3-27 39-63 (238)
41 cd07391 MPP_PF1019 Pyrococcus 98.5 2E-07 4.4E-12 67.8 5.0 61 13-86 74-139 (172)
42 cd07378 MPP_ACP5 Homo sapiens 98.4 4.4E-06 9.4E-11 64.8 11.3 89 41-129 168-276 (277)
43 PF00149 Metallophos: Calcineu 98.3 8.6E-07 1.9E-11 61.4 4.4 43 38-80 148-200 (200)
44 PRK11340 phosphodiesterase Yae 98.3 7.6E-06 1.6E-10 63.8 9.9 22 6-27 102-125 (271)
45 cd07399 MPP_YvnB Bacillus subt 98.2 5.4E-06 1.2E-10 62.4 7.1 109 5-120 60-203 (214)
46 cd07406 MPP_CG11883_N Drosophi 98.1 9.7E-05 2.1E-09 57.1 11.7 32 67-98 194-225 (257)
47 COG1311 HYS2 Archaeal DNA poly 98.1 1.8E-05 4E-10 65.5 7.8 93 7-99 299-449 (481)
48 PHA02546 47 endonuclease subun 98.0 4.7E-05 1E-09 61.3 9.4 67 67-142 178-244 (340)
49 cd07411 MPP_SoxB_N Thermus the 98.0 0.00031 6.8E-09 54.4 13.5 32 67-98 206-240 (264)
50 COG1768 Predicted phosphohydro 98.0 6.8E-06 1.5E-10 60.3 3.9 40 42-81 161-200 (230)
51 COG1409 Icc Predicted phosphoh 97.9 0.00018 3.9E-09 55.4 10.0 86 42-129 144-246 (301)
52 PRK13625 bis(5'-nucleosyl)-tet 97.8 0.00022 4.8E-09 54.8 9.6 43 68-120 184-226 (245)
53 cd00845 MPP_UshA_N_like Escher 97.8 0.00039 8.5E-09 53.1 10.4 32 67-98 193-226 (252)
54 cd07384 MPP_Cdc1_like Saccharo 97.8 3.7E-05 8.1E-10 56.1 4.5 75 14-98 87-168 (171)
55 COG1407 Predicted ICC-like pho 97.7 0.00016 3.5E-09 55.2 7.5 63 5-80 87-155 (235)
56 cd07385 MPP_YkuE_C Bacillus su 97.7 4.6E-05 9.9E-10 57.0 3.9 18 65-82 151-168 (223)
57 cd08165 MPP_MPPE1 human MPPE1 97.7 8.7E-05 1.9E-09 53.3 4.9 73 15-97 77-152 (156)
58 PTZ00422 glideosome-associated 97.6 0.0017 3.6E-08 53.3 12.3 93 40-132 214-320 (394)
59 cd00144 MPP_PPP_family phospho 97.6 0.00039 8.4E-09 52.1 8.0 92 3-96 41-211 (225)
60 cd07387 MPP_PolD2_C PolD2 (DNA 97.6 0.0027 5.9E-08 49.3 12.7 98 15-121 95-252 (257)
61 cd07409 MPP_CD73_N CD73 ecto-5 97.5 0.0019 4.2E-08 50.5 11.1 24 3-27 71-94 (281)
62 TIGR03729 acc_ester putative p 97.5 0.00034 7.3E-09 53.4 6.5 54 40-93 165-235 (239)
63 COG1408 Predicted phosphohydro 97.4 0.0016 3.4E-08 51.3 9.1 24 4-27 93-118 (284)
64 cd07410 MPP_CpdB_N Escherichia 97.4 0.00072 1.6E-08 52.6 7.0 38 61-98 210-249 (277)
65 COG0420 SbcD DNA repair exonuc 97.3 0.0005 1.1E-08 56.1 5.9 52 68-120 201-252 (390)
66 cd07405 MPP_UshA_N Escherichia 97.3 0.0017 3.6E-08 51.1 8.5 32 67-98 208-258 (285)
67 KOG2310 DNA repair exonuclease 97.3 0.001 2.3E-08 56.1 7.4 85 40-129 211-303 (646)
68 cd07381 MPP_CapA CapA and rela 97.3 0.0017 3.7E-08 49.4 8.2 26 2-27 65-90 (239)
69 cd08166 MPP_Cdc1_like_1 unchar 97.3 0.0014 3.1E-08 48.9 7.4 75 15-92 81-159 (195)
70 cd08164 MPP_Ted1 Saccharomyces 97.2 0.00039 8.5E-09 51.8 4.0 58 15-82 99-158 (193)
71 smart00854 PGA_cap Bacterial c 97.1 0.012 2.6E-07 44.9 11.1 26 2-27 61-86 (239)
72 PRK10966 exonuclease subunit S 97.1 0.0049 1.1E-07 50.9 9.2 62 68-131 220-282 (407)
73 cd07412 MPP_YhcR_N Bacillus su 97.1 0.0028 6E-08 49.8 7.4 32 67-98 228-262 (288)
74 cd07382 MPP_DR1281 Deinococcus 96.9 0.025 5.5E-07 43.9 11.6 95 3-98 47-200 (255)
75 cd07422 MPP_ApaH Escherichia c 96.9 0.0024 5.1E-08 49.6 5.8 50 3-54 43-125 (257)
76 COG0639 ApaH Diadenosine tetra 96.9 0.00026 5.7E-09 48.6 0.2 94 21-119 27-124 (155)
77 cd07408 MPP_SA0022_N Staphyloc 96.8 0.0049 1.1E-07 47.6 7.0 33 66-98 199-234 (257)
78 PRK00166 apaH diadenosine tetr 96.8 0.0029 6.4E-08 49.6 5.6 25 3-27 45-69 (275)
79 TIGR00668 apaH bis(5'-nucleosy 96.8 0.0029 6.2E-08 49.7 5.2 50 3-54 45-127 (279)
80 PLN02533 probable purple acid 96.7 0.044 9.6E-07 45.6 11.8 85 59-143 313-419 (427)
81 TIGR00619 sbcd exonuclease Sbc 96.6 0.0054 1.2E-07 47.4 5.8 30 68-98 213-242 (253)
82 TIGR03767 P_acnes_RR metalloph 96.6 0.027 5.9E-07 47.4 10.3 68 41-116 339-429 (496)
83 KOG1432 Predicted DNA repair e 96.6 0.053 1.2E-06 43.7 11.3 68 63-131 294-363 (379)
84 TIGR01530 nadN NAD pyrophospha 96.6 0.03 6.5E-07 48.0 10.8 23 4-27 72-94 (550)
85 cd07407 MPP_YHR202W_N Saccharo 96.5 0.013 2.7E-07 46.1 7.3 31 68-98 218-250 (282)
86 PRK09558 ushA bifunctional UDP 96.5 0.016 3.6E-07 49.5 8.2 46 68-122 245-309 (551)
87 KOG2679 Purple (tartrate-resis 96.5 0.0073 1.6E-07 47.3 5.5 75 59-133 234-322 (336)
88 smart00156 PP2Ac Protein phosp 96.4 0.16 3.4E-06 39.8 12.7 23 58-80 201-223 (271)
89 PRK09418 bifunctional 2',3'-cy 96.4 0.0099 2.1E-07 52.9 6.5 33 66-98 275-307 (780)
90 PRK11907 bifunctional 2',3'-cy 96.3 0.018 4E-07 51.4 7.6 36 63-98 337-390 (814)
91 cd07417 MPP_PP5_C PP5, C-termi 96.2 0.12 2.7E-06 41.3 11.5 23 58-80 234-256 (316)
92 cd07401 MPP_TMEM62_N Homo sapi 96.2 0.013 2.7E-07 45.3 5.8 59 40-98 166-234 (256)
93 TIGR00282 metallophosphoestera 96.1 0.1 2.3E-06 40.8 10.2 95 3-98 48-203 (266)
94 cd08163 MPP_Cdc1 Saccharomyces 96.0 0.041 8.9E-07 42.7 7.7 23 60-82 208-230 (257)
95 TIGR01390 CycNucDiestase 2',3' 96.0 0.02 4.4E-07 49.8 6.3 33 66-98 226-272 (626)
96 PRK09419 bifunctional 2',3'-cy 95.9 0.032 6.9E-07 51.8 7.5 57 42-98 238-312 (1163)
97 PRK09419 bifunctional 2',3'-cy 95.8 0.026 5.7E-07 52.3 6.8 38 61-98 862-900 (1163)
98 PRK09420 cpdB bifunctional 2', 95.5 0.041 8.9E-07 48.1 6.4 34 65-98 248-295 (649)
99 cd00844 MPP_Dbr1_N Dbr1 RNA la 95.3 0.073 1.6E-06 41.5 6.6 26 59-84 207-232 (262)
100 PTZ00480 serine/threonine-prot 95.1 0.44 9.5E-06 38.3 10.6 23 58-80 232-254 (320)
101 PF09587 PGA_cap: Bacterial ca 95.1 0.1 2.2E-06 40.1 6.7 57 39-95 184-245 (250)
102 cd07414 MPP_PP1_PPKL PP1, PPKL 94.9 0.3 6.6E-06 38.6 9.1 23 58-80 223-245 (293)
103 cd07415 MPP_PP2A_PP4_PP6 PP2A, 94.7 0.88 1.9E-05 35.9 11.4 25 57-81 214-238 (285)
104 PTZ00244 serine/threonine-prot 94.7 1.1 2.4E-05 35.5 11.9 23 58-80 225-247 (294)
105 cd07380 MPP_CWF19_N Schizosacc 94.3 0.13 2.7E-06 36.8 5.3 40 40-79 69-121 (150)
106 PTZ00239 serine/threonine prot 94.3 1.9 4.1E-05 34.4 12.3 23 58-80 216-238 (303)
107 cd08162 MPP_PhoA_N Synechococc 94.0 0.14 3.1E-06 40.8 5.6 15 67-81 231-245 (313)
108 PHA03008 hypothetical protein; 93.8 0.23 5E-06 37.1 5.9 57 39-95 160-222 (234)
109 cd07420 MPP_RdgC Drosophila me 93.4 0.19 4.1E-06 40.4 5.2 57 3-63 95-186 (321)
110 cd07418 MPP_PP7 PP7, metalloph 93.0 0.16 3.4E-06 41.7 4.4 21 58-78 274-294 (377)
111 cd07416 MPP_PP2B PP2B, metallo 92.8 0.13 2.9E-06 40.9 3.6 25 3-27 86-114 (305)
112 cd07419 MPP_Bsu1_C Arabidopsis 92.5 0.19 4.2E-06 40.0 4.2 25 3-27 99-127 (311)
113 KOG1378 Purple acid phosphatas 92.0 0.78 1.7E-05 38.4 7.2 70 59-128 323-422 (452)
114 COG0737 UshA 5'-nucleotidase/2 91.0 0.36 7.8E-06 41.0 4.4 30 69-98 236-270 (517)
115 cd07413 MPP_PA3087 Pseudomonas 90.7 0.25 5.5E-06 37.3 2.9 25 3-27 50-76 (222)
116 cd00842 MPP_ASMase acid sphing 89.5 1.3 2.7E-05 34.7 6.1 27 58-84 237-265 (296)
117 TIGR03768 RPA4764 metallophosp 87.0 5.2 0.00011 33.9 8.4 25 59-83 389-414 (492)
118 cd07405 MPP_UshA_N Escherichia 86.5 2.1 4.6E-05 33.5 5.7 42 4-46 65-134 (285)
119 TIGR03729 acc_ester putative p 86.1 0.84 1.8E-05 34.6 3.1 23 5-27 51-74 (239)
120 cd07410 MPP_CpdB_N Escherichia 85.8 2.2 4.7E-05 33.1 5.4 43 4-47 73-145 (277)
121 cd07421 MPP_Rhilphs Rhilph pho 85.4 0.63 1.4E-05 37.1 2.2 25 3-27 51-80 (304)
122 PHA02239 putative protein phos 84.7 0.88 1.9E-05 34.8 2.7 25 3-27 46-73 (235)
123 cd07408 MPP_SA0022_N Staphyloc 83.3 2.7 5.8E-05 32.3 4.8 23 4-27 60-82 (257)
124 PRK09558 ushA bifunctional UDP 82.1 3.2 7E-05 35.6 5.3 42 4-46 99-169 (551)
125 KOG0373 Serine/threonine speci 80.5 2.5 5.5E-05 32.4 3.7 25 3-27 89-117 (306)
126 PF13277 YmdB: YmdB-like prote 80.2 26 0.00056 27.3 9.9 95 3-98 45-198 (253)
127 PLN02533 probable purple acid 77.9 20 0.00044 29.9 8.6 34 15-48 199-257 (427)
128 KOG0372 Serine/threonine speci 77.0 5 0.00011 31.3 4.3 13 15-27 102-114 (303)
129 COG1692 Calcineurin-like phosp 70.8 49 0.0011 25.9 8.5 44 3-47 48-114 (266)
130 cd07378 MPP_ACP5 Homo sapiens 70.4 2.6 5.6E-05 32.4 1.5 14 14-27 70-83 (277)
131 KOG0371 Serine/threonine prote 69.1 5.7 0.00012 31.2 3.0 25 3-27 103-131 (319)
132 KOG0374 Serine/threonine speci 67.2 66 0.0014 26.0 9.5 67 58-129 234-301 (331)
133 PF03808 Glyco_tran_WecB: Glyc 66.5 4 8.7E-05 29.5 1.7 70 6-76 40-109 (172)
134 KOG3947 Phosphoesterases [Gene 66.0 8.3 0.00018 30.5 3.4 58 38-95 211-280 (305)
135 cd07401 MPP_TMEM62_N Homo sapi 64.8 7.1 0.00015 30.0 2.9 13 15-27 77-89 (256)
136 PRK09982 universal stress prot 61.6 9.5 0.00021 26.2 2.8 32 41-79 82-113 (142)
137 cd06533 Glyco_transf_WecG_TagA 58.4 5.7 0.00012 28.7 1.3 38 37-75 69-106 (171)
138 PRK13015 3-dehydroquinate dehy 57.8 16 0.00034 26.1 3.3 57 42-98 3-80 (146)
139 KOG3818 DNA polymerase epsilon 57.5 21 0.00044 30.2 4.4 44 69-120 473-517 (525)
140 COG2843 PgsA Putative enzyme o 57.1 26 0.00055 28.9 4.9 51 41-91 226-281 (372)
141 cd07421 MPP_Rhilphs Rhilph pho 53.6 40 0.00086 27.0 5.4 26 69-96 255-280 (304)
142 cd00842 MPP_ASMase acid sphing 53.0 16 0.00034 28.4 3.1 23 5-27 98-122 (296)
143 TIGR01088 aroQ 3-dehydroquinat 52.3 21 0.00046 25.3 3.3 57 42-98 1-78 (141)
144 PF04042 DNA_pol_E_B: DNA poly 52.1 15 0.00032 27.0 2.6 37 15-51 79-139 (209)
145 PTZ00422 glideosome-associated 51.0 9.9 0.00021 31.5 1.7 15 13-27 95-109 (394)
146 PRK05395 3-dehydroquinate dehy 50.4 27 0.00059 24.9 3.6 58 41-98 2-80 (146)
147 cd00466 DHQase_II Dehydroquina 47.3 23 0.00051 25.0 2.9 39 60-98 33-78 (140)
148 cd01984 AANH_like Adenine nucl 46.4 27 0.0006 21.5 2.9 25 58-82 38-62 (86)
149 PF01220 DHquinase_II: Dehydro 44.9 14 0.00031 26.1 1.5 58 41-98 1-79 (140)
150 PLN00416 carbonate dehydratase 44.4 59 0.0013 25.3 5.0 63 17-81 81-152 (258)
151 PLN02154 carbonic anhydrase 44.1 65 0.0014 25.7 5.2 64 15-80 106-177 (290)
152 PRK15005 universal stress prot 43.4 50 0.0011 22.1 4.1 31 42-79 87-117 (144)
153 COG1922 WecG Teichoic acid bio 39.9 39 0.00084 26.4 3.3 37 38-75 132-168 (253)
154 KOG1625 DNA polymerase alpha-p 39.5 30 0.00065 30.1 2.8 45 67-117 534-578 (600)
155 smart00863 tRNA_SAD Threonyl a 38.5 16 0.00034 19.9 0.7 27 68-94 8-34 (44)
156 PRK12360 4-hydroxy-3-methylbut 37.2 1.6E+02 0.0035 23.3 6.5 75 1-85 41-133 (281)
157 PF09587 PGA_cap: Bacterial ca 37.2 1E+02 0.0022 23.4 5.3 46 2-47 63-135 (250)
158 PRK15456 universal stress prot 37.1 78 0.0017 21.3 4.3 32 42-79 85-116 (142)
159 PLN03014 carbonic anhydrase 36.9 83 0.0018 25.7 4.9 63 16-80 160-231 (347)
160 PRK03011 butyrate kinase; Prov 36.4 21 0.00045 29.2 1.4 12 87-98 3-14 (358)
161 PRK01045 ispH 4-hydroxy-3-meth 36.4 2.1E+02 0.0045 22.9 7.0 73 1-85 40-130 (298)
162 cd00883 beta_CA_cladeA Carboni 35.2 1.2E+02 0.0027 22.0 5.3 75 5-81 14-93 (182)
163 COG0757 AroQ 3-dehydroquinate 34.7 51 0.0011 23.4 3.0 57 42-98 2-79 (146)
164 PTZ00235 DNA polymerase epsilo 33.4 1.3E+02 0.0028 24.0 5.4 43 69-120 235-283 (291)
165 PF01171 ATP_bind_3: PP-loop f 32.4 42 0.00092 24.1 2.4 20 59-78 87-106 (182)
166 PF00871 Acetate_kinase: Aceto 32.2 28 0.0006 28.8 1.5 23 88-121 2-24 (388)
167 cd01715 ETF_alpha The electron 31.7 57 0.0012 23.2 3.0 73 4-79 18-94 (168)
168 cd01986 Alpha_ANH_like Adenine 31.4 63 0.0014 20.8 2.9 23 59-81 52-74 (103)
169 TIGR00067 glut_race glutamate 31.0 25 0.00055 27.1 1.1 32 66-97 170-207 (251)
170 cd00884 beta_CA_cladeB Carboni 30.9 1.4E+02 0.0031 22.0 5.0 65 15-81 25-99 (190)
171 cd01992 PP-ATPase N-terminal d 30.9 57 0.0012 23.1 2.9 22 59-80 87-108 (185)
172 PRK15118 universal stress glob 30.8 96 0.0021 20.8 3.9 21 58-78 93-113 (144)
173 COG0796 MurI Glutamate racemas 30.7 18 0.0004 28.4 0.3 30 66-95 175-210 (269)
174 cd01988 Na_H_Antiporter_C The 30.6 68 0.0015 20.9 3.1 25 58-82 84-108 (132)
175 PF14360 PAP2_C: PAP2 superfam 30.4 20 0.00044 22.2 0.4 10 69-78 3-12 (74)
176 PLN03006 carbonate dehydratase 29.6 1.4E+02 0.0029 24.0 4.9 64 16-81 113-184 (301)
177 PF07973 tRNA_SAD: Threonyl an 29.4 25 0.00055 19.4 0.6 24 68-91 8-31 (44)
178 COG0737 UshA 5'-nucleotidase/2 29.0 1.4E+02 0.0029 25.5 5.2 43 4-47 93-165 (517)
179 cd01985 ETF The electron trans 28.9 63 0.0014 23.1 2.8 21 59-79 82-102 (181)
180 COG3019 Predicted metal-bindin 28.7 1.3E+02 0.0029 21.4 4.2 22 104-125 122-143 (149)
181 PF01764 Lipase_3: Lipase (cla 28.4 55 0.0012 21.8 2.4 18 60-77 54-72 (140)
182 TIGR02432 lysidine_TilS_N tRNA 28.0 68 0.0015 22.9 2.9 21 59-79 90-110 (189)
183 cd01987 USP_OKCHK USP domain i 27.8 85 0.0018 20.4 3.2 25 58-82 75-99 (124)
184 PLN03019 carbonic anhydrase 27.7 1.4E+02 0.0031 24.2 4.8 21 124-144 306-326 (330)
185 PRK11907 bifunctional 2',3'-cy 27.2 1.4E+02 0.003 27.3 5.2 22 5-27 192-213 (814)
186 TIGR03767 P_acnes_RR metalloph 26.6 39 0.00085 28.9 1.5 23 124-146 428-450 (496)
187 TIGR02707 butyr_kinase butyrat 26.6 81 0.0018 25.7 3.3 21 88-119 2-22 (351)
188 PF01012 ETF: Electron transfe 25.9 62 0.0013 22.7 2.3 22 59-80 81-102 (164)
189 PRK03692 putative UDP-N-acetyl 25.9 30 0.00065 26.7 0.7 37 40-77 130-166 (243)
190 cd03413 CbiK_C Anaerobic cobal 25.8 94 0.002 20.4 3.0 24 43-66 4-27 (103)
191 TIGR00696 wecB_tagA_cpsF bacte 25.1 34 0.00073 25.0 0.8 37 38-76 72-108 (177)
192 TIGR02855 spore_yabG sporulati 25.0 78 0.0017 25.1 2.8 24 56-79 141-165 (283)
193 KOG3662 Cell division control 24.7 73 0.0016 26.7 2.7 13 15-27 132-144 (410)
194 KOG0375 Serine-threonine phosp 24.1 92 0.002 25.9 3.1 25 3-27 131-159 (517)
195 COG3426 Butyrate kinase [Energ 24.1 47 0.001 26.7 1.4 11 88-98 5-15 (358)
196 COG0037 MesJ tRNA(Ile)-lysidin 23.9 72 0.0016 24.6 2.5 21 59-79 111-131 (298)
197 PF01784 NIF3: NIF3 (NGG1p int 23.3 1.4E+02 0.003 22.7 3.9 30 41-77 171-200 (241)
198 PRK10437 carbonic anhydrase; P 22.8 2.4E+02 0.0052 21.4 5.1 65 15-81 34-103 (220)
199 PRK14665 mnmA tRNA-specific 2- 22.7 2.3E+02 0.005 23.2 5.3 50 60-119 105-154 (360)
200 PRK13371 4-hydroxy-3-methylbut 22.5 4.3E+02 0.0094 22.0 6.8 76 1-84 78-173 (387)
201 cd01993 Alpha_ANH_like_II This 22.3 89 0.0019 22.0 2.6 21 59-79 97-117 (185)
202 COG0112 GlyA Glycine/serine hy 21.8 1.2E+02 0.0026 25.4 3.4 26 57-82 155-180 (413)
203 PRK00087 4-hydroxy-3-methylbut 20.9 3.3E+02 0.0072 24.1 6.2 73 1-85 40-130 (647)
204 PRK08654 pyruvate carboxylase 20.4 5.3E+02 0.012 22.0 7.2 71 4-79 15-85 (499)
No 1
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=100.00 E-value=3.9e-33 Score=204.90 Aligned_cols=140 Identities=67% Similarity=1.159 Sum_probs=124.4
Q ss_pred CCcHHHHHHHHhhCCCEEEEeCCCCCCCCCCCeeEEEECCEEEEEecCcccccCCCHHHHHHHHhhCCCcEEEECCCCCc
Q 031964 1 MTFQEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQF 80 (150)
Q Consensus 1 ~~~~ev~~~l~~~~~~~~~V~GN~D~~~~lp~~~~~~~~~~~i~~~HG~~~~~~~~~~~l~~~~~~~~~div~~GHtH~~ 80 (150)
++++++++.|++++.++++|+||||+...+|....++++|.+|+++||+++.++...+.+.++++..++|+++|||||.|
T Consensus 39 i~~~~~~~~l~~~~~~~~~V~GN~D~~~~lp~~~~~~~~g~~i~l~HG~~~~~~~~~~~~~~~~~~~~~dvii~GHTH~p 118 (178)
T cd07394 39 LCSKETYDYLKTIAPDVHIVRGDFDENLNYPETKVITVGQFKIGLIHGHQVVPWGDPDSLAALQRQLDVDILISGHTHKF 118 (178)
T ss_pred CCCHHHHHHHHhhCCceEEEECCCCccccCCCcEEEEECCEEEEEEECCcCCCCCCHHHHHHHHHhcCCCEEEECCCCcc
Confidence 45688999999877679999999998778999999999999999999998877666677777777889999999999999
Q ss_pred ceEEECCEEEEcCCCCCCCCCCCCCCCCCcEEEEEEeCCeEEEEEEEeeCCeEEEEEEEE
Q 031964 81 TAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 140 (150)
Q Consensus 81 ~~~~~~~~~~iNpGS~~~~~~~~~~~~~~s~~il~~~~~~i~v~~~~~~~~~~~~~~~~~ 140 (150)
+....++++++||||++.|+.++++.+.+||++++++++.+.++++++.+++++.+.++|
T Consensus 119 ~~~~~~g~~viNPGSv~~~~~~~~~~~~~syail~~~~~~~~~~~~~l~~~~~~~~~~~~ 178 (178)
T cd07394 119 EAFEHEGKFFINPGSATGAFSPLDPNVIPSFVLMDIQGSKVVTYVYQLIDGEVKVEKIEY 178 (178)
T ss_pred eEEEECCEEEEECCCCCCCCCCCCCCCCCeEEEEEecCCeEEEEEEEEECCcEEEEEecC
Confidence 999999999999999998865555666789999999999999999999999999998876
No 2
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-28 Score=172.78 Aligned_cols=142 Identities=67% Similarity=1.154 Sum_probs=132.7
Q ss_pred CCcHHHHHHHHhhCCCEEEEeCCCCCCCCCCCeeEEEECCEEEEEecCcccccCCCHHHHHHHHhhCCCcEEEECCCCCc
Q 031964 1 MTFQEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQF 80 (150)
Q Consensus 1 ~~~~ev~~~l~~~~~~~~~V~GN~D~~~~lp~~~~~~~~~~~i~~~HG~~~~~~~~~~~l~~~~~~~~~div~~GHtH~~ 80 (150)
+|+.|.+++|+.++.++..|||..|....+|+..+++++.+||.++|||...||++++.|..++++.++|+++.||||..
T Consensus 40 lcs~e~~dylk~l~~dvhiVrGeFD~~~~yP~~kvvtvGqfkIG~chGhqViP~gd~~sL~~LaRqldvDILl~G~Th~f 119 (183)
T KOG3325|consen 40 LCSKESYDYLKTLSSDVHIVRGEFDENLKYPENKVVTVGQFKIGLCHGHQVIPWGDPESLALLARQLDVDILLTGHTHKF 119 (183)
T ss_pred cchHHHHHHHHhhCCCcEEEecccCccccCCccceEEeccEEEEeecCcEeecCCCHHHHHHHHHhcCCcEEEeCCceeE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEECCEEEEcCCCCCCCCCCCCCC-CCCcEEEEEEeCCeEEEEEEEeeCCeEEEEEEEEec
Q 031964 81 TAYKHEGGVVINPGSATGAFSSITYD-VNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKK 142 (150)
Q Consensus 81 ~~~~~~~~~~iNpGS~~~~~~~~~~~-~~~s~~il~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 142 (150)
.+.+.+|..+|||||++..+...+-+ ..|||+++|+....+....|++.++++++.|++|++
T Consensus 120 ~Aye~eg~ffvnPGSaTGAfn~~~t~~~~PSFvLmDiqg~~~v~YvY~lidgeVkVdki~ykK 182 (183)
T KOG3325|consen 120 EAYEHEGKFFVNPGSATGAFNVSDTDIIVPSFVLMDIQGSTVVTYVYRLIDGEVKVDKIEYKK 182 (183)
T ss_pred EEEEeCCcEEeCCCcccCCCcccccCCCCCceEEEEecCCEEEEEEeeeeCCcEEEEEEEecC
Confidence 99999999999999998876443434 679999999999999999999999999999999986
No 3
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=99.96 E-value=1.1e-28 Score=179.95 Aligned_cols=125 Identities=34% Similarity=0.472 Sum_probs=108.5
Q ss_pred CcHHHHHHHHh-hCCCEEEEeCCCCCCC---CCCCeeEEEECCEEEEEecCcccccCCCHHHHHHHHhhCCCcEEEECCC
Q 031964 2 TFQEVHDYLKI-ICPDLHIIRGEYDEET---RYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHT 77 (150)
Q Consensus 2 ~~~ev~~~l~~-~~~~~~~V~GN~D~~~---~lp~~~~~~~~~~~i~~~HG~~~~~~~~~~~l~~~~~~~~~div~~GHt 77 (150)
.++..+..+.. +..++++|+||||... .+|+...++++|.||+++|||.+.+..+...+..++++.++|++++|||
T Consensus 39 ~~~~~~~~l~~~~~~~i~~V~GN~D~~~~~~~~p~~~~~~~~g~ki~l~HGh~~~~~~~~~~l~~la~~~~~Dvli~GHT 118 (172)
T COG0622 39 TSPFTLDALEGGLAAKLIAVRGNCDGEVDQEELPEELVLEVGGVKIFLTHGHLYFVKTDLSLLEYLAKELGADVLIFGHT 118 (172)
T ss_pred CCccchHHhhcccccceEEEEccCCCccccccCChhHeEEECCEEEEEECCCccccccCHHHHHHHHHhcCCCEEEECCC
Confidence 45667778887 4667999999999975 7999999999999999999999888888888999999999999999999
Q ss_pred CCcceEEECCEEEEcCCCCCCCCCCCCCCCCCcEEEEEEeCCeEEEEEEEeeC
Q 031964 78 HQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELID 130 (150)
Q Consensus 78 H~~~~~~~~~~~~iNpGS~~~~~~~~~~~~~~s~~il~~~~~~i~v~~~~~~~ 130 (150)
|.|..++.++++++||||++.||+ + ..+||+++++++..+.+..++...
T Consensus 119 H~p~~~~~~~i~~vNPGS~s~pr~---~-~~~sy~il~~~~~~~~~~~~~~~~ 167 (172)
T COG0622 119 HKPVAEKVGGILLVNPGSVSGPRG---G-NPASYAILDVDNLEVEVLFLERDR 167 (172)
T ss_pred CcccEEEECCEEEEcCCCcCCCCC---C-CCcEEEEEEcCCCEEEEEEeeccc
Confidence 999999999999999999999852 3 456999999998887765555443
No 4
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.94 E-value=2.1e-25 Score=160.44 Aligned_cols=117 Identities=35% Similarity=0.529 Sum_probs=100.1
Q ss_pred CcHHHHHHHHhhCCCEEEEeCCCCCC-CCCCCeeEEEECCEEEEEecCcccccCCCHHHHHHHHhhCCCcEEEECCCCCc
Q 031964 2 TFQEVHDYLKIICPDLHIIRGEYDEE-TRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQF 80 (150)
Q Consensus 2 ~~~ev~~~l~~~~~~~~~V~GN~D~~-~~lp~~~~~~~~~~~i~~~HG~~~~~~~~~~~l~~~~~~~~~div~~GHtH~~ 80 (150)
++.++++.+++++.++++|+||||.+ ..+|....++++|.+|+++||++..|....+.+..+++..++|+++|||||.+
T Consensus 39 ~~~~~~~~l~~~~~~~~~V~GN~D~~~~~~~~~~~~~~~g~~i~l~Hg~~~~~~~~~~~l~~~~~~~~~d~vi~GHtH~~ 118 (158)
T TIGR00040 39 TSPFVLKEFEDLAAKVIAVRGNNDGERDELPEEEIFEAEGIDFGLVHGDLVYPRGDLLVLEYLAKELGVDVLIFGHTHIP 118 (158)
T ss_pred CCHHHHHHHHHhCCceEEEccCCCchhhhCCcceEEEECCEEEEEEeCcccccCCCHHHHHHHHhccCCCEEEECCCCCC
Confidence 35788999998887799999999976 57899999999999999999998766666666777767788999999999999
Q ss_pred ceEEECCEEEEcCCCCCCCCCCCCCCCCCcEEEEEEeCCeEE
Q 031964 81 TAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVV 122 (150)
Q Consensus 81 ~~~~~~~~~~iNpGS~~~~~~~~~~~~~~s~~il~~~~~~i~ 122 (150)
.....++++++||||++.|+ .+ ..++|++++++++.++
T Consensus 119 ~~~~~~~~~~iNpGs~~~~~---~~-~~~~~~il~~~~~~~~ 156 (158)
T TIGR00040 119 VAEELRGILLINPGSLTGPR---NG-NTPSYAILDVDKDKVT 156 (158)
T ss_pred ccEEECCEEEEECCcccccc---CC-CCCeEEEEEecCCeEE
Confidence 99999999999999999874 22 2689999999887654
No 5
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.91 E-value=2.5e-23 Score=148.78 Aligned_cols=104 Identities=30% Similarity=0.417 Sum_probs=86.1
Q ss_pred CCEEEEeCCCCCCC---CCCCeeEEEECCEEEEEecCcccccCCCHHHHHHHHhhCCCcEEEECCCCCcceEEECCEEEE
Q 031964 15 PDLHIIRGEYDEET---RYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVI 91 (150)
Q Consensus 15 ~~~~~V~GN~D~~~---~lp~~~~~~~~~~~i~~~HG~~~~~~~~~~~l~~~~~~~~~div~~GHtH~~~~~~~~~~~~i 91 (150)
.++++|+||||... .+|....+++++.+++++||++..++..... .++++..++|++++||||.|.....++++++
T Consensus 47 ~~~~~V~GNhD~~~~~~~~p~~~~~~~~g~~i~v~Hg~~~~~~~~~~~-~~~~~~~~~d~vi~GHtH~~~~~~~~~~~~i 125 (155)
T cd00841 47 APVIAVRGNCDGEVDFPILPEEAVLEIGGKRIFLTHGHLYGVKNGLDR-LYLAKEGGADVVLYGHTHIPVIEKIGGVLLL 125 (155)
T ss_pred CcEEEEeCCCCCcCCcccCCceEEEEECCEEEEEECCcccccccchhh-hhhhhhcCCCEEEECcccCCccEEECCEEEE
Confidence 46999999999875 7899999999999999999998755543333 4445667899999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCcEEEEEEeCCeEEEE
Q 031964 92 NPGSATGAFSSITYDVNPSFVLMDIDGLRVVVY 124 (150)
Q Consensus 92 NpGS~~~~~~~~~~~~~~s~~il~~~~~~i~v~ 124 (150)
||||++.|+ + .+.++|+++++++ +++++
T Consensus 126 npGs~~~~~---~-~~~~~~~i~~~~~-~~~~~ 153 (155)
T cd00841 126 NPGSLSLPR---G-GGPPTYAILEIDD-KGEVE 153 (155)
T ss_pred eCCCccCcC---C-CCCCeEEEEEecC-CCcEE
Confidence 999999974 2 4678999999987 55443
No 6
>PRK09453 phosphodiesterase; Provisional
Probab=99.90 E-value=6.5e-23 Score=150.76 Aligned_cols=115 Identities=32% Similarity=0.447 Sum_probs=90.9
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCC-----CCCC---eeEEEECCEEEEEecCcccccCCCHHHHHHHHhhCCCcEEEEC
Q 031964 4 QEVHDYLKIICPDLHIIRGEYDEET-----RYPE---TKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTG 75 (150)
Q Consensus 4 ~ev~~~l~~~~~~~~~V~GN~D~~~-----~lp~---~~~~~~~~~~i~~~HG~~~~~~~~~~~l~~~~~~~~~div~~G 75 (150)
.++++.|++++.++++|+||||... .+|. ...+++++.+|+++||++..+ + .+++..++|+++||
T Consensus 53 ~~~~~~l~~~~~~v~~V~GNhD~~~~~~~~~~~~~~~~~~~~l~g~~i~l~HG~~~~~----~---~~~~~~~~d~vi~G 125 (182)
T PRK09453 53 KKVAELLNAYADKIIAVRGNCDSEVDQMLLHFPIMAPYQQVLLEGKRLFLTHGHLYGP----E---NLPALHDGDVLVYG 125 (182)
T ss_pred HHHHHHHHhcCCceEEEccCCcchhhhhccCCcccCceEEEEECCeEEEEECCCCCCh----h---hcccccCCCEEEEC
Confidence 5688889888767999999999752 2333 356788999999999987642 1 11345679999999
Q ss_pred CCCCcceEEECCEEEEcCCCCCCCCCCCCCCCCCcEEEEEEeCCeEEEEEEEeeCCeE
Q 031964 76 HTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEV 133 (150)
Q Consensus 76 HtH~~~~~~~~~~~~iNpGS~~~~~~~~~~~~~~s~~il~~~~~~i~v~~~~~~~~~~ 133 (150)
|||.|.....++++++||||++.|+ +++.++|+++++. .++++++..+++
T Consensus 126 HtH~p~~~~~~~~~~iNpGs~~~p~----~~~~~s~~il~~~----~~~~~~~~~~~~ 175 (182)
T PRK09453 126 HTHIPVAEKQGGIILFNPGSVSLPK----GGYPASYGILDDN----VLSVIDLEGGEV 175 (182)
T ss_pred CCCCCcceEECCEEEEECCCccccC----CCCCCeEEEEECC----cEEEEECCCCeE
Confidence 9999999999999999999999974 3567899999973 346777777774
No 7
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.82 E-value=3.7e-19 Score=126.37 Aligned_cols=110 Identities=32% Similarity=0.455 Sum_probs=89.3
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCC--------CCCCeeEEEECCEEEEEecCcccccCCCHHHHHHHHhhCCCcEEEEC
Q 031964 4 QEVHDYLKIICPDLHIIRGEYDEET--------RYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTG 75 (150)
Q Consensus 4 ~ev~~~l~~~~~~~~~V~GN~D~~~--------~lp~~~~~~~~~~~i~~~HG~~~~~~~~~~~l~~~~~~~~~div~~G 75 (150)
.++++.+++. ++++|+||||... .++....+++++.+++++||++..+....+.+.+.+...+++++++|
T Consensus 39 ~~~~~~~~~~--~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~G 116 (156)
T PF12850_consen 39 EEVLELLRDI--PVYVVRGNHDNWAFPNENDEEYLLDALRLTIDGFKILLSHGHPYDVQWDPAELREILSRENVDLVLHG 116 (156)
T ss_dssp HHHHHHHHHH--EEEEE--CCHSTHHHSEECTCSSHSEEEEEETTEEEEEESSTSSSSTTTHHHHHHHHHHTTSSEEEES
T ss_pred HHHHHHHhcC--CEEEEeCCcccccchhhhhccccccceeeeecCCeEEEECCCCcccccChhhhhhhhcccCCCEEEcC
Confidence 5788888888 6999999999751 25667788999999999999998776666667777778999999999
Q ss_pred CCCCcceEEECCEEEEcCCCCCCCCCCCCCCCCCcEEEEEEeCC
Q 031964 76 HTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGL 119 (150)
Q Consensus 76 HtH~~~~~~~~~~~~iNpGS~~~~~~~~~~~~~~s~~il~~~~~ 119 (150)
|+|.+.....+++.++||||++.++. ....+|++++++++
T Consensus 117 H~H~~~~~~~~~~~~~~~Gs~~~~~~----~~~~~~~i~~~~~~ 156 (156)
T PF12850_consen 117 HTHRPQVFKIGGIHVINPGSIGGPRH----GDQSGYAILDIEDK 156 (156)
T ss_dssp SSSSEEEEEETTEEEEEE-GSSS-SS----SSSEEEEEEEETTT
T ss_pred CcccceEEEECCEEEEECCcCCCCCC----CCCCEEEEEEEecC
Confidence 99999998899999999999999742 22789999999763
No 8
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.58 E-value=1.4e-14 Score=101.45 Aligned_cols=82 Identities=18% Similarity=0.159 Sum_probs=62.9
Q ss_pred HHHHHHHhhCCC-EEEEeCCCCCCCCCCCeeEEEECCEEEEEecCcccccC--------CCHHHHHHHHhhCCCcEEEEC
Q 031964 5 EVHDYLKIICPD-LHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPW--------GDLDSLAMLQRQLDVDILVTG 75 (150)
Q Consensus 5 ev~~~l~~~~~~-~~~V~GN~D~~~~lp~~~~~~~~~~~i~~~HG~~~~~~--------~~~~~l~~~~~~~~~div~~G 75 (150)
+.+++++++..+ +++|+||||.... .++.+|+++||+++.+. ...+.+.+++++.++++++||
T Consensus 40 ~~~~~l~~~~~~~~~~v~GNHD~~~~--------~~~~~ilv~H~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~G 111 (135)
T cd07379 40 KFLDWLKSLPHPHKIVIAGNHDLTLD--------PEDTDILVTHGPPYGHLDLVSSGQRVGCEELLNRVQRVRPKLHVFG 111 (135)
T ss_pred HHHHHHHhCCCCeEEEEECCCCCcCC--------CCCCEEEEECCCCCcCccccccCcccCCHHHHHHHHHHCCcEEEEc
Confidence 366777776533 5789999998533 47889999999987533 123456677778889999999
Q ss_pred CCCCcc-eE----EECCEEEEcCC
Q 031964 76 HTHQFT-AY----KHEGGVVINPG 94 (150)
Q Consensus 76 HtH~~~-~~----~~~~~~~iNpG 94 (150)
|||.+. .. +.++++++||+
T Consensus 112 H~H~~~~~~~~~~~~~~t~~in~~ 135 (135)
T cd07379 112 HIHEGYGAERVLDTDGETLFVNAS 135 (135)
T ss_pred CcCCcCceeEecccCCCEEEEeCC
Confidence 999996 55 56899999996
No 9
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.48 E-value=2e-13 Score=102.41 Aligned_cols=73 Identities=18% Similarity=0.224 Sum_probs=58.2
Q ss_pred EEEEecCcccccC---------CCHHHHHHHHhhCCCcEEEECCCCCc-ceEEECCEEEEcCCCCCCCCCCCCCCCCCcE
Q 031964 42 KLGLCHGHQVIPW---------GDLDSLAMLQRQLDVDILVTGHTHQF-TAYKHEGGVVINPGSATGAFSSITYDVNPSF 111 (150)
Q Consensus 42 ~i~~~HG~~~~~~---------~~~~~l~~~~~~~~~div~~GHtH~~-~~~~~~~~~~iNpGS~~~~~~~~~~~~~~s~ 111 (150)
+|+++|..|++.. -+...++++..+.++.+.+|||.|.. .....++++++|||+++. .+|
T Consensus 140 ~Il~~HaPP~gt~~d~~~g~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~iG~TivVNPG~~~~----------g~y 209 (226)
T COG2129 140 NILLTHAPPYGTLLDTPSGYVHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDKIGNTIVVNPGPLGE----------GRY 209 (226)
T ss_pred eEEEecCCCCCccccCCCCccccchHHHHHHHHHhCCceEEEeeecccccccccCCeEEECCCCccC----------ceE
Confidence 4999998876421 23456888888889999999999975 667789999999999775 479
Q ss_pred EEEEEeCCeEEEE
Q 031964 112 VLMDIDGLRVVVY 124 (150)
Q Consensus 112 ~il~~~~~~i~v~ 124 (150)
|++++++..+..+
T Consensus 210 A~i~l~~~~Vk~~ 222 (226)
T COG2129 210 ALIELEKEVVKLE 222 (226)
T ss_pred EEEEecCcEEEEE
Confidence 9999998865543
No 10
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=99.47 E-value=4e-13 Score=100.54 Aligned_cols=84 Identities=25% Similarity=0.276 Sum_probs=63.6
Q ss_pred hCCCEEEEeCCCCCCC-----------CCCCee-EEEECCEEEEEecCcccccCC-------------------------
Q 031964 13 ICPDLHIIRGEYDEET-----------RYPETK-TLTIGQFKLGLCHGHQVIPWG------------------------- 55 (150)
Q Consensus 13 ~~~~~~~V~GN~D~~~-----------~lp~~~-~~~~~~~~i~~~HG~~~~~~~------------------------- 55 (150)
.+.++++|+||||... .++... .++++|.+++++||+.+.+..
T Consensus 68 ~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~HG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (217)
T cd07398 68 RGTRVYYVPGNHDFLLGDFFAEELGLILLPDPLVHLELDGKRILLEHGDQFDTDDRAYQLLRRLGRNPYDQLLFLNRPLN 147 (217)
T ss_pred CCCeEEEECCCchHHHHhHHHHHcCCEEeccceEEEeeCCeEEEEECCCcCchhHHHHHHHHHHhCcHHHHHHHhcchHH
Confidence 3457999999999872 133344 788999999999999874310
Q ss_pred ------------C-----------------HHHHHHHHhhCCCcEEEECCCCCcceEEECCEEEEcCCCC
Q 031964 56 ------------D-----------------LDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSA 96 (150)
Q Consensus 56 ------------~-----------------~~~l~~~~~~~~~div~~GHtH~~~~~~~~~~~~iNpGS~ 96 (150)
. +..+.+.+...+++++++||||.+.....++..++|+||+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~~n~G~W 217 (217)
T cd07398 148 RRRGIAGGLRWSSRYLKKKVKKAVAIIDVFEEAVARLARRKGVDGVICGHTHRPALHELDGKLYINLGDW 217 (217)
T ss_pred HHHHHHHhhhhhhHHHHhCccchHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCeEEECCEEEEECCCC
Confidence 0 0012334456799999999999999999999999999996
No 11
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=99.46 E-value=1.2e-12 Score=99.73 Aligned_cols=91 Identities=20% Similarity=0.172 Sum_probs=67.0
Q ss_pred HHHHhhCCCEEEEeCCCCCCC-----------CCCCeeEEEECCEEEEEecCcccccC------------C---------
Q 031964 8 DYLKIICPDLHIIRGEYDEET-----------RYPETKTLTIGQFKLGLCHGHQVIPW------------G--------- 55 (150)
Q Consensus 8 ~~l~~~~~~~~~V~GN~D~~~-----------~lp~~~~~~~~~~~i~~~HG~~~~~~------------~--------- 55 (150)
+.|.+.+.++++|+||||+.. -++....++++|.+++++||+.+... .
T Consensus 62 ~~L~~~~~~v~~v~GNHD~~~~~~~~~~~gi~~l~~~~~~~~~g~~ill~HGd~~~~~d~~y~~~r~~~r~~~~~~~~~~ 141 (231)
T TIGR01854 62 RQVSDQGVPCYFMHGNRDFLIGKRFAREAGMTLLPDPSVIDLYGQKVLLMHGDTLCTDDTAYQAFRAKVHQPWLQRLFLH 141 (231)
T ss_pred HHHHHCCCeEEEEcCCCchhhhHHHHHHCCCEEECCCEEEEECCEEEEEEcCccccCCCHHHHHHHHHHhCHHHHHHHHh
Confidence 333333467999999999752 25667778999999999999976210 0
Q ss_pred -------------------------------CHHHHHHHHhhCCCcEEEECCCCCcceEEEC----CEEEEcCCCCCC
Q 031964 56 -------------------------------DLDSLAMLQRQLDVDILVTGHTHQFTAYKHE----GGVVINPGSATG 98 (150)
Q Consensus 56 -------------------------------~~~~l~~~~~~~~~div~~GHtH~~~~~~~~----~~~~iNpGS~~~ 98 (150)
.++.+.++++..++|+++|||||+|.....+ +..++|.|++..
T Consensus 142 l~~~~r~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GHtH~~~~~~~~~~~~~~~~~~lgdW~~ 219 (231)
T TIGR01854 142 LPLAVRVKLARKIRAESRADKQMKSQDIMDVNPAEVAAVMRRYGVDRLIHGHTHRPAIHPLQADGQPATRIVLGDWYR 219 (231)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcchhhCCCHHHHHHHHHHcCCCEEEECCccCcceeecccCCCccEEEEECCCcc
Confidence 0123445556679999999999999877655 678999999964
No 12
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.44 E-value=2.4e-12 Score=98.49 Aligned_cols=108 Identities=22% Similarity=0.250 Sum_probs=74.2
Q ss_pred HHHHHHHhh---CCCEEEEeCCCCCCC-----------CCCCeeEEEECCEEEEEecCcccccC----------------
Q 031964 5 EVHDYLKII---CPDLHIIRGEYDEET-----------RYPETKTLTIGQFKLGLCHGHQVIPW---------------- 54 (150)
Q Consensus 5 ev~~~l~~~---~~~~~~V~GN~D~~~-----------~lp~~~~~~~~~~~i~~~HG~~~~~~---------------- 54 (150)
++++.|+++ +.++++|+||||+.. .+|....++++|.+++++||+.+...
T Consensus 58 ~~~~~l~~l~~~g~~v~~v~GNHD~~~~~~~~~~~g~~~l~~~~~~~~~g~~i~l~HGd~~~~~d~~y~~~r~~~r~~~~ 137 (241)
T PRK05340 58 EIAAALKALSDSGVPCYFMHGNRDFLLGKRFAKAAGMTLLPDPSVIDLYGQRVLLLHGDTLCTDDKAYQRFRRKVRNPWL 137 (241)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCchhhhHHHHHhCCCEEeCCcEEEEECCEEEEEECCcccccCCHHHHHHHHHHhCHHH
Confidence 445555544 357999999999751 25777788999999999999976200
Q ss_pred ------------------------------------CCHHHHHHHHhhCCCcEEEECCCCCcceEEEC-C---EEEEcCC
Q 031964 55 ------------------------------------GDLDSLAMLQRQLDVDILVTGHTHQFTAYKHE-G---GVVINPG 94 (150)
Q Consensus 55 ------------------------------------~~~~~l~~~~~~~~~div~~GHtH~~~~~~~~-~---~~~iNpG 94 (150)
...+.+.+.+++.+++++++||||+|...... + ..++|.|
T Consensus 138 ~~~~~~~p~~~~~~ia~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~~~~~~~lg 217 (241)
T PRK05340 138 QWLFLALPLSIRLRIAAKMRAKSKAANQSKSLEIMDVNPEAVAALMEKHGVDTLIHGHTHRPAIHQLQAGGQPATRIVLG 217 (241)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHHhCCCEEEECcccCcceeeccCCCcceEEEEeC
Confidence 01123455666779999999999999765442 2 3689999
Q ss_pred CCCCCCCCCCCCCCCcEEEEEEeCCeEEE
Q 031964 95 SATGAFSSITYDVNPSFVLMDIDGLRVVV 123 (150)
Q Consensus 95 S~~~~~~~~~~~~~~s~~il~~~~~~i~v 123 (150)
++.. ..+|+.+ +++++..
T Consensus 218 dw~~---------~~~~~~~--~~~~~~~ 235 (241)
T PRK05340 218 DWHE---------QGSVLKV--DADGVEL 235 (241)
T ss_pred CCCC---------CCeEEEE--ECCceEE
Confidence 9864 2566554 4555543
No 13
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.43 E-value=8.4e-13 Score=99.87 Aligned_cols=107 Identities=22% Similarity=0.217 Sum_probs=80.0
Q ss_pred HHHHHHHhh---CCCEEEEeCCCCCC------------CCCCCeeEEEECCEEEEEecCcccccCC--------------
Q 031964 5 EVHDYLKII---CPDLHIIRGEYDEE------------TRYPETKTLTIGQFKLGLCHGHQVIPWG-------------- 55 (150)
Q Consensus 5 ev~~~l~~~---~~~~~~V~GN~D~~------------~~lp~~~~~~~~~~~i~~~HG~~~~~~~-------------- 55 (150)
+|.+.|+.+ +.++++++||||+. .-+|+...+++.|.+++++||+.+.+..
T Consensus 55 ~V~~~l~~~a~~G~~v~~i~GN~Dfll~~~f~~~~g~~~l~~~~~~~~l~g~~~Ll~HGD~f~t~~~~y~~~r~~~~~~~ 134 (237)
T COG2908 55 QVAQKLLRLARKGTRVYYIHGNHDFLLGKRFAQEAGGMTLLPDPIVLDLYGKRILLAHGDTFCTDDRAYQWFRYKVHWAW 134 (237)
T ss_pred HHHHHHHHHHhcCCeEEEecCchHHHHHHHHHhhcCceEEcCcceeeeecCcEEEEEeCCcccchHHHHHHHHHHcccHH
Confidence 455555544 46799999999965 2368999999999999999999763210
Q ss_pred -----------------------C-----------------HHHHHHHHhhCCCcEEEECCCCCcceEEECCEEEEcCCC
Q 031964 56 -----------------------D-----------------LDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGS 95 (150)
Q Consensus 56 -----------------------~-----------------~~~l~~~~~~~~~div~~GHtH~~~~~~~~~~~~iNpGS 95 (150)
+ ++...+.++..++|.+||||||+|.....++..+||-|+
T Consensus 135 ~~~lflnl~l~~R~ri~~k~r~~s~~~k~~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~~i~~~~yi~lGd 214 (237)
T COG2908 135 LQLLFLNLPLRVRRRIAYKIRSLSSWAKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIHNIPGITYINLGD 214 (237)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhhHHhHHhhhhHHHHHHhhHHHHHHHHHHcCCCEEEecCcccHhhccCCCceEEecCc
Confidence 0 112334556789999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCcEEEEEEeCCeEE
Q 031964 96 ATGAFSSITYDVNPSFVLMDIDGLRVV 122 (150)
Q Consensus 96 ~~~~~~~~~~~~~~s~~il~~~~~~i~ 122 (150)
+-. .=++++++++..+
T Consensus 215 W~~-----------~~s~~~v~~~~~~ 230 (237)
T COG2908 215 WVS-----------EGSILEVDDGGLE 230 (237)
T ss_pred chh-----------cceEEEEecCcEE
Confidence 883 1255666666543
No 14
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.41 E-value=1.4e-12 Score=91.04 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=58.9
Q ss_pred HHHHHHHHhh-CCCEEEEeCCCCCCCCCCCeeEEEECCEEEEEecCcccccC-------CCHHHHHHHHhhCCCcEEEEC
Q 031964 4 QEVHDYLKII-CPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPW-------GDLDSLAMLQRQLDVDILVTG 75 (150)
Q Consensus 4 ~ev~~~l~~~-~~~~~~V~GN~D~~~~lp~~~~~~~~~~~i~~~HG~~~~~~-------~~~~~l~~~~~~~~~div~~G 75 (150)
.++++.+.++ +.++++|+|||| .+|+++|+.+..+. ...+.+.+++.+.++++++||
T Consensus 34 ~~~~~~~~~~~~~~~~~V~GN~D---------------~~Ilv~H~pp~~~~~~~~~~~~g~~~l~~~l~~~~~~~vl~G 98 (129)
T cd07403 34 KEYLEYLVTMLNVPVYYVHGNHD---------------VDILLTHAPPAGIGDGEDFAHRGFEAFLDFIDRFRPKLFIHG 98 (129)
T ss_pred hHHHHHHHHHcCCCEEEEeCCCc---------------cCEEEECCCCCcCcCcccccccCHHHHHHHHHHHCCcEEEEc
Confidence 3456667665 446899999999 78999999876443 234556677777789999999
Q ss_pred CCCCcceEE-----ECCEEEEcCC
Q 031964 76 HTHQFTAYK-----HEGGVVINPG 94 (150)
Q Consensus 76 HtH~~~~~~-----~~~~~~iNpG 94 (150)
|+|.+.... .+++.++|++
T Consensus 99 H~H~~~~~~~~~~~~~~t~~~n~~ 122 (129)
T cd07403 99 HTHLNYGYQLRIRRVGDTTVINAY 122 (129)
T ss_pred CcCCCcCccccccccCCEEEEeCC
Confidence 999997655 7899999986
No 15
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.41 E-value=6.6e-12 Score=95.34 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=55.8
Q ss_pred EEEEEecCccccc---CCCHHHHHHHHhhCCCcEEEECCCCCcceEEECCEEEEcCCCCCCCCCCCCCCCCCcEEEEEEe
Q 031964 41 FKLGLCHGHQVIP---WGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDID 117 (150)
Q Consensus 41 ~~i~~~HG~~~~~---~~~~~~l~~~~~~~~~div~~GHtH~~~~~~~~~~~~iNpGS~~~~~~~~~~~~~~s~~il~~~ 117 (150)
..|+++|..|+.. ..+...+.++.+..++.+++|||.| ...++.++++++|||++.. ..||+++++
T Consensus 149 ~~VLv~H~PP~g~g~~h~GS~alr~~I~~~~P~l~i~GHih-~~~~~~g~t~vvNpg~~~~----------g~~a~i~~~ 217 (224)
T cd07388 149 RKVFLFHTPPYHKGLNEQGSHEVAHLIKTHNPLVVLVGGKG-QKHELLGASWVVVPGDLSE----------GRYALLDLR 217 (224)
T ss_pred CeEEEECCCCCCCCCCccCHHHHHHHHHHhCCCEEEEcCCc-eeEEEeCCEEEECCCcccC----------CcEEEEEec
Confidence 4689999877654 3456778888889999999999999 5557889999999999664 369999997
Q ss_pred CCe
Q 031964 118 GLR 120 (150)
Q Consensus 118 ~~~ 120 (150)
+..
T Consensus 218 ~~~ 220 (224)
T cd07388 218 ARK 220 (224)
T ss_pred Ccc
Confidence 654
No 16
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.40 E-value=1.7e-12 Score=91.40 Aligned_cols=74 Identities=24% Similarity=0.349 Sum_probs=58.3
Q ss_pred HHHHHHhhCC---CEEEEeCCCCCCCCCCCeeEEEECCEEEEEecCcccccCCC-------HHHHHHHHhhCCCcEEEEC
Q 031964 6 VHDYLKIICP---DLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGD-------LDSLAMLQRQLDVDILVTG 75 (150)
Q Consensus 6 v~~~l~~~~~---~~~~V~GN~D~~~~lp~~~~~~~~~~~i~~~HG~~~~~~~~-------~~~l~~~~~~~~~div~~G 75 (150)
..+.++++.. ++++|+||||. |+++|..+..+... .+.+.+.+++.++++++||
T Consensus 57 ~~~~~~~l~~~~~~~~~v~GNHD~----------------iv~~Hhp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~G 120 (144)
T cd07400 57 AREFLDALPAPLEPVLVVPGNHDV----------------IVVLHHPLVPPPGSGRERLLDAGDALKLLAEAGVDLVLHG 120 (144)
T ss_pred HHHHHHHccccCCcEEEeCCCCeE----------------EEEecCCCCCCCccccccCCCHHHHHHHHHHcCCCEEEEC
Confidence 3455555554 79999999997 99999887654322 2346777788899999999
Q ss_pred CCCCcceEE----ECCEEEEcCCC
Q 031964 76 HTHQFTAYK----HEGGVVINPGS 95 (150)
Q Consensus 76 HtH~~~~~~----~~~~~~iNpGS 95 (150)
|+|.+.... .++..++|+||
T Consensus 121 H~H~~~~~~~~~~~~~~~~~~aGs 144 (144)
T cd07400 121 HKHVPYVGNISNAGGGLVVIGAGT 144 (144)
T ss_pred CCCCcCeeeccCCCCCEEEEecCC
Confidence 999998877 67899999997
No 17
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.40 E-value=1.6e-12 Score=97.34 Aligned_cols=94 Identities=19% Similarity=0.194 Sum_probs=64.8
Q ss_pred cHHHHHHHHhhCCCEEEEeCCCCCC---------------------------------------CCCCCeeEEEECCEEE
Q 031964 3 FQEVHDYLKIICPDLHIIRGEYDEE---------------------------------------TRYPETKTLTIGQFKL 43 (150)
Q Consensus 3 ~~ev~~~l~~~~~~~~~V~GN~D~~---------------------------------------~~lp~~~~~~~~~~~i 43 (150)
+.++++.|++ .++++|+||||.. ..||....+..++.++
T Consensus 45 ~~~~~~~l~~--~~~~~v~GNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~ 122 (207)
T cd07424 45 SLACLELLLE--PWFHAVRGNHEQMAIDALRAEPLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETEGGKV 122 (207)
T ss_pred HHHHHHHHhc--CCEEEeECCChHHHHhHhhCCCcchhHHHhcCCeehhhcChHHHHHHHHHHHHhCCeEEEEEeCCCEE
Confidence 3578888876 3589999999954 1355555666777899
Q ss_pred EEecCcccccCC-C--------H----------HHHHHH-H-hhCCCcEEEECCCCCcceEEECCEEEEcCCCCCC
Q 031964 44 GLCHGHQVIPWG-D--------L----------DSLAML-Q-RQLDVDILVTGHTHQFTAYKHEGGVVINPGSATG 98 (150)
Q Consensus 44 ~~~HG~~~~~~~-~--------~----------~~l~~~-~-~~~~~div~~GHtH~~~~~~~~~~~~iNpGS~~~ 98 (150)
+++||++..... . + ..+... + ...++++++|||||.|.....++.++|||||++.
T Consensus 123 ~~vHag~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~iV~GHTh~~~~~~~~~~i~ID~Gsv~g 198 (207)
T cd07424 123 GIVHADYPSDDWSDGVGAVTLRPEDIEELLWSRTRIQKAQTQPIKGVDAVVHGHTPVKRPLRLGNVLYIDTGAVFD 198 (207)
T ss_pred EEECCCCCcchhhhhhhccccCcccceeeeeccchhhhcCccccCCCCEEEECCCCCCcceEECCEEEEECCCCCC
Confidence 999987532110 0 0 001110 1 1124689999999999999999999999999875
No 18
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.37 E-value=1.8e-12 Score=98.00 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=66.8
Q ss_pred cHHHHHHHHhhCCCEEEEeCCCCCC---------------------------------------CCCCCeeEEEECCEEE
Q 031964 3 FQEVHDYLKIICPDLHIIRGEYDEE---------------------------------------TRYPETKTLTIGQFKL 43 (150)
Q Consensus 3 ~~ev~~~l~~~~~~~~~V~GN~D~~---------------------------------------~~lp~~~~~~~~~~~i 43 (150)
+.++++.|++. .+++|+||||.. .+||....++.++.++
T Consensus 59 ~~~~l~~l~~~--~~~~v~GNHE~~~~~~~~~~~~~~~~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~ 136 (218)
T PRK09968 59 SLNVLRLLNQP--WFISVKGNHEAMALDAFETGDGNMWLASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKY 136 (218)
T ss_pred HHHHHHHHhhC--CcEEEECchHHHHHHHHhcCChhHHHHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcE
Confidence 56888888763 478999999962 2477777788889999
Q ss_pred EEecCcc-cccCC---C---------HHHHHHHHh-----hCCCcEEEECCCCCcceEEECCEEEEcCCCCC
Q 031964 44 GLCHGHQ-VIPWG---D---------LDSLAMLQR-----QLDVDILVTGHTHQFTAYKHEGGVVINPGSAT 97 (150)
Q Consensus 44 ~~~HG~~-~~~~~---~---------~~~l~~~~~-----~~~~div~~GHtH~~~~~~~~~~~~iNpGS~~ 97 (150)
+++||+. ..+.. . .+.+..... ..+.++++|||||.+.....++.++|||||+-
T Consensus 137 ~~vHAg~p~~~~~~~~~~~~~~~~w~r~~~~~~~~~~~~~~~~~~~vv~GHTh~~~~~~~~~~i~IDtGs~~ 208 (218)
T PRK09968 137 VIAHADYPGDEYDFGKEIAESELLWPVDRVQKSLNGELQQINGADYFIFGHMMFDNIQTFANQIYIDTGSPK 208 (218)
T ss_pred EEEeCCCCCchhhhccccchhhceeCcHHHhhCccccccccCCCCEEEECCCCcCcceeECCEEEEECCCCC
Confidence 9999884 21110 0 011111111 13568999999999999999999999999965
No 19
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.26 E-value=2.3e-11 Score=88.61 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=43.8
Q ss_pred CEEEEEecCcccccC---------CCHHHHHHHHhhCCCcEEEECCCCCcc-eEEECCEEEEcCC
Q 031964 40 QFKLGLCHGHQVIPW---------GDLDSLAMLQRQLDVDILVTGHTHQFT-AYKHEGGVVINPG 94 (150)
Q Consensus 40 ~~~i~~~HG~~~~~~---------~~~~~l~~~~~~~~~div~~GHtH~~~-~~~~~~~~~iNpG 94 (150)
..+|+++|..|..++ ...+.+.+++++.++++++|||+|.+. ....++++++|||
T Consensus 124 ~~~ilv~H~pp~~~~~d~~~~~~~~g~~~l~~li~~~~~~~~l~GH~H~~~~~~~~~~~~~~n~G 188 (188)
T cd07392 124 KNLILVTHAPPYGTAVDRVSGGFHVGSKAIRKFIEERQPLLCICGHIHESRGVDKIGNTLVVNPG 188 (188)
T ss_pred CCeEEEECCCCcCCcccccCCCCccCCHHHHHHHHHhCCcEEEEeccccccceeeeCCeEEecCC
Confidence 467999998886421 134567788888899999999999996 4478999999998
No 20
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=99.22 E-value=1.3e-10 Score=87.53 Aligned_cols=73 Identities=22% Similarity=0.302 Sum_probs=51.4
Q ss_pred CEEEEEecCccccc----CCCHHHHHHHHhhCCCcEEEECCCCCcc-eEEECCEEEEcCCCCCCCCCCCCCCCCCcEEEE
Q 031964 40 QFKLGLCHGHQVIP----WGDLDSLAMLQRQLDVDILVTGHTHQFT-AYKHEGGVVINPGSATGAFSSITYDVNPSFVLM 114 (150)
Q Consensus 40 ~~~i~~~HG~~~~~----~~~~~~l~~~~~~~~~div~~GHtH~~~-~~~~~~~~~iNpGS~~~~~~~~~~~~~~s~~il 114 (150)
-.+|+++|-.|... ..+++.+..+.+.+++++++|||.|... ....+.+++|||||+.. ..|++|
T Consensus 174 ~r~IlLfhtpPd~~kg~~h~GS~~V~dlIk~~~P~ivl~Ghihe~~~~e~lG~TlVVNPGsL~~----------G~yAvI 243 (255)
T PF14582_consen 174 YRKILLFHTPPDLHKGLIHVGSAAVRDLIKTYNPDIVLCGHIHESHGKESLGKTLVVNPGSLAE----------GDYAVI 243 (255)
T ss_dssp SEEEEEESS-BTBCTCTBTTSBHHHHHHHHHH--SEEEE-SSS-EE--EEETTEEEEE--BGGG----------TEEEEE
T ss_pred ccEEEEEecCCccCCCcccccHHHHHHHHHhcCCcEEEecccccchhhHHhCCEEEecCccccc----------CceeEE
Confidence 46899999776211 2355678888999999999999999864 56789999999999885 379999
Q ss_pred EEeCCeEE
Q 031964 115 DIDGLRVV 122 (150)
Q Consensus 115 ~~~~~~i~ 122 (150)
++....+.
T Consensus 244 ~l~~~~v~ 251 (255)
T PF14582_consen 244 DLEQDKVE 251 (255)
T ss_dssp ETTTTEEE
T ss_pred Eecccccc
Confidence 99887653
No 21
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=99.21 E-value=3.6e-11 Score=87.34 Aligned_cols=78 Identities=21% Similarity=0.122 Sum_probs=57.5
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCC------------CCCeeEEEECCEEEEEecCcccccCCCHHHHHHHHhhCCCcEEEE
Q 031964 7 HDYLKIICPDLHIIRGEYDEETR------------YPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVT 74 (150)
Q Consensus 7 ~~~l~~~~~~~~~V~GN~D~~~~------------lp~~~~~~~~~~~i~~~HG~~~~~~~~~~~l~~~~~~~~~div~~ 74 (150)
++.++++..++++|+||||.... +|....+++++.+++++|+...... ...++|++++
T Consensus 62 ~~~l~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~H~~~~~~~----------~~~~~d~vi~ 131 (168)
T cd07390 62 LELLSRLNGRKHLIKGNHDSSLERKLLAFLLKFESVLQAVRLKIGGRRVYLSHYPILEWN----------GLDRGSWNLH 131 (168)
T ss_pred HHHHHhCCCCeEEEeCCCCchhhhcccccccccceeeeEEEEEECCEEEEEEeCCcccCC----------CCCCCeEEEE
Confidence 56677776679999999997621 4666788999999999996432111 0357899999
Q ss_pred CCCCCcceEEECCEEEEcCCC
Q 031964 75 GHTHQFTAYKHEGGVVINPGS 95 (150)
Q Consensus 75 GHtH~~~~~~~~~~~~iNpGS 95 (150)
||||.+..... -...+|+|.
T Consensus 132 GHtH~~~~~~~-~~~~~n~~~ 151 (168)
T cd07390 132 GHIHSNSPDIG-PPRRINVGV 151 (168)
T ss_pred eeeCCCCCCCC-CCceEEEeE
Confidence 99999976531 146899986
No 22
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.12 E-value=1.6e-09 Score=82.21 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=45.5
Q ss_pred EEEEEecCcccccC---------CCHHHHHHHHhhC-CCcEEEECCCCCcceEEECCEEEEcCCCCCCCC
Q 031964 41 FKLGLCHGHQVIPW---------GDLDSLAMLQRQL-DVDILVTGHTHQFTAYKHEGGVVINPGSATGAF 100 (150)
Q Consensus 41 ~~i~~~HG~~~~~~---------~~~~~l~~~~~~~-~~div~~GHtH~~~~~~~~~~~~iNpGS~~~~~ 100 (150)
..|+++|..+.... ...+.+.+++.+. +++++++||+|.......+++.++|.||++.++
T Consensus 145 ~~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~~~g~~~~~~gs~~~~~ 214 (240)
T cd07402 145 PTLVFLHHPPFPVGIAWMDAIGLRNAEALAAVLARHPNVRAILCGHVHRPIDGSWGGIPLLTAPSTCHQF 214 (240)
T ss_pred CEEEEECCCCccCCchhhhhhhCCCHHHHHHHHhcCCCeeEEEECCcCchHHeEECCEEEEEcCcceeee
Confidence 45777776554221 1234566666777 899999999999988889999999999999885
No 23
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.09 E-value=2.2e-10 Score=86.55 Aligned_cols=93 Identities=16% Similarity=0.086 Sum_probs=64.2
Q ss_pred cHHHHHHHHhhCCCEEEEeCCCCCC---------------------------------------CCCCCeeEEEECCEEE
Q 031964 3 FQEVHDYLKIICPDLHIIRGEYDEE---------------------------------------TRYPETKTLTIGQFKL 43 (150)
Q Consensus 3 ~~ev~~~l~~~~~~~~~V~GN~D~~---------------------------------------~~lp~~~~~~~~~~~i 43 (150)
+.+|+++|++. .+++|+||||.. .+||....++.++.++
T Consensus 61 s~~vl~~l~~~--~~~~v~GNHE~~~l~~~~~~~~~~w~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~ 138 (218)
T PRK11439 61 SLRCLQLLEEH--WVRAVRGNHEQMALDALASQQMSLWLMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKH 138 (218)
T ss_pred HHHHHHHHHcC--CceEeeCchHHHHHHHHHCCccchhhhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCE
Confidence 67899999875 378999999932 1466666666777889
Q ss_pred EEecCc-ccccCC--C----------HHHHHHHHh---hCCCcEEEECCCCCcceEEECCEEEEcCCCCC
Q 031964 44 GLCHGH-QVIPWG--D----------LDSLAMLQR---QLDVDILVTGHTHQFTAYKHEGGVVINPGSAT 97 (150)
Q Consensus 44 ~~~HG~-~~~~~~--~----------~~~l~~~~~---~~~~div~~GHtH~~~~~~~~~~~~iNpGS~~ 97 (150)
+++|++ +..... . .+.+.+... ..+.+++++||||.+.....++.+.||+||+-
T Consensus 139 ~~vHAg~p~~~~~~~~~~~~~~~~w~r~~~~~~~~~~~~~~~~~vv~GHT~~~~~~~~~~~i~IDtGav~ 208 (218)
T PRK11439 139 VIAHADYPADVYEWQKDVDLHQVLWSRSRLGERQKGQGITGADHFWFGHTPLRHRVDIGNLHYIDTGAVF 208 (218)
T ss_pred EEEeCCCCCCchhhhccCCccceEEcChhhhhccccccccCCCEEEECCccCCCccccCCEEEEECCCCC
Confidence 999987 321100 0 011111111 11567899999999988888999999999965
No 24
>PRK04036 DNA polymerase II small subunit; Validated
Probab=99.07 E-value=4.4e-09 Score=88.49 Aligned_cols=94 Identities=23% Similarity=0.305 Sum_probs=65.4
Q ss_pred HHHHHHHhhC--CCEEEEeCCCCCCCC--------------CC--------CeeEEEECCEEEEEecCccccc------C
Q 031964 5 EVHDYLKIIC--PDLHIIRGEYDEETR--------------YP--------ETKTLTIGQFKLGLCHGHQVIP------W 54 (150)
Q Consensus 5 ev~~~l~~~~--~~~~~V~GN~D~~~~--------------lp--------~~~~~~~~~~~i~~~HG~~~~~------~ 54 (150)
++.++|+++. .++++++||||.... ++ ....++++|.+++++||..... .
T Consensus 319 ~l~~~L~~L~~~i~V~~ipGNHD~~~~~lPQ~~l~~~l~~~l~~~~v~~lsNP~~i~l~G~~iLl~HG~~idDl~~~i~~ 398 (504)
T PRK04036 319 AAAEYLKQIPEDIKIIISPGNHDAVRQAEPQPAFPEEIRSLFPEHNVTFVSNPALVNLHGVDVLIYHGRSIDDVISLIPG 398 (504)
T ss_pred HHHHHHHhhhcCCeEEEecCCCcchhhccCCCCccHHHHHhcCcCCeEEecCCeEEEECCEEEEEECCCCHHHHHhhccc
Confidence 4566777664 468999999998521 22 1235678999999999987421 1
Q ss_pred ---CCH-HHHHHHHh------------------------hCCCcEEEECCCCCcceEEECCEEEEcCCCCCC
Q 031964 55 ---GDL-DSLAMLQR------------------------QLDVDILVTGHTHQFTAYKHEGGVVINPGSATG 98 (150)
Q Consensus 55 ---~~~-~~l~~~~~------------------------~~~~div~~GHtH~~~~~~~~~~~~iNpGS~~~ 98 (150)
..+ +.+..++. ..-+|++++||+|.+.....+++++|||||+..
T Consensus 399 ~s~~~p~~~m~~~l~~rHlaPt~p~~~~~~p~~~D~lvi~~~Pdv~~~GH~H~~~~~~~~g~~~IN~gsf~~ 470 (504)
T PRK04036 399 ASYEKPGKAMEELLKRRHLAPIYGGRTPIAPEKEDYLVIDEVPDIFHTGHVHINGYGKYRGVLLINSGTWQA 470 (504)
T ss_pred ccccCHHHHHHHHHHhcccCCCCCCCEEeCcCCCCCEEEecCCCEEEeCCCCccceEEECCEEEEECCcccc
Confidence 111 22333322 023589999999999999999999999999874
No 25
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.05 E-value=9e-09 Score=79.40 Aligned_cols=65 Identities=12% Similarity=0.173 Sum_probs=52.5
Q ss_pred HHHHHHhhCCCcEEEECCCCCcceEEECCEEEEcCCCCCCCCCCCCCCCCCcEEEEEEeCCeEEEEEEE
Q 031964 59 SLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYE 127 (150)
Q Consensus 59 ~l~~~~~~~~~div~~GHtH~~~~~~~~~~~~iNpGS~~~~~~~~~~~~~~s~~il~~~~~~i~v~~~~ 127 (150)
.+.+++++.++++++|||+|.......+++.++..|+.|.+. ....+.|.+++++++.+..++|.
T Consensus 197 ~l~~ll~~~~V~~v~~GH~H~~~~~~~~g~~~~~~~~~~~~~----~~~~~g~~~~~v~~~~~~~~~~~ 261 (262)
T cd07395 197 PLLDKFKKAGVKAVFSGHYHRNAGGRYGGLEMVVTSAIGAQL----GNDKSGLRIVKVTEDKIVHEYYS 261 (262)
T ss_pred HHHHHHHhcCceEEEECccccCCceEECCEEEEEcCceeccc----CCCCCCcEEEEECCCceeeeeee
Confidence 466677778999999999999988888899888888888764 23468999999998888766665
No 26
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.02 E-value=3.2e-09 Score=82.68 Aligned_cols=89 Identities=22% Similarity=0.337 Sum_probs=56.1
Q ss_pred EEEEecCccccc---C------CCHHHHHHHHhhC-CCcEEEECCCCCcceEEECCEEEEcCCCCCCCCCCCC-----CC
Q 031964 42 KLGLCHGHQVIP---W------GDLDSLAMLQRQL-DVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSIT-----YD 106 (150)
Q Consensus 42 ~i~~~HG~~~~~---~------~~~~~l~~~~~~~-~~div~~GHtH~~~~~~~~~~~~iNpGS~~~~~~~~~-----~~ 106 (150)
.++++|.+|... + ...+.+.+++++. +++++++||+|.+.....+|+.++..+|++.+..+.. ..
T Consensus 159 ~vv~~hH~P~~~~~~~~d~~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~~~~~~~gi~~~~~ps~~~q~~~~~~~~~~~~ 238 (275)
T PRK11148 159 TLVLLHHHPLPAGCAWLDQHSLRNAHELAEVLAKFPNVKAILCGHIHQELDLDWNGRRLLATPSTCVQFKPHCTNFTLDT 238 (275)
T ss_pred eEEEEcCCCCCCCcchhhccCCCCHHHHHHHHhcCCCceEEEecccChHHhceECCEEEEEcCCCcCCcCCCCCcccccc
Confidence 467777666421 1 1234677777775 7899999999999887888988765555554321111 12
Q ss_pred CCCcEEEEEEeCC-eEEEEEEEeeC
Q 031964 107 VNPSFVLMDIDGL-RVVVYVYELID 130 (150)
Q Consensus 107 ~~~s~~il~~~~~-~i~v~~~~~~~ 130 (150)
..+.|.++++.++ .+.....++..
T Consensus 239 ~~~g~~~~~l~~~g~~~~~~~~~~~ 263 (275)
T PRK11148 239 VAPGWRELELHADGSLETEVHRLAD 263 (275)
T ss_pred CCCcEEEEEEcCCCcEEEEEEEcCC
Confidence 3368888888644 45555545544
No 27
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.02 E-value=1.3e-09 Score=83.16 Aligned_cols=94 Identities=17% Similarity=0.148 Sum_probs=62.2
Q ss_pred cHHHHHHHHhhC--CCEEEEeCCCCCC--------------------------------------CCCCCeeEEEECCEE
Q 031964 3 FQEVHDYLKIIC--PDLHIIRGEYDEE--------------------------------------TRYPETKTLTIGQFK 42 (150)
Q Consensus 3 ~~ev~~~l~~~~--~~~~~V~GN~D~~--------------------------------------~~lp~~~~~~~~~~~ 42 (150)
+.+|++.|+++. .++++|+||||.. ..+|... .+++.+
T Consensus 54 s~evl~~l~~l~~~~~~~~v~GNHE~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~~lP~~~--~~~~~~ 131 (234)
T cd07423 54 SPEVLRLVMSMVAAGAALCVPGNHDNKLYRKLQGRNVKITHGLEETVAQLEAESEEFKEEVIEFYESLPSHL--VLDEGK 131 (234)
T ss_pred HHHHHHHHHHHhhCCcEEEEECCcHHHHHHHhcCCCccccCcccchHHHHhhccHHHHHHHHHHHHhCCcEE--EeCCCc
Confidence 678999998863 3589999999963 1344432 345568
Q ss_pred EEEecCcccccC-CCH-HHH---------------------HHHHh-hCCCcEEEECCCCCcceEEECCEEEEcCCCCCC
Q 031964 43 LGLCHGHQVIPW-GDL-DSL---------------------AMLQR-QLDVDILVTGHTHQFTAYKHEGGVVINPGSATG 98 (150)
Q Consensus 43 i~~~HG~~~~~~-~~~-~~l---------------------~~~~~-~~~~div~~GHtH~~~~~~~~~~~~iNpGS~~~ 98 (150)
++++||...... ... ..+ ..+.. ..+.++++|||||.+.....++.+.||+||+-.
T Consensus 132 ~~~vHag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~GHt~~~~~~~~~~~i~IDtGav~g 211 (234)
T cd07423 132 LVVAHAGIKEEMIGRDSKRVRSFALYGDTTGETDEFGLPVRRDWAKEYRGDALVVYGHTPVPEPRWLNNTINIDTGCVFG 211 (234)
T ss_pred EEEEeCCCChHhccccchhheeeeecccccCCcCCCCCccchhhHhhCCCCeEEEECCCCCccceEeCCEEEEECCCCCC
Confidence 999998843211 000 000 00000 124579999999999888889999999999753
No 28
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=98.92 E-value=2.9e-09 Score=81.56 Aligned_cols=93 Identities=22% Similarity=0.246 Sum_probs=62.3
Q ss_pred HHHHHHhhC--CCEEEEeCCCCCCCC-C---------------------CCeeEEEECCEEEEEecCccccc------CC
Q 031964 6 VHDYLKIIC--PDLHIIRGEYDEETR-Y---------------------PETKTLTIGQFKLGLCHGHQVIP------WG 55 (150)
Q Consensus 6 v~~~l~~~~--~~~~~V~GN~D~~~~-l---------------------p~~~~~~~~~~~i~~~HG~~~~~------~~ 55 (150)
+.+.|+++. .++++++||||.... + +....++++|.+|+++||..... ..
T Consensus 71 ~~~~l~~L~~~~~v~~ipGNHD~~~~~~pq~~l~~~l~~~~~~~~v~~l~Np~~~~~~g~~i~~~~G~~~~d~~~~~~~~ 150 (243)
T cd07386 71 AAEYLSDVPSHIKIIIIPGNHDAVRQAEPQPALPEEIRKLFLPGNVEFVSNPALVKIHGVDVLIYHGRSIDDVVKLIPGL 150 (243)
T ss_pred HHHHHHhcccCCeEEEeCCCCCcccccCCCCCccHHHHhhcCCCceEEeCCCCEEEECCEEEEEECCCCHHHHHHhCCCC
Confidence 455666654 568999999998521 1 12235678999999999975420 11
Q ss_pred ---CHHH-HHH------------------------HHhhCCCcEEEECCCCCcceEEECCEEEEcCCCCCC
Q 031964 56 ---DLDS-LAM------------------------LQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATG 98 (150)
Q Consensus 56 ---~~~~-l~~------------------------~~~~~~~div~~GHtH~~~~~~~~~~~~iNpGS~~~ 98 (150)
.+.. ++. +.....++++++||+|.+.....++++++||||+..
T Consensus 151 ~~~~~~~~~~~~l~~~hl~P~~~~~~~~~~~~~~~~~~~~~p~vii~Gh~h~~~~~~~~~~~~vn~Gsf~~ 221 (243)
T cd07386 151 SYDKPGKAMEELLKRRHLAPIYGGRTPIAPEPEDYLVIDEVPDILHTGHVHVYGVGVYRGVLLVNSGTWQS 221 (243)
T ss_pred CcccHHHHHHHHHhhcccCCCCCCCEeeCCCCCCCEEecCCCCEEEECCCCchHhEEECCEEEEECCCCcC
Confidence 1111 110 001124589999999999998899999999999874
No 29
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=98.87 E-value=2.6e-09 Score=79.84 Aligned_cols=59 Identities=22% Similarity=0.240 Sum_probs=40.9
Q ss_pred CEEEEEecCcccccCCCH----HHHHHHHhhCCCcEEEECCCCCcceEEECCEEEEcCCCCCC
Q 031964 40 QFKLGLCHGHQVIPWGDL----DSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATG 98 (150)
Q Consensus 40 ~~~i~~~HG~~~~~~~~~----~~l~~~~~~~~~div~~GHtH~~~~~~~~~~~~iNpGS~~~ 98 (150)
..+|+++|+......... +.....+...++|++++||+|.+......+..+++|||+..
T Consensus 157 ~~~Il~~H~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~~~~~~~~~~~~ypGS~~~ 219 (223)
T cd00840 157 DFNILLLHGGVAGAGPSDSERAPFVPEALLPAGFDYVALGHIHRPQIILGGGPPIVYPGSPEG 219 (223)
T ss_pred CcEEEEEeeeeecCCCCcccccccCcHhhcCcCCCEEECCCcccCeeecCCCceEEeCCCccc
Confidence 457888887643221110 11222234678999999999999877778899999999875
No 30
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=98.85 E-value=4.1e-08 Score=74.81 Aligned_cols=57 Identities=23% Similarity=0.142 Sum_probs=42.2
Q ss_pred EEEEecCcccccCCCHHHHHHHHhhCCCcEEEECCCCCcce-----EEECCEEEEcCCCCCC
Q 031964 42 KLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTA-----YKHEGGVVINPGSATG 98 (150)
Q Consensus 42 ~i~~~HG~~~~~~~~~~~l~~~~~~~~~div~~GHtH~~~~-----~~~~~~~~iNpGS~~~ 98 (150)
+|+++|+.++........+.+.+++.++|++++||+|.+.. ...+|+.+.++.|...
T Consensus 167 ~i~~~H~p~~~~~~~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~gi~~~~~~~~~~ 228 (232)
T cd07393 167 KIVMLHYPPANENGDDSPISKLIEEYGVDICVYGHLHGVGRDRAINGERGGIRYQLVSADYL 228 (232)
T ss_pred EEEEECCCCcCCCCCHHHHHHHHHHcCCCEEEECCCCCCcccccccceECCEEEEEEcchhc
Confidence 79999988765444455566666777999999999998754 3478888877766544
No 31
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=98.81 E-value=2.3e-08 Score=72.00 Aligned_cols=80 Identities=15% Similarity=0.087 Sum_probs=51.8
Q ss_pred CCCEEEEeCCCCCC---------CCCCC-------eeEEEECCEEEEEecCccccc---C----C--C---HHHHHHHHh
Q 031964 14 CPDLHIIRGEYDEE---------TRYPE-------TKTLTIGQFKLGLCHGHQVIP---W----G--D---LDSLAMLQR 65 (150)
Q Consensus 14 ~~~~~~V~GN~D~~---------~~lp~-------~~~~~~~~~~i~~~HG~~~~~---~----~--~---~~~l~~~~~ 65 (150)
..++++|+||||.. .+++. ...-++.+..|+++|..|... + . . .+.+.++++
T Consensus 55 ~~~v~~v~GNHD~~~~~~G~~~w~~~~~~~~~~~~~~~~d~~~~~vv~~HhpP~~~~~~~~~~~~~~~~~~~~~l~~~~~ 134 (166)
T cd07404 55 FEPVIYVPGNHEFYVRIIGTTLWSDISLFGEAAARMRMNDFRGKTVVVTHHAPSPLSLAPQYGDSLVNAAFAVDLDDLIL 134 (166)
T ss_pred CccEEEeCCCcceEEEEEeeecccccCccchHHHHhCCCCCCCCEEEEeCCCCCccccCccccCCCcchhhhhccHhHHh
Confidence 35799999999974 22211 011123356799999766521 1 0 0 112445556
Q ss_pred hCCCcEEEECCCCCcceEEECCEE-EEcC
Q 031964 66 QLDVDILVTGHTHQFTAYKHEGGV-VINP 93 (150)
Q Consensus 66 ~~~~div~~GHtH~~~~~~~~~~~-~iNp 93 (150)
..++++++|||+|.+.....+++. ++||
T Consensus 135 ~~~v~~~i~GH~H~~~~~~~~g~~~~~np 163 (166)
T cd07404 135 ADPIDLWIHGHTHFNFDYRIGGTRVLSNQ 163 (166)
T ss_pred hcCCCEEEECCccccceEEECCEEEEecC
Confidence 678999999999999888888865 5777
No 32
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.77 E-value=3.4e-08 Score=66.65 Aligned_cols=68 Identities=29% Similarity=0.527 Sum_probs=51.3
Q ss_pred HHhhCCCEEEEeCCCCCCCCCCCeeEEEECCEEEEEecCcccccCCC--------HHHHHHHHhhCCCcEEEECCCCCcc
Q 031964 10 LKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGD--------LDSLAMLQRQLDVDILVTGHTHQFT 81 (150)
Q Consensus 10 l~~~~~~~~~V~GN~D~~~~lp~~~~~~~~~~~i~~~HG~~~~~~~~--------~~~l~~~~~~~~~div~~GHtH~~~ 81 (150)
++....+++.+.|||| |+++|..+...... ...+...+...+++++++||+|.+.
T Consensus 54 ~~~~~~~~~~~~GNHD-----------------i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~ 116 (131)
T cd00838 54 LLLLGIPVYVVPGNHD-----------------ILLTHGPPYDPLDELSPDEDPGSEALLELLEKYGVDLVLSGHTHVYE 116 (131)
T ss_pred hhcCCCCEEEeCCCce-----------------EEEeccCCCCCchhhcccchhhHHHHHHHHHHhCCCEEEeCCeeccc
Confidence 4455567999999999 99999877643211 2345556667899999999999987
Q ss_pred eEE--ECCEEEEcCC
Q 031964 82 AYK--HEGGVVINPG 94 (150)
Q Consensus 82 ~~~--~~~~~~iNpG 94 (150)
... ..+..++++|
T Consensus 117 ~~~~~~~~~~~v~~g 131 (131)
T cd00838 117 RREPDGGGTLYINPG 131 (131)
T ss_pred cccCCCCceEEecCC
Confidence 665 5678888876
No 33
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=98.72 E-value=1.1e-07 Score=72.45 Aligned_cols=67 Identities=30% Similarity=0.610 Sum_probs=50.2
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCC---CCCCCeeEEEECCEEEEEecCcccccCCCHHHHHHHHhhCCCcEEEECCCCCc
Q 031964 4 QEVHDYLKIICPDLHIIRGEYDEE---TRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQF 80 (150)
Q Consensus 4 ~ev~~~l~~~~~~~~~V~GN~D~~---~~lp~~~~~~~~~~~i~~~HG~~~~~~~~~~~l~~~~~~~~~div~~GHtH~~ 80 (150)
+++.++++++..++++|+||||.. ..++....+.++++ +++||+.. + +. ...++|++++||+|.+
T Consensus 79 ~~~~~~l~~~~~~v~~V~GNHD~~~~~~~~~~~~~~~lg~~--~l~HGh~~-~--~~-------~~~~~d~~I~GH~HP~ 146 (225)
T TIGR00024 79 RFIREFIEVTFRDLILIRGNHDALIPYIGLSGEESIRIGKY--LIFHGHAV-P--DE-------EDLDAKVLIFGHEHPA 146 (225)
T ss_pred HHHHHHHHhcCCcEEEECCCCCCccccCCCCccceEEECCE--EEEeCCCC-C--Cc-------ccccCCEEEECCCCce
Confidence 456678887777899999999974 35677778888885 99999863 2 11 1236789999999976
Q ss_pred ce
Q 031964 81 TA 82 (150)
Q Consensus 81 ~~ 82 (150)
..
T Consensus 147 i~ 148 (225)
T TIGR00024 147 VK 148 (225)
T ss_pred EE
Confidence 43
No 34
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=98.71 E-value=4.6e-08 Score=72.62 Aligned_cols=94 Identities=17% Similarity=0.076 Sum_probs=58.4
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCCCCCee---------EE----EECCEEEEEecCccccc---CC----------C---
Q 031964 6 VHDYLKIICPDLHIIRGEYDEETRYPETK---------TL----TIGQFKLGLCHGHQVIP---WG----------D--- 56 (150)
Q Consensus 6 v~~~l~~~~~~~~~V~GN~D~~~~lp~~~---------~~----~~~~~~i~~~HG~~~~~---~~----------~--- 56 (150)
.++.+.+...++++++||||....+.... .+ ......++++|-.+... +. +
T Consensus 68 ~~~~l~~~~~p~~~~~GNHD~~g~l~~~ql~wL~~~l~~~~~~~~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~~~ 147 (199)
T cd07383 68 AVSPMIDRKIPWAATFGNHDGYDWIRPSQIEWFKETSAALKKKYGKPIPSLAFFHIPLPEYREVWEGKGKVPGINNEKVC 147 (199)
T ss_pred HHHHHHHcCCCEEEECccCCCCCCCCHHHHHHHHHHHHHHhhccCCCCcceEEEecChHHHHhhhcccCCCCccCCcccC
Confidence 34444444568999999999642222111 01 01235689999543211 11 1
Q ss_pred -----HHHHHHHHhhCCCcEEEECCCCCcceEEECCEEEEcCCCCCCC
Q 031964 57 -----LDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGA 99 (150)
Q Consensus 57 -----~~~l~~~~~~~~~div~~GHtH~~~~~~~~~~~~iNpGS~~~~ 99 (150)
.+.+..+.+..++++++|||+|........+.+.+|||+.+..
T Consensus 148 ~~~~~~~~~~~~~~~~~v~~v~~GH~H~~~~~~~~~~i~l~~g~~~g~ 195 (199)
T cd07383 148 CPKINSGLFKALLERGDVKGVFCGHDHGNDFCGRYNGIWLCYGRGTGY 195 (199)
T ss_pred CCcCCcHHHHHHHHcCCeEEEEeCCCCCcceecccCCEEEeCCCCCCC
Confidence 1223445566789999999999976666667778999998753
No 35
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=98.69 E-value=3.3e-07 Score=75.27 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=54.9
Q ss_pred hCCCcEEEECCCCCcceEE----ECCEEEEcCCCCCC-CCCCCCCCCCCcEEEEEEeCCeEEEEEEEeeC-CeEEEEEEE
Q 031964 66 QLDVDILVTGHTHQFTAYK----HEGGVVINPGSATG-AFSSITYDVNPSFVLMDIDGLRVVVYVYELID-GEVKVDKID 139 (150)
Q Consensus 66 ~~~~div~~GHtH~~~~~~----~~~~~~iNpGS~~~-~~~~~~~~~~~s~~il~~~~~~i~v~~~~~~~-~~~~~~~~~ 139 (150)
...+|+++.||.|.+.... .++..+++|||.-. .+.+ ....+.+|.+++++++.+.++...+.. -.+...++.
T Consensus 226 p~~fDYValGHiH~~~~~p~~~~~~~~~V~ypGS~v~tSf~e-~E~~~Kgv~lVeI~~~~~~~~~IpL~~vRpf~~~~i~ 304 (405)
T TIGR00583 226 PDFFDLVIWGHEHECLPDPVYNPSDGFYVLQPGSTVATSLTP-GEALPKHVFILNIKGRKFASKPIPLQTVRPFVMKEIL 304 (405)
T ss_pred hccCcEEEecccccccccccccCCCCceEEECCCcccccccc-cccCCCEEEEEEEcCCeeEEEEeeCCCcccEEEEEEE
Confidence 3579999999999975432 23668999999543 2211 122567899999998889999998885 557677776
Q ss_pred Eecc
Q 031964 140 FKKT 143 (150)
Q Consensus 140 ~~~~ 143 (150)
++-.
T Consensus 305 l~~~ 308 (405)
T TIGR00583 305 LDKV 308 (405)
T ss_pred hhhc
Confidence 6543
No 36
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=98.67 E-value=1.7e-06 Score=67.61 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=52.8
Q ss_pred HHHHHHhhCCCcEEEECCCCCcceEE----------------ECCEEEEcCCCCCCCCCCCC-----------CCCCCcE
Q 031964 59 SLAMLQRQLDVDILVTGHTHQFTAYK----------------HEGGVVINPGSATGAFSSIT-----------YDVNPSF 111 (150)
Q Consensus 59 ~l~~~~~~~~~div~~GHtH~~~~~~----------------~~~~~~iNpGS~~~~~~~~~-----------~~~~~s~ 111 (150)
.+..++.+.+++++++||+|...... .+++.+|-.|+.|.+..... ......|
T Consensus 184 ~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~~~~~~~~~~~g~~yiv~G~~G~~~~~~~~~~~~~~~~~~~~~~~g~ 263 (294)
T cd00839 184 ALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVVGDCNPYSNPKGPVHIVIGAGGNDEGLDPFSAPPPAWSAFRESDYGF 263 (294)
T ss_pred HHHHHHHHhCCCEEEEccceeeEeechhhCCEeccccccccCCCccEEEEECCCccccCcCcccCCCCCceEEEeccCCE
Confidence 45567778899999999999754322 15788898888887643211 1233678
Q ss_pred EEEEEeCC-eEEEEEEEeeCCeE
Q 031964 112 VLMDIDGL-RVVVYVYELIDGEV 133 (150)
Q Consensus 112 ~il~~~~~-~i~v~~~~~~~~~~ 133 (150)
++|++.++ .+..++++..++++
T Consensus 264 ~~~~~~~~t~l~~~~~~~~~g~v 286 (294)
T cd00839 264 GRLTVHNSTHLHFEWIRNDDGVV 286 (294)
T ss_pred EEEEEEecCeEEEEEEECCCCeE
Confidence 89998877 68888887776654
No 37
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=98.66 E-value=7.9e-08 Score=68.69 Aligned_cols=80 Identities=15% Similarity=0.049 Sum_probs=52.8
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCC---------CCCCeeEEEECCEEEEEecCcccccCCCHHHHHHHHhhCCCcEEEE
Q 031964 4 QEVHDYLKIICPDLHIIRGEYDEET---------RYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVT 74 (150)
Q Consensus 4 ~ev~~~l~~~~~~~~~V~GN~D~~~---------~lp~~~~~~~~~~~i~~~HG~~~~~~~~~~~l~~~~~~~~~div~~ 74 (150)
.+..+.++.+..+.+.|+||||..- .+...++++.+|.+++++|-....+....+..+..-...++++++.
T Consensus 63 ~~a~~IlerLnGrkhlv~GNhDk~~~~~~~~~~~svq~f~~ie~dg~~~~LsHyP~~~~~~~~~~~r~~y~~~~~~llIH 142 (186)
T COG4186 63 RAAGLILERLNGRKHLVPGNHDKCHPMYRHAYFDSVQAFQRIEWDGEDVYLSHYPRPGQDHPGMESRFDYLRLRVPLLIH 142 (186)
T ss_pred hHHHHHHHHcCCcEEEeeCCCCCCcccccchhhHHHHHHHheeECCeEEEEEeCCCCCCCCcchhhhHHHHhccCCeEEe
Confidence 3455667777777899999999862 1234568899999999999433221111111222223458999999
Q ss_pred CCCCCcceE
Q 031964 75 GHTHQFTAY 83 (150)
Q Consensus 75 GHtH~~~~~ 83 (150)
||.|-++..
T Consensus 143 GH~H~~~~k 151 (186)
T COG4186 143 GHLHSQFPK 151 (186)
T ss_pred ccccccccC
Confidence 999986544
No 38
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.63 E-value=1.2e-06 Score=68.02 Aligned_cols=58 Identities=14% Similarity=0.096 Sum_probs=45.0
Q ss_pred HHHHHHhh-CCCcEEEECCCCCcceEEECCEEEEcCCCCCCCCCCCCCCCCCcEEEEEEeCCeE
Q 031964 59 SLAMLQRQ-LDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRV 121 (150)
Q Consensus 59 ~l~~~~~~-~~~div~~GHtH~~~~~~~~~~~~iNpGS~~~~~~~~~~~~~~s~~il~~~~~~i 121 (150)
.+.+++++ .+++++++||+|.......+|+.++..||++.. +...+.|+++.+-++.+
T Consensus 206 ~~~~ll~~~~~V~~v~~GH~H~~~~~~~~gi~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~ 264 (267)
T cd07396 206 EVLSILRAYGCVKACISGHDHEGGYAQRHGIHFLTLEGMVET-----PPESNAFGVVIVYEDRL 264 (267)
T ss_pred HHHHHHHhCCCEEEEEcCCcCCCCccccCCeeEEEechhhcC-----CCCCCceEEEEEeCCce
Confidence 45556666 478999999999998888899988888887763 34567899998877653
No 39
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=98.62 E-value=1.3e-07 Score=71.09 Aligned_cols=89 Identities=21% Similarity=0.255 Sum_probs=57.2
Q ss_pred cHHHHHHHHhhC-------CCEEEEeCCCCCCC--------------------------------------CCCCeeEEE
Q 031964 3 FQEVHDYLKIIC-------PDLHIIRGEYDEET--------------------------------------RYPETKTLT 37 (150)
Q Consensus 3 ~~ev~~~l~~~~-------~~~~~V~GN~D~~~--------------------------------------~lp~~~~~~ 37 (150)
+.++++.|+++. .++++|+||||... ++|. .+.
T Consensus 49 ~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~--~~~ 126 (208)
T cd07425 49 VIEILWLLYKLEQEAAKAGGKVHFLLGNHELMNLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPV--IVK 126 (208)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHHHHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCe--EEE
Confidence 467888888774 35899999999650 1221 223
Q ss_pred ECCEEEEEecCcccccCC-----CH-------HHHHHHHhhCCCcEEEECCCCCcceE--EECCEEE-EcCCC
Q 031964 38 IGQFKLGLCHGHQVIPWG-----DL-------DSLAMLQRQLDVDILVTGHTHQFTAY--KHEGGVV-INPGS 95 (150)
Q Consensus 38 ~~~~~i~~~HG~~~~~~~-----~~-------~~l~~~~~~~~~div~~GHtH~~~~~--~~~~~~~-iNpGS 95 (150)
++ +++++||++...|. .. ..+.+.++..+.+++++||||.+... ..++.++ |-.|.
T Consensus 127 ~~--~~~fvHag~~~~w~r~y~~~~~~~~~~~~~~~~~l~~~~~~~iv~GHTh~~~~~~~~~~g~~i~ID~g~ 197 (208)
T cd07425 127 VN--DTLFVHGGLGPLWYRGYSKETSDKECAAAHLDKVLERLGAKRMVVGHTPQEGGIVTFCGGKVIRIDVGM 197 (208)
T ss_pred EC--CEEEEeCCcHHHHhhHhhhhhhhccchHHHHHHHHHHcCCCeEEEcCeeeecCceEEECCEEEEEeCCc
Confidence 43 47889998743221 00 13556667778999999999998644 3444443 56654
No 40
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.56 E-value=1.7e-07 Score=71.85 Aligned_cols=25 Identities=12% Similarity=0.005 Sum_probs=20.2
Q ss_pred cHHHHHHHHhhCCCEEEEeCCCCCC
Q 031964 3 FQEVHDYLKIICPDLHIIRGEYDEE 27 (150)
Q Consensus 3 ~~ev~~~l~~~~~~~~~V~GN~D~~ 27 (150)
+.++++.|.++..++++|+||||.+
T Consensus 39 ~~~~~~~l~~l~~p~~~V~GNHD~~ 63 (238)
T cd07397 39 SVQLVRAISSLPLPKAVILGNHDAW 63 (238)
T ss_pred hHHHHHHHHhCCCCeEEEcCCCccc
Confidence 3567788888766799999999975
No 41
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=98.49 E-value=2e-07 Score=67.78 Aligned_cols=61 Identities=23% Similarity=0.276 Sum_probs=39.2
Q ss_pred hCCCEEEEeCCCCCCCC-C---CCee-EEEECCEEEEEecCcccccCCCHHHHHHHHhhCCCcEEEECCCCCcceEEEC
Q 031964 13 ICPDLHIIRGEYDEETR-Y---PETK-TLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHE 86 (150)
Q Consensus 13 ~~~~~~~V~GN~D~~~~-l---p~~~-~~~~~~~~i~~~HG~~~~~~~~~~~l~~~~~~~~~div~~GHtH~~~~~~~~ 86 (150)
...++++|+||||.... + +... .-.+...+++++||+...+. .+.|++++||+| |.....+
T Consensus 74 ~~~~v~~i~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~HG~~~~~~------------~~~~~~i~GH~H-P~~~~~~ 139 (172)
T cd07391 74 KDVDVILIRGNHDGGLPEILKDLNVEVVEGLLLGGFLFFHGHKPPPP------------LDAELVIIGHEH-PAIRLRD 139 (172)
T ss_pred CCCeEEEEcccCccchhhhhhcCcEeecCCEEECCEEEEeCCCCCCc------------CCCCEEEEccCC-CcEEEEc
Confidence 34579999999998632 1 1111 11222357999999854210 467899999999 7665443
No 42
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=98.43 E-value=4.4e-06 Score=64.75 Aligned_cols=89 Identities=21% Similarity=0.344 Sum_probs=61.8
Q ss_pred EEEEEecCcccccC--C----CHHHHHHHHhhCCCcEEEECCCCCcceEEEC--CEEEEcCCCCCCCCCCCC--------
Q 031964 41 FKLGLCHGHQVIPW--G----DLDSLAMLQRQLDVDILVTGHTHQFTAYKHE--GGVVINPGSATGAFSSIT-------- 104 (150)
Q Consensus 41 ~~i~~~HG~~~~~~--~----~~~~l~~~~~~~~~div~~GHtH~~~~~~~~--~~~~iNpGS~~~~~~~~~-------- 104 (150)
.+|+++|..++... . ..+.+.+++++.+++++++||+|.......+ ++.++..|+.+.+.....
T Consensus 168 ~~iv~~H~P~~~~~~~~~~~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~ 247 (277)
T cd07378 168 WKIVVGHHPIYSSGEHGPTSCLVDRLLPLLKKYKVDAYLSGHDHNLQHIKDDGSGTSFVVSGAGSKARPSVKHIDKVPQF 247 (277)
T ss_pred eEEEEeCccceeCCCCCCcHHHHHHHHHHHHHcCCCEEEeCCcccceeeecCCCCcEEEEeCCCcccCCCCCccCccccc
Confidence 57889985543211 1 1234666777889999999999998766666 888999998876532211
Q ss_pred ----CCCCCcEEEEEEeCCeEEEEEEEee
Q 031964 105 ----YDVNPSFVLMDIDGLRVVVYVYELI 129 (150)
Q Consensus 105 ----~~~~~s~~il~~~~~~i~v~~~~~~ 129 (150)
......|+++++.++++.+++++.+
T Consensus 248 ~~~~~~~~~Gy~~i~v~~~~l~~~~~~~~ 276 (277)
T cd07378 248 FSGFTSSGGGFAYLELTKEELTVRFYDAD 276 (277)
T ss_pred ccccccCCCCEEEEEEecCEEEEEEECCC
Confidence 1133689999999998887776543
No 43
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=98.31 E-value=8.6e-07 Score=61.41 Aligned_cols=43 Identities=23% Similarity=0.407 Sum_probs=31.9
Q ss_pred ECCEEEEEecCcccccCCC----------HHHHHHHHhhCCCcEEEECCCCCc
Q 031964 38 IGQFKLGLCHGHQVIPWGD----------LDSLAMLQRQLDVDILVTGHTHQF 80 (150)
Q Consensus 38 ~~~~~i~~~HG~~~~~~~~----------~~~l~~~~~~~~~div~~GHtH~~ 80 (150)
-...+|+++|..+...... .+.+..+....+++++++||+|.+
T Consensus 148 ~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 148 NDDPVIVFTHHPPYSSSSDSSSYGNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp EESEEEEEESSSSSTTSSSTHHHSSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred cccceeEEEecCCCCccccccccchhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 4567899999877643221 234666778889999999999975
No 44
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=98.30 E-value=7.6e-06 Score=63.77 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=15.8
Q ss_pred HHHHHHhhC--CCEEEEeCCCCCC
Q 031964 6 VHDYLKIIC--PDLHIIRGEYDEE 27 (150)
Q Consensus 6 v~~~l~~~~--~~~~~V~GN~D~~ 27 (150)
+.+.|+++. .++++|.||||+.
T Consensus 102 ~~~~L~~L~~~~pv~~V~GNHD~~ 125 (271)
T PRK11340 102 FSDVLSPLAECAPTFACFGNHDRP 125 (271)
T ss_pred HHHHHHHHhhcCCEEEecCCCCcc
Confidence 445555554 4699999999974
No 45
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=98.21 E-value=5.4e-06 Score=62.43 Aligned_cols=109 Identities=13% Similarity=0.051 Sum_probs=60.9
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCCCCC----e------eEE-EE-CCEEEEEecCcccccC--C-----------CHHH
Q 031964 5 EVHDYLKIICPDLHIIRGEYDEETRYPE----T------KTL-TI-GQFKLGLCHGHQVIPW--G-----------DLDS 59 (150)
Q Consensus 5 ev~~~l~~~~~~~~~V~GN~D~~~~lp~----~------~~~-~~-~~~~i~~~HG~~~~~~--~-----------~~~~ 59 (150)
++++.|++...++++++||||....+.. . ..+ +. +...|+++|..+.... . ..+.
T Consensus 60 ~~~~~l~~~~~p~~~~~GNHD~~~~ld~~~~~~ql~WL~~~L~~~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~ 139 (214)
T cd07399 60 KAFARLDKAGIPYSVLAGNHDLVLALEFGPRDEVLQWANEVLKKHPDRPAILTTHAYLNCDDSRPDSIDYDSDVNDGQQI 139 (214)
T ss_pred HHHHHHHHcCCcEEEECCCCcchhhCCCCCCHHHHHHHHHHHHHCCCCCEEEEecccccCCCCcCcccccccccccHHHH
Confidence 3445554334679999999996522110 0 011 12 2345888886544211 0 1124
Q ss_pred HHHHHhhC-CCcEEEECCCCCcceEEEC-----C----EEEEcCCCCCCCCCCCCCCCCCcEEEEEEeCCe
Q 031964 60 LAMLQRQL-DVDILVTGHTHQFTAYKHE-----G----GVVINPGSATGAFSSITYDVNPSFVLMDIDGLR 120 (150)
Q Consensus 60 l~~~~~~~-~~div~~GHtH~~~~~~~~-----~----~~~iNpGS~~~~~~~~~~~~~~s~~il~~~~~~ 120 (150)
+.+++++. +++.+++||.|.+...... | ..+.|+-.- + ....+.|.+++++.+.
T Consensus 140 ~~~ll~~~~~V~~v~~GH~H~~~~~~~~~~~~~g~~v~~~~~~~q~~-----~--~~g~~~~r~~~f~~~~ 203 (214)
T cd07399 140 WDKLVKKNDNVFMVLSGHVHGAGRTTLVSVGDAGRTVHQMLADYQGE-----P--NGGNGFLRLLEFDPDN 203 (214)
T ss_pred HHHHHhCCCCEEEEEccccCCCceEEEcccCCCCCEeeEEeecccCC-----C--CCCcceEEEEEEecCC
Confidence 55666665 7999999999998765541 1 334455211 1 1224678888887653
No 46
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.07 E-value=9.7e-05 Score=57.10 Aligned_cols=32 Identities=22% Similarity=0.543 Sum_probs=28.7
Q ss_pred CCCcEEEECCCCCcceEEECCEEEEcCCCCCC
Q 031964 67 LDVDILVTGHTHQFTAYKHEGGVVINPGSATG 98 (150)
Q Consensus 67 ~~~div~~GHtH~~~~~~~~~~~~iNpGS~~~ 98 (150)
.++|+|+.||+|.......++++++.+|+-+.
T Consensus 194 ~~iD~IlgGH~H~~~~~~~~~t~vv~~g~~g~ 225 (257)
T cd07406 194 PEIDLILGGHDHEYILVQVGGTPIVKSGSDFR 225 (257)
T ss_pred CCCceEEecccceeEeeeECCEEEEeCCcCcc
Confidence 47999999999999888889999999998775
No 47
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=98.06 E-value=1.8e-05 Score=65.54 Aligned_cols=93 Identities=20% Similarity=0.320 Sum_probs=62.9
Q ss_pred HHHHHhhC--CCEEEEeCCCCCCC-C---------------------CCCeeEEEECCEEEEEecCcccc------cCC-
Q 031964 7 HDYLKIIC--PDLHIIRGEYDEET-R---------------------YPETKTLTIGQFKLGLCHGHQVI------PWG- 55 (150)
Q Consensus 7 ~~~l~~~~--~~~~~V~GN~D~~~-~---------------------lp~~~~~~~~~~~i~~~HG~~~~------~~~- 55 (150)
.+.|.+.. +.+++.+||||... . ++....+.++|..+++.||-... |..
T Consensus 299 A~~L~~vp~~I~v~i~PGnhDa~r~a~PQp~~~~~~kslf~~~n~~~v~NP~~~~l~G~~vL~~hG~sidDii~~vP~~~ 378 (481)
T COG1311 299 AEFLDQVPEHIKVFIMPGNHDAVRQALPQPHFPELIKSLFSLNNLLFVSNPALVSLHGVDVLIYHGRSIDDIIKLVPGAD 378 (481)
T ss_pred HHHHhhCCCCceEEEecCCCCccccccCCCCcchhhcccccccceEecCCCcEEEECCEEEEEecCCCHHHHHhhCCCCC
Confidence 34445443 45889999999861 1 22345778999999999986431 110
Q ss_pred --C-HHHHHH------------------------HHhhCCCcEEEECCCCCcceEEECCEEEEcCCCCCCC
Q 031964 56 --D-LDSLAM------------------------LQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGA 99 (150)
Q Consensus 56 --~-~~~l~~------------------------~~~~~~~div~~GHtH~~~~~~~~~~~~iNpGS~~~~ 99 (150)
. ...++. ++-+.-+|++++||+|........|..++|.|||-..
T Consensus 379 ~~~~~~ame~lLk~rHlaPtygg~~p~aP~~kD~lVIeevPDv~~~Ghvh~~g~~~y~gv~~vns~T~q~q 449 (481)
T COG1311 379 YDSPLKAMEELLKRRHLAPTYGGTLPIAPETKDYLVIEEVPDVFHTGHVHKFGTGVYEGVNLVNSGTWQEQ 449 (481)
T ss_pred ccchHHHHHHHHHhcccCCCCCCccccccCCcCceeeccCCcEEEEccccccceeEEeccceEEeeeecch
Confidence 0 011111 1123468999999999999998888999999998764
No 48
>PHA02546 47 endonuclease subunit; Provisional
Probab=98.02 E-value=4.7e-05 Score=61.27 Aligned_cols=67 Identities=13% Similarity=0.132 Sum_probs=42.4
Q ss_pred CCCcEEEECCCCCcceEEECCEEEEcCCCCCCCCCCCCCCCCCcEEEEEEeCCeEEEEEEEeeCCeEEEEEEEEec
Q 031964 67 LDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKK 142 (150)
Q Consensus 67 ~~~div~~GHtH~~~~~~~~~~~~iNpGS~~~~~~~~~~~~~~s~~il~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 142 (150)
.++|++..||.|.+.. . ..+.-|||+-.-. -.+.+...+|.++++++.++ +++.+.. -.+.++.|+.
T Consensus 178 ~~fdyvALGHiH~~~~--~--~~i~Y~GSp~~~s-f~E~~~~KG~~~vd~~~~~~--efip~~~--~~~~~i~~~~ 244 (340)
T PHA02546 178 KKYKQVWSGHFHTISE--K--GNVTYIGTPYTLT-AGDENDPRGFWVFDTETHKL--EFIANPT--TWHRRITYPD 244 (340)
T ss_pred ccCCEEeecccccCcc--c--CCEEEeCCceeeC-ccccCCCCeEEEEECCCCce--EEEeCCC--ceEEEEEecc
Confidence 4689999999998742 2 3478899976531 11233467899999887653 4444433 2355556655
No 49
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.01 E-value=0.00031 Score=54.41 Aligned_cols=32 Identities=31% Similarity=0.570 Sum_probs=26.1
Q ss_pred CCCcEEEECCCCCcce---EEECCEEEEcCCCCCC
Q 031964 67 LDVDILVTGHTHQFTA---YKHEGGVVINPGSATG 98 (150)
Q Consensus 67 ~~~div~~GHtH~~~~---~~~~~~~~iNpGS~~~ 98 (150)
.++|+|+.||+|.... ...++++++.+|+-+.
T Consensus 206 ~~iDlilgGH~H~~~~~~~~~~~~t~v~~~g~~~~ 240 (264)
T cd07411 206 PGIDVILSGHTHERTPKPIIAGGGTLVVEAGSHGK 240 (264)
T ss_pred CCCcEEEeCcccccccCcccccCCEEEEEcCcccc
Confidence 4799999999997654 3368999999999775
No 50
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=98.00 E-value=6.8e-06 Score=60.27 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=31.8
Q ss_pred EEEEecCcccccCCCHHHHHHHHhhCCCcEEEECCCCCcc
Q 031964 42 KLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFT 81 (150)
Q Consensus 42 ~i~~~HG~~~~~~~~~~~l~~~~~~~~~div~~GHtH~~~ 81 (150)
=|+|+|-.|..+.+++..+.+...+.+++.+++||.|-+-
T Consensus 161 fivM~HYPP~s~~~t~~~~sevlee~rv~~~lyGHlHgv~ 200 (230)
T COG1768 161 FIVMTHYPPFSDDGTPGPFSEVLEEGRVSKCLYGHLHGVP 200 (230)
T ss_pred EEEEEecCCCCCCCCCcchHHHHhhcceeeEEeeeccCCC
Confidence 4888898777666666667777788899999999999753
No 51
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=97.87 E-value=0.00018 Score=55.40 Aligned_cols=86 Identities=24% Similarity=0.303 Sum_probs=49.2
Q ss_pred EEEEecCcccccC---------CCHHHHHHHHhhCC--CcEEEECCCCCc--ceEEECCEEEEc----CCCCCCCCCCCC
Q 031964 42 KLGLCHGHQVIPW---------GDLDSLAMLQRQLD--VDILVTGHTHQF--TAYKHEGGVVIN----PGSATGAFSSIT 104 (150)
Q Consensus 42 ~i~~~HG~~~~~~---------~~~~~l~~~~~~~~--~div~~GHtH~~--~~~~~~~~~~iN----pGS~~~~~~~~~ 104 (150)
+++++|.++.... .+...+...+...+ ++++++||.|++ ......+..+.+ .++.+... ..
T Consensus 144 ~~v~~~hh~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 221 (301)
T COG1409 144 TVVVLHHHPLPSPGTGVDRVALRDAGELLDVLIAHGNDVRLVLSGHIHLAAQTVYQLNGTRLSDLLVGAGPATCSQ--VF 221 (301)
T ss_pred eEEEecCCCCCCCCCccceeeeecchhHHHHHHhcCCceEEEEeCcccccccccceeCCeeeeecccccCCcccee--ec
Confidence 4566665654321 11223444445556 999999999999 666666666664 44333321 12
Q ss_pred CCCCCcEEEEEEeCCeEEEEEEEee
Q 031964 105 YDVNPSFVLMDIDGLRVVVYVYELI 129 (150)
Q Consensus 105 ~~~~~s~~il~~~~~~i~v~~~~~~ 129 (150)
+.....|..+++....+.+..+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (301)
T COG1409 222 RGSATAFNTLDLDGPGVRVLVLAAE 246 (301)
T ss_pred CCCccceeeeeecCCCeeEEEEecC
Confidence 3445566677777766654444433
No 52
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=97.82 E-value=0.00022 Score=54.81 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=29.9
Q ss_pred CCcEEEECCCCCcceEEECCEEEEcCCCCCCCCCCCCCCCCCcEEEEEEeCCe
Q 031964 68 DVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLR 120 (150)
Q Consensus 68 ~~div~~GHtH~~~~~~~~~~~~iNpGS~~~~~~~~~~~~~~s~~il~~~~~~ 120 (150)
+.+.+++|||=.......++.+.|..|++-. .....+++.+..
T Consensus 184 g~~~vV~GHtp~~~~~~~~~~i~IDtGa~~g----------G~Ltal~l~~~~ 226 (245)
T PRK13625 184 GTAWIVYGHTPVKEPRFVNHTVNIDTGCVFG----------GRLTALRYPEME 226 (245)
T ss_pred CCcEEEECCCCCccceecCCeEEEECcCccC----------CEEEEEECCCCc
Confidence 4568999999776556667788899998543 245566665543
No 53
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=97.78 E-value=0.00039 Score=53.11 Aligned_cols=32 Identities=22% Similarity=0.485 Sum_probs=26.7
Q ss_pred CCCcEEEECCCCCcceE--EECCEEEEcCCCCCC
Q 031964 67 LDVDILVTGHTHQFTAY--KHEGGVVINPGSATG 98 (150)
Q Consensus 67 ~~~div~~GHtH~~~~~--~~~~~~~iNpGS~~~ 98 (150)
.++|+|++||+|..... ..++++++.+|+-+.
T Consensus 193 ~giDlvlggH~H~~~~~~~~~~~~~v~~~g~~~~ 226 (252)
T cd00845 193 PGIDVILGGHTHHLLEEPEVVNGTLIVQAGKYGK 226 (252)
T ss_pred CCccEEEcCCcCcccCCCcccCCEEEEeCChhHc
Confidence 58999999999987543 568999999998775
No 54
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=97.77 E-value=3.7e-05 Score=56.05 Aligned_cols=75 Identities=15% Similarity=0.054 Sum_probs=43.6
Q ss_pred CCCEEEEeCCCCCCCC-CCC--eeEEEECCEEEEEecCcccccCCCHHHHHHHHhhCCCcEEEECCCCCcceEEEC----
Q 031964 14 CPDLHIIRGEYDEETR-YPE--TKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHE---- 86 (150)
Q Consensus 14 ~~~~~~V~GN~D~~~~-lp~--~~~~~~~~~~i~~~HG~~~~~~~~~~~l~~~~~~~~~div~~GHtH~~~~~~~~---- 86 (150)
..++++|+||||.... ... ...-.+...-|+++|-... .+....+++++++||+|-.......
T Consensus 87 ~~~~~~v~GNHD~g~~~~~~~~~~~~~f~~~fi~l~H~p~~----------~~~~~~~~~~~lsGH~H~~~~~~~~~~~~ 156 (171)
T cd07384 87 DIPVYYVPGNHDIGYGEVISFPEVVDRFERYFILLTHIPLY----------RLLDTIKPVLILSGHDHDQCEVVHSSKAG 156 (171)
T ss_pred CceEEEECCccccCCCCccccHHHHHHHHhhheeEECCccH----------HHHhccCceEEEeCcccCCeEEEecCCCC
Confidence 3569999999998521 121 1111122223999994211 1334568999999999976443332
Q ss_pred CEEEEcCCCCCC
Q 031964 87 GGVVINPGSATG 98 (150)
Q Consensus 87 ~~~~iNpGS~~~ 98 (150)
...-|...|++.
T Consensus 157 ~~~ei~v~S~s~ 168 (171)
T cd07384 157 SVREITVKSFSW 168 (171)
T ss_pred CceEEeeccchh
Confidence 344455555543
No 55
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=97.74 E-value=0.00016 Score=55.21 Aligned_cols=63 Identities=25% Similarity=0.365 Sum_probs=37.2
Q ss_pred HHHHHHHhhCC-CEEEEeCCCCCCC--CCCCe---eEEEECCEEEEEecCcccccCCCHHHHHHHHhhCCCcEEEECCCC
Q 031964 5 EVHDYLKIICP-DLHIIRGEYDEET--RYPET---KTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTH 78 (150)
Q Consensus 5 ev~~~l~~~~~-~~~~V~GN~D~~~--~lp~~---~~~~~~~~~i~~~HG~~~~~~~~~~~l~~~~~~~~~div~~GHtH 78 (150)
++...++.+.. ++++|+||||... .+|.. ..-++.-..++++|||..... .+.. ++.||.|
T Consensus 87 ~~~~f~~~~~~~evi~i~GNHD~~i~~~~~~~~v~v~~~~~i~~~~~~HGh~~~~~------------~~~~-~I~GHeH 153 (235)
T COG1407 87 EVREFLELLDEREVIIIRGNHDNGIEEILPGFNVEVVDELEIGGLLFRHGHKEPEP------------EGLE-VIIGHEH 153 (235)
T ss_pred HHHHHHHHhccCcEEEEeccCCCccccccccCCceeeeeEEecCEEEEeCCCCCcc------------ccce-EEcccCC
Confidence 33444444432 5899999999873 23433 222233445899999854221 1122 8999999
Q ss_pred Cc
Q 031964 79 QF 80 (150)
Q Consensus 79 ~~ 80 (150)
-.
T Consensus 154 Pa 155 (235)
T COG1407 154 PA 155 (235)
T ss_pred cc
Confidence 43
No 56
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=97.69 E-value=4.6e-05 Score=57.02 Aligned_cols=18 Identities=33% Similarity=0.470 Sum_probs=14.8
Q ss_pred hhCCCcEEEECCCCCcce
Q 031964 65 RQLDVDILVTGHTHQFTA 82 (150)
Q Consensus 65 ~~~~~div~~GHtH~~~~ 82 (150)
...++|++++||||-..+
T Consensus 151 ~~~~~dl~l~GHtHggqi 168 (223)
T cd07385 151 AAWGVDLQLSGHTHGGQI 168 (223)
T ss_pred cccCccEEEeccCCCCEE
Confidence 456899999999997543
No 57
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=97.66 E-value=8.7e-05 Score=53.29 Aligned_cols=73 Identities=22% Similarity=0.225 Sum_probs=42.9
Q ss_pred CCEEEEeCCCCCCC--CCCCeeEEEECCEEEEEecCcccccCCCHHHHHHHHhhCCCcEEEECCCCCc-ceEEECCEEEE
Q 031964 15 PDLHIIRGEYDEET--RYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQF-TAYKHEGGVVI 91 (150)
Q Consensus 15 ~~~~~V~GN~D~~~--~lp~~~~~~~~~~~i~~~HG~~~~~~~~~~~l~~~~~~~~~div~~GHtH~~-~~~~~~~~~~i 91 (150)
.++++|+||||... .++....-.+...-|+++|... ..+....+.+++++||+|-. .....+++.-+
T Consensus 77 ~~i~~v~GNHD~~~~~~~~~~~~~~~~~~~~~l~H~p~----------~~~~~~~~~~~~l~GH~H~~~~~~~~~~~~e~ 146 (156)
T cd08165 77 LPLHVVVGNHDIGFHYEMTTYKLERFEKVFILLQHFPL----------YRLLQWLKPRLVLSGHTHSFCEVTHPDGTPEV 146 (156)
T ss_pred CeEEEEcCCCCcCCCCccCHHHHHHHHHHeeeeeCChH----------HHHHHhhCCCEEEEcccCCCceeEEECCEEEE
Confidence 46999999999752 2222111112222289999321 12334557889999999974 33445676665
Q ss_pred cCCCCC
Q 031964 92 NPGSAT 97 (150)
Q Consensus 92 NpGS~~ 97 (150)
-.-|.+
T Consensus 147 ~~~~~~ 152 (156)
T cd08165 147 TVPSFS 152 (156)
T ss_pred EEecce
Confidence 544444
No 58
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=97.62 E-value=0.0017 Score=53.33 Aligned_cols=93 Identities=18% Similarity=0.210 Sum_probs=63.9
Q ss_pred CEEEEEecCcccc--cCC-CH---HHHHHHHhhCCCcEEEECCCCCcceEEECCEEEEcCCCCCCCCCCCC--------C
Q 031964 40 QFKLGLCHGHQVI--PWG-DL---DSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSIT--------Y 105 (150)
Q Consensus 40 ~~~i~~~HG~~~~--~~~-~~---~~l~~~~~~~~~div~~GHtH~~~~~~~~~~~~iNpGS~~~~~~~~~--------~ 105 (150)
.++|++-|...+. ... +. ..|.-+++++++|+.++||-|.......+++.+|..|+-+..+.... .
T Consensus 214 ~WkIVvGHhPIySsG~hg~~~~L~~~L~PLL~ky~VdlYisGHDH~lq~i~~~gt~yIvSGaGs~~~~~~~~~~~~s~F~ 293 (394)
T PTZ00422 214 DYIIVVGDKPIYSSGSSKGDSYLSYYLLPLLKDAQVDLYISGYDRNMEVLTDEGTAHINCGSGGNSGRKSIMKNSKSLFY 293 (394)
T ss_pred CeEEEEecCceeecCCCCCCHHHHHHHHHHHHHcCcCEEEEccccceEEecCCCceEEEeCccccccCCCCCCCCCccee
Confidence 4678888844332 111 22 24566778899999999999987655667899999999765421000 0
Q ss_pred CCCCcEEEEEEeCCeEEEEEEEeeCCe
Q 031964 106 DVNPSFVLMDIDGLRVVVYVYELIDGE 132 (150)
Q Consensus 106 ~~~~s~~il~~~~~~i~v~~~~~~~~~ 132 (150)
.....|+.+++..+.+.+++++-..|+
T Consensus 294 ~~~~GF~~~~l~~~~l~~~fid~~~Gk 320 (394)
T PTZ00422 294 SEDIGFCIHELNAEGMVTKFVSGNTGE 320 (394)
T ss_pred cCCCCEEEEEEecCEEEEEEEeCCCCc
Confidence 123569999999999999999744444
No 59
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=97.61 E-value=0.00039 Score=52.09 Aligned_cols=92 Identities=21% Similarity=0.247 Sum_probs=58.1
Q ss_pred cHHHHHHHHhhCC---CEEEEeCCCCCCC-------------------------------------CCCCeeEEEECCEE
Q 031964 3 FQEVHDYLKIICP---DLHIIRGEYDEET-------------------------------------RYPETKTLTIGQFK 42 (150)
Q Consensus 3 ~~ev~~~l~~~~~---~~~~V~GN~D~~~-------------------------------------~lp~~~~~~~~~~~ 42 (150)
+.++++.+.++.. ++++|+||||... .+|. ...++..+
T Consensus 41 ~~~~l~~l~~~~~~~~~~~~l~GNHe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~--~~~~~~~~ 118 (225)
T cd00144 41 SVEVIDLLLALKILPDNVILLRGNHEDMLLNFLYGFYDEDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPL--AALIETKK 118 (225)
T ss_pred cHHHHHHHHHhcCCCCcEEEEccCchhhhhhhhcCCcchhhccchhHHHHHhhCHHHHHHHHHHHHhCcH--heEeCCCe
Confidence 5688999988753 6999999999751 1222 23455568
Q ss_pred EEEecCcccccCCC------------------------------------HHHHHHHHhhCCCcEEEECCCCCcceE---
Q 031964 43 LGLCHGHQVIPWGD------------------------------------LDSLAMLQRQLDVDILVTGHTHQFTAY--- 83 (150)
Q Consensus 43 i~~~HG~~~~~~~~------------------------------------~~~l~~~~~~~~~div~~GHtH~~~~~--- 83 (150)
++++||........ +..........+.+.||+|||-.....
T Consensus 119 ~~~vHag~~~~~~~~~~~~~~~~~~~~~~~lw~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~GHt~~~~~~~~~ 198 (225)
T cd00144 119 VLCVHGGLSPGLPLEEQIKEEPEDQLPEDLLWSDPLELPGGFGSSRRGGGPDAVEWFLKKNGLKLIVRGHTPVEEGYEFG 198 (225)
T ss_pred EEEEeCCCCCccchHHhhhcCcccccceeeeecCCCCCCCCCcCCCCCCCHHHHHHHHHHCCCeEEEEcCccccCccEEc
Confidence 99999986422100 011222334557889999999987654
Q ss_pred EECCEEEEcCCCC
Q 031964 84 KHEGGVVINPGSA 96 (150)
Q Consensus 84 ~~~~~~~iNpGS~ 96 (150)
..++.+-|-.|+.
T Consensus 199 ~~~~~i~IDtg~~ 211 (225)
T cd00144 199 HDGNLITIDSGCN 211 (225)
T ss_pred CCCCEEEEecCCc
Confidence 3345555766664
No 60
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=97.60 E-value=0.0027 Score=49.33 Aligned_cols=98 Identities=17% Similarity=0.227 Sum_probs=64.6
Q ss_pred CCEEEEeCCCCCCC-CC----------C------------CeeEEEECCEEEEEecCcccc------cCCC-HHHHHHH-
Q 031964 15 PDLHIIRGEYDEET-RY----------P------------ETKTLTIGQFKLGLCHGHQVI------PWGD-LDSLAML- 63 (150)
Q Consensus 15 ~~~~~V~GN~D~~~-~l----------p------------~~~~~~~~~~~i~~~HG~~~~------~~~~-~~~l~~~- 63 (150)
.++...+||||... .+ | ....++++|.+++.+||.... +..+ .+.++..
T Consensus 95 i~V~imPG~~Dp~~~~lPQqplh~~lfp~s~~~~~~~~vtNP~~~~i~g~~vLgtsGqni~Di~ky~~~~~~l~~me~~L 174 (257)
T cd07387 95 VPVDLMPGEFDPANHSLPQQPLHRCLFPKSSNYSTLNLVTNPYEFSIDGVRVLGTSGQNVDDILKYSSLESRLDILERTL 174 (257)
T ss_pred CeEEECCCCCCcccccCCCCCCCHHHhhcccccCCcEEeCCCeEEEECCEEEEEECCCCHHHHHHhCCCCCHHHHHHHHH
Confidence 46889999999861 11 1 124678999999999997531 1111 1111111
Q ss_pred ------------------------HhhCCCcEEEECCCCCcceEEEC-----CEEEEcCCCCCCCCCCCCCCCCCcEEEE
Q 031964 64 ------------------------QRQLDVDILVTGHTHQFTAYKHE-----GGVVINPGSATGAFSSITYDVNPSFVLM 114 (150)
Q Consensus 64 ------------------------~~~~~~div~~GHtH~~~~~~~~-----~~~~iNpGS~~~~~~~~~~~~~~s~~il 114 (150)
.-+.-++++++||.|........ .+++|+..+.... ++.+++
T Consensus 175 ~wrHlaPTaPDTL~~yP~~~~Dpfvi~~~PhVyf~Gnq~~f~t~~~~~~~~~~v~lv~vP~Fs~t---------~~~vlv 245 (257)
T cd07387 175 KWRHIAPTAPDTLWCYPFTDRDPFILEECPHVYFAGNQPKFGTKLVEGEEGQRVLLVCVPSFSKT---------GTAVLV 245 (257)
T ss_pred HhcccCCCCCCccccccCCCCCceeecCCCCEEEeCCCcceeeeEEEcCCCCeEEEEEeCCcCcC---------CEEEEE
Confidence 11234789999999998666543 3888999887753 688999
Q ss_pred EEeCCeE
Q 031964 115 DIDGLRV 121 (150)
Q Consensus 115 ~~~~~~i 121 (150)
+++.-+.
T Consensus 246 dl~tLe~ 252 (257)
T cd07387 246 NLRTLEC 252 (257)
T ss_pred ECCcCcE
Confidence 8876543
No 61
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=97.52 E-value=0.0019 Score=50.55 Aligned_cols=24 Identities=8% Similarity=0.139 Sum_probs=18.2
Q ss_pred cHHHHHHHHhhCCCEEEEeCCCCCC
Q 031964 3 FQEVHDYLKIICPDLHIIRGEYDEE 27 (150)
Q Consensus 3 ~~ev~~~l~~~~~~~~~V~GN~D~~ 27 (150)
...+++.++.++.++. +.||||++
T Consensus 71 g~~~~~~ln~~g~D~~-~lGNHefd 94 (281)
T cd07409 71 GNADAEFMNLLGYDAM-TLGNHEFD 94 (281)
T ss_pred ChHHHHHHHhcCCCEE-Eecccccc
Confidence 3567888888886544 55999988
No 62
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=97.51 E-value=0.00034 Score=53.36 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=39.4
Q ss_pred CEEEEEecCcccc---------c-CC------CHHHHHHHHhhCCCcEEEECCCCCcc-eEEECCEEEEcC
Q 031964 40 QFKLGLCHGHQVI---------P-WG------DLDSLAMLQRQLDVDILVTGHTHQFT-AYKHEGGVVINP 93 (150)
Q Consensus 40 ~~~i~~~HG~~~~---------~-~~------~~~~l~~~~~~~~~div~~GHtH~~~-~~~~~~~~~iNp 93 (150)
+..|+++|..|.. + +. ..+.+.++++..++++++|||+|... ....+++.++|+
T Consensus 165 ~~~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~~v~~~i~GH~H~~~~~~~i~~~~~~~~ 235 (239)
T TIGR03729 165 KQVIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHFGQLLVKYEIKDVIFGHLHRRFGPLTIGGTTYHNR 235 (239)
T ss_pred CCEEEEEcccchHHHhcCCCCCcchhhhhhccChHHHHHHHHHhCCCEEEECCccCCCCCEEECCEEEEec
Confidence 4579999975532 1 11 23567777777799999999999996 456699998875
No 63
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=97.38 E-value=0.0016 Score=51.34 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=18.3
Q ss_pred HHHHHHHHhhCC--CEEEEeCCCCCC
Q 031964 4 QEVHDYLKIICP--DLHIIRGEYDEE 27 (150)
Q Consensus 4 ~ev~~~l~~~~~--~~~~V~GN~D~~ 27 (150)
..+.+.|+++.. ++++|.||||+.
T Consensus 93 ~~~~~~L~~L~~~~gv~av~GNHd~~ 118 (284)
T COG1408 93 AALALFLAKLKAPLGVFAVLGNHDYG 118 (284)
T ss_pred HHHHHHHHhhhccCCEEEEecccccc
Confidence 456667777663 489999999987
No 64
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=97.37 E-value=0.00072 Score=52.62 Aligned_cols=38 Identities=26% Similarity=0.379 Sum_probs=30.6
Q ss_pred HHHHhh-CCCcEEEECCCCCcceE-EECCEEEEcCCCCCC
Q 031964 61 AMLQRQ-LDVDILVTGHTHQFTAY-KHEGGVVINPGSATG 98 (150)
Q Consensus 61 ~~~~~~-~~~div~~GHtH~~~~~-~~~~~~~iNpGS~~~ 98 (150)
.++++. .++|+|++||+|..... ..++++++++|+-+.
T Consensus 210 ~~la~~~~~vD~IlgGHsH~~~~~~~~~~~~v~q~g~~g~ 249 (277)
T cd07410 210 YELAEEVPGIDAILTGHQHRRFPGPTVNGVPVVQPGNWGS 249 (277)
T ss_pred HHHHhcCCCCcEEEeCCCccccccCCcCCEEEEcCChhhC
Confidence 344444 68999999999998765 578999999999775
No 65
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=97.33 E-value=0.0005 Score=56.10 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=38.4
Q ss_pred CCcEEEECCCCCcceEEECCEEEEcCCCCCCCCCCCCCCCCCcEEEEEEeCCe
Q 031964 68 DVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLR 120 (150)
Q Consensus 68 ~~div~~GHtH~~~~~~~~~~~~iNpGS~~~~~~~~~~~~~~s~~il~~~~~~ 120 (150)
.+|++..||.|.+......+..++.|||+-... ...-+....+.+++++.+.
T Consensus 201 ~~~YvALGHiH~~~~~~~~~~~i~y~GS~~~~~-f~E~~~~k~~~~v~~~~~~ 252 (390)
T COG0420 201 GFDYVALGHIHKRQVIPKEDPPIVYPGSPERYS-FGEEGERKGVVLVEFSGGK 252 (390)
T ss_pred CcceEEcCCcccccccCCCCCceecCCCceecc-hhHcCCcccEEEEEecCCc
Confidence 389999999999987766665568999987642 1233445677789998884
No 66
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=97.32 E-value=0.0017 Score=51.06 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=26.0
Q ss_pred CCCcEEEECCCCCcce-------------------EEECCEEEEcCCCCCC
Q 031964 67 LDVDILVTGHTHQFTA-------------------YKHEGGVVINPGSATG 98 (150)
Q Consensus 67 ~~~div~~GHtH~~~~-------------------~~~~~~~~iNpGS~~~ 98 (150)
.++|+|+.||+|.+.. ...+++++++||+-|.
T Consensus 208 ~giD~IigGHsH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~q~g~~g~ 258 (285)
T cd07405 208 GGLDLIVGGHSQDPVCMAAENKKQVDYVPGTPCKPDVQNGVWIVQAHEWGK 258 (285)
T ss_pred CCCCEEEeCCCCccccCccccccccccccCccccCcccCCEEEEeCChHHc
Confidence 5899999999999763 2357888999998775
No 67
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=97.30 E-value=0.001 Score=56.07 Aligned_cols=85 Identities=18% Similarity=0.176 Sum_probs=49.6
Q ss_pred CEEEEEecCcccccCC---CHHHHHHHHhhCCCcEEEECCCCCcceEE----ECCEEEEcCCCCCCCCCCCCCCC-CCcE
Q 031964 40 QFKLGLCHGHQVIPWG---DLDSLAMLQRQLDVDILVTGHTHQFTAYK----HEGGVVINPGSATGAFSSITYDV-NPSF 111 (150)
Q Consensus 40 ~~~i~~~HG~~~~~~~---~~~~l~~~~~~~~~div~~GHtH~~~~~~----~~~~~~iNpGS~~~~~~~~~~~~-~~s~ 111 (150)
-++++++|-....... -++.+..- =.|+|+.||-|...+.. ..+-.++.|||.-... -..+.. +.-.
T Consensus 211 WFNllvlHQNr~~h~~tn~lpE~flp~----F~DlviWGHEHEC~i~p~~n~~~~F~i~QPGSsVaTS-L~~gEa~~Khv 285 (646)
T KOG2310|consen 211 WFNLLVLHQNRSKHRPTNFLPEQFLPD----FLDLVIWGHEHECKIDPQYNAIQGFYILQPGSSVATS-LSPGEAKPKHV 285 (646)
T ss_pred ceeeEEEeecccCCCCcccCcHhHhhh----hhhheeeccccccccCcccccccceeeecCCCccccc-cCcccccCceE
Confidence 3578888854321111 12332221 26899999999876543 3577889999953321 112332 3456
Q ss_pred EEEEEeCCeEEEEEEEee
Q 031964 112 VLMDIDGLRVVVYVYELI 129 (150)
Q Consensus 112 ~il~~~~~~i~v~~~~~~ 129 (150)
.||+|.++....+-..++
T Consensus 286 ~lL~Ikg~~~~l~~IpL~ 303 (646)
T KOG2310|consen 286 GLLRIKGRKFKLEKIPLR 303 (646)
T ss_pred EEEEecCCcccccccccc
Confidence 688998776665555554
No 68
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=97.29 E-value=0.0017 Score=49.43 Aligned_cols=26 Identities=23% Similarity=0.118 Sum_probs=21.6
Q ss_pred CcHHHHHHHHhhCCCEEEEeCCCCCC
Q 031964 2 TFQEVHDYLKIICPDLHIIRGEYDEE 27 (150)
Q Consensus 2 ~~~ev~~~l~~~~~~~~~V~GN~D~~ 27 (150)
+.+++++.|++++.++..+.+||+++
T Consensus 65 ~~~~~~~~L~~~G~d~~tlaNNH~fD 90 (239)
T cd07381 65 APPEVADALKAAGFDVVSLANNHTLD 90 (239)
T ss_pred CCHHHHHHHHHhCCCEEEcccccccc
Confidence 35789999999997777777799987
No 69
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=97.29 E-value=0.0014 Score=48.87 Aligned_cols=75 Identities=16% Similarity=0.227 Sum_probs=45.8
Q ss_pred CCEEEEeCCCCCCCC----CCCeeEEEECCEEEEEecCcccccCCCHHHHHHHHhhCCCcEEEECCCCCcceEEECCEEE
Q 031964 15 PDLHIIRGEYDEETR----YPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVV 90 (150)
Q Consensus 15 ~~~~~V~GN~D~~~~----lp~~~~~~~~~~~i~~~HG~~~~~~~~~~~l~~~~~~~~~div~~GHtH~~~~~~~~~~~~ 90 (150)
.++++|+||||-... .|... -.+...=|++.|-... .+.++ .+...+.+.++++|++||.|............
T Consensus 81 ~~~~~VpGNHDIG~~~~~~~~~~v-~RF~~~Fi~lsH~P~~-~~~~~-~~~~~~~~~~p~~Ifs~H~H~s~~~~~~~~~~ 157 (195)
T cd08166 81 TKIIYLPGDNDIGGEEEDPIESKI-RRFEKYFIMLSHVPLL-AEGGQ-ALKHVVTDLDPDLIFSAHRHKSSIFMYDRLLR 157 (195)
T ss_pred CcEEEECCCCCcCCCCCCcCHHHH-HHHHHhheeeeccccc-ccccH-HHHHHHHhcCceEEEEcCccceeeEEeecccc
Confidence 358999999997521 12110 0011111999995432 22222 45566678899999999999988776655443
Q ss_pred Ec
Q 031964 91 IN 92 (150)
Q Consensus 91 iN 92 (150)
+|
T Consensus 158 ~~ 159 (195)
T cd08166 158 QN 159 (195)
T ss_pred hh
Confidence 33
No 70
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=97.24 E-value=0.00039 Score=51.75 Aligned_cols=58 Identities=17% Similarity=0.091 Sum_probs=33.6
Q ss_pred CCEEEEeCCCCCCCCC-CCe-eEEEECCEEEEEecCcccccCCCHHHHHHHHhhCCCcEEEECCCCCcce
Q 031964 15 PDLHIIRGEYDEETRY-PET-KTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTA 82 (150)
Q Consensus 15 ~~~~~V~GN~D~~~~l-p~~-~~~~~~~~~i~~~HG~~~~~~~~~~~l~~~~~~~~~div~~GHtH~~~~ 82 (150)
.+++.|+||||-...- ... ..-.+...-|+++|-..+. .....+++++++||||--.+
T Consensus 99 i~~i~V~GNHDIG~~~~~~~~~i~RF~~~FilL~H~P~~~----------~~~~~~~dl~lSGHtHgGqi 158 (193)
T cd08164 99 TPLINIAGNHDVGYGGEVTEARIERFESLFILLTHVPLYK----------IFLEGKPGLILTGHDHEGCD 158 (193)
T ss_pred ceEEEECCcccCCCCCccchHHhhheheeEEEEEccccee----------ccccCCCCEEEeCccCCCeE
Confidence 4578999999975211 111 1111112119999943211 11235789999999996544
No 71
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=97.11 E-value=0.012 Score=44.90 Aligned_cols=26 Identities=15% Similarity=-0.011 Sum_probs=21.5
Q ss_pred CcHHHHHHHHhhCCCEEEEeCCCCCC
Q 031964 2 TFQEVHDYLKIICPDLHIIRGEYDEE 27 (150)
Q Consensus 2 ~~~ev~~~l~~~~~~~~~V~GN~D~~ 27 (150)
+.+++++.|+.++.++..+.+||+++
T Consensus 61 ~~~~~~~~l~~~G~d~~~laNNH~fD 86 (239)
T smart00854 61 APPENAAALKAAGFDVVSLANNHSLD 86 (239)
T ss_pred CCHHHHHHHHHhCCCEEEeccCcccc
Confidence 35789999999997777777799987
No 72
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=97.06 E-value=0.0049 Score=50.90 Aligned_cols=62 Identities=16% Similarity=0.049 Sum_probs=42.1
Q ss_pred CCcEEEECCCCCcceEEECCEEEEcCCCCCCCCCCCCCCCCCcEEEEEEeCCe-EEEEEEEeeCC
Q 031964 68 DVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLR-VVVYVYELIDG 131 (150)
Q Consensus 68 ~~div~~GHtH~~~~~~~~~~~~iNpGS~~~~~~~~~~~~~~s~~il~~~~~~-i~v~~~~~~~~ 131 (150)
++|++.-||.|.|... .+...+.-+||+-.-.. ...+...++.++++++++ ..++...+...
T Consensus 220 ~~dYvALGHlH~~Q~v-~~~~~vrYsGSpl~~sF-sE~~~~K~v~lVel~~~~~~~v~~i~l~~~ 282 (407)
T PRK10966 220 PADYIALGHIHRAQKV-GGTEHIRYSGSPIPLSF-DELGKSKSVHLVEFDQGKLQSVTPLPVPVF 282 (407)
T ss_pred ccCeeeccccccCcCC-CCCCcEEEcCCCCCCCc-cccCCCCeEEEEEEcCCccceEEEEECCCC
Confidence 4799999999998543 13346788999754211 122345789999998665 66777777653
No 73
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=97.05 E-value=0.0028 Score=49.83 Aligned_cols=32 Identities=34% Similarity=0.432 Sum_probs=27.7
Q ss_pred CCCcEEEECCCCCcceE---EECCEEEEcCCCCCC
Q 031964 67 LDVDILVTGHTHQFTAY---KHEGGVVINPGSATG 98 (150)
Q Consensus 67 ~~~div~~GHtH~~~~~---~~~~~~~iNpGS~~~ 98 (150)
.++|+|+.||+|..... ..++++++.||+-|.
T Consensus 228 ~~iD~IlgGHsH~~~~~~~~~~~~~~v~q~g~~g~ 262 (288)
T cd07412 228 PDVDVVFAGHTHQAYNCTVPAGNPRLVTQAGSYGK 262 (288)
T ss_pred CCCCEEEeCccCccccccccCcCCEEEEecChhhc
Confidence 47999999999998765 568999999999885
No 74
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.94 E-value=0.025 Score=43.89 Aligned_cols=95 Identities=19% Similarity=0.188 Sum_probs=58.7
Q ss_pred cHHHHHHHHhhCCCEEEEeCCCCCCC-----------------CCC------CeeEEEECCEEEEEec--CcccccC-CC
Q 031964 3 FQEVHDYLKIICPDLHIIRGEYDEET-----------------RYP------ETKTLTIGQFKLGLCH--GHQVIPW-GD 56 (150)
Q Consensus 3 ~~ev~~~l~~~~~~~~~V~GN~D~~~-----------------~lp------~~~~~~~~~~~i~~~H--G~~~~~~-~~ 56 (150)
++++++.|.+++.++... |||+++. .+| ...+++.+|.||.++- |....+. .+
T Consensus 47 ~~~~~~~L~~~G~D~iTl-GNH~fD~gel~~~l~~~~~~l~~aN~~~~~pg~~~~i~~~~G~kIaVigl~g~~~~~~~~~ 125 (255)
T cd07382 47 TPKIAKELLSAGVDVITM-GNHTWDKKEILDFIDEEPRLLRPANYPPGTPGRGYGVVEVNGKKIAVINLMGRVFMPPLDN 125 (255)
T ss_pred CHHHHHHHHhcCCCEEEe-cccccCcchHHHHHhcCcCceEeeecCCCCCCCCeEEEEECCEEEEEEEEecccCCCcCCC
Confidence 478899999999776666 9999871 222 1356678898887754 2212110 00
Q ss_pred H---------------------------HHHHHHHhh--CCCcEEEECCCCCcceEE--E-CCEEE-EcCCCCCC
Q 031964 57 L---------------------------DSLAMLQRQ--LDVDILVTGHTHQFTAYK--H-EGGVV-INPGSATG 98 (150)
Q Consensus 57 ~---------------------------~~l~~~~~~--~~~div~~GHtH~~~~~~--~-~~~~~-iNpGS~~~ 98 (150)
+ .+-..++.. .++|+|+.||||.+.... . +|+.+ --.|-.|.
T Consensus 126 P~~~~~~~v~~lk~~~D~IIV~~H~g~tsEk~ala~~ldg~VdvIvGtHTHv~t~d~~il~~gTa~itd~Gm~G~ 200 (255)
T cd07382 126 PFRAADELLEELKEEADIIFVDFHAEATSEKIALGWYLDGRVSAVVGTHTHVQTADERILPGGTAYITDVGMTGP 200 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEECCCCCHHHHHHHHhCCCCceEEEeCCCCccCCccEEeeCCeEEEecCccccC
Confidence 0 011122233 259999999999996543 4 77744 56777665
No 75
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=96.93 E-value=0.0024 Score=49.65 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=37.0
Q ss_pred cHHHHHHHHhhCCCEEEEeCCCCCC---------------------------------CCCCCeeEEEECCEEEEEecCc
Q 031964 3 FQEVHDYLKIICPDLHIIRGEYDEE---------------------------------TRYPETKTLTIGQFKLGLCHGH 49 (150)
Q Consensus 3 ~~ev~~~l~~~~~~~~~V~GN~D~~---------------------------------~~lp~~~~~~~~~~~i~~~HG~ 49 (150)
+.||++.|++++.++++|+||||.. .++|. .+..++.+++++||.
T Consensus 43 s~evl~~l~~l~~~v~~VlGNHD~~ll~~~~g~~~~~~~~t~~~~l~~~~~~~~~~wLr~lPl--~~~~~~~~~l~vHAG 120 (257)
T cd07422 43 SLETLRFVKSLGDSAKTVLGNHDLHLLAVAAGIKKPKKKDTLDDILNAPDRDELLDWLRHQPL--LHRDPELGILMVHAG 120 (257)
T ss_pred HHHHHHHHHhcCCCeEEEcCCchHHHHHHhcCccccccHhHHHHHHhccchHHHHHHHHhCCC--EEEECCccEEEEccC
Confidence 6789999999876799999999964 12443 334566789999987
Q ss_pred ccccC
Q 031964 50 QVIPW 54 (150)
Q Consensus 50 ~~~~~ 54 (150)
....|
T Consensus 121 i~p~w 125 (257)
T cd07422 121 IPPQW 125 (257)
T ss_pred CCCCC
Confidence 65333
No 76
>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]
Probab=96.88 E-value=0.00026 Score=48.62 Aligned_cols=94 Identities=22% Similarity=0.263 Sum_probs=57.4
Q ss_pred eCCCCCCCCCCCeeEEEECCEEEEEecCcccccC--CCHHHHHHHHhhCCCcEEEECCCCCcceEEEC--CEEEEcCCCC
Q 031964 21 RGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPW--GDLDSLAMLQRQLDVDILVTGHTHQFTAYKHE--GGVVINPGSA 96 (150)
Q Consensus 21 ~GN~D~~~~lp~~~~~~~~~~~i~~~HG~~~~~~--~~~~~l~~~~~~~~~div~~GHtH~~~~~~~~--~~~~iNpGS~ 96 (150)
.|..+....+|....... ...++|+++..+. .....+....+....+++.+||+|.+...... ...+.|||+.
T Consensus 27 ~g~~~~~~~lp~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~~~ 103 (155)
T COG0639 27 AGGLETFDSLPLAAVAEG---GKLLCHHGGLSPGLDRLLDIIEVLDRLRACEVPHAGHTHDLLWSDPDGGDRRIWNPGPR 103 (155)
T ss_pred cchhhHHHhhhHHHHhcC---CceeeecCCCCcchhhhHHHHHHHhhhhcccCCCccccccccCCCCCCCcccccccCCC
Confidence 355555566665544433 4555665655443 22233333333334589999999998443333 2789999999
Q ss_pred CCCCCCCCCCCCCcEEEEEEeCC
Q 031964 97 TGAFSSITYDVNPSFVLMDIDGL 119 (150)
Q Consensus 97 ~~~~~~~~~~~~~s~~il~~~~~ 119 (150)
|.|+.. .+..+.|++++....
T Consensus 104 g~~~~~--~~~~~~f~~~~~~~~ 124 (155)
T COG0639 104 GVPRDG--GDVTAVFGIVHTPKL 124 (155)
T ss_pred CCCccc--cchhhHHhhhcccce
Confidence 998521 256778888876554
No 77
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=96.84 E-value=0.0049 Score=47.56 Aligned_cols=33 Identities=15% Similarity=0.365 Sum_probs=27.0
Q ss_pred hCCCcEEEECCCCCcceE---EECCEEEEcCCCCCC
Q 031964 66 QLDVDILVTGHTHQFTAY---KHEGGVVINPGSATG 98 (150)
Q Consensus 66 ~~~~div~~GHtH~~~~~---~~~~~~~iNpGS~~~ 98 (150)
..++|+|+.||+|..... ..++++++.+|+-+.
T Consensus 199 ~~giDvIigGH~H~~~~~~~~~~~~~~ivq~g~~g~ 234 (257)
T cd07408 199 VTGIDLIIDGHSHTTIEIGKKDGNNVLLTQTGAYLA 234 (257)
T ss_pred CCCceEEEeCCCcccccCcccccCCeEEEcCChHHc
Confidence 358999999999997654 358899999998664
No 78
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=96.82 E-value=0.0029 Score=49.59 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=21.8
Q ss_pred cHHHHHHHHhhCCCEEEEeCCCCCC
Q 031964 3 FQEVHDYLKIICPDLHIIRGEYDEE 27 (150)
Q Consensus 3 ~~ev~~~l~~~~~~~~~V~GN~D~~ 27 (150)
+.+|++.++++..++++|+||||..
T Consensus 45 s~~vl~~l~~l~~~~~~VlGNHD~~ 69 (275)
T PRK00166 45 SLEVLRFVKSLGDSAVTVLGNHDLH 69 (275)
T ss_pred HHHHHHHHHhcCCCeEEEecChhHH
Confidence 5789999999876799999999964
No 79
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=96.76 E-value=0.0029 Score=49.71 Aligned_cols=50 Identities=24% Similarity=0.301 Sum_probs=36.6
Q ss_pred cHHHHHHHHhhCCCEEEEeCCCCCC---------------------------------CCCCCeeEEEECCEEEEEecCc
Q 031964 3 FQEVHDYLKIICPDLHIIRGEYDEE---------------------------------TRYPETKTLTIGQFKLGLCHGH 49 (150)
Q Consensus 3 ~~ev~~~l~~~~~~~~~V~GN~D~~---------------------------------~~lp~~~~~~~~~~~i~~~HG~ 49 (150)
+.+|++.++++...+.+|+||||.. ..+|.. +..++.+++++|+.
T Consensus 45 slevL~~l~~l~~~~~~VlGNHD~~lL~~~~g~~~~~~~d~l~~~l~a~~~~ell~wLr~lPl~--i~~~~~~~~lVHAG 122 (279)
T TIGR00668 45 SLEVLRYVKSLGDAVRLVLGNHDLHLLAVFAGISRNKPKDRLDPLLEAPDADELLNWLRRQPLL--QHDEEKKLVMAHAG 122 (279)
T ss_pred HHHHHHHHHhcCCCeEEEEChhHHHHHHHhcCCCccCchHHHHHHHHccCHHHHHHHHHcCCcE--EEeCCCCEEEEecC
Confidence 5789999999876678999999963 134543 33457789999988
Q ss_pred ccccC
Q 031964 50 QVIPW 54 (150)
Q Consensus 50 ~~~~~ 54 (150)
..+.|
T Consensus 123 i~P~w 127 (279)
T TIGR00668 123 ITPQW 127 (279)
T ss_pred CCCCC
Confidence 66333
No 80
>PLN02533 probable purple acid phosphatase
Probab=96.67 E-value=0.044 Score=45.56 Aligned_cols=85 Identities=18% Similarity=0.193 Sum_probs=50.1
Q ss_pred HHHHHHhhCCCcEEEECCCCCcceE--------EECCEEEEcCCCCCCCCCC-C---C--------CCCCCcEEEEEEeC
Q 031964 59 SLAMLQRQLDVDILVTGHTHQFTAY--------KHEGGVVINPGSATGAFSS-I---T--------YDVNPSFVLMDIDG 118 (150)
Q Consensus 59 ~l~~~~~~~~~div~~GHtH~~~~~--------~~~~~~~iNpGS~~~~~~~-~---~--------~~~~~s~~il~~~~ 118 (150)
.++.++.+.++|++++||.|..... ...+.++|-.|+.|..-+. . . +.....|+.|++-+
T Consensus 313 ~le~Ll~~~~VdlvlsGH~H~YeR~~p~~~~~~~~~gpvyiv~G~gG~~e~~~~~~~~~~~~~s~~r~~~~G~~~l~v~n 392 (427)
T PLN02533 313 SMETLLYKARVDLVFAGHVHAYERFDRVYQGKTDKCGPVYITIGDGGNREGLATKYIDPKPDISLFREASFGHGQLNVVD 392 (427)
T ss_pred HHHHHHHHhCCcEEEecceecccccccccCCccCCCCCEEEEeCCCccccccccccCCCCCCceeEEeccCCEEEEEEEc
Confidence 4566777889999999999975321 1246788888887764210 0 0 01234667777654
Q ss_pred C-eEEEEEEEeeCC-eEEEEEEEEecc
Q 031964 119 L-RVVVYVYELIDG-EVKVDKIDFKKT 143 (150)
Q Consensus 119 ~-~i~v~~~~~~~~-~~~~~~~~~~~~ 143 (150)
. .+..++++-.++ .+..-++-..+.
T Consensus 393 ~t~l~~~~~~~~~~~~~~~D~~~i~~~ 419 (427)
T PLN02533 393 ANTMEWTWHRNDDDQSVASDSVWLKSL 419 (427)
T ss_pred CCeEEEEEEecCCCCceeeeEEEEEec
Confidence 4 466666665544 233444444333
No 81
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.64 E-value=0.0054 Score=47.39 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=21.4
Q ss_pred CCcEEEECCCCCcceEEECCEEEEcCCCCCC
Q 031964 68 DVDILVTGHTHQFTAYKHEGGVVINPGSATG 98 (150)
Q Consensus 68 ~~div~~GHtH~~~~~~~~~~~~iNpGS~~~ 98 (150)
++|++..||.|.+... .+...+.-|||+-.
T Consensus 213 ~~dYvALGHiH~~q~~-~~~~~i~YsGSp~~ 242 (253)
T TIGR00619 213 EADYVALGHHHIHKIS-KGRERVRYSGSPFP 242 (253)
T ss_pred ccchhhcccccccccc-CCCCCEEECCCCcc
Confidence 5788999999986432 34456778898764
No 82
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=96.63 E-value=0.027 Score=47.41 Aligned_cols=68 Identities=21% Similarity=0.104 Sum_probs=43.3
Q ss_pred EEEEEecCccccc---C----------CCHHHHHHHHhhC-CCcEEEECCCCCcceEEE---------CCEEEEcCCCCC
Q 031964 41 FKLGLCHGHQVIP---W----------GDLDSLAMLQRQL-DVDILVTGHTHQFTAYKH---------EGGVVINPGSAT 97 (150)
Q Consensus 41 ~~i~~~HG~~~~~---~----------~~~~~l~~~~~~~-~~div~~GHtH~~~~~~~---------~~~~~iNpGS~~ 97 (150)
..|+++|..++.. + ...++|.++++.+ ++..+++||+|+..+... .+.+=||.+|+-
T Consensus 339 ~VVVf~HHPp~s~g~~~~Dp~~pg~~~~n~~eLldLL~~ypnV~aVfsGHvH~n~i~~~~~~~~~~p~~gfweI~TaSlv 418 (496)
T TIGR03767 339 LFVLFSHHTSWSMVNELTDPVDPGEKRHLGTELVSLLLEHPNVLAWVNGHTHSNKITAHRRVEGVGKDKGFWEINTASHI 418 (496)
T ss_pred CEEEEECCCCccccccccccccccccccCHHHHHHHHhcCCCceEEEECCcCCCccccccCCCCCCCcCCeEEEeccccc
Confidence 4688888654310 1 1124566666665 788999999999865543 266779999965
Q ss_pred CCCCCCCCCCCCcEEEEEE
Q 031964 98 GAFSSITYDVNPSFVLMDI 116 (150)
Q Consensus 98 ~~~~~~~~~~~~s~~il~~ 116 (150)
. + +..|=++|+
T Consensus 419 d--f------Pq~~Ri~Ei 429 (496)
T TIGR03767 419 D--F------PQQGRIIEL 429 (496)
T ss_pred c--C------CCCceEEEE
Confidence 3 1 235666665
No 83
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=96.61 E-value=0.053 Score=43.72 Aligned_cols=68 Identities=15% Similarity=0.068 Sum_probs=46.0
Q ss_pred HHhhCCCcEEEECCCCCcc-eEEECC-EEEEcCCCCCCCCCCCCCCCCCcEEEEEEeCCeEEEEEEEeeCC
Q 031964 63 LQRQLDVDILVTGHTHQFT-AYKHEG-GVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDG 131 (150)
Q Consensus 63 ~~~~~~~div~~GHtH~~~-~~~~~~-~~~iNpGS~~~~~~~~~~~~~~s~~il~~~~~~i~v~~~~~~~~ 131 (150)
+....+++.++|||-|.-. .....+ .+++=.|..|.--++ .++....-=|++++...-++..|+.-++
T Consensus 294 L~~r~~Vk~vf~GHdHvNDfC~~~k~~~wlCygGgaGyggYg-~~gw~Rr~Rv~e~d~~~~~IkTWKRl~d 363 (379)
T KOG1432|consen 294 LVNRGNVKGVFCGHDHVNDFCGELKGELWLCYGGGAGYGGYG-IGGWERRARVFELDLNKDRIKTWKRLDD 363 (379)
T ss_pred HHhccCcceEEeccccccceecccCCeEEEEecCCCccCCcC-cCCcccceEEEEccccccccceeeecCC
Confidence 3336689999999999873 334445 888889998864222 2334455667787777766777766544
No 84
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=96.61 E-value=0.03 Score=47.97 Aligned_cols=23 Identities=4% Similarity=-0.075 Sum_probs=18.0
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCC
Q 031964 4 QEVHDYLKIICPDLHIIRGEYDEE 27 (150)
Q Consensus 4 ~ev~~~l~~~~~~~~~V~GN~D~~ 27 (150)
...++.+..++. -..+.||||++
T Consensus 72 ~~~i~~~N~~g~-Da~~lGNHEFd 94 (550)
T TIGR01530 72 RADAALMNAAGF-DFFTLGNHEFD 94 (550)
T ss_pred HHHHHHHhccCC-CEEEecccccc
Confidence 456788888874 37789999988
No 85
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=96.51 E-value=0.013 Score=46.14 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=24.0
Q ss_pred CCc-EEEECCCCCcceEE-ECCEEEEcCCCCCC
Q 031964 68 DVD-ILVTGHTHQFTAYK-HEGGVVINPGSATG 98 (150)
Q Consensus 68 ~~d-iv~~GHtH~~~~~~-~~~~~~iNpGS~~~ 98 (150)
+.| +|+.||+|...... .++++++.||+.|.
T Consensus 218 ~id~~Ii~GHsH~~~~~~~~~~~~ivq~G~~g~ 250 (282)
T cd07407 218 DTPIQFLGGHSHVRDFTQYDSSSTGLESGRYLE 250 (282)
T ss_pred CCCEEEEeCCcccccceeccCcEEEEeccchhh
Confidence 456 79999999753333 47899999999885
No 86
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=96.46 E-value=0.016 Score=49.49 Aligned_cols=46 Identities=11% Similarity=0.160 Sum_probs=31.9
Q ss_pred CCcEEEECCCCCcce-------------------EEECCEEEEcCCCCCCCCCCCCCCCCCcEEEEEEeCCeEE
Q 031964 68 DVDILVTGHTHQFTA-------------------YKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVV 122 (150)
Q Consensus 68 ~~div~~GHtH~~~~-------------------~~~~~~~~iNpGS~~~~~~~~~~~~~~s~~il~~~~~~i~ 122 (150)
++|+|+.||+|.... ...++++++.+|+.|.- -+-.-|+++++.+.
T Consensus 245 ~IDvIlgGHsH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivqag~~g~~---------vg~l~l~~~~g~~~ 309 (551)
T PRK09558 245 GLDMIVGGHSQDPVCMAAENKKQVDYVPGTPCKPDQQNGTWIVQAHEWGKY---------VGRADFEFRNGELK 309 (551)
T ss_pred CceEEEeCCCCcccccCCCcccccccCCCCCCCCcccCCEEEEecChhhhe---------eEEEEEEEECCeEE
Confidence 799999999998643 23478889999987752 23344555555544
No 87
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.0073 Score=47.27 Aligned_cols=75 Identities=17% Similarity=0.284 Sum_probs=48.2
Q ss_pred HHHHHHhhCCCcEEEECCCCCcc-eEE-ECCEEEEcCCCCCCCCCCCCC------------CCCCcEEEEEEeCCeEEEE
Q 031964 59 SLAMLQRQLDVDILVTGHTHQFT-AYK-HEGGVVINPGSATGAFSSITY------------DVNPSFVLMDIDGLRVVVY 124 (150)
Q Consensus 59 ~l~~~~~~~~~div~~GHtH~~~-~~~-~~~~~~iNpGS~~~~~~~~~~------------~~~~s~~il~~~~~~i~v~ 124 (150)
+|.-+++..++|+.++||-|... +.. ..++-++-.|.-+....+.+- -+...|+-+++...+.++.
T Consensus 234 ~LlPiL~~n~VdlY~nGHDHcLQhis~~e~~iqf~tSGagSkaw~g~~~~~~~~p~~lkF~YdgqGfmsv~is~~e~~vv 313 (336)
T KOG2679|consen 234 QLLPILEANGVDLYINGHDHCLQHISSPESGIQFVTSGAGSKAWRGTDHNPEVNPKELKFYYDGQGFMSVEISHSEARVV 313 (336)
T ss_pred HHHHHHHhcCCcEEEecchhhhhhccCCCCCeeEEeeCCcccccCCCccCCccChhheEEeeCCCceEEEEEecceeEEE
Confidence 34556678899999999999753 222 346666666654443211000 0123688888888888888
Q ss_pred EEEeeCCeE
Q 031964 125 VYELIDGEV 133 (150)
Q Consensus 125 ~~~~~~~~~ 133 (150)
+|...+..+
T Consensus 314 fyD~~G~~L 322 (336)
T KOG2679|consen 314 FYDVSGKVL 322 (336)
T ss_pred EEeccCceE
Confidence 888877665
No 88
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=96.40 E-value=0.16 Score=39.78 Aligned_cols=23 Identities=9% Similarity=0.268 Sum_probs=19.1
Q ss_pred HHHHHHHhhCCCcEEEECCCCCc
Q 031964 58 DSLAMLQRQLDVDILVTGHTHQF 80 (150)
Q Consensus 58 ~~l~~~~~~~~~div~~GHtH~~ 80 (150)
+.+.++.+..+.++++-||.=.+
T Consensus 201 ~~~~~Fl~~n~l~~iiR~He~~~ 223 (271)
T smart00156 201 DAVDEFLKKNNLKLIIRAHQVVD 223 (271)
T ss_pred HHHHHHHHHCCCeEEEecCcccC
Confidence 45677888899999999998765
No 89
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=96.37 E-value=0.0099 Score=52.88 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=29.5
Q ss_pred hCCCcEEEECCCCCcceEEECCEEEEcCCCCCC
Q 031964 66 QLDVDILVTGHTHQFTAYKHEGGVVINPGSATG 98 (150)
Q Consensus 66 ~~~~div~~GHtH~~~~~~~~~~~~iNpGS~~~ 98 (150)
-.+.|+|+.||+|..+....+++.++.||+.|.
T Consensus 275 v~gID~IlgGHsH~~~~~~ingv~vvqaG~~G~ 307 (780)
T PRK09418 275 VPGVDAVLMGHSHTEVKDVFNGVPVVMPGVFGS 307 (780)
T ss_pred CCCCCEEEECCCCCcccccCCCEEEEEcChhhc
Confidence 358999999999998877788999999999986
No 90
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=96.27 E-value=0.018 Score=51.39 Aligned_cols=36 Identities=31% Similarity=0.335 Sum_probs=27.2
Q ss_pred HHhhCCCcEEEECCCCCcceE------------------EECCEEEEcCCCCCC
Q 031964 63 LQRQLDVDILVTGHTHQFTAY------------------KHEGGVVINPGSATG 98 (150)
Q Consensus 63 ~~~~~~~div~~GHtH~~~~~------------------~~~~~~~iNpGS~~~ 98 (150)
++.-.+.|+|+.||+|..+.. ..+++.++.||++|.
T Consensus 337 LA~v~GIDaIvgGHsH~~~p~~~~~~~~~~~p~vd~~~g~ingvpvVqaG~~G~ 390 (814)
T PRK11907 337 IASLSGVDAVVTGHSHAEFPSGNGTSFYAKYSGVDDINGKINGTPVTMAGKYGD 390 (814)
T ss_pred HhcCCCCCEEEECCCCCcccCccccccccccCcccccCCcCCCEEEEecChhhc
Confidence 344468999999999996521 135788999999885
No 91
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=96.23 E-value=0.12 Score=41.31 Aligned_cols=23 Identities=9% Similarity=0.187 Sum_probs=19.4
Q ss_pred HHHHHHHhhCCCcEEEECCCCCc
Q 031964 58 DSLAMLQRQLDVDILVTGHTHQF 80 (150)
Q Consensus 58 ~~l~~~~~~~~~div~~GHtH~~ 80 (150)
+.+.++++..+.++++-||.-.+
T Consensus 234 ~~~~~Fl~~n~l~~iiR~He~~~ 256 (316)
T cd07417 234 DVTKRFLEENNLEYIIRSHEVKD 256 (316)
T ss_pred HHHHHHHHHcCCcEEEECCcccc
Confidence 35678888899999999999765
No 92
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.23 E-value=0.013 Score=45.31 Aligned_cols=59 Identities=14% Similarity=0.158 Sum_probs=37.5
Q ss_pred CEEEEEecCccccc--CC--CHHHHHHHHhhCCCcEEEECCCCCcce-EEE--C---CEEEEcCCCCCC
Q 031964 40 QFKLGLCHGHQVIP--WG--DLDSLAMLQRQLDVDILVTGHTHQFTA-YKH--E---GGVVINPGSATG 98 (150)
Q Consensus 40 ~~~i~~~HG~~~~~--~~--~~~~l~~~~~~~~~div~~GHtH~~~~-~~~--~---~~~~iNpGS~~~ 98 (150)
..+|+++|..+... .. ....+.+++++.++++++|||+|.... ... + ..++.||.+--+
T Consensus 166 ~~~IV~~HhP~~~~~~~~~~~~~~~~~ll~~~~v~~vl~GH~H~~~~~~p~h~~~~~~~~~~~p~~~~~ 234 (256)
T cd07401 166 NYTIWFGHYPTSTIISPSAKSSSKFKDLLKKYNVTAYLCGHLHPLGGLEPVHYAGHPYALITNPKPSLY 234 (256)
T ss_pred CeEEEEEcccchhccCCCcchhHHHHHHHHhcCCcEEEeCCccCCCcceeeeecCCceEEEeCCCChHH
Confidence 35688888543211 11 112366677788999999999999866 222 2 356678876544
No 93
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=96.08 E-value=0.1 Score=40.76 Aligned_cols=95 Identities=17% Similarity=0.099 Sum_probs=59.5
Q ss_pred cHHHHHHHHhhCCCEEEEeCCCCCC-----------------CCCC------CeeEEEECCEEEEEec--CcccccC---
Q 031964 3 FQEVHDYLKIICPDLHIIRGEYDEE-----------------TRYP------ETKTLTIGQFKLGLCH--GHQVIPW--- 54 (150)
Q Consensus 3 ~~ev~~~l~~~~~~~~~V~GN~D~~-----------------~~lp------~~~~~~~~~~~i~~~H--G~~~~~~--- 54 (150)
++++++.|.+.+.+++.+ |||.++ ..+| ...+++.+|.+|.++= |..+.+.
T Consensus 48 ~~~~~~~L~~~GvDviT~-GNH~~Dkge~~~~i~~~~~~lrpanyp~~~pG~g~~i~~~nG~kiaVinl~G~~fm~~~~~ 126 (266)
T TIGR00282 48 TLKIYEFLKQSGVNYITM-GNHTWFQKLILDVVINQKDLVRPLNFDTSFAGKGSLVFEFNGAKIAVTNLQGTSVNLPFKT 126 (266)
T ss_pred CHHHHHHHHhcCCCEEEc-cchhccCcHHHHHHhccccccccCCCCCCCCCCCcEEEEECCEEEEEEECCCcccCCcccc
Confidence 578999999999877777 899987 1233 1245677888866644 4322211
Q ss_pred CCH-----------------------------HHHHHHHhhCCCcEEEECCCCCcceEE-E--CCEEEE-cCCCCCC
Q 031964 55 GDL-----------------------------DSLAMLQRQLDVDILVTGHTHQFTAYK-H--EGGVVI-NPGSATG 98 (150)
Q Consensus 55 ~~~-----------------------------~~l~~~~~~~~~div~~GHtH~~~~~~-~--~~~~~i-NpGS~~~ 98 (150)
.++ .....+..+.++|+|+.-|||++.... . +|+.++ -.|-+|.
T Consensus 127 ~~Pf~~~d~~i~~lk~~~d~IIVd~HaeatsEK~a~~~~ldg~vsaVvGtHtHV~TaD~~il~~gtayitD~Gm~G~ 203 (266)
T TIGR00282 127 TNPFKVLKELINMLKKDCDLIFVDFHAETTSEKNAFGMAFDGYVTAVVGTHTHVPTADLRILPKGTAYITDVGMTGP 203 (266)
T ss_pred CCHHHHHHHHHHhhhcCCCEEEEEeCCCCHHHHHHHHHHhCCCccEEEeCCCCCCCCcceeCCCCCEEEecCCcccC
Confidence 100 112223345689999999999995432 2 566654 6666664
No 94
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=96.01 E-value=0.041 Score=42.68 Aligned_cols=23 Identities=13% Similarity=0.351 Sum_probs=17.8
Q ss_pred HHHHHhhCCCcEEEECCCCCcce
Q 031964 60 LAMLQRQLDVDILVTGHTHQFTA 82 (150)
Q Consensus 60 l~~~~~~~~~div~~GHtH~~~~ 82 (150)
-.+++...++.+|++||+|-...
T Consensus 208 s~~il~~~~P~~vfsGhdH~~C~ 230 (257)
T cd08163 208 SEVILKAVQPVIAFSGDDHDYCE 230 (257)
T ss_pred HHHHHHhhCCcEEEecCCCccce
Confidence 34556667999999999998654
No 95
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=95.96 E-value=0.02 Score=49.77 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=26.4
Q ss_pred hCCCcEEEECCCCCcceE--------------EECCEEEEcCCCCCC
Q 031964 66 QLDVDILVTGHTHQFTAY--------------KHEGGVVINPGSATG 98 (150)
Q Consensus 66 ~~~~div~~GHtH~~~~~--------------~~~~~~~iNpGS~~~ 98 (150)
-.+.|+|+.||+|..+.. ..+++.++.||+.|.
T Consensus 226 v~gID~Il~GHsH~~~~~~~~~~~~~~d~~~~~i~g~~vvqaG~~G~ 272 (626)
T TIGR01390 226 VPGIDAVLFGHSHAVFPGKDFATIPGADITNGTINGVPAVMAGYWGN 272 (626)
T ss_pred CCCCCEEEcCCCCccCcCcccccCCcccccccccCCEEEEeCChhhc
Confidence 358999999999996532 246789999999885
No 96
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=95.86 E-value=0.032 Score=51.80 Aligned_cols=57 Identities=26% Similarity=0.264 Sum_probs=36.7
Q ss_pred EEEEecCccccc---CCCHHHHHHHHhh-CCCcEEEECCCCCcce--------------EEECCEEEEcCCCCCC
Q 031964 42 KLGLCHGHQVIP---WGDLDSLAMLQRQ-LDVDILVTGHTHQFTA--------------YKHEGGVVINPGSATG 98 (150)
Q Consensus 42 ~i~~~HG~~~~~---~~~~~~l~~~~~~-~~~div~~GHtH~~~~--------------~~~~~~~~iNpGS~~~ 98 (150)
-|+++|...... ........+++++ .+.|+|+.||+|..+. ...+++.++.||+.|.
T Consensus 238 II~l~H~G~~~~~~~~~~en~~~~la~~~~gID~Il~GHsH~~~~~~~~~~~~~~~~~~~~i~g~~ivqag~~g~ 312 (1163)
T PRK09419 238 IVALAHSGIESEYQSSGAEDSVYDLAEKTKGIDAIVAGHQHGLFPGADYKGVPQFDNAKGTINGIPVVMPKSWGK 312 (1163)
T ss_pred EEEEeccCcCCCCCCCCcchHHHHHHHhCCCCcEEEeCCCcccccCcccccccccccccceECCEEEEccChhhc
Confidence 466667443211 1122233455533 5899999999998654 2457899999999885
No 97
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=95.82 E-value=0.026 Score=52.35 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=31.1
Q ss_pred HHHHhh-CCCcEEEECCCCCcceEEECCEEEEcCCCCCC
Q 031964 61 AMLQRQ-LDVDILVTGHTHQFTAYKHEGGVVINPGSATG 98 (150)
Q Consensus 61 ~~~~~~-~~~div~~GHtH~~~~~~~~~~~~iNpGS~~~ 98 (150)
.++|++ .+.|+|+.||+|.......++++++.+|+.|.
T Consensus 862 ~~lA~~v~gIDvIigGHsH~~~~~~v~~~~ivqag~~g~ 900 (1163)
T PRK09419 862 LELAKKVKGVDAIISAHTHTLVDKVVNGTPVVQAYKYGR 900 (1163)
T ss_pred HHHHHhCCCCCEEEeCCCCccccccCCCEEEEeCChhHc
Confidence 344443 47999999999998777779999999999885
No 98
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=95.50 E-value=0.041 Score=48.13 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=26.5
Q ss_pred hhCCCcEEEECCCCCcceE--------------EECCEEEEcCCCCCC
Q 031964 65 RQLDVDILVTGHTHQFTAY--------------KHEGGVVINPGSATG 98 (150)
Q Consensus 65 ~~~~~div~~GHtH~~~~~--------------~~~~~~~iNpGS~~~ 98 (150)
+-.+.|+|+.||+|..+.. ..+++.++.||+.|.
T Consensus 248 ~v~gID~Il~GHsH~~~p~~~~~~~~~~d~~~g~i~g~pvv~aG~~G~ 295 (649)
T PRK09420 248 EVPGIDAIMFGHSHAVFPGKDFADIPGADIAKGTLNGVPAVMPGRWGD 295 (649)
T ss_pred cCCCCCEEEeCCCCccCcCcccccCCccccccccCCCEEEEeCChhhc
Confidence 3458999999999986421 146789999999885
No 99
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=95.29 E-value=0.073 Score=41.47 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=20.1
Q ss_pred HHHHHHhhCCCcEEEECCCCCcceEE
Q 031964 59 SLAMLQRQLDVDILVTGHTHQFTAYK 84 (150)
Q Consensus 59 ~l~~~~~~~~~div~~GHtH~~~~~~ 84 (150)
.+.+++...++.+.++||.|..+...
T Consensus 207 ~~~~ll~~lkPryhf~gH~H~~f~~~ 232 (262)
T cd00844 207 AAEELLKHLKPRYWFSAHLHVKFAAL 232 (262)
T ss_pred HHHHHHHHhCCCEEEEecCCccccee
Confidence 35567778899999999999865543
No 100
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=95.10 E-value=0.44 Score=38.27 Aligned_cols=23 Identities=9% Similarity=0.299 Sum_probs=19.6
Q ss_pred HHHHHHHhhCCCcEEEECCCCCc
Q 031964 58 DSLAMLQRQLDVDILVTGHTHQF 80 (150)
Q Consensus 58 ~~l~~~~~~~~~div~~GHtH~~ 80 (150)
+.+.++++..+.++|+=||.-.+
T Consensus 232 ~~~~~Fl~~n~l~~IiR~Hq~v~ 254 (320)
T PTZ00480 232 EIVQVFLKKHELDLICRAHQVVE 254 (320)
T ss_pred HHHHHHHHhCCCcEEEEcCcccc
Confidence 45677888899999999999875
No 101
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=95.05 E-value=0.1 Score=40.08 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=36.4
Q ss_pred CCEEEEEecCcccc---cCCCHHHHHHHHhhCCCcEEEECCCCCc-ceEEECCEEEE-cCCC
Q 031964 39 GQFKLGLCHGHQVI---PWGDLDSLAMLQRQLDVDILVTGHTHQF-TAYKHEGGVVI-NPGS 95 (150)
Q Consensus 39 ~~~~i~~~HG~~~~---~~~~~~~l~~~~~~~~~div~~GHtH~~-~~~~~~~~~~i-NpGS 95 (150)
.+.-|+++|..... |......+...+.+.++|+|+.+|+|+. .++..++++++ .-|.
T Consensus 184 ~D~vIv~~HwG~e~~~~p~~~q~~~a~~lidaGaDiIiG~HpHv~q~~E~y~~~~I~YSLGN 245 (250)
T PF09587_consen 184 ADVVIVSLHWGIEYENYPTPEQRELARALIDAGADIIIGHHPHVIQPVEIYKGKPIFYSLGN 245 (250)
T ss_pred CCEEEEEeccCCCCCCCCCHHHHHHHHHHHHcCCCEEEeCCCCcccceEEECCEEEEEeCcc
Confidence 45779999965432 2222334555556689999999999986 34555666554 4443
No 102
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=94.88 E-value=0.3 Score=38.64 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=19.5
Q ss_pred HHHHHHHhhCCCcEEEECCCCCc
Q 031964 58 DSLAMLQRQLDVDILVTGHTHQF 80 (150)
Q Consensus 58 ~~l~~~~~~~~~div~~GHtH~~ 80 (150)
+.+.++++..+.++++-||.-.+
T Consensus 223 ~~~~~Fl~~n~l~~iiR~He~~~ 245 (293)
T cd07414 223 DVVAKFLNKHDLDLICRAHQVVE 245 (293)
T ss_pred HHHHHHHHHcCCeEEEECCcccc
Confidence 45677888899999999999876
No 103
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=94.74 E-value=0.88 Score=35.89 Aligned_cols=25 Identities=8% Similarity=0.199 Sum_probs=20.4
Q ss_pred HHHHHHHHhhCCCcEEEECCCCCcc
Q 031964 57 LDSLAMLQRQLDVDILVTGHTHQFT 81 (150)
Q Consensus 57 ~~~l~~~~~~~~~div~~GHtH~~~ 81 (150)
++.+.++++..+.++++-||.-.+.
T Consensus 214 ~~~~~~Fl~~n~l~~iiR~He~~~~ 238 (285)
T cd07415 214 QDVVEEFNHNNGLTLICRAHQLVME 238 (285)
T ss_pred HHHHHHHHHHCCCeEEEEcCccccc
Confidence 3457788888999999999998753
No 104
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=94.69 E-value=1.1 Score=35.51 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.6
Q ss_pred HHHHHHHhhCCCcEEEECCCCCc
Q 031964 58 DSLAMLQRQLDVDILVTGHTHQF 80 (150)
Q Consensus 58 ~~l~~~~~~~~~div~~GHtH~~ 80 (150)
+.+.++.+..+.++++=||.-.+
T Consensus 225 ~~~~~Fl~~n~l~~iiR~Hq~~~ 247 (294)
T PTZ00244 225 DIVNDFLDMVDMDLIVRAHQVME 247 (294)
T ss_pred HHHHHHHHHcCCcEEEEcCcccc
Confidence 45778888899999999999876
No 105
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=94.31 E-value=0.13 Score=36.82 Aligned_cols=40 Identities=15% Similarity=-0.002 Sum_probs=31.0
Q ss_pred CEEEEEecCcccccC-------------CCHHHHHHHHhhCCCcEEEECCCCC
Q 031964 40 QFKLGLCHGHQVIPW-------------GDLDSLAMLQRQLDVDILVTGHTHQ 79 (150)
Q Consensus 40 ~~~i~~~HG~~~~~~-------------~~~~~l~~~~~~~~~div~~GHtH~ 79 (150)
+..|+++|-.|.... .+...++++++..++.+.+|||.|.
T Consensus 69 ~~DILlTh~wP~gi~~~~~~~~~~~~~~~GS~~i~~l~~~lkPrYhf~gh~~~ 121 (150)
T cd07380 69 GVDILLTSEWPKGISKLSKVPFEETLLICGSDLIAELAKKLKPRYHFAGLEGV 121 (150)
T ss_pred CCCEEECCCCchhhhhhCCCcccccccCCCCHHHHHHHHHcCCCeEeecCCCc
Confidence 678999998876431 1234567788889999999999997
No 106
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=94.26 E-value=1.9 Score=34.38 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=19.6
Q ss_pred HHHHHHHhhCCCcEEEECCCCCc
Q 031964 58 DSLAMLQRQLDVDILVTGHTHQF 80 (150)
Q Consensus 58 ~~l~~~~~~~~~div~~GHtH~~ 80 (150)
+.+.++.+..+.++|+=||.-.+
T Consensus 216 ~~~~~Fl~~n~l~~iiR~He~~~ 238 (303)
T PTZ00239 216 KVTKEFCRLNDLTLICRAHQLVM 238 (303)
T ss_pred HHHHHHHHHCCCcEEEEcChhhc
Confidence 45677888899999999999876
No 107
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=94.02 E-value=0.14 Score=40.81 Aligned_cols=15 Identities=20% Similarity=0.541 Sum_probs=13.2
Q ss_pred CCCcEEEECCCCCcc
Q 031964 67 LDVDILVTGHTHQFT 81 (150)
Q Consensus 67 ~~~div~~GHtH~~~ 81 (150)
.+.|+|+.||+|...
T Consensus 231 ~gIDvIigGHsH~~l 245 (313)
T cd08162 231 SGVDVIIAGGSNTLL 245 (313)
T ss_pred CCCCEEEeCCCCccC
Confidence 489999999999865
No 108
>PHA03008 hypothetical protein; Provisional
Probab=93.85 E-value=0.23 Score=37.11 Aligned_cols=57 Identities=5% Similarity=-0.067 Sum_probs=39.7
Q ss_pred CCEEEEEecCcccccC---CCHHHHHHHHhhCCCcEEEECC---CCCcceEEECCEEEEcCCC
Q 031964 39 GQFKLGLCHGHQVIPW---GDLDSLAMLQRQLDVDILVTGH---THQFTAYKHEGGVVINPGS 95 (150)
Q Consensus 39 ~~~~i~~~HG~~~~~~---~~~~~l~~~~~~~~~div~~GH---tH~~~~~~~~~~~~iNpGS 95 (150)
.+..|+++||.|+.-. -+-+.|.+...+.++.+-+||| .-.|......+..++|.--
T Consensus 160 P~tDILITHgPP~GhLD~~vGC~~Ll~~I~rVKPKyHVFGh~~~~~~p~~~~y~di~f~nsni 222 (234)
T PHA03008 160 PKCDILITASPPFAILDDDLACGDLFSKVIKIKPKFHIFNGLTQFSHPNIFIYKDIIFINSNI 222 (234)
T ss_pred CCCCEEEeCCCCccccccccCcHHHHHHHHHhCCcEEEeCCccccCCCcEEEecceEEEeccc
Confidence 3467999999987532 1223444444577899999999 3337777788999999753
No 109
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=93.36 E-value=0.19 Score=40.39 Aligned_cols=57 Identities=23% Similarity=0.291 Sum_probs=37.0
Q ss_pred cHHHHHHHHhhC----CCEEEEeCCCCCC-------------------------------CCCCCeeEEEECCEEEEEec
Q 031964 3 FQEVHDYLKIIC----PDLHIIRGEYDEE-------------------------------TRYPETKTLTIGQFKLGLCH 47 (150)
Q Consensus 3 ~~ev~~~l~~~~----~~~~~V~GN~D~~-------------------------------~~lp~~~~~~~~~~~i~~~H 47 (150)
+.||+..|..++ ..++.+||||+.. ..||...++ +.+|+++|
T Consensus 95 s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~~~~yGf~~e~~~~y~~~~~~l~~~~~~~F~~LPlaaii---~~~i~cvH 171 (321)
T cd07420 95 SIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYKLHGKKILRLLEDVFSWLPLATII---DNKILVVH 171 (321)
T ss_pred cHHHHHHHHHHhhcCCCcEEEecCchhhhhhhhhcChHHHHHHHhCccHHHHHHHHHHHHHhCCceEEE---cCCEEEEe
Confidence 568888887764 2488999999975 124433332 45699999
Q ss_pred CcccccCCCHHHHHHH
Q 031964 48 GHQVIPWGDLDSLAML 63 (150)
Q Consensus 48 G~~~~~~~~~~~l~~~ 63 (150)
|... +..+.+.+.++
T Consensus 172 GGi~-~~~~l~~i~~i 186 (321)
T cd07420 172 GGIS-DSTDLDLLDKI 186 (321)
T ss_pred CCCC-CccCHHHHHhh
Confidence 9875 33344444443
No 110
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=93.04 E-value=0.16 Score=41.69 Aligned_cols=21 Identities=10% Similarity=0.298 Sum_probs=17.4
Q ss_pred HHHHHHHhhCCCcEEEECCCC
Q 031964 58 DSLAMLQRQLDVDILVTGHTH 78 (150)
Q Consensus 58 ~~l~~~~~~~~~div~~GHtH 78 (150)
+.+.+++++.+.++||=||.=
T Consensus 274 ~~~~~FL~~n~l~~IIRsHe~ 294 (377)
T cd07418 274 DCTEEFLEKNNLKLIIRSHEG 294 (377)
T ss_pred HHHHHHHHHcCCcEEEECCCC
Confidence 356778888999999999993
No 111
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=92.81 E-value=0.13 Score=40.88 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=19.3
Q ss_pred cHHHHHHHHhhC----CCEEEEeCCCCCC
Q 031964 3 FQEVHDYLKIIC----PDLHIIRGEYDEE 27 (150)
Q Consensus 3 ~~ev~~~l~~~~----~~~~~V~GN~D~~ 27 (150)
+.|++..|..+. ..++.++||||..
T Consensus 86 s~Evi~lL~~lki~~p~~v~lLRGNHE~~ 114 (305)
T cd07416 86 SIECVLYLWALKILYPKTLFLLRGNHECR 114 (305)
T ss_pred hHHHHHHHHHHHhhcCCCEEEEeCCCcHH
Confidence 567888888764 2588999999974
No 112
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=92.48 E-value=0.19 Score=40.03 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=19.5
Q ss_pred cHHHHHHHHhhC----CCEEEEeCCCCCC
Q 031964 3 FQEVHDYLKIIC----PDLHIIRGEYDEE 27 (150)
Q Consensus 3 ~~ev~~~l~~~~----~~~~~V~GN~D~~ 27 (150)
+.||+..|..+. ..++.++||||..
T Consensus 99 s~evl~ll~~lk~~~p~~v~lLRGNHE~~ 127 (311)
T cd07419 99 SLETICLLLALKVKYPNQIHLIRGNHEDR 127 (311)
T ss_pred hHHHHHHHHHhhhcCCCcEEEeccccchH
Confidence 568888887765 2578999999964
No 113
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=91.98 E-value=0.78 Score=38.43 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=45.2
Q ss_pred HHHHHHhhCCCcEEEECCCCCcceEE------------------ECCEEEEcCCCCCCCCCCC-----------CCCCCC
Q 031964 59 SLAMLQRQLDVDILVTGHTHQFTAYK------------------HEGGVVINPGSATGAFSSI-----------TYDVNP 109 (150)
Q Consensus 59 ~l~~~~~~~~~div~~GHtH~~~~~~------------------~~~~~~iNpGS~~~~~~~~-----------~~~~~~ 109 (150)
.|+.++-+.++|+++.||-|...... -.+...|.+|+.|+.-+.. -+....
T Consensus 323 ~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~~~~~~~~~~~d~~aPvyI~~G~~G~~e~~~~~~~~~p~~Sa~R~~df 402 (452)
T KOG1378|consen 323 GLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTCGTGWGPVHLVDGMAPIYITVGDGGNHEHLDPFSSPQPEWSAFREGDF 402 (452)
T ss_pred HHHHHHHHhceeEEEeccceehhccchhhcceeeccCCcccccCCCCCEEEEEccCCcccccCcccCCCCcccccccccC
Confidence 57888888999999999999753211 1246788899988542111 123335
Q ss_pred cEEEEEEeCCe-EEEEEEEe
Q 031964 110 SFVLMDIDGLR-VVVYVYEL 128 (150)
Q Consensus 110 s~~il~~~~~~-i~v~~~~~ 128 (150)
.|++|++.+.+ .....++.
T Consensus 403 G~~~L~v~N~TH~~~~~~~~ 422 (452)
T KOG1378|consen 403 GYTRLTAKNGTHAHVHWVRN 422 (452)
T ss_pred CeEEEEEecCceEEEEEEec
Confidence 67888888765 44444444
No 114
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=90.97 E-value=0.36 Score=41.00 Aligned_cols=30 Identities=20% Similarity=0.468 Sum_probs=24.2
Q ss_pred CcEEEECCCCCcceE-----EECCEEEEcCCCCCC
Q 031964 69 VDILVTGHTHQFTAY-----KHEGGVVINPGSATG 98 (150)
Q Consensus 69 ~div~~GHtH~~~~~-----~~~~~~~iNpGS~~~ 98 (150)
.|+++.||+|..... ..++++++.+|+.|.
T Consensus 236 iD~i~~GH~H~~~~~~~~~~~~~~t~ivqag~~gk 270 (517)
T COG0737 236 IDLIIGGHSHTVFPGGDKPGTVNGTPIVQAGEYGK 270 (517)
T ss_pred cceEeccCCcccccCCcccCccCCEEEEccChhhC
Confidence 899999999964322 347899999999985
No 115
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=90.70 E-value=0.25 Score=37.33 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=20.8
Q ss_pred cHHHHHHHHhhC--CCEEEEeCCCCCC
Q 031964 3 FQEVHDYLKIIC--PDLHIIRGEYDEE 27 (150)
Q Consensus 3 ~~ev~~~l~~~~--~~~~~V~GN~D~~ 27 (150)
|.+|++.|+++. .++++|+||||..
T Consensus 50 S~~vl~~l~~l~~~~~~~~l~GNHE~~ 76 (222)
T cd07413 50 IRELLEIVKSMVDAGHALAVMGNHEFN 76 (222)
T ss_pred HHHHHHHHHHhhcCCCEEEEEccCcHH
Confidence 689999999875 3589999999964
No 116
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=89.52 E-value=1.3 Score=34.65 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=19.0
Q ss_pred HHHHHHHhhCC--CcEEEECCCCCcceEE
Q 031964 58 DSLAMLQRQLD--VDILVTGHTHQFTAYK 84 (150)
Q Consensus 58 ~~l~~~~~~~~--~div~~GHtH~~~~~~ 84 (150)
+.+.+++++.. ...+++||+|......
T Consensus 237 ~~~~~ii~~y~~~i~~~~~GH~H~d~~~~ 265 (296)
T cd00842 237 ERYLQIINRYSDTIAGQFFGHTHRDEFRV 265 (296)
T ss_pred HHHHHHHHHHHHhhheeeecccccceEEE
Confidence 45666666655 5678999999976554
No 117
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=86.98 E-value=5.2 Score=33.93 Aligned_cols=25 Identities=20% Similarity=0.318 Sum_probs=17.9
Q ss_pred HHHHHHhhC-CCcEEEECCCCCcceE
Q 031964 59 SLAMLQRQL-DVDILVTGHTHQFTAY 83 (150)
Q Consensus 59 ~l~~~~~~~-~~div~~GHtH~~~~~ 83 (150)
+|.+++..+ ++-.++|||.|+..+.
T Consensus 389 eLlaLL~~hPnVla~LsGHvHrn~v~ 414 (492)
T TIGR03768 389 GLVTTLQKYPNLLMWIAGHRHLNTVK 414 (492)
T ss_pred HHHHHHhcCCCeEEEEcCCccccccc
Confidence 455555554 5778999999987654
No 118
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=86.48 E-value=2.1 Score=33.49 Aligned_cols=42 Identities=10% Similarity=0.183 Sum_probs=29.3
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCC----------------------------CCCCeeEEEECCEEEEEe
Q 031964 4 QEVHDYLKIICPDLHIIRGEYDEET----------------------------RYPETKTLTIGQFKLGLC 46 (150)
Q Consensus 4 ~ev~~~l~~~~~~~~~V~GN~D~~~----------------------------~lp~~~~~~~~~~~i~~~ 46 (150)
..+++.++.++.++. +.||||++. .++...+++.+|.||.++
T Consensus 65 ~~~~~~~n~~g~Da~-~~GNHEfD~G~~~L~~~~~~~~fp~l~aNv~~~~g~~~~~p~~i~~~~G~kIgvi 134 (285)
T cd07405 65 EPDFRGMNLVGYDAM-AVGNHEFDNPLEVLRQQMKWANFPLLSANIYQESGERLFKPYALFDLGGLKIAVI 134 (285)
T ss_pred chHHHHHHhhCCcEE-eecccccccCHHHHHHHHhhCCCCEEEEEEEecCCCCccCCeEEEEECCEEEEEE
Confidence 346788888886554 559999980 123346778899998876
No 119
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=86.06 E-value=0.84 Score=34.59 Aligned_cols=23 Identities=13% Similarity=0.057 Sum_probs=16.3
Q ss_pred HHHHHHHhh-CCCEEEEeCCCCCC
Q 031964 5 EVHDYLKII-CPDLHIIRGEYDEE 27 (150)
Q Consensus 5 ev~~~l~~~-~~~~~~V~GN~D~~ 27 (150)
+.++.+.++ ..++++|+||||.+
T Consensus 51 ~~~~~l~~~~~~pv~~v~GNHD~~ 74 (239)
T TIGR03729 51 PFIEKLQELKGIKVTFNAGNHDML 74 (239)
T ss_pred HHHHHHHHhcCCcEEEECCCCCCC
Confidence 445556553 25799999999975
No 120
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=85.79 E-value=2.2 Score=33.06 Aligned_cols=43 Identities=12% Similarity=0.017 Sum_probs=30.6
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCC-----------------------------CCCCeeEEEEC-CEEEEEec
Q 031964 4 QEVHDYLKIICPDLHIIRGEYDEET-----------------------------RYPETKTLTIG-QFKLGLCH 47 (150)
Q Consensus 4 ~ev~~~l~~~~~~~~~V~GN~D~~~-----------------------------~lp~~~~~~~~-~~~i~~~H 47 (150)
..+++.|+.++.+ +++.||||++. .++...+++++ |.||.++=
T Consensus 73 ~~~~~~ln~~g~d-~~~lGNHe~d~g~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g~kVgviG 145 (277)
T cd07410 73 HPMIAAMNALGYD-AGTLGNHEFNYGLDYLDKVIKQANFPVLSANVIDADTGEPFLKPYVILERDVGVKVGIIG 145 (277)
T ss_pred ChHHHHHHhcCCC-EEeecccCcccCHHHHHHHHHhCCCCEEEEEEEeCCCCCcccCCEEEEEecCCCEEEEEe
Confidence 4578899998864 55679999870 12234577889 99988774
No 121
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=85.42 E-value=0.63 Score=37.08 Aligned_cols=25 Identities=20% Similarity=0.192 Sum_probs=19.9
Q ss_pred cHHHHHHHHhhCC-----CEEEEeCCCCCC
Q 031964 3 FQEVHDYLKIICP-----DLHIIRGEYDEE 27 (150)
Q Consensus 3 ~~ev~~~l~~~~~-----~~~~V~GN~D~~ 27 (150)
+.+|++.|.++.. ++++++||||..
T Consensus 51 S~eVld~L~~l~~~~~~~~vv~LrGNHE~~ 80 (304)
T cd07421 51 TRKVIDFLISLPEKHPKQRHVFLCGNHDFA 80 (304)
T ss_pred HHHHHHHHHHhhhcccccceEEEecCChHH
Confidence 5789999988642 478999999965
No 122
>PHA02239 putative protein phosphatase
Probab=84.66 E-value=0.88 Score=34.82 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=18.9
Q ss_pred cHHHHHHHHhh---CCCEEEEeCCCCCC
Q 031964 3 FQEVHDYLKII---CPDLHIIRGEYDEE 27 (150)
Q Consensus 3 ~~ev~~~l~~~---~~~~~~V~GN~D~~ 27 (150)
+.++++.|.++ ..++++|+||||..
T Consensus 46 s~~v~~~l~~~~~~~~~~~~l~GNHE~~ 73 (235)
T PHA02239 46 SKDVVNYIFDLMSNDDNVVTLLGNHDDE 73 (235)
T ss_pred hHHHHHHHHHHhhcCCCeEEEECCcHHH
Confidence 56788887664 24689999999964
No 123
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=83.27 E-value=2.7 Score=32.30 Aligned_cols=23 Identities=9% Similarity=0.219 Sum_probs=17.7
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCC
Q 031964 4 QEVHDYLKIICPDLHIIRGEYDEE 27 (150)
Q Consensus 4 ~ev~~~l~~~~~~~~~V~GN~D~~ 27 (150)
..+++.++.++.++ .+.||||++
T Consensus 60 ~~~~~~ln~~g~d~-~~~GNHefd 82 (257)
T cd07408 60 ETIIKIMNAVGYDA-VTPGNHEFD 82 (257)
T ss_pred cHHHHHHHhcCCcE-Ecccccccc
Confidence 45778888888655 567999987
No 124
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=82.12 E-value=3.2 Score=35.59 Aligned_cols=42 Identities=10% Similarity=0.094 Sum_probs=29.3
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCC-----------------------------CCCCeeEEEECCEEEEEe
Q 031964 4 QEVHDYLKIICPDLHIIRGEYDEET-----------------------------RYPETKTLTIGQFKLGLC 46 (150)
Q Consensus 4 ~ev~~~l~~~~~~~~~V~GN~D~~~-----------------------------~lp~~~~~~~~~~~i~~~ 46 (150)
..+++.++.++.++. +.||||++. .++...+++.+|.||.++
T Consensus 99 ~~~i~~mN~~g~Da~-tlGNHEFD~G~~~L~~~~~~a~fp~l~aNv~~~~~g~~~~~py~i~~~~G~kIgii 169 (551)
T PRK09558 99 EPDFRGMNLIGYDAM-AVGNHEFDNPLSVLRKQEKWAKFPFLSANIYQKSTGERLFKPYAIFDRQGLKIAVI 169 (551)
T ss_pred chhHHHHhcCCCCEE-cccccccCcCHHHHHHhhccCCCCEEEEEEEECCCCCcccCCeEEEEECCEEEEEE
Confidence 356788888886544 459999980 123455678899997765
No 125
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=80.54 E-value=2.5 Score=32.41 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=16.4
Q ss_pred cHHHHHHHHhhC----CCEEEEeCCCCCC
Q 031964 3 FQEVHDYLKIIC----PDLHIIRGEYDEE 27 (150)
Q Consensus 3 ~~ev~~~l~~~~----~~~~~V~GN~D~~ 27 (150)
|.|+...|.-+. .++..+||||+..
T Consensus 89 SLEtfT~l~~LkaryP~~ITLlRGNHEsR 117 (306)
T KOG0373|consen 89 SLETFTLLLLLKARYPAKITLLRGNHESR 117 (306)
T ss_pred cHHHHHHHHHHhhcCCceeEEeeccchhh
Confidence 345555555443 3588999999975
No 126
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=80.23 E-value=26 Score=27.32 Aligned_cols=95 Identities=20% Similarity=0.144 Sum_probs=50.9
Q ss_pred cHHHHHHHHhhCCCEEEEeCCCCCC-----------------CCCCC------eeEEEECCEEEEEec--CcccccCC-C
Q 031964 3 FQEVHDYLKIICPDLHIIRGEYDEE-----------------TRYPE------TKTLTIGQFKLGLCH--GHQVIPWG-D 56 (150)
Q Consensus 3 ~~ev~~~l~~~~~~~~~V~GN~D~~-----------------~~lp~------~~~~~~~~~~i~~~H--G~~~~~~~-~ 56 (150)
+++.++.|.+.+.+ ..-.|||=++ ..+|. ..+++.++.++.++- |..+++.. .
T Consensus 45 t~~~~~~L~~~GvD-viT~GNH~wdkkei~~~i~~~~~ilRPaN~p~~~pG~G~~i~~~~g~kv~ViNl~Gr~fm~~~~~ 123 (253)
T PF13277_consen 45 TPKIAEELFKAGVD-VITMGNHIWDKKEIFDFIDKEPRILRPANYPPGTPGRGYRIFEKNGKKVAVINLMGRVFMPPIDC 123 (253)
T ss_dssp -HHHHHHHHHHT-S-EEE--TTTTSSTTHHHHHHH-SSEE--TTS-TT-SSBSEEEEEETTEEEEEEEEE--TTS---S-
T ss_pred CHHHHHHHHhcCCC-EEecCcccccCcHHHHHHhcCCCcEECCCCCCCCCcCcEEEEEECCEEEEEEECcccccCCCCCC
Confidence 57788889988864 5678999876 24554 357788999988887 33332110 0
Q ss_pred H-------------------------HHHHH----HHhhCCCcEEEECCCCCcceEEE---CCEEEE-cCCCCCC
Q 031964 57 L-------------------------DSLAM----LQRQLDVDILVTGHTHQFTAYKH---EGGVVI-NPGSATG 98 (150)
Q Consensus 57 ~-------------------------~~l~~----~~~~~~~div~~GHtH~~~~~~~---~~~~~i-NpGS~~~ 98 (150)
+ ..-++ +..+.++..|+--|||+|-.... +|+-+| -.|.+|.
T Consensus 124 PF~~~d~~l~~l~~~~~~iiVDFHAEaTSEK~A~g~~lDGrvsaV~GTHTHVqTaDerILp~GTaYiTDvGMtG~ 198 (253)
T PF13277_consen 124 PFRAADRLLEELKEETDIIIVDFHAEATSEKQAMGWYLDGRVSAVVGTHTHVQTADERILPGGTAYITDVGMTGP 198 (253)
T ss_dssp HHHHHHHHHHH-----SEEEEEEE-S-HHHHHHHHHHHBTTBSEEEEESSSS-BS--EE-TTS-EEES---EBEE
T ss_pred hHHHHHHHHHhccccCCEEEEEeecCcHHHHHHHHHHhCCcEEEEEeCCCCccCchhhccCCCCEEEecCccccC
Confidence 0 01111 22355899999999999965432 466665 4555543
No 127
>PLN02533 probable purple acid phosphatase
Probab=77.91 E-value=20 Score=29.86 Aligned_cols=34 Identities=12% Similarity=0.150 Sum_probs=22.8
Q ss_pred CCEEEEeCCCCCCC----------------CCC---------CeeEEEECCEEEEEecC
Q 031964 15 PDLHIIRGEYDEET----------------RYP---------ETKTLTIGQFKLGLCHG 48 (150)
Q Consensus 15 ~~~~~V~GN~D~~~----------------~lp---------~~~~~~~~~~~i~~~HG 48 (150)
.|+++++||||... .+| ....++.++.++++.=.
T Consensus 199 ~P~m~~~GNHE~~~~~~~~~~~f~~y~~rf~mP~~~~g~~~~~yYSfd~g~vhfI~Lds 257 (427)
T PLN02533 199 RPWMVTHGNHELEKIPILHPEKFTAYNARWRMPFEESGSTSNLYYSFNVYGVHIIMLGS 257 (427)
T ss_pred CceEEeCccccccccccccCcCccchhhcccCCccccCCCCCceEEEEECCEEEEEEeC
Confidence 46999999999631 123 13457788888777643
No 128
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=76.97 E-value=5 Score=31.34 Aligned_cols=13 Identities=23% Similarity=0.555 Sum_probs=10.9
Q ss_pred CCEEEEeCCCCCC
Q 031964 15 PDLHIIRGEYDEE 27 (150)
Q Consensus 15 ~~~~~V~GN~D~~ 27 (150)
.++..+||||+..
T Consensus 102 ~ritLiRGNHEsR 114 (303)
T KOG0372|consen 102 DRITLIRGNHESR 114 (303)
T ss_pred ceeEEeeccchhh
Confidence 4589999999975
No 129
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=70.77 E-value=49 Score=25.87 Aligned_cols=44 Identities=20% Similarity=0.290 Sum_probs=32.2
Q ss_pred cHHHHHHHHhhCCCEEEEeCCCCCC-----------------CCCCC------eeEEEECCEEEEEec
Q 031964 3 FQEVHDYLKIICPDLHIIRGEYDEE-----------------TRYPE------TKTLTIGQFKLGLCH 47 (150)
Q Consensus 3 ~~ev~~~l~~~~~~~~~V~GN~D~~-----------------~~lp~------~~~~~~~~~~i~~~H 47 (150)
+++.++.|.+.+.+ +.-.|||=++ ..+|. ..+++.+|.++.++-
T Consensus 48 t~k~y~~l~~~G~d-viT~GNH~wd~~ei~~~i~~~~~ilRP~N~p~~~~G~G~~~f~~ng~ki~V~N 114 (266)
T COG1692 48 TEKIYKELLEAGAD-VITLGNHTWDQKEILDFIDNADRILRPANYPDGTPGKGSRIFKINGKKLAVIN 114 (266)
T ss_pred CHHHHHHHHHhCCC-EEecccccccchHHHHHhhcccceeccCCCCCCCCcceEEEEEeCCcEEEEEE
Confidence 56788888888864 5678999776 23443 357788899988876
No 130
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=70.45 E-value=2.6 Score=32.38 Aligned_cols=14 Identities=14% Similarity=0.083 Sum_probs=12.1
Q ss_pred CCCEEEEeCCCCCC
Q 031964 14 CPDLHIIRGEYDEE 27 (150)
Q Consensus 14 ~~~~~~V~GN~D~~ 27 (150)
..|+++++||||..
T Consensus 70 ~~P~~~v~GNHD~~ 83 (277)
T cd07378 70 QVPWYLVLGNHDYS 83 (277)
T ss_pred cCCeEEecCCcccC
Confidence 46799999999975
No 131
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=69.13 E-value=5.7 Score=31.24 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=20.3
Q ss_pred cHHHHHHHHhhC----CCEEEEeCCCCCC
Q 031964 3 FQEVHDYLKIIC----PDLHIIRGEYDEE 27 (150)
Q Consensus 3 ~~ev~~~l~~~~----~~~~~V~GN~D~~ 27 (150)
|-|++..|-.++ .++.+++|||+-.
T Consensus 103 SvetVS~lva~Kvry~~rvtilrGNHEsr 131 (319)
T KOG0371|consen 103 SVETVSLLVALKVRYPDRVTILRGNHESR 131 (319)
T ss_pred hHHHHHHHHHhhccccceeEEecCchHHH
Confidence 567888888877 5689999999954
No 132
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=67.16 E-value=66 Score=26.04 Aligned_cols=67 Identities=16% Similarity=0.095 Sum_probs=39.2
Q ss_pred HHHHHHHhhCCCcEEEECCCCCcc-eEEECCEEEEcCCCCCCCCCCCCCCCCCcEEEEEEeCCeEEEEEEEee
Q 031964 58 DSLAMLQRQLDVDILVTGHTHQFT-AYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELI 129 (150)
Q Consensus 58 ~~l~~~~~~~~~div~~GHtH~~~-~~~~~~~~~iNpGS~~~~~~~~~~~~~~s~~il~~~~~~i~v~~~~~~ 129 (150)
+.++++....+.|+|+-+|-=++. .+...++.++..-|+-. +. +.-....|++.++++.. +.+..++
T Consensus 234 ~~v~~f~~~~~ldlivRaHqvv~dGyeffa~r~lvTIFSAP~--Yc--g~~~n~gavm~Vd~~l~-~sf~~l~ 301 (331)
T KOG0374|consen 234 AVVEDFCKKLDLDLIVRAHQVVEDGYEFFAGRKLVTIFSAPN--YC--GEFDNAGAVMRVDKNLK-CSFVILR 301 (331)
T ss_pred HHHHHHHHHhCcceEEEcCccccccceEecCceEEEEecCch--hc--cccCCceEEEEECCCCe-EEEEEec
Confidence 356777788899999999987763 33445554554444322 11 12234468888877643 3444333
No 133
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=66.48 E-value=4 Score=29.51 Aligned_cols=70 Identities=7% Similarity=-0.001 Sum_probs=35.3
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCCCCCeeEEEECCEEEEEecCcccccCCCHHHHHHHHhhCCCcEEEECC
Q 031964 6 VHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGH 76 (150)
Q Consensus 6 v~~~l~~~~~~~~~V~GN~D~~~~lp~~~~~~~~~~~i~~~HG~~~~~~~~~~~l~~~~~~~~~div~~GH 76 (150)
+++...+.+.+++.+-|.-+....+-....-...+.+|.-+|-.++ .....+.+.+.+...++|+++.|=
T Consensus 40 l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f-~~~~~~~i~~~I~~~~pdiv~vgl 109 (172)
T PF03808_consen 40 LLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYF-DEEEEEAIINRINASGPDIVFVGL 109 (172)
T ss_pred HHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCC-ChhhHHHHHHHHHHcCCCEEEEEC
Confidence 3333334434455555544332111111222344777776663333 222344566666778999998873
No 134
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=66.02 E-value=8.3 Score=30.50 Aligned_cols=58 Identities=21% Similarity=0.242 Sum_probs=36.1
Q ss_pred ECCEEEEEecCcccc-----c------CCCHHHHHHHHhhCCCcEEEECCCCCcceEE-ECCEEEEcCCC
Q 031964 38 IGQFKLGLCHGHQVI-----P------WGDLDSLAMLQRQLDVDILVTGHTHQFTAYK-HEGGVVINPGS 95 (150)
Q Consensus 38 ~~~~~i~~~HG~~~~-----~------~~~~~~l~~~~~~~~~div~~GHtH~~~~~~-~~~~~~iNpGS 95 (150)
-++..++++|..|.. + ++..+.+....+..+..+-++||.|...-.. .+.+.++|.-.
T Consensus 211 p~~iDvL~tHtPPlG~gd~~~~~~gqr~GC~ell~tVe~rvqpk~hVfGhvhe~~Gvta~G~t~fina~~ 280 (305)
T KOG3947|consen 211 PGGIDVLITHTPPLGHGDLVPVFSGQRNGCVELLNTVERRVQPKYHVFGHVHEGHGVTADGYTTFINAEL 280 (305)
T ss_pred ccccceeccCCCCCCcchhcccccCcccCHHHHHHhHhhccccceEEeeeeecCceeeecCccccccHHH
Confidence 456788899975542 1 1122334444445688999999999975433 45566677654
No 135
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=64.80 E-value=7.1 Score=30.00 Aligned_cols=13 Identities=31% Similarity=0.192 Sum_probs=11.3
Q ss_pred CCEEEEeCCCCCC
Q 031964 15 PDLHIIRGEYDEE 27 (150)
Q Consensus 15 ~~~~~V~GN~D~~ 27 (150)
.+++.|+||||.+
T Consensus 77 ~p~~~v~GNHD~~ 89 (256)
T cd07401 77 EKWFDIRGNHDLF 89 (256)
T ss_pred ceEEEeCCCCCcC
Confidence 4689999999975
No 136
>PRK09982 universal stress protein UspD; Provisional
Probab=61.61 E-value=9.5 Score=26.21 Aligned_cols=32 Identities=31% Similarity=0.524 Sum_probs=22.5
Q ss_pred EEEEEecCcccccCCCHHHHHHHHhhCCCcEEEECCCCC
Q 031964 41 FKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQ 79 (150)
Q Consensus 41 ~~i~~~HG~~~~~~~~~~~l~~~~~~~~~div~~GHtH~ 79 (150)
....+..|++ .+.+.+.+++.++|+|+.|| |.
T Consensus 82 ~~~~v~~G~p------~~~I~~~A~~~~aDLIVmG~-~~ 113 (142)
T PRK09982 82 TKLRIERGEM------PETLLEIMQKEQCDLLVCGH-HH 113 (142)
T ss_pred ceEEEEecCH------HHHHHHHHHHcCCCEEEEeC-Ch
Confidence 4445555643 34566778899999999997 64
No 137
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=58.38 E-value=5.7 Score=28.71 Aligned_cols=38 Identities=18% Similarity=0.116 Sum_probs=22.9
Q ss_pred EECCEEEEEecCcccccCCCHHHHHHHHhhCCCcEEEEC
Q 031964 37 TIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTG 75 (150)
Q Consensus 37 ~~~~~~i~~~HG~~~~~~~~~~~l~~~~~~~~~div~~G 75 (150)
...+.+|.-.|..++.+. ..+.+.+.+...++|+|+.|
T Consensus 69 ~yp~l~i~g~~~g~~~~~-~~~~i~~~I~~~~pdiv~vg 106 (171)
T cd06533 69 RYPGLKIVGYHHGYFGPE-EEEEIIERINASGADILFVG 106 (171)
T ss_pred HCCCcEEEEecCCCCChh-hHHHHHHHHHHcCCCEEEEE
Confidence 355777776653333222 22335566677889999887
No 138
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=57.83 E-value=16 Score=26.11 Aligned_cols=57 Identities=25% Similarity=0.343 Sum_probs=34.8
Q ss_pred EEEEecCccccc--------CC--CHH----HHHHHHhhCCCcEEEECCCCCcc-------eEEECCEEEEcCCCCCC
Q 031964 42 KLGLCHGHQVIP--------WG--DLD----SLAMLQRQLDVDILVTGHTHQFT-------AYKHEGGVVINPGSATG 98 (150)
Q Consensus 42 ~i~~~HG~~~~~--------~~--~~~----~l~~~~~~~~~div~~GHtH~~~-------~~~~~~~~~iNpGS~~~ 98 (150)
+|++.||.-.+- .+ +.+ .+.+.+++.+.++-++=--|.-. ....-+.++||||+.+.
T Consensus 3 ~ilvinGPNLN~LG~REp~iYG~~tl~~i~~~~~~~a~~~g~~~~~~QSN~EGelId~i~~a~~~~dgiIINpga~TH 80 (146)
T PRK13015 3 KILVLNGPNLNLLGTREPAIYGHETLADVEALCRAAAEALGLEVEFRQSNHEGELIDWIHEARGDVAGIVINPGAYTH 80 (146)
T ss_pred EEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhhhcCCEEEEcchHHhh
Confidence 689999864421 11 222 34555666778888777666531 11123568999999885
No 139
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=57.46 E-value=21 Score=30.25 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=31.1
Q ss_pred CcEEEECCCCCcceE-EECCEEEEcCCCCCCCCCCCCCCCCCcEEEEEEeCCe
Q 031964 69 VDILVTGHTHQFTAY-KHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLR 120 (150)
Q Consensus 69 ~div~~GHtH~~~~~-~~~~~~~iNpGS~~~~~~~~~~~~~~s~~il~~~~~~ 120 (150)
+|+++.+-+-.++.. ...|..++||||.... ..+|-+.=....+
T Consensus 473 Pdlmvl~Ds~~sf~~vt~~gC~v~NPGSF~~s--------~~~f~vy~P~~k~ 517 (525)
T KOG3818|consen 473 PDLMVLADSFSSFFDVTYAGCIVINPGSFSRS--------NYTFKVYYPSQKT 517 (525)
T ss_pred cceEEeecccccccccccCCceeeCCCccccc--------ceeEEEEecccce
Confidence 677788888777655 5679999999998763 3566665544443
No 140
>COG2843 PgsA Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]
Probab=57.08 E-value=26 Score=28.91 Aligned_cols=51 Identities=22% Similarity=0.239 Sum_probs=31.2
Q ss_pred EEEEEec-Ccccc--cCCCHHHHHHHHhhCCCcEEEECCCCCc-ceEEE-CCEEEE
Q 031964 41 FKLGLCH-GHQVI--PWGDLDSLAMLQRQLDVDILVTGHTHQF-TAYKH-EGGVVI 91 (150)
Q Consensus 41 ~~i~~~H-G~~~~--~~~~~~~l~~~~~~~~~div~~GHtH~~-~~~~~-~~~~~i 91 (150)
.-|.+.| |+.+. |...+.++...+...++|+|+.+|.|.+ -++.. +++.++
T Consensus 226 lviv~~HwG~ey~~~p~~~q~~~a~~lidAGa~iIvGhhpHvlqpiE~~~~~~~I~ 281 (372)
T COG2843 226 LVIVQPHWGVEYAYEPAAGQRALARRLIDAGADIIVGHHPHVLQPIEIYIQGKPIL 281 (372)
T ss_pred EEEEeccccccccCCCcHHHHHHHHHHHhcCcCeEecCCCCcCcceEEecCCcEEE
Confidence 4455556 33332 2223445555556789999999999987 35555 455553
No 141
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=53.62 E-value=40 Score=27.02 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=19.4
Q ss_pred CcEEEECCCCCcceEEECCEEEEcCCCC
Q 031964 69 VDILVTGHTHQFTAYKHEGGVVINPGSA 96 (150)
Q Consensus 69 ~div~~GHtH~~~~~~~~~~~~iNpGS~ 96 (150)
.-+|++||| ......++++.|-.|..
T Consensus 255 ~~~VVhGHt--~~~~~~~~Ri~iDtGa~ 280 (304)
T cd07421 255 KTIVVSGHH--GKLHIDGLRLIIDEGGG 280 (304)
T ss_pred CeEEEECCC--CCceecCCEEEEECCCC
Confidence 348999999 44455678888988864
No 142
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=52.97 E-value=16 Score=28.41 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=16.5
Q ss_pred HHHHHHHhh--CCCEEEEeCCCCCC
Q 031964 5 EVHDYLKII--CPDLHIIRGEYDEE 27 (150)
Q Consensus 5 ev~~~l~~~--~~~~~~V~GN~D~~ 27 (150)
.+.+.+++. ..+++.+.||||..
T Consensus 98 ~~~~~l~~~~~~~pv~~~~GNHD~~ 122 (296)
T cd00842 98 NLTSLLKKAFPDTPVYPALGNHDSY 122 (296)
T ss_pred HHHHHHHHhCCCCCEEEcCCCCCCC
Confidence 345556654 25799999999985
No 143
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=52.30 E-value=21 Score=25.25 Aligned_cols=57 Identities=25% Similarity=0.403 Sum_probs=33.4
Q ss_pred EEEEecCcccc------c--C--CCHH----HHHHHHhhCCCcEEEECCCCCcc-------eEEECCEEEEcCCCCCC
Q 031964 42 KLGLCHGHQVI------P--W--GDLD----SLAMLQRQLDVDILVTGHTHQFT-------AYKHEGGVVINPGSATG 98 (150)
Q Consensus 42 ~i~~~HG~~~~------~--~--~~~~----~l~~~~~~~~~div~~GHtH~~~-------~~~~~~~~~iNpGS~~~ 98 (150)
||++.||.-.+ | . .+.+ .+.+.+++.+.++-++=--|.-. ....-+.++||||+.+.
T Consensus 1 ~ilvlnGPNLNlLG~REp~iYG~~tl~di~~~~~~~a~~~g~~v~~~QSN~EGelId~i~~a~~~~dgiIINpga~TH 78 (141)
T TIGR01088 1 KILVLNGPNLNMLGLREPGVYGSQTLEEIVEIIETFAAQLNVELEFFQSNSEGQLIDKIHEAEGQYDGIIINPGALTH 78 (141)
T ss_pred CEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhccccCCEEEEcChHHhh
Confidence 57888986432 1 1 1222 34455666677777776666421 11123568999999885
No 144
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=52.05 E-value=15 Score=27.03 Aligned_cols=37 Identities=14% Similarity=0.328 Sum_probs=24.5
Q ss_pred CCEEEEeCCCCCCC--CC----------------------CCeeEEEECCEEEEEecCccc
Q 031964 15 PDLHIIRGEYDEET--RY----------------------PETKTLTIGQFKLGLCHGHQV 51 (150)
Q Consensus 15 ~~~~~V~GN~D~~~--~l----------------------p~~~~~~~~~~~i~~~HG~~~ 51 (150)
.+++.|+|++|... .+ +.-..+.++|.+|++++++..
T Consensus 79 ~~vvlvPg~~D~~~~~~lPq~pl~~~~~~~~~~~~~~~~~sNP~~~~i~~~~i~~~s~d~~ 139 (209)
T PF04042_consen 79 TQVVLVPGPNDPTSSPVLPQPPLHSKLFPKLKKYSNIHFVSNPCRISINGQEIGVTSGDIL 139 (209)
T ss_dssp SEEEEE--TTCTT-S-SCSB----TTTTCHHCTTTTEEE--CSEEEEETTEEEEE-SSHHH
T ss_pred cEEEEeCCCccccccCCCCCCCCCHHHHhhhhhcCceEEeCCCeEEEEeCCcEEEECCcHH
Confidence 46899999999862 11 223577899999999998753
No 145
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=51.03 E-value=9.9 Score=31.51 Aligned_cols=15 Identities=13% Similarity=0.184 Sum_probs=12.5
Q ss_pred hCCCEEEEeCCCCCC
Q 031964 13 ICPDLHIIRGEYDEE 27 (150)
Q Consensus 13 ~~~~~~~V~GN~D~~ 27 (150)
+..|+++|.||||+.
T Consensus 95 L~~Pwy~vLGNHDy~ 109 (394)
T PTZ00422 95 MQIPFFTVLGQADWD 109 (394)
T ss_pred hCCCeEEeCCccccc
Confidence 446899999999974
No 146
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=50.39 E-value=27 Score=24.90 Aligned_cols=58 Identities=24% Similarity=0.327 Sum_probs=34.3
Q ss_pred EEEEEecCccccc--------C--CCHH----HHHHHHhhCCCcEEEECCCCCcc-------eEEECCEEEEcCCCCCC
Q 031964 41 FKLGLCHGHQVIP--------W--GDLD----SLAMLQRQLDVDILVTGHTHQFT-------AYKHEGGVVINPGSATG 98 (150)
Q Consensus 41 ~~i~~~HG~~~~~--------~--~~~~----~l~~~~~~~~~div~~GHtH~~~-------~~~~~~~~~iNpGS~~~ 98 (150)
.+|++.||.-.+- . .+.+ .+.+.++..+.++-++=--|.-. ....-+.++||||+.+.
T Consensus 2 ~~ilvlNGPNLN~LG~Rep~iYG~~tl~~i~~~~~~~a~~~g~~v~~~QSN~EGelId~I~~a~~~~dgiiINpga~TH 80 (146)
T PRK05395 2 MKILVLNGPNLNLLGTREPEIYGSTTLADIEALLEEEAAELGVELEFFQSNHEGELIDRIHEARDGADGIIINPGAYTH 80 (146)
T ss_pred CEEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhcccCCcEEEECchHHHH
Confidence 3689999864321 1 1222 34455666677777766655421 11123678999999885
No 147
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=47.29 E-value=23 Score=25.04 Aligned_cols=39 Identities=31% Similarity=0.437 Sum_probs=24.2
Q ss_pred HHHHHhhCCCcEEEECCCCCcc-------eEEECCEEEEcCCCCCC
Q 031964 60 LAMLQRQLDVDILVTGHTHQFT-------AYKHEGGVVINPGSATG 98 (150)
Q Consensus 60 l~~~~~~~~~div~~GHtH~~~-------~~~~~~~~~iNpGS~~~ 98 (150)
+.+.+.+.+.++-++=--|.-. ....-+.++||||..+.
T Consensus 33 l~~~a~~~g~~v~~~QSN~Egelid~I~~a~~~~dgiIINpga~TH 78 (140)
T cd00466 33 LRELAAELGVEVEFFQSNHEGELIDWIHEARDGADGIIINPGAYTH 78 (140)
T ss_pred HHHHHHHcCCEEEEEeeCcHHHHHHHHHHhhccCcEEEEcchHHHH
Confidence 4455566677777665555421 11223678999999874
No 148
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=46.39 E-value=27 Score=21.50 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=19.2
Q ss_pred HHHHHHHhhCCCcEEEECCCCCcce
Q 031964 58 DSLAMLQRQLDVDILVTGHTHQFTA 82 (150)
Q Consensus 58 ~~l~~~~~~~~~div~~GHtH~~~~ 82 (150)
..+.+.+++.++|+++.||+-.-..
T Consensus 38 ~~~~~~a~~~~~~~Iv~G~~~~d~~ 62 (86)
T cd01984 38 RILKRLAAEEGADVIILGHNADDVA 62 (86)
T ss_pred HHHHHHHHHcCCCEEEEcCCchhhh
Confidence 3466777888999999999865443
No 149
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=44.93 E-value=14 Score=26.08 Aligned_cols=58 Identities=22% Similarity=0.321 Sum_probs=33.0
Q ss_pred EEEEEecCcccccCC----------CH----HHHHHHHhhCCCcEEEECCCCCcce-------EEECCEEEEcCCCCCC
Q 031964 41 FKLGLCHGHQVIPWG----------DL----DSLAMLQRQLDVDILVTGHTHQFTA-------YKHEGGVVINPGSATG 98 (150)
Q Consensus 41 ~~i~~~HG~~~~~~~----------~~----~~l~~~~~~~~~div~~GHtH~~~~-------~~~~~~~~iNpGS~~~ 98 (150)
.+|++.||.-.+--+ +. +.+.+.+.+.+.++-++=--|.-.. ...-+.++||||+.+.
T Consensus 1 m~IlvinGPNLn~LG~Rep~iYG~~tl~~i~~~~~~~a~~~g~~v~~~QSN~EGelid~I~~a~~~~dgiIINpga~th 79 (140)
T PF01220_consen 1 MKILVINGPNLNLLGKREPEIYGTTTLEDIEQKCKETAAELGVEVEFFQSNHEGELIDWIHEARDDVDGIIINPGAYTH 79 (140)
T ss_dssp EEEEEEE-TTGGGTTTSSHHHHTSSHHHHHHHHHHHHHHHTTEEEEEEE-SSHHHHHHHHHHHTCTTSEEEEE-GGGGH
T ss_pred CEEEEEcCCCcccccCCCCCcCCcCCHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHhhCCEEEEccchhcc
Confidence 379999986542111 11 2345566677777777766664311 1114788999999875
No 150
>PLN00416 carbonate dehydratase
Probab=44.42 E-value=59 Score=25.35 Aligned_cols=63 Identities=17% Similarity=0.130 Sum_probs=31.5
Q ss_pred EEEEeCCCCCCCCCCCeeEEEECCEEEEEec--CcccccCC------CHHHHHHHHhhCC-CcEEEECCCCCcc
Q 031964 17 LHIIRGEYDEETRYPETKTLTIGQFKLGLCH--GHQVIPWG------DLDSLAMLQRQLD-VDILVTGHTHQFT 81 (150)
Q Consensus 17 ~~~V~GN~D~~~~lp~~~~~~~~~~~i~~~H--G~~~~~~~------~~~~l~~~~~~~~-~div~~GHtH~~~ 81 (150)
..+|-|=.| +..|...++..+-..++++- |....+.. ....++......+ ..|||||||+.-.
T Consensus 81 ~alvI~CsD--SRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGa 152 (258)
T PLN00416 81 KFLVFACSD--SRVCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGVGAAVEYAVVHLKVENILVIGHSCCGG 152 (258)
T ss_pred CEEEEEecC--CCCCHHHHcCCCCCCEEEEeccccccCCccccccccchhHHHHHHHHhCCCEEEEecCCCchH
Confidence 444445444 35555555555555566655 22222211 1122333223334 3699999998654
No 151
>PLN02154 carbonic anhydrase
Probab=44.06 E-value=65 Score=25.67 Aligned_cols=64 Identities=19% Similarity=0.136 Sum_probs=35.8
Q ss_pred CCEEEEeCCCCCCCCCCCeeEEEECCEEEEEecC--cccccC-----CCHHHHHHHHhhCC-CcEEEECCCCCc
Q 031964 15 PDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHG--HQVIPW-----GDLDSLAMLQRQLD-VDILVTGHTHQF 80 (150)
Q Consensus 15 ~~~~~V~GN~D~~~~lp~~~~~~~~~~~i~~~HG--~~~~~~-----~~~~~l~~~~~~~~-~div~~GHtH~~ 80 (150)
.|..++-|=.|- ..|...++..+-..++++.- ....+. +....++......+ ..|||+||++.-
T Consensus 106 ~P~~lvi~C~DS--RV~pe~if~~~pGdlFvvRN~GNiv~~~~~g~~~~~aslEyAv~~L~v~~IvV~GHs~CG 177 (290)
T PLN02154 106 SPKVMVIGCADS--RVCPSYVLGFQPGEAFTIRNVANLVTPVQNGPTETNSALEFAVTTLQVENIIVMGHSNCG 177 (290)
T ss_pred CCCEEEEEecCC--CCCHHHHcCCCCCCEEEEeccCCccCCccCCccchhhHHHHHHHHhCCCEEEEecCCCch
Confidence 446666676664 66666677666666777662 221111 11122333333334 359999999864
No 152
>PRK15005 universal stress protein F; Provisional
Probab=43.39 E-value=50 Score=22.14 Aligned_cols=31 Identities=16% Similarity=0.419 Sum_probs=21.7
Q ss_pred EEEEecCcccccCCCHHHHHHHHhhCCCcEEEECCCCC
Q 031964 42 KLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQ 79 (150)
Q Consensus 42 ~i~~~HG~~~~~~~~~~~l~~~~~~~~~div~~GHtH~ 79 (150)
+..+.+|.+ .+.+.+.+.+.++|+|+.|. |.
T Consensus 87 ~~~v~~G~p------~~~I~~~a~~~~~DLIV~Gs-~~ 117 (144)
T PRK15005 87 HVHVEEGSP------KDRILELAKKIPADMIIIAS-HR 117 (144)
T ss_pred EEEEeCCCH------HHHHHHHHHHcCCCEEEEeC-CC
Confidence 555666653 24566777888999999994 44
No 153
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=39.88 E-value=39 Score=26.35 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=24.1
Q ss_pred ECCEEEEEecCcccccCCCHHHHHHHHhhCCCcEEEEC
Q 031964 38 IGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTG 75 (150)
Q Consensus 38 ~~~~~i~~~HG~~~~~~~~~~~l~~~~~~~~~div~~G 75 (150)
..+.+|..+|..-+.+... +++.+.+...++|+++.|
T Consensus 132 ~p~l~ivg~h~GYf~~~e~-~~i~~~I~~s~pdil~Vg 168 (253)
T COG1922 132 YPGLKIVGSHDGYFDPEEE-EAIVERIAASGPDILLVG 168 (253)
T ss_pred CCCceEEEecCCCCChhhH-HHHHHHHHhcCCCEEEEe
Confidence 3456788888433333322 456666778899999888
No 154
>KOG1625 consensus DNA polymerase alpha-primase complex, polymerase-associated subunit B [Replication, recombination and repair]
Probab=39.48 E-value=30 Score=30.07 Aligned_cols=45 Identities=27% Similarity=0.302 Sum_probs=34.2
Q ss_pred CCCcEEEECCCCCcceEEECCEEEEcCCCCCCCCCCCCCCCCCcEEEEEEe
Q 031964 67 LDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDID 117 (150)
Q Consensus 67 ~~~div~~GHtH~~~~~~~~~~~~iNpGS~~~~~~~~~~~~~~s~~il~~~ 117 (150)
.-+||++.=--=+++++.+++.++||||-+.. +....+||-+.+.
T Consensus 534 ~~PdIlIlPSdLr~Fvk~V~~~V~iNpGr~aK------g~~~Gtfa~lti~ 578 (600)
T KOG1625|consen 534 STPDILILPSDLRHFVKDVNGCVVINPGRLAK------GTNGGTFAKLTIR 578 (600)
T ss_pred CCCcEEEechhhHHHHHhcCCeEEEcchhhcc------CcCCceeEEEEEe
Confidence 35777776655566777789999999999875 2346799998886
No 155
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=38.48 E-value=16 Score=19.85 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=18.2
Q ss_pred CCcEEEECCCCCcceEEECCEEEEcCC
Q 031964 68 DVDILVTGHTHQFTAYKHEGGVVINPG 94 (150)
Q Consensus 68 ~~div~~GHtH~~~~~~~~~~~~iNpG 94 (150)
+.|..+||.||.+.....+...+.+--
T Consensus 8 ~~~~~~C~GtHv~~t~~I~~i~i~~~~ 34 (44)
T smart00863 8 DFDVELCGGTHVPNTGEIGAFKILSVS 34 (44)
T ss_pred CEEEECCCCcccCChhhCcEEEEEEEe
Confidence 457788888888766666655555443
No 156
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=37.22 E-value=1.6e+02 Score=23.26 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=44.8
Q ss_pred CCcHHHHHHHHhhCCCEEEEeCCCCCCCCCCCeeEEEECCEEEEEecCcccccC-------------CC-----HHHHHH
Q 031964 1 MTFQEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPW-------------GD-----LDSLAM 62 (150)
Q Consensus 1 ~~~~ev~~~l~~~~~~~~~V~GN~D~~~~lp~~~~~~~~~~~i~~~HG~~~~~~-------------~~-----~~~l~~ 62 (150)
|-++.+++.|++.+ +..|. +.| ..++|+ ++.=|+=.||-+.... .. .....+
T Consensus 41 VHN~~Vv~~L~~~G--v~~v~-~~~-~~~v~~------~~~ViirAHGv~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~ 110 (281)
T PRK12360 41 IHNNQVVSDLEEKG--VKTIE-ESE-IDSLKE------GDVVIIRSHGVSKKVYKDLKDKGLEIIDATCPFVKKIQNIVE 110 (281)
T ss_pred cCCHHHHHHHHHCc--CEEEC-cCc-hhhCCC------CCEEEEeCCCCCHHHHHHHHHCCCeEEeCCCccchHHHHHHH
Confidence 45788999999887 45564 322 234553 2344666788754211 00 112233
Q ss_pred HHhhCCCcEEEECCCCCcceEEE
Q 031964 63 LQRQLDVDILVTGHTHQFTAYKH 85 (150)
Q Consensus 63 ~~~~~~~div~~GHtH~~~~~~~ 85 (150)
...+.++.++++|+-..|.+.-.
T Consensus 111 ~~~~~Gy~iviiG~~~HpEv~gi 133 (281)
T PRK12360 111 EYYNKGYSIIIVGDKNHPEVIGI 133 (281)
T ss_pred HHHhCCCEEEEEcCCCCceeeEe
Confidence 34456899999999998876543
No 157
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=37.19 E-value=1e+02 Score=23.39 Aligned_cols=46 Identities=13% Similarity=0.060 Sum_probs=33.2
Q ss_pred CcHHHHHHHHhhCCCEEEEeCCCCCC---------------C---------C---CCCeeEEEECCEEEEEec
Q 031964 2 TFQEVHDYLKIICPDLHIIRGEYDEE---------------T---------R---YPETKTLTIGQFKLGLCH 47 (150)
Q Consensus 2 ~~~ev~~~l~~~~~~~~~V~GN~D~~---------------~---------~---lp~~~~~~~~~~~i~~~H 47 (150)
..+++++.|+.++.++..+.-||-.+ . . -....+++++|.+|.++=
T Consensus 63 ~~~~~~~~L~~~G~d~vslANNH~~D~G~~gl~~Tl~~L~~~gi~~~Gag~~~~~a~~p~i~~~~g~kia~l~ 135 (250)
T PF09587_consen 63 APPEILDALKDAGFDVVSLANNHIFDYGEEGLLDTLEALDKAGIPYVGAGRNLEEARRPAIIEVNGVKIAFLG 135 (250)
T ss_pred CCHHHHHHHHHcCCCEEEecCCCCccccHHHHHHHHHHHHHCCCcEeECcCChHHhcCeEEEEECCEEEEEEE
Confidence 35788999999988788888898655 0 1 112368888999977654
No 158
>PRK15456 universal stress protein UspG; Provisional
Probab=37.05 E-value=78 Score=21.32 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=22.4
Q ss_pred EEEEecCcccccCCCHHHHHHHHhhCCCcEEEECCCCC
Q 031964 42 KLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQ 79 (150)
Q Consensus 42 ~i~~~HG~~~~~~~~~~~l~~~~~~~~~div~~GHtH~ 79 (150)
+..+..|++ .+.+.+.+++.++|+|+.|....
T Consensus 85 ~~~v~~G~~------~~~I~~~a~~~~~DLIVmG~~g~ 116 (142)
T PRK15456 85 KQHVRFGSV------RDEVNELAEELGADVVVIGSRNP 116 (142)
T ss_pred EEEEcCCCh------HHHHHHHHhhcCCCEEEEcCCCC
Confidence 445555543 24466777889999999999763
No 159
>PLN03014 carbonic anhydrase
Probab=36.95 E-value=83 Score=25.72 Aligned_cols=63 Identities=17% Similarity=0.132 Sum_probs=32.7
Q ss_pred CEEEEeCCCCCCCCCCCeeEEEECCEEEEEecC--cccccCC------CHHHHHHHHhhCCC-cEEEECCCCCc
Q 031964 16 DLHIIRGEYDEETRYPETKTLTIGQFKLGLCHG--HQVIPWG------DLDSLAMLQRQLDV-DILVTGHTHQF 80 (150)
Q Consensus 16 ~~~~V~GN~D~~~~lp~~~~~~~~~~~i~~~HG--~~~~~~~------~~~~l~~~~~~~~~-div~~GHtH~~ 80 (150)
|.+.|-|=.|- .+|...++..+-..++++-- ....+.. ....++......++ .|||+||++.-
T Consensus 160 P~alvI~CsDS--RV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~IVV~GHs~CG 231 (347)
T PLN03014 160 PKYMVFACSDS--RVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSACG 231 (347)
T ss_pred CCEEEEEeccC--CCCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHHHHHHHhCCCEEEEeCCCCch
Confidence 45555555553 55555555665556666652 2211211 11233333333343 59999999875
No 160
>PRK03011 butyrate kinase; Provisional
Probab=36.37 E-value=21 Score=29.16 Aligned_cols=12 Identities=50% Similarity=0.692 Sum_probs=9.8
Q ss_pred CEEEEcCCCCCC
Q 031964 87 GGVVINPGSATG 98 (150)
Q Consensus 87 ~~~~iNpGS~~~ 98 (150)
.+++|||||.+-
T Consensus 3 ~il~inpgstst 14 (358)
T PRK03011 3 RILVINPGSTST 14 (358)
T ss_pred EEEEEcCCCchh
Confidence 368899999884
No 161
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=36.35 E-value=2.1e+02 Score=22.88 Aligned_cols=73 Identities=12% Similarity=0.092 Sum_probs=44.2
Q ss_pred CCcHHHHHHHHhhCCCEEEEeCCCCCCCCCCCeeEEEECCEEEEEecCcccccC-------------CC-----HHHHHH
Q 031964 1 MTFQEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPW-------------GD-----LDSLAM 62 (150)
Q Consensus 1 ~~~~ev~~~l~~~~~~~~~V~GN~D~~~~lp~~~~~~~~~~~i~~~HG~~~~~~-------------~~-----~~~l~~ 62 (150)
|.++.+++.|++++ +..|. | ..++|+ ++.=|+=.||-+.... .. ...+.+
T Consensus 40 IHN~~vv~~L~~~G--V~~v~---~-~~~v~~------~~~ViirAHGv~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~ 107 (298)
T PRK01045 40 VHNRYVVERLEKKG--AIFVE---E-LDEVPD------GAIVIFSAHGVSPAVREEAKERGLTVIDATCPLVTKVHKEVA 107 (298)
T ss_pred ccCHHHHHHHHHCC--CEEec---C-cccCCC------CCEEEEeCCCCCHHHHHHHHHCCCeEEeCCCccchHHHHHHH
Confidence 45788999999988 44553 2 234553 3444666788653211 00 112233
Q ss_pred HHhhCCCcEEEECCCCCcceEEE
Q 031964 63 LQRQLDVDILVTGHTHQFTAYKH 85 (150)
Q Consensus 63 ~~~~~~~div~~GHtH~~~~~~~ 85 (150)
...+.++.++++|....|.+.-.
T Consensus 108 ~~~~~Gy~vvi~G~~~HpEv~gi 130 (298)
T PRK01045 108 RMSREGYEIILIGHKGHPEVEGT 130 (298)
T ss_pred HHHhCCCEEEEEeCCCCCeeeee
Confidence 33456899999999999976543
No 162
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=35.19 E-value=1.2e+02 Score=22.02 Aligned_cols=75 Identities=21% Similarity=0.104 Sum_probs=41.2
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCCCCCeeEEEECCEEEEEec--CcccccCC--CHHHHHHHHhhCC-CcEEEECCCCC
Q 031964 5 EVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCH--GHQVIPWG--DLDSLAMLQRQLD-VDILVTGHTHQ 79 (150)
Q Consensus 5 ev~~~l~~~~~~~~~V~GN~D~~~~lp~~~~~~~~~~~i~~~H--G~~~~~~~--~~~~l~~~~~~~~-~div~~GHtH~ 79 (150)
+.++.+.+-..|..++-|=.|. .+|...++..+-..++++- |....+.. ....++......+ ..++++|||.-
T Consensus 14 ~~~~~l~~gQ~P~~~vi~CsDS--Rv~pe~if~~~~GdlFViRnaGN~v~~~~~~~~asleyAv~~L~v~~IvV~GHs~C 91 (182)
T cd00883 14 DFFPRLAKGQTPEYLWIGCSDS--RVPENTILGLLPGEVFVHRNIANLVSPTDLNCLSVLQYAVDVLKVKHIIVCGHYGC 91 (182)
T ss_pred HHHHHhhcCCCCCEEEEEecCC--CCCHHHhcCCCCCCEEEEEeeccccCCCCcchhhhHHHHHHhcCCCEEEEecCCCc
Confidence 3344444433567888888885 6666666666555666665 22221211 1122322223334 46999999997
Q ss_pred cc
Q 031964 80 FT 81 (150)
Q Consensus 80 ~~ 81 (150)
-.
T Consensus 92 Ga 93 (182)
T cd00883 92 GG 93 (182)
T ss_pred hH
Confidence 54
No 163
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=34.69 E-value=51 Score=23.39 Aligned_cols=57 Identities=26% Similarity=0.329 Sum_probs=31.1
Q ss_pred EEEEecCccccc----------CCCHH----HHHHHHhhCCCcEEEECCCCCcc-------eEEECCEEEEcCCCCCC
Q 031964 42 KLGLCHGHQVIP----------WGDLD----SLAMLQRQLDVDILVTGHTHQFT-------AYKHEGGVVINPGSATG 98 (150)
Q Consensus 42 ~i~~~HG~~~~~----------~~~~~----~l~~~~~~~~~div~~GHtH~~~-------~~~~~~~~~iNpGS~~~ 98 (150)
+|++.+|.-.+- ..+.+ .+++.+.+.+..+.+.=-.|.-. .....+.++||||..+.
T Consensus 2 ~ilvlnGPNLN~LG~REp~iYG~~Tl~di~~~~~~~a~~~g~~v~~~QSN~Eg~Lid~Ihea~~~~~~IvINpga~TH 79 (146)
T COG0757 2 KILVLNGPNLNLLGKREPGIYGSTTLEDIEADLEEEAAKLGVEVEFRQSNHEGELIDWIHEARGKAGDIVINPGAYTH 79 (146)
T ss_pred eEEEEeCCCccccCCCCCCccCcccHHHHHHHHHHHHHHcCceEEEEecCchHHHHHHHHHhhccCCeEEEcCccchh
Confidence 688888764321 11222 34455566677776655444321 11111228999999886
No 164
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=33.37 E-value=1.3e+02 Score=23.99 Aligned_cols=43 Identities=9% Similarity=0.030 Sum_probs=28.2
Q ss_pred CcEEEECCC-CCcceE----EECCEEEEcCC-CCCCCCCCCCCCCCCcEEEEEEeCCe
Q 031964 69 VDILVTGHT-HQFTAY----KHEGGVVINPG-SATGAFSSITYDVNPSFVLMDIDGLR 120 (150)
Q Consensus 69 ~div~~GHt-H~~~~~----~~~~~~~iNpG-S~~~~~~~~~~~~~~s~~il~~~~~~ 120 (150)
+|+++-|-+ ..++.. ..++.+++||| |.... .+|.+.....++
T Consensus 235 Pd~ivL~D~s~~~~~~~~~~~~~~~~~~Np~gsF~~~---------~sF~~Y~~~~~~ 283 (291)
T PTZ00235 235 PHFICVCDNSCNSFISYASEDTSDCIISNSDMSFTRK---------KTFTVYSALHHE 283 (291)
T ss_pred CCEEEEecCCCCccceeecccCCceEEECCCCccCCC---------ceEEEEehhcce
Confidence 567888888 455443 23489999995 86641 278877765554
No 165
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=32.41 E-value=42 Score=24.10 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=12.2
Q ss_pred HHHHHHhhCCCcEEEECCCC
Q 031964 59 SLAMLQRQLDVDILVTGHTH 78 (150)
Q Consensus 59 ~l~~~~~~~~~div~~GHtH 78 (150)
.|.+.+.+.+++.|+.||+=
T Consensus 87 ~l~~~a~~~g~~~i~~GHh~ 106 (182)
T PF01171_consen 87 FLREIAKEEGCNKIALGHHL 106 (182)
T ss_dssp HHHHHHHTTT-CEEE---BH
T ss_pred HHHHhhhcccccceeecCcC
Confidence 35567778899999999973
No 166
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=32.18 E-value=28 Score=28.78 Aligned_cols=23 Identities=48% Similarity=0.738 Sum_probs=18.1
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCcEEEEEEeCCeE
Q 031964 88 GVVINPGSATGAFSSITYDVNPSFVLMDIDGLRV 121 (150)
Q Consensus 88 ~~~iNpGS~~~~~~~~~~~~~~s~~il~~~~~~i 121 (150)
+++|||||.+. -|++++.+....
T Consensus 2 ILVIN~GSSS~-----------Kfalf~~~~~~~ 24 (388)
T PF00871_consen 2 ILVINPGSSST-----------KFALFDMDSGEV 24 (388)
T ss_dssp EEEEEEESSEE-----------EEEEEETTTTEE
T ss_pred EEEEcCChHhh-----------eeeeEECCCCCe
Confidence 68899999885 588888876553
No 167
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=31.73 E-value=57 Score=23.16 Aligned_cols=73 Identities=12% Similarity=0.086 Sum_probs=39.7
Q ss_pred HHHHHHHHhhCCC-EEEEeCCCCCCCCCCCeeEEEECCEEEEEecCcccccC---CCHHHHHHHHhhCCCcEEEECCCCC
Q 031964 4 QEVHDYLKIICPD-LHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPW---GDLDSLAMLQRQLDVDILVTGHTHQ 79 (150)
Q Consensus 4 ~ev~~~l~~~~~~-~~~V~GN~D~~~~lp~~~~~~~~~~~i~~~HG~~~~~~---~~~~~l~~~~~~~~~div~~GHtH~ 79 (150)
.|.+..-++++.+ ...+.|+.+.. .. ......+--+++++-...+... .....+.+++++.++++|++|||-.
T Consensus 18 ~el~~~A~~l~~~v~~v~~G~~~~~-~~--~~~~~~Gad~v~~~~~~~~~~~~~~~~a~al~~~i~~~~p~~Vl~~~t~~ 94 (168)
T cd01715 18 LEAVTAARKLGGEVTALVIGSGAEA-VA--AALKAYGADKVLVAEDPALAHYLAEPYAPALVALAKKEKPSHILAGATSF 94 (168)
T ss_pred HHHHHHHHHhCCCEEEEEECCChHH-HH--HHHHhcCCCEEEEecChhhcccChHHHHHHHHHHHHhcCCCEEEECCCcc
Confidence 4566666666533 34567776542 11 1112344445665543332111 1123456666777899999999975
No 168
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=31.39 E-value=63 Score=20.78 Aligned_cols=23 Identities=9% Similarity=0.198 Sum_probs=17.9
Q ss_pred HHHHHHhhCCCcEEEECCCCCcc
Q 031964 59 SLAMLQRQLDVDILVTGHTHQFT 81 (150)
Q Consensus 59 ~l~~~~~~~~~div~~GHtH~~~ 81 (150)
.+.+.+.+.+++.++.||+.-..
T Consensus 52 ~~~~~a~~~g~~~i~~g~~~~D~ 74 (103)
T cd01986 52 AAKRIAKEKGAETIATGTRRDDV 74 (103)
T ss_pred HHHHHHHHcCCCEEEEcCCcchH
Confidence 34556777899999999998654
No 169
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=30.97 E-value=25 Score=27.05 Aligned_cols=32 Identities=25% Similarity=0.188 Sum_probs=23.4
Q ss_pred hCCCcEEEECCCCCcceEEE------CCEEEEcCCCCC
Q 031964 66 QLDVDILVTGHTHQFTAYKH------EGGVVINPGSAT 97 (150)
Q Consensus 66 ~~~~div~~GHtH~~~~~~~------~~~~~iNpGS~~ 97 (150)
+.++|.++.|-||.|..... ....+|.|+..-
T Consensus 170 ~~~~d~lILGCTh~P~l~~~i~~~~~~~v~~IDp~~~l 207 (251)
T TIGR00067 170 DTLPDTVVLGCTHFPLLKEEIEQYLPEHVRLVDSGVHT 207 (251)
T ss_pred cCCCCEEEECcCChHHHHHHHHHHcCCCcEEECCHHHH
Confidence 45899999999999975421 245688887643
No 170
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=30.91 E-value=1.4e+02 Score=22.01 Aligned_cols=65 Identities=17% Similarity=0.125 Sum_probs=36.1
Q ss_pred CCEEEEeCCCCCCCCCCCeeEEEECCEEEEEec--CcccccCC-------CHHHHHHHHhhCC-CcEEEECCCCCcc
Q 031964 15 PDLHIIRGEYDEETRYPETKTLTIGQFKLGLCH--GHQVIPWG-------DLDSLAMLQRQLD-VDILVTGHTHQFT 81 (150)
Q Consensus 15 ~~~~~V~GN~D~~~~lp~~~~~~~~~~~i~~~H--G~~~~~~~-------~~~~l~~~~~~~~-~div~~GHtH~~~ 81 (150)
.|...+-|=.|. .+|...++..+-..++++- |....+.. ....++......+ ..++++|||..-.
T Consensus 25 ~P~~~~i~C~Ds--Rv~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleyav~~l~v~~ivV~GH~~Cga 99 (190)
T cd00884 25 SPKALFIACSDS--RVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYAVAVLKVEHIVVCGHSDCGG 99 (190)
T ss_pred CCCeEEEeeeCC--CCCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhHHHHHHHhCCCEEEEeCCCcchH
Confidence 457778887885 6666666666555666655 22222210 1122332223334 4699999998643
No 171
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=30.90 E-value=57 Score=23.14 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=17.1
Q ss_pred HHHHHHhhCCCcEEEECCCCCc
Q 031964 59 SLAMLQRQLDVDILVTGHTHQF 80 (150)
Q Consensus 59 ~l~~~~~~~~~div~~GHtH~~ 80 (150)
.+.+.+.+.+++.++.||+-.-
T Consensus 87 ~l~~~a~~~~~~~i~~Gh~~dD 108 (185)
T cd01992 87 FFAEIAKEHGADVLLTAHHADD 108 (185)
T ss_pred HHHHHHHHcCCCEEEEcCCcHH
Confidence 3556677889999999998643
No 172
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=30.80 E-value=96 Score=20.84 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=17.0
Q ss_pred HHHHHHHhhCCCcEEEECCCC
Q 031964 58 DSLAMLQRQLDVDILVTGHTH 78 (150)
Q Consensus 58 ~~l~~~~~~~~~div~~GHtH 78 (150)
+.+.+.+.+.++|+|+.|+.+
T Consensus 93 ~~I~~~a~~~~~DLIV~Gs~~ 113 (144)
T PRK15118 93 QVLVDAIKKYDMDLVVCGHHQ 113 (144)
T ss_pred HHHHHHHHHhCCCEEEEeCcc
Confidence 456677888899999999874
No 173
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=30.75 E-value=18 Score=28.39 Aligned_cols=30 Identities=30% Similarity=0.288 Sum_probs=23.2
Q ss_pred hCCCcEEEECCCCCcceEE------ECCEEEEcCCC
Q 031964 66 QLDVDILVTGHTHQFTAYK------HEGGVVINPGS 95 (150)
Q Consensus 66 ~~~~div~~GHtH~~~~~~------~~~~~~iNpGS 95 (150)
..++|.++.|.||.|.... -..+.+|.||.
T Consensus 175 ~~~~DtlVLGCTHyPll~~~i~~~~~~~v~lids~~ 210 (269)
T COG0796 175 EAGPDTLVLGCTHYPLLKPEIQQVLGEHVALIDSGA 210 (269)
T ss_pred ccCCCEEEEeCcCcHHHHHHHHHHhCCCceEeCCHH
Confidence 3469999999999997543 13588898884
No 174
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=30.59 E-value=68 Score=20.85 Aligned_cols=25 Identities=8% Similarity=0.238 Sum_probs=19.9
Q ss_pred HHHHHHHhhCCCcEEEECCCCCcce
Q 031964 58 DSLAMLQRQLDVDILVTGHTHQFTA 82 (150)
Q Consensus 58 ~~l~~~~~~~~~div~~GHtH~~~~ 82 (150)
+.+.+.+.+.++|+|+.|+......
T Consensus 84 ~~I~~~a~~~~~dlIV~G~~~~~~~ 108 (132)
T cd01988 84 SGILRTAKERQADLIIMGWHGSTSL 108 (132)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCCc
Confidence 4566777888999999999986643
No 175
>PF14360 PAP2_C: PAP2 superfamily C-terminal
Probab=30.42 E-value=20 Score=22.20 Aligned_cols=10 Identities=40% Similarity=0.763 Sum_probs=7.8
Q ss_pred CcEEEECCCC
Q 031964 69 VDILVTGHTH 78 (150)
Q Consensus 69 ~div~~GHtH 78 (150)
-|++++|||=
T Consensus 3 gDliFSGHt~ 12 (74)
T PF14360_consen 3 GDLIFSGHTA 12 (74)
T ss_pred CCEEEchhHH
Confidence 3889999973
No 176
>PLN03006 carbonate dehydratase
Probab=29.60 E-value=1.4e+02 Score=24.00 Aligned_cols=64 Identities=20% Similarity=0.180 Sum_probs=32.8
Q ss_pred CEEEEeCCCCCCCCCCCeeEEEECCEEEEEec--CcccccCC-----CHHHHHHHHhhCCC-cEEEECCCCCcc
Q 031964 16 DLHIIRGEYDEETRYPETKTLTIGQFKLGLCH--GHQVIPWG-----DLDSLAMLQRQLDV-DILVTGHTHQFT 81 (150)
Q Consensus 16 ~~~~V~GN~D~~~~lp~~~~~~~~~~~i~~~H--G~~~~~~~-----~~~~l~~~~~~~~~-div~~GHtH~~~ 81 (150)
|.+.|-|=.|- .+|...++..+-..++++= |....|.. ....++......++ .|||+||++--.
T Consensus 113 P~~lvI~CsDS--RV~Pe~Ifd~~pGDlFVVRNaGNiVpp~d~~~~~~~aSLEYAV~~L~V~~IVV~GHs~CGa 184 (301)
T PLN03006 113 PKFLVIACADS--RVCPSAVLGFQPGDAFTVRNIANLVPPYESGPTETKAALEFSVNTLNVENILVIGHSRCGG 184 (301)
T ss_pred CCEEEEEeccC--CCCHHHHhCCCCCCEEEEeccccccCCccccccchhhhHHHHHHHhCCCEEEEecCCCchH
Confidence 45555555553 5555666655555555544 22211221 12233333334444 599999998643
No 177
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=29.42 E-value=25 Score=19.37 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=12.8
Q ss_pred CCcEEEECCCCCcceEEECCEEEE
Q 031964 68 DVDILVTGHTHQFTAYKHEGGVVI 91 (150)
Q Consensus 68 ~~div~~GHtH~~~~~~~~~~~~i 91 (150)
+.|+-+||-||.+.....+...++
T Consensus 8 ~~~~~~C~GtHv~~T~~i~~~~i~ 31 (44)
T PF07973_consen 8 DFDVDLCGGTHVPNTGEIGHFKIL 31 (44)
T ss_dssp TTEEEEESS---SBGGGG-CEEEE
T ss_pred CeeEECCCCcccCChhEECcEEEE
Confidence 468889999998865444444443
No 178
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=28.97 E-value=1.4e+02 Score=25.46 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=29.6
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCC------------------------------CCCCCeeEEEECCEEEEEec
Q 031964 4 QEVHDYLKIICPDLHIIRGEYDEE------------------------------TRYPETKTLTIGQFKLGLCH 47 (150)
Q Consensus 4 ~ev~~~l~~~~~~~~~V~GN~D~~------------------------------~~lp~~~~~~~~~~~i~~~H 47 (150)
...++.|..++-+ ...-|||+++ ..++...+++.++.||.++=
T Consensus 93 ~~~~~~mN~m~yD-a~tiGNHEFd~g~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~KIgiIG 165 (517)
T COG0737 93 EPTVDLLNALGYD-AMTLGNHEFDYGLEALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGGVKIGIIG 165 (517)
T ss_pred ChHHHHHhhcCCc-EEeecccccccCHHHHHHHHhccCCceEEeeeEecCCCCccCcCCeEEEecCCeEEEEEE
Confidence 3567778877743 5677899987 11235568889999877654
No 179
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=28.85 E-value=63 Score=23.14 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=17.1
Q ss_pred HHHHHHhhCCCcEEEECCCCC
Q 031964 59 SLAMLQRQLDVDILVTGHTHQ 79 (150)
Q Consensus 59 ~l~~~~~~~~~div~~GHtH~ 79 (150)
.+.+.+++.++++|++|||-.
T Consensus 82 ~l~~~i~~~~p~~Vl~g~t~~ 102 (181)
T cd01985 82 ALAALIKKEKPDLILAGATSI 102 (181)
T ss_pred HHHHHHHHhCCCEEEECCccc
Confidence 455666677899999999997
No 180
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=28.70 E-value=1.3e+02 Score=21.40 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=16.5
Q ss_pred CCCCCCcEEEEEEeCCeEEEEE
Q 031964 104 TYDVNPSFVLMDIDGLRVVVYV 125 (150)
Q Consensus 104 ~~~~~~s~~il~~~~~~i~v~~ 125 (150)
.+++..+|-++.+..+++...+
T Consensus 122 e~~~~~~Y~Vv~~~~~g~~~~y 143 (149)
T COG3019 122 EGDRKDSYDVVAVNGDGQSEVY 143 (149)
T ss_pred CCCCCCceEEEEEcCcccEEEe
Confidence 4567899999999887765433
No 181
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=28.41 E-value=55 Score=21.85 Aligned_cols=18 Identities=39% Similarity=0.660 Sum_probs=12.2
Q ss_pred HHHHHhhC-CCcEEEECCC
Q 031964 60 LAMLQRQL-DVDILVTGHT 77 (150)
Q Consensus 60 l~~~~~~~-~~div~~GHt 77 (150)
+.++..+. +.+++++||+
T Consensus 54 l~~~~~~~~~~~i~itGHS 72 (140)
T PF01764_consen 54 LKELVEKYPDYSIVITGHS 72 (140)
T ss_dssp HHHHHHHSTTSEEEEEEET
T ss_pred HHHHHhcccCccchhhccc
Confidence 44443333 5889999997
No 182
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=27.99 E-value=68 Score=22.95 Aligned_cols=21 Identities=14% Similarity=0.314 Sum_probs=16.7
Q ss_pred HHHHHHhhCCCcEEEECCCCC
Q 031964 59 SLAMLQRQLDVDILVTGHTHQ 79 (150)
Q Consensus 59 ~l~~~~~~~~~div~~GHtH~ 79 (150)
.+.+.+.+.++++|+.||+-.
T Consensus 90 ~l~~~a~~~g~~~i~~Gh~~~ 110 (189)
T TIGR02432 90 FFEEIAKKHGADYILTAHHAD 110 (189)
T ss_pred HHHHHHHHcCCCEEEEcCccH
Confidence 355677788999999999854
No 183
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=27.77 E-value=85 Score=20.39 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=19.8
Q ss_pred HHHHHHHhhCCCcEEEECCCCCcce
Q 031964 58 DSLAMLQRQLDVDILVTGHTHQFTA 82 (150)
Q Consensus 58 ~~l~~~~~~~~~div~~GHtH~~~~ 82 (150)
+.+.+.+++.++|+++.|+.+....
T Consensus 75 ~~I~~~~~~~~~dllviG~~~~~~~ 99 (124)
T cd01987 75 EAIVEFAREHNVTQIVVGKSRRSRW 99 (124)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCchH
Confidence 4577777889999999999877543
No 184
>PLN03019 carbonic anhydrase
Probab=27.70 E-value=1.4e+02 Score=24.20 Aligned_cols=21 Identities=14% Similarity=0.446 Sum_probs=14.4
Q ss_pred EEEEeeCCeEEEEEEEEeccC
Q 031964 124 YVYELIDGEVKVDKIDFKKTS 144 (150)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~ 144 (150)
-+|++.+|++++...+|....
T Consensus 306 ~~YDl~TG~V~~~~~~~~~~~ 326 (330)
T PLN03019 306 GYYDFVNGSFELWELQFGISP 326 (330)
T ss_pred EEEECCCceEEEEccccCcCC
Confidence 567777888877776665443
No 185
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=27.19 E-value=1.4e+02 Score=27.35 Aligned_cols=22 Identities=14% Similarity=-0.007 Sum_probs=17.8
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCC
Q 031964 5 EVHDYLKIICPDLHIIRGEYDEE 27 (150)
Q Consensus 5 ev~~~l~~~~~~~~~V~GN~D~~ 27 (150)
-+++.+..++-+ ....||||++
T Consensus 192 P~i~amN~LGyD-A~tLGNHEFD 213 (814)
T PRK11907 192 PMYAALEALGFD-AGTLGNHEFN 213 (814)
T ss_pred HHHHHHhccCCC-EEEechhhcc
Confidence 378889988843 6789999998
No 186
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=26.63 E-value=39 Score=28.92 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=16.1
Q ss_pred EEEEeeCCeEEEEEEEEeccCCC
Q 031964 124 YVYELIDGEVKVDKIDFKKTSTC 146 (150)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~ 146 (150)
+++.-.++.+.+..+..|..+.+
T Consensus 428 Ei~~n~dgt~si~tt~vd~~~~~ 450 (496)
T TIGR03767 428 ELADNQDGTVSIFTTLIESAAPY 450 (496)
T ss_pred EEEeCCCCcEEEEEEecccCCCc
Confidence 44444568888888888877654
No 187
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=26.59 E-value=81 Score=25.65 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=16.2
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCcEEEEEEeCC
Q 031964 88 GVVINPGSATGAFSSITYDVNPSFVLMDIDGL 119 (150)
Q Consensus 88 ~~~iNpGS~~~~~~~~~~~~~~s~~il~~~~~ 119 (150)
+++|||||.+. .+++++-+..
T Consensus 2 il~in~Gsts~-----------k~alf~~~~~ 22 (351)
T TIGR02707 2 ILVINPGSTST-----------KLAVFEDERP 22 (351)
T ss_pred EEEEecCchhh-----------eEEEEeCCCc
Confidence 68899999885 4788876654
No 188
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=25.92 E-value=62 Score=22.71 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=16.8
Q ss_pred HHHHHHhhCCCcEEEECCCCCc
Q 031964 59 SLAMLQRQLDVDILVTGHTHQF 80 (150)
Q Consensus 59 ~l~~~~~~~~~div~~GHtH~~ 80 (150)
.+.+.+++.++|+|++|+|-.-
T Consensus 81 ~l~~~~~~~~~~lVl~~~t~~g 102 (164)
T PF01012_consen 81 ALAELIKEEGPDLVLFGSTSFG 102 (164)
T ss_dssp HHHHHHHHHT-SEEEEESSHHH
T ss_pred HHHHHHHhcCCCEEEEcCcCCC
Confidence 4566777889999999999863
No 189
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=25.86 E-value=30 Score=26.65 Aligned_cols=37 Identities=8% Similarity=-0.024 Sum_probs=21.3
Q ss_pred CEEEEEecCcccccCCCHHHHHHHHhhCCCcEEEECCC
Q 031964 40 QFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHT 77 (150)
Q Consensus 40 ~~~i~~~HG~~~~~~~~~~~l~~~~~~~~~div~~GHt 77 (150)
+.+|.-+|...+.+. ..+.+.+.....++|+++.|=.
T Consensus 130 ~l~i~g~~~Gyf~~~-e~~~i~~~I~~s~~dil~VglG 166 (243)
T PRK03692 130 NVNIVGSQDGYFTPE-QRQALFERIHASGAKIVTVAMG 166 (243)
T ss_pred CCEEEEEeCCCCCHH-HHHHHHHHHHhcCCCEEEEECC
Confidence 666666663222221 2233555667788999888844
No 190
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=25.78 E-value=94 Score=20.44 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=12.7
Q ss_pred EEEecCcccccCCCHHHHHHHHhh
Q 031964 43 LGLCHGHQVIPWGDLDSLAMLQRQ 66 (150)
Q Consensus 43 i~~~HG~~~~~~~~~~~l~~~~~~ 66 (150)
+++.||+....+..-+.+.+.++.
T Consensus 4 llvgHGSr~~~~~~~~~l~~~l~~ 27 (103)
T cd03413 4 VFMGHGTDHPSNAVYAALEYVLRE 27 (103)
T ss_pred EEEECCCCchhhhHHHHHHHHHHh
Confidence 678899876432222334444433
No 191
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=25.07 E-value=34 Score=25.01 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=21.1
Q ss_pred ECCEEEEEecCcccccCCCHHHHHHHHhhCCCcEEEECC
Q 031964 38 IGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGH 76 (150)
Q Consensus 38 ~~~~~i~~~HG~~~~~~~~~~~l~~~~~~~~~div~~GH 76 (150)
..+.+|.-.||.. .+ ...+.+.+.....++|+++.|=
T Consensus 72 yP~l~i~g~~g~f-~~-~~~~~i~~~I~~s~~dil~Vgl 108 (177)
T TIGR00696 72 YPKLKIVGAFGPL-EP-EERKAALAKIARSGAGIVFVGL 108 (177)
T ss_pred CCCCEEEEECCCC-Ch-HHHHHHHHHHHHcCCCEEEEEc
Confidence 3456655555432 11 1223455666778999988873
No 192
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=25.05 E-value=78 Score=25.07 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=18.4
Q ss_pred CHHHHHHHHhhCCCcE-EEECCCCC
Q 031964 56 DLDSLAMLQRQLDVDI-LVTGHTHQ 79 (150)
Q Consensus 56 ~~~~l~~~~~~~~~di-v~~GHtH~ 79 (150)
-++.+..+..+.++|| |+.||-=.
T Consensus 141 qp~~i~~Ll~~~~PDIlViTGHD~~ 165 (283)
T TIGR02855 141 MPEKVLDLIEEVRPDILVITGHDAY 165 (283)
T ss_pred chHHHHHHHHHhCCCEEEEeCchhh
Confidence 3456778888899995 78999854
No 193
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=24.67 E-value=73 Score=26.67 Aligned_cols=13 Identities=23% Similarity=0.174 Sum_probs=10.6
Q ss_pred CCEEEEeCCCCCC
Q 031964 15 PDLHIIRGEYDEE 27 (150)
Q Consensus 15 ~~~~~V~GN~D~~ 27 (150)
.++..++||||-.
T Consensus 132 ~~~~~i~GNhDIG 144 (410)
T KOG3662|consen 132 IKVIYIAGNHDIG 144 (410)
T ss_pred CeeEEeCCccccc
Confidence 4589999999954
No 194
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=24.13 E-value=92 Score=25.91 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=16.8
Q ss_pred cHHHHHHHHhhC----CCEEEEeCCCCCC
Q 031964 3 FQEVHDYLKIIC----PDLHIIRGEYDEE 27 (150)
Q Consensus 3 ~~ev~~~l~~~~----~~~~~V~GN~D~~ 27 (150)
|-||+-+|=.++ ..++..||||+-.
T Consensus 131 SiECvlYLwsLKi~yp~tl~lLRGNHECr 159 (517)
T KOG0375|consen 131 SIECVLYLWSLKINYPKTLFLLRGNHECR 159 (517)
T ss_pred eeehHHHHHHHhcCCCCeEEEecCCcchh
Confidence 345666665554 2378899999964
No 195
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=24.07 E-value=47 Score=26.68 Aligned_cols=11 Identities=45% Similarity=0.682 Sum_probs=9.3
Q ss_pred EEEEcCCCCCC
Q 031964 88 GVVINPGSATG 98 (150)
Q Consensus 88 ~~~iNpGS~~~ 98 (150)
.+.|||||.+-
T Consensus 5 iltINPGstst 15 (358)
T COG3426 5 ILTINPGSTST 15 (358)
T ss_pred EEEecCCCccc
Confidence 67899999874
No 196
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=23.91 E-value=72 Score=24.62 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=17.0
Q ss_pred HHHHHHhhCCCcEEEECCCCC
Q 031964 59 SLAMLQRQLDVDILVTGHTHQ 79 (150)
Q Consensus 59 ~l~~~~~~~~~div~~GHtH~ 79 (150)
.+.+.+...+++.|+.||+=-
T Consensus 111 ~l~~~a~~~g~~~i~tgH~~d 131 (298)
T COG0037 111 LLYKIAKELGADKIATGHHLD 131 (298)
T ss_pred HHHHHHHHcCCCeEEeccCcH
Confidence 356677888999999999754
No 197
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=23.31 E-value=1.4e+02 Score=22.69 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=20.5
Q ss_pred EEEEEecCcccccCCCHHHHHHHHhhCCCcEEEECCC
Q 031964 41 FKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHT 77 (150)
Q Consensus 41 ~~i~~~HG~~~~~~~~~~~l~~~~~~~~~div~~GHt 77 (150)
.||.++-|+.. .+...+.+.++|++++|..
T Consensus 171 ~rVav~~GsG~-------~~i~~a~~~g~D~~ITGd~ 200 (241)
T PF01784_consen 171 KRVAVCGGSGG-------SFIEEAAEAGADVYITGDI 200 (241)
T ss_dssp EEEEEECSSSG-------GGHHHHHHTTSSEEEESS-
T ss_pred cEEEEEcccCc-------cHHHHHHhCCCeEEEEccC
Confidence 37889998764 1233455678999999987
No 198
>PRK10437 carbonic anhydrase; Provisional
Probab=22.83 E-value=2.4e+02 Score=21.42 Aligned_cols=65 Identities=18% Similarity=0.129 Sum_probs=34.2
Q ss_pred CCEEEEeCCCCCCCCCCCeeEEEECCEEEEEec--CcccccCC--CHHHHHHHHhhCC-CcEEEECCCCCcc
Q 031964 15 PDLHIIRGEYDEETRYPETKTLTIGQFKLGLCH--GHQVIPWG--DLDSLAMLQRQLD-VDILVTGHTHQFT 81 (150)
Q Consensus 15 ~~~~~V~GN~D~~~~lp~~~~~~~~~~~i~~~H--G~~~~~~~--~~~~l~~~~~~~~-~div~~GHtH~~~ 81 (150)
.|.+++-|=.|. .+|...++..+-..++++- |....+.. ....++......+ ..|+++|||..-.
T Consensus 34 ~p~~~~i~C~DS--Rv~p~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~leyAV~~L~v~~IvV~GHt~CG~ 103 (220)
T PRK10437 34 KPRFLWIGCSDS--RVPAERLTGLEPGELFVHRNVANLVIHTDLNCLSVVQYAVDVLEVEHIIICGHYGCGG 103 (220)
T ss_pred CCCEEEEEeccc--CCCHHHhcCCCCCcEEEEeecccccCCCCcchHHHHHHHHHHcCCCEEEEeCCCCchH
Confidence 345666676774 5666666666555566655 22221111 1122222222334 4699999998643
No 199
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=22.70 E-value=2.3e+02 Score=23.16 Aligned_cols=50 Identities=26% Similarity=0.362 Sum_probs=28.9
Q ss_pred HHHHHhhCCCcEEEECCCCCcceEEECCEEEEcCCCCCCCCCCCCCCCCCcEEEEEEeCC
Q 031964 60 LAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGL 119 (150)
Q Consensus 60 l~~~~~~~~~div~~GHtH~~~~~~~~~~~~iNpGS~~~~~~~~~~~~~~s~~il~~~~~ 119 (150)
+.+.+.+.+++.|+.||.=+ ....++...+.-|. |.....||.+-.+..+
T Consensus 105 l~~~A~~~G~~~IATGHya~--~~~~~~~~~l~~g~--------D~~kDQSyfL~~l~~~ 154 (360)
T PRK14665 105 LAKIADEMGIFYLATGHYVR--KQWIDGNYYITPAE--------DVDKDQSFFLWGLRQE 154 (360)
T ss_pred HHHHHHHcCCCEEEECCccc--eeccCCcEEEEeec--------CCCCCceEEecCCCHH
Confidence 45667788999999999822 22223333344332 2333467766655543
No 200
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=22.49 E-value=4.3e+02 Score=22.01 Aligned_cols=76 Identities=12% Similarity=0.063 Sum_probs=44.6
Q ss_pred CCcHHHHHHHHhhCCCEEEEeCCCC--CCCCCCCeeEEEECCEEEEEecCcccccC-------------CCH-----HHH
Q 031964 1 MTFQEVHDYLKIICPDLHIIRGEYD--EETRYPETKTLTIGQFKLGLCHGHQVIPW-------------GDL-----DSL 60 (150)
Q Consensus 1 ~~~~ev~~~l~~~~~~~~~V~GN~D--~~~~lp~~~~~~~~~~~i~~~HG~~~~~~-------------~~~-----~~l 60 (150)
|-++.+++.|++.+ +..|.+... ...++|. ++.=|+=.||-+.... ..+ ...
T Consensus 78 IHNp~Vv~~L~~~G--v~~v~~~~~~~~~~~v~~------~~~VIIrAHGv~~~v~~~~~~rgl~iiDATCP~V~kvh~~ 149 (387)
T PRK13371 78 IHNPSVNQHLREMG--VRFIPVEKGVKDFSVVTP------GDVVILPAFGATVQEMQLLNEKGCHIVDTTCPWVSKVWNT 149 (387)
T ss_pred cCCHHHHHHHHhCC--CEEEcCcCcccchhcCCC------CCEEEEeCCCCCHHHHHHHHHCCCeEEecCCccchHHHHH
Confidence 45789999999987 566664211 1123332 3444666787653211 000 122
Q ss_pred HHHHhhCCCcEEEECCCCCcceEE
Q 031964 61 AMLQRQLDVDILVTGHTHQFTAYK 84 (150)
Q Consensus 61 ~~~~~~~~~div~~GHtH~~~~~~ 84 (150)
.+...+.++.+|+.|+--.|.+.-
T Consensus 150 v~~~~~~Gy~iIIiG~~~HpEV~G 173 (387)
T PRK13371 150 VEKHKKKDFTSIIHGKYKHEETRA 173 (387)
T ss_pred HHHHHhCCCEEEEEcCCCCcceee
Confidence 333445689999999998886654
No 201
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=22.33 E-value=89 Score=21.99 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=16.8
Q ss_pred HHHHHHhhCCCcEEEECCCCC
Q 031964 59 SLAMLQRQLDVDILVTGHTHQ 79 (150)
Q Consensus 59 ~l~~~~~~~~~div~~GHtH~ 79 (150)
.+.+.+++.++++++.||+--
T Consensus 97 ~l~~~a~~~g~~~l~~Gh~~d 117 (185)
T cd01993 97 LLNKIAKELGADKLATGHNLD 117 (185)
T ss_pred HHHHHHHHcCCCEEEEcCChH
Confidence 355667788999999999864
No 202
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=21.81 E-value=1.2e+02 Score=25.36 Aligned_cols=26 Identities=12% Similarity=0.326 Sum_probs=21.8
Q ss_pred HHHHHHHHhhCCCcEEEECCCCCcce
Q 031964 57 LDSLAMLQRQLDVDILVTGHTHQFTA 82 (150)
Q Consensus 57 ~~~l~~~~~~~~~div~~GHtH~~~~ 82 (150)
-+.+++++.+.++.+|++|-+=.+..
T Consensus 155 yD~~~k~a~e~kPK~ii~G~SaY~r~ 180 (413)
T COG0112 155 YDEVEKLAKEVKPKLIIAGGSAYSRP 180 (413)
T ss_pred HHHHHHHHHHhCCCEEEECccccccc
Confidence 46788899999999999999877643
No 203
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=20.91 E-value=3.3e+02 Score=24.05 Aligned_cols=73 Identities=16% Similarity=0.088 Sum_probs=43.9
Q ss_pred CCcHHHHHHHHhhCCCEEEEeCCCCCCCCCCCeeEEEECCEEEEEecCcccccC-------------CCH-----HHHHH
Q 031964 1 MTFQEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPW-------------GDL-----DSLAM 62 (150)
Q Consensus 1 ~~~~ev~~~l~~~~~~~~~V~GN~D~~~~lp~~~~~~~~~~~i~~~HG~~~~~~-------------~~~-----~~l~~ 62 (150)
|.++.+++.|++.+ +..|. ...++|. ++.=|+=.||-+.... ..+ ....+
T Consensus 40 vHN~~vv~~l~~~G--v~~v~----~~~~~~~------~~~vii~aHG~~~~~~~~~~~~~~~viDaTCP~V~k~~~~~~ 107 (647)
T PRK00087 40 IHNNQVVEKLKKKG--IKPIE----DIDELNE------GDTIIIRSHGVPPEVLEELKDKGLKVIDATCPFVKNIQKLAK 107 (647)
T ss_pred cCCHHHHHHHHHCC--CEEeC----CHhhCCC------CCEEEEeCCCCCHHHHHHHHHCCCeEEECCCcCchHHHHHHH
Confidence 45788999999887 44552 2234553 3344666788754211 001 12233
Q ss_pred HHhhCCCcEEEECCCCCcceEEE
Q 031964 63 LQRQLDVDILVTGHTHQFTAYKH 85 (150)
Q Consensus 63 ~~~~~~~div~~GHtH~~~~~~~ 85 (150)
.....++.+++.|+-..|.+.-.
T Consensus 108 ~~~~~g~~ivi~G~~~HpEv~g~ 130 (647)
T PRK00087 108 KYYEEGYQIVIVGDKNHPEVIGI 130 (647)
T ss_pred HHHhCCCEEEEEeCCCCCeeeee
Confidence 34456899999999999976543
No 204
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=20.42 E-value=5.3e+02 Score=21.96 Aligned_cols=71 Identities=7% Similarity=0.041 Sum_probs=43.0
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCCCCCeeEEEECCEEEEEecCcccccCCCHHHHHHHHhhCCCcEEEECCCCC
Q 031964 4 QEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQ 79 (150)
Q Consensus 4 ~ev~~~l~~~~~~~~~V~GN~D~~~~lp~~~~~~~~~~~i~~~HG~~~~~~~~~~~l~~~~~~~~~div~~GHtH~ 79 (150)
..++..+++++..+++|..+.|... +. +...+..+.+-.+.......+.+.+.+++++.++|.|+.|..+.
T Consensus 15 ~~iiraar~lGi~~V~v~s~~d~~a-~~----~~~AD~~~~i~~~~~~~syld~~~i~~~a~~~~~daI~pg~gfl 85 (499)
T PRK08654 15 IRVMRACRELGIKTVAVYSEADKNA-LF----VKYADEAYPIGPAPPSKSYLNIERIIDVAKKAGADAIHPGYGFL 85 (499)
T ss_pred HHHHHHHHHcCCeEEEEeccccccc-cc----hhhCCEEEEcCCCCcccCccCHHHHHHHHHHhCCCEEEECCCcc
Confidence 3567788899887888887777521 11 11223222222222222233567788888899999999987543
Done!