BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031965
(150 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54ML6|MOG1_DICDI Probable ran guanine nucleotide release factor OS=Dictyostelium
discoideum GN=mog1 PE=3 SV=1
Length = 195
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 5/149 (3%)
Query: 3 GDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGD 62
+ + +R L+GGAI P RF DV++ R +PDHQE+F D D+S+I EL +F+ + +
Sbjct: 2 SETFEKRQLYGGAIEIDIPRRFIDVTSYRHIPDHQELFSDEKSDQSVIIELNEFQDHISN 61
Query: 63 NGSAAW----FLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMGRQGRE 118
+ ++D D + E P +P V A ++ +
Sbjct: 62 ANAIKHHYEVLVEDAGISTDKSVILNFRELTQAEMPNFD-ASIPKYVLLAQQKIAKFNET 120
Query: 119 AQNIVKVYLANLRLKEVGTDVLVTAYEPL 147
A+N + +Y+A +RL++ TD+L+T E +
Sbjct: 121 AENTINIYMALVRLEKSKTDLLITFNEAI 149
>sp|Q32PE2|MOG1_BOVIN Ran guanine nucleotide release factor OS=Bos taurus GN=RANGRF PE=2
SV=1
Length = 186
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 77/140 (55%), Gaps = 1/140 (0%)
Query: 8 ERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAA 67
+ PLFGGA S++ P DVS++R VPDHQEVF D+SLI ELL+ + V +A
Sbjct: 6 DNPLFGGAFSATLPPGAIDVSDLRPVPDHQEVFCHRVTDQSLIVELLELQAHVQGEEAAR 65
Query: 68 WFLQDLATEQDAEGCTL-LEQSGVVEAPGLRYKDLPATVTTAVGQMGRQGREAQNIVKVY 126
+ +D+ Q+A + Q V+E LR A + + Q+ ++ ++ V ++
Sbjct: 66 YHFEDVGGVQEARAVQVETVQPLVLEKLALRGCCQEAWILSGQQQVAKENQQVAKYVTLH 125
Query: 127 LANLRLKEVGTDVLVTAYEP 146
A LRL + TD+L+T +P
Sbjct: 126 QALLRLPQYQTDLLLTFNQP 145
>sp|Q9JIB0|MOG1_MOUSE Ran guanine nucleotide release factor OS=Mus musculus GN=Rangrf
PE=1 SV=1
Length = 185
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 1/138 (0%)
Query: 10 PLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWF 69
PLFGGA S+ P DVS++R VPD+QEVF P D+SLI ELL+ + V +A +
Sbjct: 8 PLFGGAFSAILPTGAIDVSDLRPVPDNQEVFCHPVTDQSLIIELLELQAHVQGEAAARYH 67
Query: 70 LQDLATEQDAEGCTLLE-QSGVVEAPGLRYKDLPATVTTAVGQMGRQGREAQNIVKVYLA 128
+D+ Q A +L Q +E LR A + Q+ ++ ++ V ++ A
Sbjct: 68 FEDVGRVQGARAVHVLSVQPLCLENLSLRGCCQDAWSLSGKQQVAKENQQVAKDVTLHQA 127
Query: 129 NLRLKEVGTDVLVTAYEP 146
LRL + TD+L+T +P
Sbjct: 128 LLRLPQYQTDLLLTFNQP 145
>sp|Q9HD47|MOG1_HUMAN Ran guanine nucleotide release factor OS=Homo sapiens GN=RANGRF
PE=1 SV=1
Length = 186
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 75/138 (54%), Gaps = 1/138 (0%)
Query: 10 PLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWF 69
PLFGGA S+ P DVS++R VPD+QEVF P D+SLI ELL+ + V +A +
Sbjct: 8 PLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRGEAAARYH 67
Query: 70 LQDLATEQDAEGCTLLE-QSGVVEAPGLRYKDLPATVTTAVGQMGRQGREAQNIVKVYLA 128
+D+ Q A + Q +E LR + A V + Q+ ++ ++ V ++ A
Sbjct: 68 FEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVAKDVTLHQA 127
Query: 129 NLRLKEVGTDVLVTAYEP 146
LRL + TD+L+T +P
Sbjct: 128 LLRLPQYQTDLLLTFNQP 145
>sp|O75002|MOG1_SCHPO Nuclear import protein mog1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mog1 PE=3 SV=1
Length = 190
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 74/143 (51%), Gaps = 6/143 (4%)
Query: 11 LFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDE-SLIFELLDFKLDVGDNGSAAWF 69
LFGGA+ + FP +F D S +RQ+PD+QEVF+ S++ ++I ELL+ D AA+
Sbjct: 4 LFGGALCADFPPKFLDASVLRQIPDNQEVFLQDSKENLTVIIELLEKIEKPFDGSVAAYH 63
Query: 70 LQDLATEQDAEGCTLLEQSGVVEA--PGLRYKDLPATVTTA---VGQMGRQGREAQNIVK 124
+A + DA + + E G+R + + V + G++ E+ V
Sbjct: 64 FNSIAFDNDASQRVIWRDKSLGEDDFEGMRSEKASGSSVQGCQRVLEKGKRNPESATNVA 123
Query: 125 VYLANLRLKEVGTDVLVTAYEPL 147
+++ + L + TD++++ PL
Sbjct: 124 IFVNVITLIDFQTDIVISVNAPL 146
>sp|P47123|MOG1_YEAST Nuclear import protein MOG1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MOG1 PE=1 SV=1
Length = 218
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 75/152 (49%), Gaps = 20/152 (13%)
Query: 8 ERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRD-----------ESLIFELLDF 56
E L+GGAI++ P F D S +R+VPD QEV+V+ RD ES+I +LL+
Sbjct: 35 EVELYGGAITTVVPPGFIDASTLREVPDTQEVYVNSRRDEEEFEDGLATNESIIVDLLE- 93
Query: 57 KLDVGDNGSAAWF-LQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMGRQ 115
+D D A F ++DL L++ V + G ++ L V G+
Sbjct: 94 TVDKSDLKEAWQFHVEDLTELNGTTKWEALQEDTVQQ--GTKFTGLVMEVANKWGKPDL- 150
Query: 116 GREAQNIVKVYLANLRLKEVGTDVLVTAYEPL 147
AQ +V + +A +RL + TDV+++ PL
Sbjct: 151 ---AQTVV-IGVALIRLTQFDTDVVISINVPL 178
>sp|Q9VW15|ASH1_DROME Histone-lysine N-methyltransferase ash1 OS=Drosophila melanogaster
GN=ash1 PE=1 SV=3
Length = 2226
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 82 CTLLEQSGVVEAPGLRYKDLPATVTTAVGQ--MGRQGREAQNIVKVYLANLRLKEVGTDV 139
C + GV+ R K LPA G+ GR GR+ + K + K++ + V
Sbjct: 1520 CNTPQCRGVIGGKSQRVKPLPAVEAKPSGEGLSGRNGRQRKQKAKKHAQRQAGKDISSAV 1579
Query: 140 LVTAYEPL 147
V +PL
Sbjct: 1580 AVAKLQPL 1587
>sp|Q9DBS9|OSBL3_MOUSE Oxysterol-binding protein-related protein 3 OS=Mus musculus
GN=Osbpl3 PE=1 SV=2
Length = 855
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 35 DHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQDAEGCTL---LEQSGVV 91
D QEV + PS E+ I + + D+ DN S L +L+ + D E TL LE SG
Sbjct: 421 DAQEVLLSPSSSENEISDDDSYVSDISDNLS----LDNLSNDLDNERQTLGPVLESSG-- 474
Query: 92 EAPGLRYKDLPA 103
EA R LPA
Sbjct: 475 EARSKRRTSLPA 486
>sp|Q7VHF2|LPXC_HELHP UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1)
GN=lpxC PE=3 SV=1
Length = 299
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 73 LATEQDAEGCTLLEQSGVVEAPGLRYKD--LPATVTTAVGQMGRQG 116
LA D C +L++S ++ GLRYK+ + + A+G M G
Sbjct: 200 LAKGGDLSNCIVLDESSILNKEGLRYKEEFVRHKILDAIGDMALLG 245
>sp|Q60323|Y017_METJA Uncharacterized protein MJ0017 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0017 PE=4 SV=1
Length = 214
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 18 SSFPHRFQDVSN--IRQVPDHQ--EVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDL 73
S F +F+D+S+ +R + H+ EV +P R E + + + KL VGD AW D+
Sbjct: 45 SLFLSQFEDISHESVR-IYYHKIKEVLNEPERKERNLIAIDEIKLKVGDKYIYAWSAIDV 103
Query: 74 ATEQ 77
T++
Sbjct: 104 ETKE 107
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,244,280
Number of Sequences: 539616
Number of extensions: 2144239
Number of successful extensions: 5229
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 5219
Number of HSP's gapped (non-prelim): 13
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)