Query 031965
Match_columns 150
No_of_seqs 102 out of 193
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 07:48:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031965.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031965hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04603 Mog1: Ran-interacting 100.0 2.2E-56 4.9E-61 340.6 10.2 138 9-147 2-141 (141)
2 cd00224 Mog1 homolog to Ran-Bi 100.0 3.2E-52 6.9E-57 327.1 14.3 135 9-148 1-135 (173)
3 KOG3329 RAN guanine nucleotide 100.0 1.1E-41 2.3E-46 264.9 -1.9 144 4-147 2-147 (185)
4 PRK11615 hypothetical protein; 82.5 2.8 6.1E-05 33.6 4.8 48 6-53 40-88 (185)
5 KOG0429 Ubiquitin-conjugating 38.2 17 0.00038 30.2 1.2 36 6-41 56-94 (258)
6 TIGR02276 beta_rpt_yvtn 40-res 30.8 59 0.0013 18.1 2.4 16 34-49 1-16 (42)
7 TIGR01376 POMP_repeat Chlamydi 24.5 42 0.0009 18.1 0.9 8 12-19 15-22 (27)
8 PF11567 PfUIS3: Plasmodium fa 24.1 33 0.00071 24.7 0.5 14 64-77 33-46 (101)
9 PF07824 Chaperone_III: Type I 22.1 71 0.0015 23.6 2.0 18 118-137 72-89 (112)
10 PF08786 DUF1795: Domain of un 21.3 78 0.0017 22.7 2.1 28 17-52 3-33 (130)
No 1
>PF04603 Mog1: Ran-interacting Mog1 protein; InterPro: IPR007681 Segregation of nuclear and cytoplasmic processes facilitates regulation of many eukaryotic cellular functions such as gene expression and cell cycle progression. Trafficking through the nuclear pore requires a number of highly conserved soluble factors that escort macromolecular substrates into and out of the nucleus. The Mog1 protein has been shown to interact with RanGTP, which stimulates guanine nucleotide release, suggesting Mog1 regulates the nuclear transport functions of Ran []. The human homologue of Mog1 is thought to be alternatively spliced.; PDB: 1JHS_A 1EQ6_A.
Probab=100.00 E-value=2.2e-56 Score=340.59 Aligned_cols=138 Identities=43% Similarity=0.671 Sum_probs=100.6
Q ss_pred cccccceeEeeCCCCccccccccccCCcceEEecCCCCceEEEEeeecccCCCchhHHHHHHHhhhcccCCCCceEEeee
Q 031965 9 RPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQDAEGCTLLEQS 88 (150)
Q Consensus 9 ~~LfGGAit~~lP~~fiDvS~lRqVPDnQEVF~~~~~d~SiIvEiLE~~~~~~d~~A~~~Hf~dla~~n~~~~~~~i~~~ 88 (150)
++||||||++.||++|+|+|+|||||||||||+++++|+|||||||||+++.+|++|++|||+|||++|++.+ ..++..
T Consensus 2 ~~LyGGAi~~~lP~~f~DvS~~RqVPD~QEVf~~~~~d~SiIielle~~~~~~d~~a~~~hf~dla~~n~a~~-~~i~~~ 80 (141)
T PF04603_consen 2 RPLYGGAITCDLPSGFIDVSDFRQVPDNQEVFVDPSTDQSIIIELLERVEEVDDEEAARFHFEDLADDNDASS-STILSV 80 (141)
T ss_dssp EEEGGGTEEEEE-TTEEEGGGTS---TTEEEEEE--S--EEEEEEEE--S--SHHHHHHHHHHHHHHCCTEEE-EE----
T ss_pred ccccCceEEEeCCCCccchhhceeCCCCCEEeEeCCCCeEEEEEEecccCCCChHHHHHHHHHhhhcccCccc-eeeecc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999865 345555
Q ss_pred eeeccCCCCCCCCCceEEEEEeee--ccCCCCccceEEEEEEEEEcCCCCeeEEEEEecCc
Q 031965 89 GVVEAPGLRYKDLPATVTTAVGQM--GRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPL 147 (150)
Q Consensus 89 ~~~~~~~~p~~~~~~~~~~~~g~~--~k~~~~~~~~V~i~l~liRL~~~~TDilit~NvP~ 147 (150)
.+++...++.......++.+.|.| +|+++++++.|.||||||||++++||||||+|+|+
T Consensus 81 ~~l~~~~~~~~~~~~~~~~l~G~q~v~K~~~~~~~~v~i~laliRL~~~~TDilIt~N~Pl 141 (141)
T PF04603_consen 81 EPLSEDQLGLPSECPSASVLVGTQKVAKFNEEAANTVRIYLALIRLPEVSTDILITVNVPL 141 (141)
T ss_dssp -EEEEEEEE-TTTEEEEEEEEEEETTS---TTSS--EEEEEEEEEEGGGTEEEEEEEEEE-
T ss_pred cccccccccCCCCCccEEEEEeccccccccccCCCeEEEEEEEEeCCCCCCeEEEEeccCC
Confidence 566554443222233457788887 78888889999999999999999999999999996
No 2
>cd00224 Mog1 homolog to Ran-Binding Protein Mog1p; binds to the small GTPase Ran, which plays an important role in nuclear import. Binding is independent of Ran's nucleotide state (RanGTP/RanGDP)
Probab=100.00 E-value=3.2e-52 Score=327.07 Aligned_cols=135 Identities=38% Similarity=0.545 Sum_probs=114.5
Q ss_pred cccccceeEeeCCCCccccccccccCCcceEEecCCCCceEEEEeeecccCCCchhHHHHHHHhhhcccCCCCceEEeee
Q 031965 9 RPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQDAEGCTLLEQS 88 (150)
Q Consensus 9 ~~LfGGAit~~lP~~fiDvS~lRqVPDnQEVF~~~~~d~SiIvEiLE~~~~~~d~~A~~~Hf~dla~~n~~~~~~~i~~~ 88 (150)
++||||||++.||++|+|+|+|||||||||||+++++|+|||||||||+++.+|.+|++|||+|||++|++.+ ..+++.
T Consensus 1 ~~LfGGAI~~~lP~~f~DvS~lRqVPDnQEVF~~~~~d~SiIiElLe~~~~~~d~~a~~~h~~dla~~n~~~~-~~v~~~ 79 (173)
T cd00224 1 CPLFGGAFSAILPPGFIDVSDLRPVPDNQEVFCHPSTDQSLIVELLELQAHVRDEEAARYHFEDLASVNDAEG-VEVLSV 79 (173)
T ss_pred CCccCceEEEeCCCcccchhcceeCCCCcEEEEcCCCCeEEEEEeeccccCCChHHHHHHHHHHHhccccCcc-eEEeec
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999876 556766
Q ss_pred eeeccCCCCCCCCCceEEEEEeeeccCCCCccceEEEEEEEEEcCCCCeeEEEEEecCcc
Q 031965 89 GVVEAPGLRYKDLPATVTTAVGQMGRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLL 148 (150)
Q Consensus 89 ~~~~~~~~p~~~~~~~~~~~~g~~~k~~~~~~~~V~i~l~liRL~~~~TDilit~NvP~~ 148 (150)
.+++....+..... .+.+.|+|+ +++++++|.+|||||||++++||||||+|+|+.
T Consensus 80 ~~~~~~~~~~~~~~--~~~~~g~q~--~~~~~~~v~i~l~liRL~~~~TDilit~NvP~~ 135 (173)
T cd00224 80 QPLSLEGTSLTGCC--AWLLSGKQE--NQEVAKDVTIHVALIRLPQYQTDLLLTFNQPPP 135 (173)
T ss_pred cccccCccccccee--eEEeecccc--cccCcCeeEEEEEEEECCCccccEEEEEecCCc
Confidence 66655332222111 344556554 335678899999999999999999999999975
No 3
>KOG3329 consensus RAN guanine nucleotide release factor [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-41 Score=264.93 Aligned_cols=144 Identities=43% Similarity=0.548 Sum_probs=111.2
Q ss_pred CCCcccccccceeEeeCCCCccccccccccCCcceEEecCCCCceEEEEeeecccCCCchhHHHHHHHhhhcccCCCCce
Q 031965 4 DLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQDAEGCT 83 (150)
Q Consensus 4 ~~~~~~~LfGGAit~~lP~~fiDvS~lRqVPDnQEVF~~~~~d~SiIvEiLE~~~~~~d~~A~~~Hf~dla~~n~~~~~~ 83 (150)
++.+.+|||||||++.+|.+|||||+|||||||||||+++++|+|+|+||||.++++.|+.++.|||+|++..|++....
T Consensus 2 e~~~~~pLfGGAisav~P~gfiDvS~LRqVPDnQEVfv~p~rDesli~eLle~~a~v~d~~~a~~~~n~~~~~q~a~e~~ 81 (185)
T KOG3329|consen 2 EPTRDVPLFGGAISAVFPPGFIDVSDLRQVPDNQEVFVHPSRDESLIVELLELQAHVRDELEAVYHFNDLAAWQDAVEDL 81 (185)
T ss_pred CcccccccccceeeeccCcccccHhhcccCCCCceEeecCCchHHHHHHHHhhhhhccchhhhhhhhhhHHHhhhhHhhh
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999865322
Q ss_pred E-EeeeeeeccCCCCCCCCCceEEEEEeee-ccCCCCccceEEEEEEEEEcCCCCeeEEEEEecCc
Q 031965 84 L-LEQSGVVEAPGLRYKDLPATVTTAVGQM-GRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPL 147 (150)
Q Consensus 84 ~-i~~~~~~~~~~~p~~~~~~~~~~~~g~~-~k~~~~~~~~V~i~l~liRL~~~~TDilit~NvP~ 147 (150)
+ +..+.....-++......++.+..++++ .|++......++.+..++||++++||++||+|.|+
T Consensus 82 ~~~~~sl~~e~~~l~~r~q~a~~t~~~~q~v~k~nkr~~~~~t~v~v~lrlpqfqtdlviS~Nap~ 147 (185)
T KOG3329|consen 82 TESNQSLSWEALGLDGRCQEAWVTSGKMQQVAKENKRVAKDVTLVQVLLRLPQFQTDLVISFNAPL 147 (185)
T ss_pred hhhccccccccccccchhhhhhhhhhHHHHHHHcCCccchhhhhhhhhhcccccccceEEEecCCC
Confidence 1 1222222222222233344434444454 55554444445566666699999999999999997
No 4
>PRK11615 hypothetical protein; Provisional
Probab=82.52 E-value=2.8 Score=33.58 Aligned_cols=48 Identities=21% Similarity=0.328 Sum_probs=36.7
Q ss_pred CcccccccceeEeeCCCCccccccccc-cCCcceEEecCCCCceEEEEe
Q 031965 6 YSERPLFGGAISSSFPHRFQDVSNIRQ-VPDHQEVFVDPSRDESLIFEL 53 (150)
Q Consensus 6 ~~~~~LfGGAit~~lP~~fiDvS~lRq-VPDnQEVF~~~~~d~SiIvEi 53 (150)
..++.|-||-++..||.+|-|-|.--- --.|=-||.|+.+...+||=+
T Consensus 40 ~q~VSLLdGKl~FtLPag~sdqsgk~Gtq~nn~~vYad~tg~kavIVi~ 88 (185)
T PRK11615 40 GQPVSLLDGKLSFTLPADMSDQSGKLGTQANNMHVYADATGQKAVIVIL 88 (185)
T ss_pred CceeEEeccEEEEEcCCccccccccccccccceEEEEcCCCCEEEEEEe
Confidence 457889999999999999999985522 222345888988888887653
No 5
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=38.18 E-value=17 Score=30.24 Aligned_cols=36 Identities=25% Similarity=0.522 Sum_probs=28.2
Q ss_pred Cccccccccee---EeeCCCCccccccccccCCcceEEe
Q 031965 6 YSERPLFGGAI---SSSFPHRFQDVSNIRQVPDHQEVFV 41 (150)
Q Consensus 6 ~~~~~LfGGAi---t~~lP~~fiDvS~lRqVPDnQEVF~ 41 (150)
|....||||.+ |+.||.+|=|.|++--|==.|+||=
T Consensus 56 Fvr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfH 94 (258)
T KOG0429|consen 56 FVRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFH 94 (258)
T ss_pred EEecccccCceEEEEEEcCccCCCcCCCCeEEeeccccc
Confidence 34567898874 7899999999999966666677774
No 6
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=30.80 E-value=59 Score=18.11 Aligned_cols=16 Identities=25% Similarity=0.571 Sum_probs=11.2
Q ss_pred CCcceEEecCCCCceE
Q 031965 34 PDHQEVFVDPSRDESL 49 (150)
Q Consensus 34 PDnQEVF~~~~~d~Si 49 (150)
||++.+|+....+.+|
T Consensus 1 pd~~~lyv~~~~~~~v 16 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTV 16 (42)
T ss_pred CCCCEEEEEeCCCCEE
Confidence 8899999966544333
No 7
>TIGR01376 POMP_repeat Chlamydial polymorphic outer membrane protein repeat. This repeat is observed, but is very rare, outside the Chlamydias.
Probab=24.52 E-value=42 Score=18.11 Aligned_cols=8 Identities=50% Similarity=0.729 Sum_probs=6.8
Q ss_pred ccceeEee
Q 031965 12 FGGAISSS 19 (150)
Q Consensus 12 fGGAit~~ 19 (150)
.||||.+.
T Consensus 15 ~GGAI~~~ 22 (27)
T TIGR01376 15 SGGAIYAT 22 (27)
T ss_pred cccEEEEe
Confidence 79999875
No 8
>PF11567 PfUIS3: Plasmodium falciparum UIS3 membrane protein; InterPro: IPR021626 UIS3 is a membrane protein essential for sporozoite development in infected hepatocytes. This family is 130-229 of the Plasmodium falciparum UIS3 protein which is compact and has an all alpha-helical structure.PfUIS3(130-229) interacts with lipids, phospholipid lysosomes, the human liver fatty acid-binding protein and with the lipid phosphatidylethanolamine. The interaction with liver fatty acid-binding protein provides the parasite with a method to import essential fatty acids/lipids during rapid growth phases of sporozoites []. ; PDB: 2VWA_C.
Probab=24.08 E-value=33 Score=24.69 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=10.9
Q ss_pred hHHHHHHHhhhccc
Q 031965 64 GSAAWFLQDLATEQ 77 (150)
Q Consensus 64 ~A~~~Hf~dla~~n 77 (150)
-|+++||++|..+.
T Consensus 33 la~qhHF~~LSn~Q 46 (101)
T PF11567_consen 33 LAAQHHFSNLSNEQ 46 (101)
T ss_dssp HHHHHHHHHS-HHH
T ss_pred HHHHHHHHhcCcHH
Confidence 48999999998754
No 9
>PF07824 Chaperone_III: Type III secretion chaperone domain; InterPro: IPR013095 Type III secretion chaperones are involved in delivering virulence effector proteins from bacterial pathogens directly into eukaryotic cells. The chaperones may prevent aggregation and degradation of their substrates, may target the effector to the secretion apparatus, and may ensure a secretion-component unfolded conformation of their specific substrate. One member of this family, SigE (O30917 from SWISSPROT) forms homodimers in crystal. The monomers have a novel fold with an alpha-beta(3)-alpha-beta(2)-alpha topology []. ; PDB: 1K3S_B.
Probab=22.07 E-value=71 Score=23.61 Aligned_cols=18 Identities=44% Similarity=0.547 Sum_probs=13.4
Q ss_pred CccceEEEEEEEEEcCCCCe
Q 031965 118 EAQNIVKVYLANLRLKEVGT 137 (150)
Q Consensus 118 ~~~~~V~i~l~liRL~~~~T 137 (150)
++.+++ .+|+.|||+.++
T Consensus 72 Da~~t~--L~Al~rlp~~s~ 89 (112)
T PF07824_consen 72 DAENTV--LLALYRLPQTST 89 (112)
T ss_dssp -TTSSE--EEEEEEEETTS-
T ss_pred cCCCce--eeeeeecCCCCc
Confidence 566755 899999999875
No 10
>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function. It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.
Probab=21.34 E-value=78 Score=22.74 Aligned_cols=28 Identities=32% Similarity=0.522 Sum_probs=17.9
Q ss_pred EeeCCCCccccccccccCCcceEEecCCC---CceEEEE
Q 031965 17 SSSFPHRFQDVSNIRQVPDHQEVFVDPSR---DESLIFE 52 (150)
Q Consensus 17 t~~lP~~fiDvS~lRqVPDnQEVF~~~~~---d~SiIvE 52 (150)
+..||.+|.|-| --||+.++. ..|++|=
T Consensus 3 ~~~lP~~~~D~t--------~nv~~~~~~~~~~~slvIs 33 (130)
T PF08786_consen 3 SLTLPDGWQDRT--------MNVLVLPDSGGSGPSLVIS 33 (130)
T ss_dssp EEEEETTSEE----------BEEEEE--BTTB-EEEEEE
T ss_pred eEeCCCcceece--------EEEEEccCCCCCcceEEEE
Confidence 467899999987 478987776 6677764
Done!