Query 031965
Match_columns 150
No_of_seqs 102 out of 193
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 12:21:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031965.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031965hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1eq6_A MOG1P; alpha-beta, prot 100.0 7.9E-52 2.7E-56 327.6 14.0 136 4-148 2-150 (189)
2 3gio_A Putative uncharacterize 59.5 3.2 0.00011 31.7 1.2 32 34-78 127-158 (186)
3 2wcr_A TNF-alpha inducer prote 53.1 4.3 0.00015 30.2 1.0 33 34-79 100-132 (159)
4 4dov_A ORC1, origin recognitio 24.8 33 0.0011 25.9 1.8 11 34-44 99-109 (163)
5 2vwa_A Putative uncharacterize 23.8 21 0.00071 24.7 0.5 14 64-77 33-46 (101)
6 3nfg_B DNA-directed RNA polyme 22.2 46 0.0016 24.0 2.1 26 16-41 3-34 (123)
7 1k3s_A SIGE; type III, secreti 18.3 67 0.0023 22.7 2.2 18 118-137 73-90 (113)
8 2law_A Yorkie homolog; YAP, SM 17.9 82 0.0028 17.4 2.2 31 14-48 1-31 (38)
9 1tu1_A Hypothetical protein PA 14.8 1.1E+02 0.0038 21.6 2.8 36 9-54 6-45 (148)
10 3ijm_A Uncharacterized restric 14.7 1E+02 0.0035 22.8 2.5 58 13-71 46-104 (151)
No 1
>1eq6_A MOG1P; alpha-beta, protein transport; 1.90A {Saccharomyces cerevisiae} SCOP: d.107.1.1 PDB: 1jhs_A
Probab=100.00 E-value=7.9e-52 Score=327.58 Aligned_cols=136 Identities=28% Similarity=0.414 Sum_probs=111.8
Q ss_pred CCCcccccccceeEeeCCCCccccccccccCCcceEEecCC-----------CCceEEEEeeecccCCCchhHHHHHHHh
Q 031965 4 DLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPS-----------RDESLIFELLDFKLDVGDNGSAAWFLQD 72 (150)
Q Consensus 4 ~~~~~~~LfGGAit~~lP~~fiDvS~lRqVPDnQEVF~~~~-----------~d~SiIvEiLE~~~~~~d~~A~~~Hf~d 72 (150)
+..++++||||||++.||++|+|||+|||||||||||++++ +|+|||||||||+++++|.+|++|||+|
T Consensus 2 m~~~~~~LfGGAI~~~lP~~f~DvS~lRqVPDnQEVFv~~~~~~~~~~~~~~~d~SiIiElLE~v~~~~d~~A~~~hf~D 81 (189)
T 1eq6_A 2 MNNKEVELYGGAITTVVPPGFIDASTLREVPDTQEVYVNSRRDEEEFEDGLATNESIIVDLLETVDKSDLKEAWQFHVED 81 (189)
T ss_dssp CCCEEEEEGGGTEEEEECTTEEEGGGTSCCCTTEEEEEECCCSSCCCSSSCCSCCEEEEEEEECCSCCSHHHHHHHHHHH
T ss_pred CccccccccCceEEeeCCCCccchhhcccCCCCcEEEEcCcccccccccccCCCceEEEEeecccCCcChHHHHHHHHHH
Confidence 44458899999999999999999999999999999999975 8999999999999999999999999999
Q ss_pred hhcccCCCCceEEeeeeeeccCCCCCCCCCceEE-EEEeeeccCC-CCccceEEEEEEEEEcCCCCeeEEEEEecCcc
Q 031965 73 LATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVT-TAVGQMGRQG-REAQNIVKVYLANLRLKEVGTDVLVTAYEPLL 148 (150)
Q Consensus 73 la~~n~~~~~~~i~~~~~~~~~~~p~~~~~~~~~-~~~g~~~k~~-~~~~~~V~i~l~liRL~~~~TDilit~NvP~~ 148 (150)
||++|++.++.++. .+.++. +.+.| ++.+...|++ ...++.|.||||||||++++||||||+|+|++
T Consensus 82 la~~n~~~~~~v~~-~~~~~~--------~~~~~~~~~~~~~k~~~~~~~~~v~i~l~liRL~~~~TDiLIt~NvP~~ 150 (189)
T 1eq6_A 82 LTELNGTTKWEALQ-EDTVQQ--------GTKFTGLVMEVANKWGKPDLAQTVVIGVALIRLTQFDTDVVISINVPLT 150 (189)
T ss_dssp HHGGGTEEEEEEEE-EEEEET--------TTEEEEEEEEEEETTSCTTSSCCEEEEEEEEEEGGGTEEEEEEEEEECC
T ss_pred HhhcccCcceeEEe-ecccCC--------CCcceEEEEeeeeccCccccccceEEEEEEEecCCCCccEEEEEecCCC
Confidence 99999976555443 334431 12223 3333444443 34578899999999999999999999999975
No 2
>3gio_A Putative uncharacterized protein; antiparallel beta sheet, four-helix bundle, loop, DNA binding protein; 2.40A {Helicobacter pylori}
Probab=59.53 E-value=3.2 Score=31.66 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=19.3
Q ss_pred CCcceEEecCCCCceEEEEeeecccCCCchhHHHHHHHhhhcccC
Q 031965 34 PDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQD 78 (150)
Q Consensus 34 PDnQEVF~~~~~d~SiIvEiLE~~~~~~d~~A~~~Hf~dla~~n~ 78 (150)
|.|||||+ |=|++. -+.+++..-+++|+-+|.
T Consensus 127 PNN~EVFm------------LvRv~g-y~~~~L~~~L~~isLd~~ 158 (186)
T 3gio_A 127 PNNEEVFA------------LVRARG-FDKDALSEGLHKMSLDNQ 158 (186)
T ss_dssp TTTTEEEE------------EEEEEE-ECHHHHHHHHHTTTCCHH
T ss_pred CCCceeEE------------EEEecc-CCHHHHHHHHHHhhccHH
Confidence 99999997 233331 234566666666654443
No 3
>2wcr_A TNF-alpha inducer protein; HP0596, TIP-alpha, immune system; 1.70A {Helicobacter pylori} PDB: 2wcq_A 3guq_A
Probab=53.08 E-value=4.3 Score=30.24 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=21.2
Q ss_pred CCcceEEecCCCCceEEEEeeecccCCCchhHHHHHHHhhhcccCC
Q 031965 34 PDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQDA 79 (150)
Q Consensus 34 PDnQEVF~~~~~d~SiIvEiLE~~~~~~d~~A~~~Hf~dla~~n~~ 79 (150)
|.|||||+ |=|+.. -+.+++..-+++|+-+|.+
T Consensus 100 PNN~EVF~------------LvRv~~-y~~~~L~~~L~kisLdnqt 132 (159)
T 2wcr_A 100 PNNEEVFA------------LVRARG-FDKDALSEGLHKMSLDNQA 132 (159)
T ss_dssp TTTCCEEE------------EEEEEE-ECHHHHHHHHHTTTCCHHH
T ss_pred CCChheEE------------EEeecc-CCHHHHHHHHHHhhcchHH
Confidence 99999997 333332 2456777777777655543
No 4
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=24.83 E-value=33 Score=25.94 Aligned_cols=11 Identities=36% Similarity=0.501 Sum_probs=9.0
Q ss_pred CCcceEEecCC
Q 031965 34 PDHQEVFVDPS 44 (150)
Q Consensus 34 PDnQEVF~~~~ 44 (150)
||.||||....
T Consensus 99 ~~~qEIF~~d~ 109 (163)
T 4dov_A 99 PPAQEIFWYDC 109 (163)
T ss_dssp CCTTEEEEECC
T ss_pred CCCCeEEEecC
Confidence 88999999543
No 5
>2vwa_A Putative uncharacterized protein PF13_0012; unknown function; HET: PTY; 2.5A {Plasmodium falciparum}
Probab=23.78 E-value=21 Score=24.73 Aligned_cols=14 Identities=21% Similarity=0.200 Sum_probs=11.7
Q ss_pred hHHHHHHHhhhccc
Q 031965 64 GSAAWFLQDLATEQ 77 (150)
Q Consensus 64 ~A~~~Hf~dla~~n 77 (150)
-|+++||++|..+.
T Consensus 33 la~qhHF~~LSn~Q 46 (101)
T 2vwa_A 33 LSIQKHFEHLSNDQ 46 (101)
T ss_dssp HHHHHHHHHSCHHH
T ss_pred HHHHHHHHhcCcHH
Confidence 48999999998754
No 6
>3nfg_B DNA-directed RNA polymerase I subunit RPA34; triple barrel, transcription, dimerization; 2.51A {Candida glabrata} PDB: 3nff_B
Probab=22.23 E-value=46 Score=23.99 Aligned_cols=26 Identities=15% Similarity=0.576 Sum_probs=22.5
Q ss_pred eEeeCCCCccccccccccC------CcceEEe
Q 031965 16 ISSSFPHRFQDVSNIRQVP------DHQEVFV 41 (150)
Q Consensus 16 it~~lP~~fiDvS~lRqVP------DnQEVF~ 41 (150)
|...-|++|-=++.+...| +++|||+
T Consensus 3 ~~F~pP~~y~K~~~lk~f~~~~~~l~~KevWl 34 (123)
T 3nfg_B 3 MGYQPPSDYKQCKHLKSFPVSELKGDNKELWL 34 (123)
T ss_dssp -CCCCCTTEEECCSCBCCCGGGTTCTTEEEEE
T ss_pred ccccCCCCcccccchhhcccccccCCCcEEEE
Confidence 4567799999999999999 8899998
No 7
>1k3s_A SIGE; type III, secretion, chaperone; 1.90A {Salmonella enterica} SCOP: d.198.1.1
Probab=18.32 E-value=67 Score=22.72 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=14.4
Q ss_pred CccceEEEEEEEEEcCCCCe
Q 031965 118 EAQNIVKVYLANLRLKEVGT 137 (150)
Q Consensus 118 ~~~~~V~i~l~liRL~~~~T 137 (150)
++.+++ .+|+.|||+.++
T Consensus 73 Da~~t~--L~Al~rlp~~s~ 90 (113)
T 1k3s_A 73 DADNTA--LVALYRLPQTST 90 (113)
T ss_dssp CTTSCE--EEEEEEEETTSC
T ss_pred cCCCce--EEEeeecCCCCc
Confidence 566655 899999999875
No 8
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=17.94 E-value=82 Score=17.37 Aligned_cols=31 Identities=13% Similarity=0.426 Sum_probs=19.5
Q ss_pred ceeEeeCCCCccccccccccCCcceEEecCCCCce
Q 031965 14 GAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDES 48 (150)
Q Consensus 14 GAit~~lP~~fiDvS~lRqVPDnQEVF~~~~~d~S 48 (150)
|.....||.+|.-.-+ ++.+--|+|..+.++
T Consensus 1 g~~~~~LP~gWe~~~~----~~G~~Yy~nh~t~~t 31 (38)
T 2law_A 1 GAMEGPLPDGWEQAMT----QDGEIYYINHKNKTT 31 (38)
T ss_dssp ----CCCSSSCCEEEE----TTTEEEEEETTTTEE
T ss_pred CCccCCCCCCcEEEEC----CCCCEEEEECCCCCE
Confidence 4556679999965433 678888888776554
No 9
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=14.83 E-value=1.1e+02 Score=21.63 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=25.4
Q ss_pred cccccceeEeeCCCCccccccccccCCcceEEecCCCC----ceEEEEee
Q 031965 9 RPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRD----ESLIFELL 54 (150)
Q Consensus 9 ~~LfGGAit~~lP~~fiDvS~lRqVPDnQEVF~~~~~d----~SiIvEiL 54 (150)
..+-+|.| .||.+|.|-| --||..+..+ .||+|--=
T Consensus 6 y~~~Egsl--~lP~gw~D~t--------~nv~~~~~~~~~g~~~lvIsR~ 45 (148)
T 1tu1_A 6 YRLHEADL--EIPDAWQDQS--------INIFKLPASGPAREASFVISRD 45 (148)
T ss_dssp EECSSEEE--EEETTSEECC--------BEEEEECCBTTBCCEEEEEEEE
T ss_pred EEECCEEE--eCCCCcEeee--------EEEEEcCCCCCCCceEEEEEec
Confidence 45667766 5699999988 3688876644 58877543
No 10
>3ijm_A Uncharacterized restriction endonuclease-like FOL superfamily protein; DUF820, cyanobacteria, PD(D/E)XK superfamily, structural GEN PSI-2; 1.70A {Spirosoma linguale}
Probab=14.66 E-value=1e+02 Score=22.78 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=39.4
Q ss_pred cceeEe-eCCCCccccccccccCCcceEEecCCCCceEEEEeeecccCCCchhHHHHHHH
Q 031965 13 GGAISS-SFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQ 71 (150)
Q Consensus 13 GGAit~-~lP~~fiDvS~lRqVPDnQEVF~~~~~d~SiIvEiLE~~~~~~d~~A~~~Hf~ 71 (150)
-|||.. -||...+|-+.=-.|||== .|=+....+-+|||+-.-..-..|..-++--++
T Consensus 46 ~~~I~lePLPETmldeg~~spvPDv~-L~d~~~~~tpvIIEVc~~~G~K~D~~Kv~~LId 104 (151)
T 3ijm_A 46 SKKIPFEPLPETMLTEGYSSPVPDVL-LYDHQTEEAKVIIEVCQNSGLKHDTSKIVKLIE 104 (151)
T ss_dssp TTSSSSEEEESCCSSSSTTSCCCSEE-EEETTTTEEEEEEEEECGGGHHHHHHHHHHHHH
T ss_pred cCccccccCCccccCCCCCCCCCCEE-EeccccccCcEEEEEecccccchhHHHHHHHHh
Confidence 466665 6899999999999999931 122445678999999877554445444444333
Done!