BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031969
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TDU|A Chain A, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDU|B Chain B, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDZ|A Chain A, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
pdb|3TDZ|B Chain B, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
Length = 200
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
Query: 57 RHLEELYNRYKDPY-LDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEF 115
+ LE+LYNRYKDP + I +DGI C+DL +DP I +L+++W +AAT CEFSKQEF
Sbjct: 4 KKLEQLYNRYKDPQDENKIGIDGIQQFCDDLALDPASISVLIIAWKFRAATQCEFSKQEF 63
Query: 116 IGGLQSLGIDSLDKFRERISFMRAELKD 143
+ G+ LG DS++K + +I M ELK+
Sbjct: 64 MDGMTELGCDSIEKLKAQIPKMEQELKE 91
>pdb|4GAO|A Chain A, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|B Chain B, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|D Chain D, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|G Chain G, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
Length = 200
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 59/88 (67%), Gaps = 1/88 (1%)
Query: 57 RHLEELYNRYKDPY-LDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEF 115
+ LE LY RYKDP + I VDGI C+DL +DP I +LV++W +AAT CEFS++EF
Sbjct: 4 KKLERLYGRYKDPQDENKIGVDGIQQFCDDLSLDPASISVLVIAWKFRAATQCEFSRKEF 63
Query: 116 IGGLQSLGIDSLDKFRERISFMRAELKD 143
+ G+ LG DS++K + + + ELKD
Sbjct: 64 LDGMTELGCDSMEKLKALLPRLEQELKD 91
>pdb|3KEV|A Chain A, X-Ray Crystal Structure Of A Dcun1 Domain-Containing
Protein From Galdieria Sulfuraria
Length = 199
Score = 85.5 bits (210), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 63/90 (70%)
Query: 54 TDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQ 113
D + + EL+ YK+P + I +G+ L D+QVDP D+V LV++W +KA++ EFS++
Sbjct: 4 ADKKAILELFQTYKEPLGNYIGAEGLQRLFEDIQVDPSDVVTLVLAWKLKASSTXEFSEK 63
Query: 114 EFIGGLQSLGIDSLDKFRERISFMRAELKD 143
EF+ GL +L +DSL+K + ++S +R E++D
Sbjct: 64 EFVEGLANLQVDSLEKLKRKLSSLRKEIED 93
>pdb|4GBA|A Chain A, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GBA|B Chain B, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
Length = 221
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 56/88 (63%)
Query: 57 RHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFI 116
+ LEEL+ RYKD D IL +G+ CNDL VDP + +L+++W +AATMC+F+++EF
Sbjct: 6 QRLEELFRRYKDEREDAILEEGMERFCNDLCVDPTEFRVLLLAWKFQAATMCKFTRKEFF 65
Query: 117 GGLQSLGIDSLDKFRERISFMRAELKDE 144
G +++ DS+D R + E K E
Sbjct: 66 DGCKAISADSIDGICARFPSLLTEAKQE 93
>pdb|4GEW|A Chain A, Crystal Structure Of Tdp2 From C. Elegans
Length = 362
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 5 SRSNRDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYS 46
S S+ KL +F IT E A L+ DW L+ A DVFY
Sbjct: 42 SMSDEQKLHEFAIITATDEAFAQSILQDVDWDLKKALDVFYG 83
>pdb|4F1I|A Chain A, Crystal Structure Of Semet Tdp2 From Caenorhabditis
Elegans
Length = 362
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 5 SRSNRDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYS 46
S S+ KL +F IT E A L+ DW L+ A DVFY
Sbjct: 42 SXSDEQKLHEFAIITATDEAFAQSILQDVDWDLKKALDVFYG 83
>pdb|1V92|A Chain A, Solution Structure Of The Uba Domain From P47, A Major
Cofactor Of The Aaa Atpase P97
Length = 46
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 4 LSRSNRDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFY 45
++ +D L++FV++TGA E A L+++ W L+ A FY
Sbjct: 1 MAEERQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFY 42
>pdb|2DAL|A Chain A, Solution Structure Of The Novel Identified Uba-Like
Domain In The N-Terminal Of Human Fas Associated Factor
1 Protein
Length = 62
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 12 LQQFVSITGASEKAALQALKASDWHLEGAFDVF 44
+QQF +ITGASE L+A + +LE A +F
Sbjct: 19 IQQFTTITGASESVGKHMLEACNNNLEMAVTMF 51
>pdb|2DZL|A Chain A, Solution Structure Of The Uba Domain In Human Protein
Fam100b
Length = 66
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 12 LQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRH 58
+ QFV G + A Q L+A+ W E A F+ Q ++ ++ H
Sbjct: 21 INQFVLAAGCAADQAKQLLQAAHWQFETALSTFF---QETNIPNSHH 64
>pdb|2LBC|A Chain A, Solution Structure Of Tandem Uba Of Usp13
Length = 126
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 4 LSRSNRDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTD 55
L +++ ++ G A+QAL+A++ +LE A D +S P+ + +D
Sbjct: 73 LDNQPPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEEDSD 124
>pdb|1OKI|A Chain A, Crystal Structure Of Truncated Human Beta-B1-Crystallin
pdb|1OKI|B Chain B, Crystal Structure Of Truncated Human Beta-B1-Crystallin
Length = 210
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 26 ALQALKASDWHLEGAFDVFYSQP 48
+L+ L+ WHLEG+F V ++P
Sbjct: 186 SLRRLRDKQWHLEGSFPVLATEP 208
>pdb|3PV6|A Chain A, Crystal Structure Of Nkp30 Bound To Its Ligand B7-H6
pdb|3PV7|A Chain A, Crystal Structure Of Nkp30 Ligand B7-H6
Length = 248
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 75 LVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQ----EFIGGLQ 120
L D +T+ CN P +I + ++W K+ T F K+ EF G Q
Sbjct: 17 LNDNVTIFCNIFYSQPLNITSMGITWFWKSLT---FDKEVKVFEFFGDHQ 63
>pdb|2Q7X|A Chain A, Crystal Structure Of A Putative Phospho Transferase
(Sp_1565) From Streptococcus Pneumoniae Tigr4 At 2.00 A
Resolution
pdb|2Q7X|B Chain B, Crystal Structure Of A Putative Phospho Transferase
(Sp_1565) From Streptococcus Pneumoniae Tigr4 At 2.00 A
Resolution
Length = 326
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 49 QSKSLTDTRHLEELYNRYKDPYLDMILVD 77
+++ TD+ H+E L+ P++D +LV+
Sbjct: 231 ETEHFTDSDHVEVLHRHLGRPFIDTVLVN 259
>pdb|1CC0|E Chain E, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|F Chain F, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1HH4|D Chain D, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|E Chain E, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 204
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 14/76 (18%)
Query: 23 EKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLE---ELYNRYK-----------D 68
E A Q + + + E V Y P KS+ + + L+ E +YK D
Sbjct: 5 EPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSAD 64
Query: 69 PYLDMILVDGITLLCN 84
P + ++V G+TL+C+
Sbjct: 65 PNVPNVVVTGLTLVCS 80
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 7 SNRDKLQQFVSITGASEKAALQALKASDWH 36
+N+ L Q +SI+ +EK LQ +K W+
Sbjct: 125 ANKHDLPQAMSISEVTEKLGLQTIKNRKWY 154
>pdb|1FST|A Chain A, Crystal Structure Of Truncated Human Rhogdi Triple
Mutant
pdb|1FST|B Chain B, Crystal Structure Of Truncated Human Rhogdi Triple
Mutant
Length = 182
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 14/56 (25%)
Query: 43 VFYSQPQSKSLTDTRHLE---ELYNRYK-----------DPYLDMILVDGITLLCN 84
V Y P KS+ + + L+ E +YK DP + ++V G+TL+C+
Sbjct: 3 VNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVVVTGLTLVCS 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,995,111
Number of Sequences: 62578
Number of extensions: 144887
Number of successful extensions: 448
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 18
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)