BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031966
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman
Cys2his2 Zinc Finger Induces Structural Rearrangements
Of Typical Dna Base Determinant Positions
pdb|1NJQ|A Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain
From Arabidopsis Thaliana Superman Protein
Length = 39
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 65 PKLHECSICGQEFAMGQALGGHMRRH 90
P+ + CS C +EF QALGGHM H
Sbjct: 4 PRSYTCSFCKREFRSAQALGGHMNVH 29
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 22 FECKTCNRQFPSFQALGGHRASH 44
+ C C R+F S QALGGH H
Sbjct: 7 YTCSFCKREFRSAQALGGHMNVH 29
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 30.4 bits (67), Expect = 0.38, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 42 ASHKKPRLINGETKTLSSTTATKPKLHECSICGQEFAMGQALGGHMRR-HR 91
A+ KP + + +++ T P + C++C F+ AL H+R HR
Sbjct: 73 ANATKPAAVVSDPQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDHR 123
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 30.4 bits (67), Expect = 0.39, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 42 ASHKKPRLINGETKTLSSTTATKPKLHECSICGQEFAMGQALGGHMRR-HR 91
A+ KP + + +++ T P + C++C F+ AL H+R HR
Sbjct: 91 ANATKPAAVVSDPQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDHR 141
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 29.3 bits (64), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 106 QSPPVLRRSNSSRRVFGLDLNLTPLENDLEVLFGKMAPKVDL 147
+ P LRR+ S+RRV GL+LN + D+E + G +D+
Sbjct: 13 EDPLRLRRAESTRRVLGLELN---KDRDVERIHGGGINTLDI 51
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 1.1, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 66 KLHECSICGQEFAMGQALGGHMRRH 90
K +ECS+CG+ F+ Q+L H R H
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIH 35
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 14/81 (17%)
Query: 22 FECKTCNRQFPSFQALGGHRASHKKPRLINGET------------KTLSSTTATKPKLHE 69
F+CK C + F L H H R + K T KP H+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP--HK 59
Query: 70 CSICGQEFAMGQALGGHMRRH 90
C +CG+ F+ L H R+H
Sbjct: 60 CQVCGKAFSQSSNLITHSRKH 80
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.1 bits (61), Expect = 1.7, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 58 SSTTATKPKLHECSICGQEFAMGQALGGHMRRH 90
S ++ T+ K +ECS CG+ F L H R H
Sbjct: 3 SGSSGTREKPYECSECGKAFIRNSQLIVHQRTH 35
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
Query: 6 SNRAKLPIKKRL--ASDVFECKTCNRQFPSFQALGGHRASH--KKPRLINGETKTLS--- 58
S RA L +R + C C + F L H+ +H +KP K+ S
Sbjct: 88 SQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSRED 147
Query: 59 -----STTATKPKLHECSICGQEFAMGQALGGHMRRH 90
T T K ++C CG+ F+ AL H R H
Sbjct: 148 NLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.7 bits (60), Expect = 2.6, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 66 KLHECSICGQEFAMGQALGGHMRRH 90
K ++C +CG+EF+ L H R H
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVH 35
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
Length = 87
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 22 FECKTCNRQFPSFQALGGHRASH--KKPRLINGETKTLSST--------TATKPKLHECS 71
++C C + F L H+ +H +KP K+ S + T T K ++C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 72 ICGQEFAMGQALGGHMRRHR 91
CG+ F+ L H R H+
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 59 STTATKPKLHECSICGQEFAMGQALGGHMRRH 90
S+ ++ KLHEC+ CG+ F+ L H R H
Sbjct: 2 SSGSSGEKLHECNNCGKAFSFKSQLIIHQRIH 33
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 70 CSICGQEFAMGQALGGHMRRH 90
C +CG++F M L GHM+ H
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIH 60
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 18/88 (20%)
Query: 3 LTRSNRAKLPIKKRLASDVFECKTCNRQFPSFQALGGHRASHKKPRLINGETKTLSSTTA 62
+RS+ I+ F+C+ C R F L H +H T
Sbjct: 16 FSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH----------------TG 59
Query: 63 TKPKLHECSICGQEFAMGQALGGHMRRH 90
KP C ICG++FA H + H
Sbjct: 60 EKP--FACDICGRKFARSDERKRHTKIH 85
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 3 LTRSNRAKLPIKKRLASDVFECKTCNRQFPSFQALGGHRASH 44
+RS++ K ++ F+CKTC R+F L H +H
Sbjct: 48 FSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTH 89
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 18/65 (27%)
Query: 22 FECKTCNRQFPSFQALGGHRASHKKPRLINGETKTLSSTTATKPKLHECSICGQEFAMGQ 81
F+C+ C R F L H +H T KP C ICG++FA
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTH----------------TGEKP--FACDICGRKFARSD 45
Query: 82 ALGGH 86
H
Sbjct: 46 ERKRH 50
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 18/88 (20%)
Query: 3 LTRSNRAKLPIKKRLASDVFECKTCNRQFPSFQALGGHRASHKKPRLINGETKTLSSTTA 62
+RS+ I+ F+C+ C R F L H +H T
Sbjct: 15 FSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH----------------TG 58
Query: 63 TKPKLHECSICGQEFAMGQALGGHMRRH 90
KP C ICG++FA H + H
Sbjct: 59 EKP--FACDICGRKFARSDERKRHTKIH 84
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 18/69 (26%)
Query: 22 FECKTCNRQFPSFQALGGHRASHKKPRLINGETKTLSSTTATKPKLHECSICGQEFAMGQ 81
F+C+ C R F +L H +H T KP C ICG++FA
Sbjct: 35 FQCRICMRNFSQQASLNAHIRTH----------------TGEKP--FACDICGRKFATLH 76
Query: 82 ALGGHMRRH 90
H + H
Sbjct: 77 TRTRHTKIH 85
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 18/69 (26%)
Query: 22 FECKTCNRQFPSFQALGGHRASHKKPRLINGETKTLSSTTATKPKLHECSICGQEFAMGQ 81
F+C+ C R F L H +H T KP C ICG++FA
Sbjct: 35 FQCRICMRNFSQHTGLNQHIRTH----------------TGEKP--FACDICGRKFATLH 76
Query: 82 ALGGHMRRH 90
H + H
Sbjct: 77 TRDRHTKIH 85
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 18/88 (20%)
Query: 3 LTRSNRAKLPIKKRLASDVFECKTCNRQFPSFQALGGHRASHKKPRLINGETKTLSSTTA 62
+RS+ I+ F+C+ C R F L H +H T
Sbjct: 16 FSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH----------------TG 59
Query: 63 TKPKLHECSICGQEFAMGQALGGHMRRH 90
KP C ICG++FA H + H
Sbjct: 60 EKPFA--CDICGRKFARSDERKRHTKIH 85
>pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 195
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 71 SICGQEFAMGQALGGHMRRHRIAMNESLNSAVIVSQSP 108
+C A+G A G +RR R + +++ ++V+ SP
Sbjct: 82 GVCLGHQAIGYAFGAKIRRARKVFHGKISNIILVNNSP 119
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 18/69 (26%)
Query: 22 FECKTCNRQFPSFQALGGHRASHKKPRLINGETKTLSSTTATKPKLHECSICGQEFAMGQ 81
++C C + F L HR +H T KP ++C CG+ F
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTH----------------TGEKP--YKCDECGKAFIQRS 60
Query: 82 ALGGHMRRH 90
L GH R H
Sbjct: 61 HLIGHHRVH 69
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 68 HECSICGQEFAMGQALGGHMRRH 90
H+C +CG+ F+ L HMR H
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCH 31
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 66 KLHECSICGQEFAMGQALGGHMRRH 90
K + C++CG+ F + L H+R H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVH 35
>pdb|4IJD|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Pr
Domain- Containing Protein 9
pdb|4IJD|B Chain B, Crystal Structure Of Methyltransferase Domain Of Human Pr
Domain- Containing Protein 9
Length = 221
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 55 KTLSSTTATKPKLHECSICGQEFAMGQALGGHMRRHRIAMN 95
K L + KP++H C C F+ + L H+ R+ + N
Sbjct: 181 KELXAGREPKPEIHPCPSCCLAFSSQKFLSQHVERNHSSQN 221
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 18/69 (26%)
Query: 22 FECKTCNRQFPSFQALGGHRASHKKPRLINGETKTLSSTTATKPKLHECSICGQEFAMGQ 81
F+C+ C R F L H +H T KP C ICG++FA
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTH----------------TGEKP--FACDICGRKFARSD 76
Query: 82 ALGGHMRRH 90
H + H
Sbjct: 77 ERKRHTKIH 85
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 18/69 (26%)
Query: 22 FECKTCNRQFPSFQALGGHRASHKKPRLINGETKTLSSTTATKPKLHECSICGQEFAMGQ 81
F+C+ C R F L H +H T KP C ICG++FA
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTH----------------TGEKP--FACDICGRKFARSD 76
Query: 82 ALGGHMRRH 90
H + H
Sbjct: 77 ERKRHTKIH 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,784,843
Number of Sequences: 62578
Number of extensions: 121726
Number of successful extensions: 554
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 434
Number of HSP's gapped (non-prelim): 109
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)