BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031970
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 200 bits (508), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 90/111 (81%), Positives = 102/111 (91%)
Query: 5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
GQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP++LVGTKLDL
Sbjct: 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 122
Query: 65 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
R+DK + DHPG VP+TT QGEEL+K IG+ YIECSSKTQQNVKAVFDAA
Sbjct: 123 RDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAA 173
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 197 bits (502), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 89/114 (78%), Positives = 102/114 (89%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP+VLVGTK
Sbjct: 62 DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTK 121
Query: 62 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK + DHPG VP+TT QGEEL+K IGA YIECSSK+Q+NVK VFDAA
Sbjct: 122 LDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAA 175
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 196 bits (499), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 88/114 (77%), Positives = 102/114 (89%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDYNRLRPLSYRGADVF+LAFSL+S+ASYEN+ KKW+PEL+HY+PG+P+VLVGTK
Sbjct: 60 DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTK 119
Query: 62 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK +L DHPG +TTAQGEELRK IGA Y+ECSSKTQQNVKAVFD A
Sbjct: 120 LDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTA 173
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 186 bits (472), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 87/114 (76%), Positives = 102/114 (89%), Gaps = 2/114 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSYRGAD+FVLAFSL+S+ASYENVLKKW+PEL+ ++P VP+VLVGTK
Sbjct: 63 DTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTK 122
Query: 62 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK YLADH + +T+ QGEELRKQIGA+ YIECSSKTQQNVKAVFD A
Sbjct: 123 LDLRDDKGYLADHTNV--ITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTA 174
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 132 bits (331), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTK
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 116
Query: 62 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK + L P+T QG + K+IGA Y+ECS+ TQ+ +K VFD A
Sbjct: 117 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTK
Sbjct: 76 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 135
Query: 62 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK + L P+T QG + K+IGA Y+ECS+ TQ+ +K VFD A
Sbjct: 136 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 191
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTK
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 116
Query: 62 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK + L P+T QG + K+IGA Y+ECS+ TQ+ +K VFD A
Sbjct: 117 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTK
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 116
Query: 62 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK + L P+T QG + K+IGA Y+ECS+ TQ+ +K VFD A
Sbjct: 117 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTK
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 116
Query: 62 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK + L P+T QG + K+IGA Y+ECS+ TQ+ +K VFD A
Sbjct: 117 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTK
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 116
Query: 62 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK + L P+T QG + K+IGA Y+ECS+ TQ+ +K VFD A
Sbjct: 117 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTK
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 116
Query: 62 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK + L P+T QG + K+IGA Y+ECS+ TQ+ +K VFD A
Sbjct: 117 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTK
Sbjct: 84 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 143
Query: 62 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK + L P+T QG + K+IGA Y+ECS+ TQ+ +K VFD A
Sbjct: 144 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 199
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTK
Sbjct: 64 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 123
Query: 62 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK + L P+T QG + K+IGA Y+ECS+ TQ+ +K VFD A
Sbjct: 124 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 179
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTK
Sbjct: 67 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 126
Query: 62 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK + L P+T QG + K+IGA Y+ECS+ TQ+ +K VFD A
Sbjct: 127 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 182
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTK
Sbjct: 84 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 143
Query: 62 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK + L P+T QG + K+IGA Y+ECS+ TQ+ +K VFD A
Sbjct: 144 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 199
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 131 bits (329), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 81/116 (69%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DVF++ FSLVS ASYENV KW PE++H+ P P++LVGTK
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTK 116
Query: 62 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK + L P+T QG L K+I + Y+ECS+ TQ+ +K VFD A
Sbjct: 117 LDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEA 172
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 130 bits (327), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 81/116 (69%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DVF++ FSLVS ASYENV KW PE++H+ P P++LVGTK
Sbjct: 64 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTK 123
Query: 62 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK + L P+T QG L K+I + Y+ECS+ TQ+ +K VFD A
Sbjct: 124 LDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEA 179
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 130 bits (327), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 81/116 (69%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DVF++ FSLVS ASYENV KW PE++H+ P P++LVGTK
Sbjct: 63 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTK 122
Query: 62 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK + L P+T QG L K+I + Y+ECS+ TQ+ +K VFD A
Sbjct: 123 LDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEA 178
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 129 bits (324), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 62/116 (53%), Positives = 81/116 (69%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ G EDY+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTK
Sbjct: 57 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 116
Query: 62 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK + L P+T QG + K+IGA Y+ECS+ TQ+ +K VFD A
Sbjct: 117 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 129 bits (323), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 62/116 (53%), Positives = 81/116 (69%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ G EDY+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTK
Sbjct: 57 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 116
Query: 62 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK + L P+T QG + K+IGA Y+ECS+ TQ+ +K VFD A
Sbjct: 117 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 128 bits (322), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 62/116 (53%), Positives = 81/116 (69%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ G EDY+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTK
Sbjct: 60 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 119
Query: 62 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK + L P+T QG + K+IGA Y+ECS+ TQ+ +K VFD A
Sbjct: 120 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 175
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/116 (53%), Positives = 81/116 (69%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ G EDY+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTK
Sbjct: 84 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 143
Query: 62 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK + L P+T QG + K+IGA Y+ECS+ TQ+ +K VFD A
Sbjct: 144 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 199
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/116 (53%), Positives = 81/116 (69%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DV ++ FSLVS AS+ENV KW PE++H+ P P++LVGTK
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 116
Query: 62 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK + L P+T QG + K+IGA Y+ECS+ TQ+ +K VFD A
Sbjct: 117 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/116 (53%), Positives = 81/116 (69%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DV ++ FSLVS AS+ENV KW PE++H+ P P++LVGTK
Sbjct: 61 DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 120
Query: 62 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK + L P+T QG + K+IGA Y+ECS+ TQ+ +K VFD A
Sbjct: 121 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 176
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/116 (53%), Positives = 81/116 (69%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DV ++ FSLVS AS+ENV KW PE++H+ P P++LVGTK
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 116
Query: 62 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK + L P+T QG + K+IGA Y+ECS+ TQ+ +K VFD A
Sbjct: 117 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 128 bits (321), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/116 (53%), Positives = 81/116 (69%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DV ++ FSLVS AS+ENV KW PE++H+ P P++LVGTK
Sbjct: 59 DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 118
Query: 62 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK + L P+T QG + K+IGA Y+ECS+ TQ+ +K VFD A
Sbjct: 119 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 174
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 127 bits (319), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/116 (52%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTK
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTK 116
Query: 62 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK + L P+T QG + ++IG+ Y+ECS+ TQ+ +K VFD A
Sbjct: 117 LDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEA 172
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/116 (52%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTK
Sbjct: 58 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTK 117
Query: 62 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK + L P+T QG + ++IG+ Y+ECS+ TQ+ +K VFD A
Sbjct: 118 LDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEA 173
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/116 (52%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTK
Sbjct: 58 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTK 117
Query: 62 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK + L P+T QG + ++IG+ Y+ECS+ TQ+ +K VFD A
Sbjct: 118 LDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEA 173
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 126 bits (316), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 85/116 (73%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DVF++ FS+V+ AS++NV ++W+PEL+ Y+P VP +L+GT+
Sbjct: 72 DTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQ 131
Query: 62 LDLREDKHYLADHPGL--VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
+DLR+D LA + P+ QG++L K+IGA Y+ECS+ TQ+ +K VFD A
Sbjct: 132 IDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEA 187
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 125 bits (313), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/116 (51%), Positives = 80/116 (68%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ G EDY+RLRPLSY DVF++ FSLVS AS+ +V KW PE++H+ P P++LVGTK
Sbjct: 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTK 268
Query: 62 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK + L P+T QG + K+IGA Y+ECS+ TQ+ +K VFD A
Sbjct: 269 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 324
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 125 bits (313), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/116 (51%), Positives = 80/116 (68%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ G EDY+RLRPLSY DVF++ FSLVS AS+ +V KW PE++H+ P P++LVGTK
Sbjct: 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTK 268
Query: 62 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK + L P+T QG + K+IGA Y+ECS+ TQ+ +K VFD A
Sbjct: 269 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 324
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 124 bits (312), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/116 (51%), Positives = 80/116 (68%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ G EDY+RLRPLSY DVF++ FSLVS AS+ +V KW PE++H+ P P++LVGTK
Sbjct: 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTK 268
Query: 62 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
LDLR+DK + L P+T QG + K+IGA Y+ECS+ TQ+ +K VFD A
Sbjct: 269 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 324
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 123 bits (309), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 85/135 (62%), Gaps = 21/135 (15%)
Query: 2 NVIGQEDYNRLRPLSY--------------RG-----ADVFVLAFSLVSRASYENVLKKW 42
+ GQEDY+RLRPLSY RG ADVF++ FSLVS AS+ENV KW
Sbjct: 59 DTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKW 118
Query: 43 IPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIEC 100
PE++H+ P P++LVGTKLDLR+DK + L P+T QG + K+IGA Y+EC
Sbjct: 119 YPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 178
Query: 101 SSKTQQNVKAVFDAA 115
S+ TQ+ +K VFD A
Sbjct: 179 SALTQRGLKTVFDEA 193
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 115 bits (288), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
+ GQEDY+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 61 KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
++DLR+D + P+T E+L + + A Y+ECS+ TQ+ +K VFD A
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 115 bits (288), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
+ GQEDY+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT
Sbjct: 57 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 116
Query: 61 KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
++DLR+D + P+T E+L + + A Y+ECS+ TQ+ +K VFD A
Sbjct: 117 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 173
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 115 bits (288), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
+ GQEDY+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 61 KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
++DLR+D + P+T E+L + + A Y+ECS+ TQ+ +K VFD A
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 115 bits (288), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
+ GQEDY+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 61 KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
++DLR+D + P+T E+L + + A Y+ECS+ TQ+ +K VFD A
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
+ GQEDY+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT
Sbjct: 58 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 117
Query: 61 KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
++DLR+D + P+T E+L + + A Y+ECS+ TQ+ +K VFD A
Sbjct: 118 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 174
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
+ GQEDY+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 61 KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
++DLR+D + P+T E+L + + A Y+ECS+ TQ+ +K VFD A
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
+ GQEDY+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 61 KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
++DLR+D + P+T E+L + + A Y+ECS+ TQ+ +K VFD A
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
+ GQEDY+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT
Sbjct: 63 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 122
Query: 61 KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
++DLR+D + P+T E+L + + A Y+ECS+ TQ+ +K VFD A
Sbjct: 123 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 179
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
+ GQEDY+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 61 KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
++DLR+D + P+T E+L + + A Y+ECS+ TQ+ +K VFD A
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
+ GQEDY+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 61 KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
++DLR+D + P+T E+L + + A Y+ECS+ TQ+ +K VFD A
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
+ GQEDY+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT
Sbjct: 66 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 125
Query: 61 KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
++DLR+D + P+T E+L + + A Y+ECS+ TQ+ +K VFD A
Sbjct: 126 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 182
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
+ GQEDY+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 61 KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
++DLR+D + P+T E+L + + A Y+ECS+ TQ+ +K VFD A
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
+ GQEDY+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT
Sbjct: 59 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 118
Query: 61 KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
++DLR+D + P+T E+L + + A Y+ECS+ TQ+ +K VFD A
Sbjct: 119 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 175
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
+ GQEDY+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT
Sbjct: 63 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 122
Query: 61 KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
++DLR+D + P+T E+L + + A Y+ECS+ TQ+ +K VFD A
Sbjct: 123 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 179
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
+ GQEDY+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT
Sbjct: 59 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 118
Query: 61 KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
++DLR+D + P+T E+L + + A Y+ECS+ TQ+ +K VFD A
Sbjct: 119 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 175
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
+ GQEDY+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT
Sbjct: 58 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 117
Query: 61 KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
++DLR+D + P+T E+L + + A Y+ECS+ TQ+ +K VFD A
Sbjct: 118 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 174
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
+ GQEDY+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 61 KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
++DLR+D + P+T E+L + + A Y+ECS+ TQ+ +K VFD A
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 78/116 (67%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT+
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 116
Query: 62 LDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
+DLR+D + P+T E+L + + A Y+ECS+ TQ+ +K VFD A
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
+ GQEDY+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 61 KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
++DLR+D + P+T E+L + + A Y+ECS+ TQ+ +K VFD A
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEA 172
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
+ GQEDY+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT
Sbjct: 60 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 119
Query: 61 KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
++DLR+D + P+T E+L + + A Y+ECS+ TQ+ +K VFD A
Sbjct: 120 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 176
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
+ GQEDY+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 61 KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
++DLR+D + P+T E+L + + A Y+ECS+ TQ+ +K VFD A
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEA 172
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 59 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 118
Query: 62 LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
DLR D+H + + PV +G ++ +IGA Y+ECS+KT+ V+ VF+ A
Sbjct: 119 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 174
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 59 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 118
Query: 62 LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
DLR D+H + + PV +G ++ +IGA Y+ECS+KT+ V+ VF+ A
Sbjct: 119 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 174
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 79/116 (68%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 59 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 118
Query: 62 LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
DLR+D+H + + PV + +G ++ +I A Y+ECS+KT++ V+ VF+ A
Sbjct: 119 KDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMA 174
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+R RPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 59 DTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 118
Query: 62 LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
DLR D+H + + PV A+G ++ +IGA Y+ECS+KT+ V+ VF+ A
Sbjct: 119 KDLRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 174
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 59 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 118
Query: 62 LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
DLR D+H + + PV +G ++ +IGA Y+ECS+KT+ V+ VF+ A
Sbjct: 119 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 174
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 62 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 121
Query: 62 LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
DLR D+H + + PV +G ++ +IGA Y+ECS+KT+ V+ VF+ A
Sbjct: 122 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 177
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 61 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 120
Query: 62 LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
DLR D+H + + PV +G ++ +IGA Y+ECS+KT+ V+ VF+ A
Sbjct: 121 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 176
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 57 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 116
Query: 62 LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
DLR D+H + + PV +G ++ +IGA Y+ECS+KT+ V+ VF+ A
Sbjct: 117 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 172
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 59 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 118
Query: 62 LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
DLR D+H + + PV +G ++ +IGA Y+ECS+KT+ V+ VF+ A
Sbjct: 119 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 174
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 57 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 116
Query: 62 LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
DLR D+H + + PV +G ++ +IGA Y+ECS+KT+ V+ VF+ A
Sbjct: 117 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 172
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 61 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 120
Query: 62 LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
DLR D+H + + PV +G ++ +IGA Y+ECS+KT+ V+ VF+ A
Sbjct: 121 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 176
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 61 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 120
Query: 62 LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
DLR D+H + + PV +G ++ +IGA Y+ECS+KT+ V+ VF+ A
Sbjct: 121 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 176
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 60 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 119
Query: 62 LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
DLR D+H + + PV +G ++ +IGA Y+ECS+KT+ V+ VF+ A
Sbjct: 120 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 175
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 60 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 119
Query: 62 LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
DLR D+H + + PV +G ++ +IGA Y+ECS+KT+ V+ VF+ A
Sbjct: 120 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 175
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 63 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 122
Query: 62 LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
DLR D+H + + PV +G ++ +IGA Y+ECS+KT+ V+ VF+ A
Sbjct: 123 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 178
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 114 bits (284), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 79/116 (68%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 79 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 138
Query: 62 LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
DLR+D+H + + PV + +G ++ +I A Y+ECS+KT++ V+ VF+ A
Sbjct: 139 KDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMA 194
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 79/116 (68%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 79 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNK 138
Query: 62 LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
DLR+D+H + + PV + +G ++ +I A Y+ECS+KT++ V+ VF+ A
Sbjct: 139 KDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMA 194
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 113 bits (282), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 80/116 (68%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQ+++++LRPL Y D+F+L FS+VS +S++NV +KW+PE++ + P P++LVGT+
Sbjct: 74 DTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQ 133
Query: 62 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
DLRED L D PV + L ++I A+ YIECS+ TQ+N+K VFDAA
Sbjct: 134 SDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAA 189
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 112 bits (280), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 77/117 (65%), Gaps = 2/117 (1%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
+ G EDY+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT
Sbjct: 60 FDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 119
Query: 61 KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
++DLR+D + P+T E+L + + A Y+ECS+ TQ+ +K VFD A
Sbjct: 120 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 176
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 112 bits (280), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 77/117 (65%), Gaps = 2/117 (1%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
+ G EDY+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT
Sbjct: 56 FDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 61 KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
++DLR+D + P+T E+L + + A Y+ECS+ TQ+ +K VFD A
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 76/116 (65%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ G EDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 62 DTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 121
Query: 62 LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
DLR D+H + + PV +G ++ +IGA Y+ECS+KT+ V+ VF+ A
Sbjct: 122 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 177
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY ++V ++ FS+ S ENV +KWI E+ H+ GVP++LVG K
Sbjct: 64 DTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCK 123
Query: 62 LDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
+DLR D + G PVT+ +G+ + QIGA+ Y ECS+KT V+ VF+AA
Sbjct: 124 VDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAA 179
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 110 bits (275), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 76/116 (65%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW+PE++H+ P VP++LV K
Sbjct: 79 DTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANK 138
Query: 62 LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
DLR D+H + + PV T G + +I A Y+ECS+KT++ V+ VF+ A
Sbjct: 139 KDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETA 194
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 74/116 (63%), Gaps = 2/116 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQ+DY+RLRPL Y A V +L F + S S++N+ +W PE+ H+ VP+++VG K
Sbjct: 88 DTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCK 147
Query: 62 LDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
DLR+DK + GL PVT +G+E+ + +GA Y+ECS++ NV AVF A
Sbjct: 148 TDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEA 203
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 92.4 bits (228), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 71/114 (62%), Gaps = 8/114 (7%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQE+Y+RLRPLSY +DV +L F++ +R S++N+ KW PE++HY VLVG K
Sbjct: 76 DTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLK 135
Query: 62 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
+DLR+D G VT +G++L +++G YIE SS + + VF+ +
Sbjct: 136 VDLRKD--------GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKS 181
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 71/114 (62%), Gaps = 8/114 (7%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQE+Y+RLRPLSY +DV +L F++ +R S++N+ KW PE++HY VLVG K
Sbjct: 77 DTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLK 136
Query: 62 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
+DLR+D G VT +G++L +++G YIE SS + + VF+ +
Sbjct: 137 VDLRKD--------GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKS 182
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
G Y+ +RPLSY +D ++ F + + ++VLKKW E+Q + P ++LVG K DL
Sbjct: 80 GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 139
Query: 65 REDKHYLADHPG--LVPVTTAQGEELRKQIGASYYIECSS-KTQQNVKAVFDAA 115
R D L + PV+ QG + KQIGA+ YIECS+ +++ +V+ +F A
Sbjct: 140 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 193
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
G Y+ +RPLSY +D ++ F + + ++VLKKW E+Q + P ++LVG K DL
Sbjct: 64 GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 123
Query: 65 REDKHYLADHPG--LVPVTTAQGEELRKQIGASYYIECSS-KTQQNVKAVFDAA 115
R D L + PV+ QG + KQIGA+ YIECS+ +++ +V+ +F A
Sbjct: 124 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 177
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 82.4 bits (202), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
G Y+ +RPLSY +D ++ F + + ++VLKKW E+Q + P ++LVG K DL
Sbjct: 85 GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 144
Query: 65 REDKHYLADHPG--LVPVTTAQGEELRKQIGASYYIECSS-KTQQNVKAVFDAA 115
R D L + PV+ QG + KQIGA+ YIECS+ +++ +V+ +F A
Sbjct: 145 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 198
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ G Y+ +RPL Y +D +L F + + ++ LKKW E+ Y P V+L+G K
Sbjct: 81 DTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCK 140
Query: 62 LDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKT-QQNVKAVFDAA 115
DLR D L + H P++ QG + KQ+GA Y+E S+ T ++++ ++F A
Sbjct: 141 TDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 197
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ G Y+ +RPL Y +D +L F + + ++ LKKW E+ Y P V+L+G K
Sbjct: 64 DTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCK 123
Query: 62 LDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKT-QQNVKAVFDAA 115
DLR D L + H P++ QG + KQ+GA Y+E S+ T ++++ ++F A
Sbjct: 124 TDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 180
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ G Y+ +RPL Y +D +L F + + ++ LKKW E+ Y P V+L+G K
Sbjct: 65 DTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCK 124
Query: 62 LDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKT-QQNVKAVFDAA 115
DLR D L + H P++ QG + KQ+GA Y+E S+ T ++++ ++F A
Sbjct: 125 TDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 181
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
+ GQE Y+ L P+ YRGA ++ F + ++AS+E KKW+ ELQ +P + + L G
Sbjct: 67 DTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGN 125
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL + + TA+ + Q +++E S+KT NVK +F
Sbjct: 126 KSDLLDARK-----------VTAEDAQTYAQENGLFFMETSAKTATNVKEIF 166
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 17/119 (14%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVV 56
+ GQE + LR YRGAD +L FS+ R S+EN L W E +Y+ P V
Sbjct: 62 DTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFEN-LGNWQKEFIYYADVKDPEHFPFV 120
Query: 57 LVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
++G K+D +ED+ VTT + + + G Y+E S+K NV F+ A
Sbjct: 121 VLGNKVD-KEDRQ----------VTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEA 168
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVV 56
+ GQE + LR YRG+D +L FS+ S++N L W E +Y+ P V
Sbjct: 66 DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFV 124
Query: 57 LVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
++G K D++E + V+T + + K G Y E S+K NV A F+ A
Sbjct: 125 ILGNKTDIKERQ-----------VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEA 172
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
+ GQE +N + YR A +L + + + ++++ L KW+ + Y S ++LVG
Sbjct: 81 DTAGQERFNSITSAYYRSAKGIILVYDITKKETFDD-LPKWMKMIDKYASEDAELLLVGN 139
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
KLD D+ +T QGE+ +QI + E S+K NV +F
Sbjct: 140 KLDCETDRE----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVV 56
+ GQE + LR YRG+D +L FS+ S++N L W E +Y+ P V
Sbjct: 62 DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFV 120
Query: 57 LVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
++G K+D+ E + V+T + + + G Y E S+K NV A F+ A
Sbjct: 121 ILGNKIDISERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 168
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVV 56
+ GQE + LR YRG+D +L FS+ S++N L W E +Y+ P V
Sbjct: 64 DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFV 122
Query: 57 LVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
++G K+D+ E + V+T + + + G Y E S+K NV A F+ A
Sbjct: 123 ILGNKIDISERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 170
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 13/113 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGT 60
+ GQE Y + YRGA F+L + + + S+ N ++ W +++ YS V+LVG
Sbjct: 78 DTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGN 136
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 113
K D+ E++ +VP T +G+ L +Q+G ++ E S+K +V+ F+
Sbjct: 137 KCDMEEER--------VVP--TEKGQLLAEQLGFDFF-EASAKENISVRQAFE 178
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGT 60
+ GQE + + YRGA ++ + + R S++NV K+WI E+ Y+ V +LVG
Sbjct: 64 DTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNV-KQWIQEIDRYAMENVNKLLVGN 122
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL + VT+ +G EL G +IE S+K NV+ F
Sbjct: 123 KCDLVSKR----------VVTSDEGRELADSHGIK-FIETSAKNAYNVEQAF 163
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 14/114 (12%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLK--KWIPELQHYSPGVPVVLV 58
++ GQE++ +R R + F+L FS+ R S+E + K + I ++ P++L+
Sbjct: 58 LDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDE-FPMILI 116
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL DH VT +G++L +Q+ + Y+E S+K + NV F
Sbjct: 117 GNKADL--------DHQR--QVTQEEGQQLARQLKVT-YMEASAKIRMNVDQAF 159
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 13/113 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGT 60
+ GQE Y + YRGA F+L + + + S+ N ++ W +++ YS V+LVG
Sbjct: 60 DTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGN 118
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 113
K D+ +++ V++ +G +L +G ++ E S+K NVK F+
Sbjct: 119 KCDMEDER----------VVSSERGRQLADHLGFEFF-EASAKDNINVKQTFE 160
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 29/122 (23%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
+ GQE Y+ L P+ YRGA ++ + + + S+ K W+ ELQ SP + + L G
Sbjct: 62 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGN 120
Query: 61 KLDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL +E + Y D+ L ++E S+KT NV +F
Sbjct: 121 KADLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIF 161
Query: 113 DA 114
A
Sbjct: 162 MA 163
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
+ GQE Y R+ YRGA +L + + +YENV ++W+ EL+ H + ++LVG
Sbjct: 60 DTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGN 118
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DLR H VP A+ + + +IE S+ NV+ F
Sbjct: 119 KSDLR--------HLRAVPTDEARAFAEKNNLS---FIETSALDSTNVEEAF 159
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 29/122 (23%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
+ GQE Y+ L P+ YRGA ++ + + + S+ K W+ ELQ SP + + L G
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGN 119
Query: 61 KLDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL +E + Y D+ L ++E S+KT NV +F
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIF 160
Query: 113 DA 114
A
Sbjct: 161 MA 162
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 29/122 (23%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
+ GQE Y+ L P+ YRGA ++ + + + S+ K W+ ELQ SP + + L G
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGN 119
Query: 61 KLDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL +E + Y D+ L ++E S+KT NV +F
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIF 160
Query: 113 DA 114
A
Sbjct: 161 MA 162
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 29/122 (23%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
+ GQE Y+ L P+ YRGA ++ + + + S+ K W+ ELQ SP + + L G
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGN 119
Query: 61 KLDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL +E + Y D+ L ++E S+KT NV +F
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIF 160
Query: 113 DA 114
A
Sbjct: 161 MA 162
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 29/122 (23%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
+ GQE Y+ L P+ YRGA ++ + + + S+ K W+ ELQ SP + + L G
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGN 119
Query: 61 KLDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL +E + Y D+ L ++E S+KT NV +F
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIF 160
Query: 113 DA 114
A
Sbjct: 161 MA 162
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 29/122 (23%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
+ GQE Y+ L P+ YRGA ++ + + + S+ K W+ ELQ SP + + L G
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGN 119
Query: 61 KLDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL +E + Y D+ L ++E S+KT NV +F
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIF 160
Query: 113 DA 114
A
Sbjct: 161 MA 162
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 29/122 (23%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
+ GQE Y+ L P+ YRGA ++ + + + S+ K W+ ELQ SP + + L G
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGN 119
Query: 61 KLDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL +E + Y D+ L ++E S+KT NV +F
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIF 160
Query: 113 DA 114
A
Sbjct: 161 MA 162
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
+ GQE Y + YRGA +L + + +YENV ++W+ EL+ H + ++LVG
Sbjct: 75 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGN 133
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DLR H VP T + ++ G S +IE S+ NV+A F
Sbjct: 134 KSDLR--------HLRAVP--TDEARAFAEKNGLS-FIETSALDSTNVEAAF 174
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
+ GQE Y + YRGA +L + + +YENV ++W+ EL+ H + ++LVG
Sbjct: 84 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGN 142
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DLR H VP T + ++ G S +IE S+ NV+A F
Sbjct: 143 KSDLR--------HLRAVP--TDEARAFAEKNGLS-FIETSALDSTNVEAAF 183
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGT 60
+ GQE ++ L P+ YRG+ V+ + + + S+ LKKW+ EL+ + P + + + G
Sbjct: 78 DTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSF-YTLKKWVKELKEHGPENIVMAIAGN 136
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL + + VP+ A+ E + IGA +E S+K N++ +F
Sbjct: 137 KCDLSDIRE--------VPLKDAK--EYAESIGA-IVVETSAKNAINIEELF 177
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 27/119 (22%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
+ GQE Y+ L P+ YRGA ++ + + ++ ++ K W+ ELQ SP + + L G
Sbjct: 63 DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARA-KTWVKELQRQASPSIVIALAGN 121
Query: 61 KLDLR-------EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL E+ AD L+ ++E S+KT NV +F
Sbjct: 122 KADLANKRMVEYEEAQAYADDNSLL------------------FMETSAKTAMNVNDLF 162
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 29/122 (23%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
+ GQE Y+ L P+ YRGA ++ + + + ++ K W+ ELQ SP + + L G
Sbjct: 60 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQRQASPNIVIALAGN 118
Query: 61 KLDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL +E + Y D+ L ++E S+KT NV +F
Sbjct: 119 KADLASKRAVEFQEAQAYADDNSLL-------------------FMETSAKTAMNVNEIF 159
Query: 113 DA 114
A
Sbjct: 160 MA 161
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 29/122 (23%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
+ GQE Y+ L P+ YRGA ++ + + + ++ K W+ ELQ SP + + L G
Sbjct: 58 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQRQASPNIVIALAGN 116
Query: 61 KLDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL +E + Y D+ L ++E S+KT NV +F
Sbjct: 117 KADLASKRAVEFQEAQAYADDNSLL-------------------FMETSAKTAMNVNEIF 157
Query: 113 DA 114
A
Sbjct: 158 MA 159
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 13/113 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGT 60
+ GQE Y + YRGA F+L + + ++ S+ V + W +++ YS V+LVG
Sbjct: 77 DTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGN 135
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 113
K DL +++ +VP G L +G ++ E S+K NVK VF+
Sbjct: 136 KCDLEDER--------VVP--AEDGRRLADDLGFEFF-EASAKENINVKQVFE 177
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 29/122 (23%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
+ GQE Y+ L P YRGA ++ + + + S+ K W+ ELQ SP + + L G
Sbjct: 62 DTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGN 120
Query: 61 KLDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL +E + Y D+ L + E S+KT NV +F
Sbjct: 121 KADLANKRAVDFQEAQSYADDNSLL-------------------FXETSAKTSXNVNEIF 161
Query: 113 DA 114
A
Sbjct: 162 XA 163
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
+ GQE + + YR A+ +L + + S+ L +W+ E++ Y S V VLVG
Sbjct: 81 DTAGQERFRSITQSYYRSANALILTYDITCEESF-RCLPEWLREIEQYASNKVITVLVGN 139
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K+DL E + V+ + EE + YY+E S+K NV+ +F
Sbjct: 140 KIDLAERRE----------VSQQRAEEF-SEAQDMYYLETSAKESDNVEKLF 180
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGVPVVLVG 59
+ GQE + L +R A F+L F L S+ S+ NV + W+ +LQ Y +VL+G
Sbjct: 90 DTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIG 148
Query: 60 TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV-KAV 111
K DL + + V Q EL + G Y+ E S+ T QNV KAV
Sbjct: 149 NKADLPDQRE----------VNERQARELADKYGIPYF-ETSAATGQNVEKAV 190
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLD 63
GQE + + YRGA +L + + ++ N+ K+W + +H + ++LVG K D
Sbjct: 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSD 119
Query: 64 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
+ VT QGE L K++G +IE S+K NV +F
Sbjct: 120 METR-----------VVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 156
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 13/114 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGT 60
+ GQE + + YR A +L + + ++AS++N+ + W+ E+ Y+ V ++L+G
Sbjct: 66 DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGN 124
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 114
K+D ++ V GE+L K+ G ++E S+KT NV F A
Sbjct: 125 KVDSAHER----------VVKREDGEKLAKEYGLP-FMETSAKTGLNVDLAFTA 167
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLD 63
GQE + + YRGA +L + + ++ N+ K+W + +H + ++LVG K D
Sbjct: 78 GQERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSD 136
Query: 64 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
+ VT QGE L K++G +IE S+K NV +F
Sbjct: 137 METR-----------VVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 173
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
+ G E Y + YRGA +L + + +YENV ++W+ EL+ H + ++LVG
Sbjct: 63 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGN 121
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DLR H VP T + ++ G S +IE S+ NV+A F
Sbjct: 122 KSDLR--------HLRAVP--TDEARAFAEKNGLS-FIETSALDSTNVEAAF 162
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 58/112 (51%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
+ GQE ++ L P+ YR ++ +L + + S++ V K W+ EL+ + + +VG
Sbjct: 61 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGN 119
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K+DL +++H V+ + E + +GA +Y S+K + ++ +F
Sbjct: 120 KIDLEKERH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELF 160
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 58/112 (51%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
+ GQE ++ L P+ YR ++ +L + + S++ V K W+ EL+ + + +VG
Sbjct: 61 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGN 119
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K+DL +++H V+ + E + +GA +Y S+K + ++ +F
Sbjct: 120 KIDLEKERH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELF 160
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 58/112 (51%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
+ GQE ++ L P+ YR ++ +L + + S++ V K W+ EL+ + + +VG
Sbjct: 75 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGN 133
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K+DL +++H V+ + E + +GA +Y S+K + ++ +F
Sbjct: 134 KIDLEKERH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELF 174
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 62 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 120
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 121 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 162
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 63 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 121
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 122 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 163
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLD 63
GQE + + YRGA +L + + ++ N+ K+W + +H + ++LVG K D
Sbjct: 65 GQERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSD 123
Query: 64 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
+ VT QGE L K++G +IE S+K NV +F
Sbjct: 124 METR-----------VVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 160
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 61 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 119
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 120 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 161
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 61 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 119
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 120 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 161
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 14/109 (12%)
Query: 5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLD 63
GQE + + YRGA +L + + ++ N+ K+W + +H + ++LVG K D
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSD 119
Query: 64 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
VT QGE L K++G +IE S+K NV +F
Sbjct: 120 XETR-----------VVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 156
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
+ GQE + + YRGA ++ + + + SY NV K+W+ E+ Y S V +LVG
Sbjct: 64 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGN 122
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL K +V TTA+ E +G ++E S+K NV+ F
Sbjct: 123 KSDLTTKK--------VVDNTTAK--EFADSLGIP-FLETSAKNATNVEQAF 163
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
+ G E Y + YRGA +L + + +YENV ++W+ EL+ H + ++LVG
Sbjct: 84 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGN 142
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DLR H VP T + ++ G S +IE S+ NV+A F
Sbjct: 143 KSDLR--------HLRAVP--TDEARAFAEKNGLS-FIETSALDSTNVEAAF 183
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKSDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 13/113 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGT 60
+ G E Y + YRGA F+L + + + S+ N ++ W +++ YS V+LVG
Sbjct: 63 DTAGLERYRTITTAYYRGAXGFILXYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGN 121
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 113
K D +++ V++ +G +L +G ++ E S+K NVK F+
Sbjct: 122 KCDXEDER----------VVSSERGRQLADHLGFEFF-EASAKDNINVKQTFE 163
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 13/114 (11%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ G EDY +R +R + F+L FS+ S+ ++ I ++ +P+++V
Sbjct: 56 LDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVV 115
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL E + VPV A+ + + Y+E S+KT+ NV VF
Sbjct: 116 GNKSDLEERRQ--------VPVEEARS---KAEEWGVQYVETSAKTRANVDKVF 158
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
+ GQE + + YRGA ++ + + + SY NV K+W+ E+ Y S V +LVG
Sbjct: 64 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGN 122
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL K +V TTA+ E +G ++E S+K NV+ F
Sbjct: 123 KSDLTTKK--------VVDNTTAK--EFADSLGIP-FLETSAKNATNVEQAF 163
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKSDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
+ G E Y + YRGA +L + + +YENV ++W+ EL+ H + + LVG
Sbjct: 66 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGN 124
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DLR H VP T + ++ G S +IE S+ NV+A F
Sbjct: 125 KSDLR--------HLRAVP--TDEARAFAEKNGLS-FIETSALDSTNVEAAF 165
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 13/114 (11%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ G EDY +R +R + F+L FS+ S+ ++ I ++ +P+++V
Sbjct: 60 LDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVV 119
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL E + VPV A+ + + Y+E S+KT+ NV VF
Sbjct: 120 GNKSDLEERRQ--------VPVEEARS---KAEEWGVQYVETSAKTRANVDKVF 162
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE--NVLKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+ N+ ++ I ++ S VP+VLV
Sbjct: 74 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLV 132
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL P V T Q EL K G +IE S+KT+Q V+ F
Sbjct: 133 GNKCDL----------PTRT-VDTKQAHELAKSYGIP-FIETSAKTRQGVEDAF 174
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 14/109 (12%)
Query: 5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLD 63
GQE + + YRGA +L + + ++ N+ K+W + +H + ++LVG K D
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSD 119
Query: 64 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
VT QGE L K++G +IE S+K NV +F
Sbjct: 120 XETR-----------VVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 156
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
+ G E Y + YRGA +L + + +YENV ++W+ EL+ H + + LVG
Sbjct: 60 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGN 118
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DLR H VP T + ++ G S +IE S+ NV+A F
Sbjct: 119 KSDLR--------HLRAVP--TDEARAFAEKNGLS-FIETSALDSTNVEAAF 159
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 60/114 (52%), Gaps = 13/114 (11%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ G E + +R L + F L +S+ +++++ ++ L++ I ++ + VP++LV
Sbjct: 56 LDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL +++ V QG+ L +Q ++E S+K++ NV +F
Sbjct: 115 GNKCDLEDER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 60/114 (52%), Gaps = 13/114 (11%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ G E + +R L + F L +S+ +++++ ++ L++ I ++ + VP++LV
Sbjct: 58 LDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILV 116
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL +++ V QG+ L +Q ++E S+K++ NV +F
Sbjct: 117 GNKCDLEDER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 57 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLV 115
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL P V T Q ++L + G +IE S+KT+Q V F
Sbjct: 116 GNKCDL----------PSRT-VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 157
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 15/117 (12%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE-LQHY---SPGV-PVV 56
+ GQE + L YRGAD VL + + + +S+EN+ K W E L H SP P V
Sbjct: 64 DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFV 122
Query: 57 LVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 113
++G K+D E K +++ +EL K +G S+K NV F+
Sbjct: 123 ILGNKIDAEESKKIVSEKS---------AQELAKSLGDIPLFLTSAKNAINVDTAFE 170
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 57 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLV 115
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL P V T Q ++L + G +IE S+KT+Q V F
Sbjct: 116 GNKSDL----------PSRT-VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 157
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 57 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLV 115
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL P V T Q ++L + G +IE S+KT+Q V F
Sbjct: 116 GNKSDL----------PSRT-VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 157
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G + DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNRCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 57 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLV 115
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL P V T Q ++L + G +IE S+KT+Q V F
Sbjct: 116 GNKSDL----------PSRT-VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 157
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 60/114 (52%), Gaps = 13/114 (11%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ G E + +R L + F L +S+ +++++ ++ L++ I ++ + VP++LV
Sbjct: 56 LDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL +++ V QG+ L +Q ++E S+K++ NV +F
Sbjct: 115 GNKCDLEDER----------VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
+ GQE + + YRGA ++ + + + S+ NV K+W+ E+ Y S V +LVG
Sbjct: 88 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGN 146
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL K +V TTA+ E +G ++E S+K NV+ F
Sbjct: 147 KCDLTTKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 187
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
+ GQE + + YRGA ++ + + + S+ NV K+W+ E+ Y S V +LVG
Sbjct: 71 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGN 129
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL K +V TTA+ E +G ++E S+K NV+ F
Sbjct: 130 KCDLTTKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 170
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
+ GQE + + YRGA ++ + + + S+ NV K+W+ E+ Y S V +LVG
Sbjct: 54 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGN 112
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL K +V TTA+ E +G ++E S+K NV+ F
Sbjct: 113 KCDLTTKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 153
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
+ GQE + + YRGA ++ + + + S+ NV K+W+ E+ Y S V +LVG
Sbjct: 71 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGN 129
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL K +V TTA+ E +G ++E S+K NV+ F
Sbjct: 130 KCDLTTKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 170
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
+ GQE + + YRGA ++ + + + S+ NV K+W+ E+ Y S V +LVG
Sbjct: 80 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGN 138
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL K +V TTA+ E +G ++E S+K NV+ F
Sbjct: 139 KCDLTTKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 179
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 60/114 (52%), Gaps = 13/114 (11%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ G E + +R L + F L +S+ +++++ ++ L++ I ++ + VP++LV
Sbjct: 56 LDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL +++ V QG+ L +Q ++E S+K++ NV +F
Sbjct: 115 GNKCDLEDER----------VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
+ GQE + + YRGA ++ + + + S+ NV K+W+ E+ Y S V +LVG
Sbjct: 61 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGN 119
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL K +V TTA+ E +G ++E S+K NV+ F
Sbjct: 120 KCDLTTKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 160
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
+ GQE + + YRGA ++ + + + S+ NV K+W+ E+ Y S V +LVG
Sbjct: 61 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGN 119
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL K +V TTA+ E +G ++E S+K NV+ F
Sbjct: 120 KCDLTTKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 160
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKCDL-----------AGRTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ G+E+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
+ GQE + + YRGA ++ + + + S+ NV K+W+ E+ Y S V +LVG
Sbjct: 63 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGI 121
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL K +V TTA+ E +G ++E S+K NV+ F
Sbjct: 122 KCDLTTKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 162
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ G E+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 16/115 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQED + R R + FVL + + R S+E V LK + E++ V ++LV
Sbjct: 81 LDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILV 138
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT-QQNVKAVF 112
G K DL DH V+T +GE+L ++ ++Y ECS+ T + N+ +F
Sbjct: 139 GNKADL--------DHSR--QVSTEEGEKLATELACAFY-ECSACTGEGNITEIF 182
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ QE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKXDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ QE+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKXDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ G E+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 74 LDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLV 132
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL P V T Q ++L + G +IE S+KT+Q V F
Sbjct: 133 GNKCDL----------PSRT-VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 174
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
+ GQE + L P R + V V+ + + + S++ KWI +++ V ++LVG
Sbjct: 57 DTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQT-SKWIDDVRTERGSDVIIMLVGN 115
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL + + +T +GE+ K++ +IE S+KT NVK +F
Sbjct: 116 KTDLADKRQ----------ITIEEGEQRAKELSV-MFIETSAKTGYNVKQLF 156
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGT 60
+ GQE + L P+ YRG+ ++ + + ++ + LK W+ EL QH P + V + G
Sbjct: 60 DTAGQERFRALAPMYYRGSAAAIIVYDITKEETF-STLKNWVRELRQHGPPSIVVAIAGN 118
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL + + V ++ I A ++E S+K N+ +F
Sbjct: 119 KCDLTDVRE----------VMERDAKDYADSIHA-IFVETSAKNAININELF 159
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ G E+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 12/111 (10%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQE+++ + YRGA VL FS R S+E + W ++ +P LV K
Sbjct: 60 DTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFE-AISSWREKVVAEVGDIPTALVQNK 118
Query: 62 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
+DL +D + + E L K++ +Y S K NV VF
Sbjct: 119 IDLLDDS----------CIKNEEAEGLAKRLKLRFY-RTSVKEDLNVSEVF 158
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ G E+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ G E+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ G E+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+ + +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGT 60
+ GQE + L P YR A ++ + + S+ + W+ EL + S + + LVG
Sbjct: 58 DTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGN 116
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K+D ++ G V +GE+L ++ G ++ E S+KT +NV VF
Sbjct: 117 KIDXLQE-------GGERKVAREEGEKLAEEKGLLFF-ETSAKTGENVNDVF 160
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ G E+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 61 LDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 119
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 120 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 161
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ G E+Y+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLV
Sbjct: 56 LDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL V + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 13/109 (11%)
Query: 5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLD 63
GQE + + YRGA +L + + + S++N+ + WI + +H S V +++G K D
Sbjct: 64 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCD 122
Query: 64 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
+ + + V+ +GE+L G ++E S+K NV+ F
Sbjct: 123 VNDKRQ----------VSKERGEKLALDYGIK-FMETSAKANINVENAF 160
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 13/109 (11%)
Query: 5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLD 63
GQE + + YRGA +L + + + S++N+ + WI + +H S V +++G K D
Sbjct: 66 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCD 124
Query: 64 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
+ + + V+ +GE+L G ++E S+K NV+ F
Sbjct: 125 VNDKRQ----------VSKERGEKLALDYGIK-FMETSAKANINVENAF 162
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGT 60
+ GQE + + YRGA +L + + R ++ N L W+ + QH S + ++L+G
Sbjct: 76 DTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLTSWLEDARQHSSSNMVIMLIGN 134
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL + V +GE ++ G ++E S+KT NV+ F
Sbjct: 135 KSDLESRR----------DVKREEGEAFAREHGL-IFMETSAKTACNVEEAF 175
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 14/114 (12%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQEDY +R +R + F+ FS+ S+ ++ I ++ VP +LV
Sbjct: 67 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLV 125
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL EDK V V A+ R + Y+E S+KT+ NV VF
Sbjct: 126 GNKSDL-EDKRQ-------VSVEEAKN---RAEQWNVNYVETSAKTRANVDKVF 168
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGT 60
+ GQE + + YRGA +L + + R ++ N L W+ + QH + + ++L+G
Sbjct: 65 DTAGQESFRSITRSYYRGAAGALLVYDITRRDTF-NHLTTWLEDARQHSNSNMVIMLIGN 123
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL + V +GE ++ G ++E S+KT NV+ F
Sbjct: 124 KSDLESRR----------EVKKEEGEAFAREHGL-IFMETSAKTASNVEEAF 164
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 14/114 (12%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQEDY +R +R + F+ FS+ S+ ++ I ++ VP +LV
Sbjct: 71 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLV 129
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL EDK V V A+ R + Y+E S+KT+ NV VF
Sbjct: 130 GNKSDL-EDKRQ-------VSVEEAKN---RAEQWNVNYVETSAKTRANVDKVF 172
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 14/114 (12%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQEDY +R +R + F+ FS+ S+ ++ I ++ VP +LV
Sbjct: 59 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLV 117
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL EDK V V A+ R + Y+E S+KT+ NV VF
Sbjct: 118 GNKSDL-EDKRQ-------VSVEEAKN---RAEQWNVNYVETSAKTRANVDKVF 160
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 14/114 (12%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQEDY +R +R + F+ FS+ S+ ++ I ++ VP +LV
Sbjct: 57 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLV 115
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL EDK V V A+ + + Y+E S+KT+ NV VF
Sbjct: 116 GNKSDL-EDKRQ-------VSVEEAKNRADQWNVN---YVETSAKTRANVDKVF 158
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQE Y LR Y A ++ F + SR +Y+NV W +L +P+VL G K
Sbjct: 65 DTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNK 123
Query: 62 LDLREDK 68
+D+++ K
Sbjct: 124 VDIKDRK 130
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGT 60
+ GQE + + YRGA ++ + + R++Y N L W+ + ++ + P ++L+G
Sbjct: 70 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDARNLTNPNTVIILIGN 128
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL + VT + ++ ++ G ++E S+KT +NV+ F
Sbjct: 129 KADLEAQR----------DVTYEEAKQFAEENGL-LFLEASAKTGENVEDAF 169
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLD 63
GQE Y + YRGA +L + + + S+EN+ +KW+ EL+ + + ++LVG K D
Sbjct: 66 GQERYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKELRDNADSNIVILLVGNKSD 124
Query: 64 LR 65
L+
Sbjct: 125 LK 126
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE-LQHYSPGVPVVLVGT 60
+ GQE + L P R + ++ + + +R S+EN KWI + L V + LVG
Sbjct: 56 DTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNERGKDVIIALVGN 114
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL + L VT +G + ++ ++ E S+K N+K +F
Sbjct: 115 KTDLGD----------LRKVTYEEGXQKAQEYNTXFH-ETSAKAGHNIKVLF 155
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGT 60
+ G E + L P+ YRG+ ++ + + ++ + LK W+ EL QH P + V + G
Sbjct: 61 DTAGLERFRALAPMYYRGSAAAIIVYDITKEETF-STLKNWVRELRQHGPPSIVVAIAGN 119
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL + + V ++ I A ++E S+K N+ +F
Sbjct: 120 KCDLTDVRE----------VMERDAKDYADSIHA-IFVETSAKNAININELF 160
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGT 60
+ GQE + + YR A+ +LA+ + R+S+ +V WI +++ Y+ + +L+G
Sbjct: 84 DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGN 142
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL E L V+ A+ + L + IE S+K NV+ F
Sbjct: 143 KSDLSE----------LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQE + LR Y A ++ F + SR +Y+NV W +L +P+VL G K
Sbjct: 65 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNK 123
Query: 62 LDLREDK 68
+D+++ K
Sbjct: 124 VDIKDRK 130
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQE + LR Y A ++ F + SR +Y+NV W +L +P+VL G K
Sbjct: 65 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNK 123
Query: 62 LDLREDK 68
+D+++ K
Sbjct: 124 VDIKDRK 130
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQE + LR Y A ++ F + SR +Y+NV W +L +P+VL G K
Sbjct: 65 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNK 123
Query: 62 LDLREDK 68
+D+++ K
Sbjct: 124 VDIKDRK 130
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 18/117 (15%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVG 59
++ GQE++ +R R F+L F++ R S+ V K + L+ PVVLVG
Sbjct: 62 LDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVG 121
Query: 60 TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY---YIECSSKTQQNVKAVFD 113
K DL + VP + A GAS+ Y E S+K + NV F+
Sbjct: 122 NKADLESQRQ--------VPRSEASA------FGASHHVAYFEASAKLRLNVDEAFE 164
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQE + LR Y A ++ F + SR +Y+NV W +L +P+VL G K
Sbjct: 58 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNK 116
Query: 62 LDLREDK 68
+D+++ K
Sbjct: 117 VDIKDRK 123
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQE + LR Y A ++ F + SR +Y+NV W +L +P+VL G K
Sbjct: 65 DTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNK 123
Query: 62 LDLREDK 68
+D+++ K
Sbjct: 124 VDIKDRK 130
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQE + LR Y A ++ F + SR +Y+NV W +L +P+VL G K
Sbjct: 65 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNK 123
Query: 62 LDLREDK 68
+D+++ K
Sbjct: 124 VDIKDRK 130
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQE + LR Y A ++ F + SR +Y+NV W +L +P+VL G K
Sbjct: 70 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNK 128
Query: 62 LDLREDK 68
+D+++ K
Sbjct: 129 VDIKDRK 135
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQE + LR Y A ++ F + SR +Y+NV W +L +P+VL G K
Sbjct: 70 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNK 128
Query: 62 LDLREDK 68
+D+++ K
Sbjct: 129 VDIKDRK 135
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQE + LR Y A ++ F + SR +Y+NV W +L +P+VL G K
Sbjct: 65 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNK 123
Query: 62 LDLREDK 68
+D+++ K
Sbjct: 124 VDIKDRK 130
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 12/109 (11%)
Query: 5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
GQE + + YRG ++ + + S S+ NV K+W+ E+ V +LVG K
Sbjct: 67 GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNK--- 122
Query: 65 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 113
D P V T + Q+G + E S+K NV+ +F+
Sbjct: 123 -------NDDPERKVVETEDAYKFAGQMGIQLF-ETSAKENVNVEEMFN 163
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
+ GQE + + YRGA +L + + SR +Y N L W+ + + SP + V+L G
Sbjct: 80 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETY-NSLAAWLTDARTLASPNIVVILCGN 138
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL ++ L AQ EL ++E S+ T +NV+ F
Sbjct: 139 KKDLDPEREVTF----LEASRFAQENEL-------MFLETSALTGENVEEAF 179
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
+ GQE + + YRGA +L + + SR +Y N L W+ + + S + ++L G
Sbjct: 65 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGN 123
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL D+ L AQ EL ++E S+ T +NV+ F
Sbjct: 124 KKDLDADREV----TFLEASRFAQENEL-------MFLETSALTGENVEEAF 164
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 14/114 (12%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ G EDY +R +R + F+ FS+ S+ ++ I ++ VP +LV
Sbjct: 59 LDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLV 117
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
G K DL EDK V V A+ R + Y+E S+KT+ NV VF
Sbjct: 118 GNKSDL-EDKRQ-------VSVEEAKN---RAEQWNVNYVETSAKTRANVDKVF 160
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+++ +R R D F++ +S+ +AS+E+V + I ++ P++LV
Sbjct: 71 LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRE-SFPMILV 129
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 103
K+DL L VT QG+E+ + YIE S+K
Sbjct: 130 ANKVDLMH----------LRKVTRDQGKEMATKYNIP-YIETSAK 163
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ G E + +R L + F+L +SLV++ S++++ ++ I ++ Y VPV+LV
Sbjct: 56 LDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK-VPVILV 114
Query: 59 GTKLDL 64
G K+DL
Sbjct: 115 GNKVDL 120
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+++ +R R D F++ +S+ +AS+E+V + I ++ P++LV
Sbjct: 66 LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRE-SFPMILV 124
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 103
K+DL L VT QG+E+ + YIE S+K
Sbjct: 125 ANKVDLMH----------LRKVTRDQGKEMATKYNIP-YIETSAK 158
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+++ +R R D F++ +S+ +AS+E+V + I ++ P++LV
Sbjct: 71 LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRE-SFPMILV 129
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 103
K+DL L VT QG+E+ + YIE S+K
Sbjct: 130 ANKVDLMH----------LRKVTRDQGKEMATKYNIP-YIETSAK 163
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
G E + LR Y A ++ F + SR +Y+NV W +L +P+VL G K+D+
Sbjct: 63 GLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDV 121
Query: 65 REDK 68
+E K
Sbjct: 122 KERK 125
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQH--YSPGVPVVLVG 59
+ G E + L +R A F+L F L + S+ NV + WI +LQ YS +VL G
Sbjct: 76 DTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIVLCG 134
Query: 60 TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV 108
K DL + + V + EL ++ G Y+ E S+ N+
Sbjct: 135 NKSDLEDQR----------AVKEEEARELAEKYGIPYF-ETSAANGTNI 172
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Query: 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
++ GQE+++ +R R D F++ +S+ +AS+E+V + I ++ P++LV
Sbjct: 71 LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRE-SFPMILV 129
Query: 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 103
K+DL L VT QG+E+ + YIE S+K
Sbjct: 130 ANKVDLMH----------LRKVTRDQGKEMATKYNIP-YIETSAK 163
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
GQE + + YRGA ++ + + + S+ NV K+W+ E+ Y S V +LVG K D
Sbjct: 56 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCD 114
Query: 64 L 64
L
Sbjct: 115 L 115
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
G E + LR Y A ++ F + SR +Y+NV W +L +P+VL G K+D+
Sbjct: 62 GLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDV 120
Query: 65 REDK 68
+E K
Sbjct: 121 KERK 124
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGT 60
+ GQE + + +R AD +L + + S+ N+ ++W+ ++ + VP++LVG
Sbjct: 83 DTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGN 141
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV 108
K D+R+ A G V GE+L GA + E S+K N+
Sbjct: 142 KADIRD----TAATEGQKCVPGHFGEKLAMTYGA-LFCETSAKDGSNI 184
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 15/114 (13%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV--LVG 59
+ GQE + L P YRGA +L + + R ++ L W+ EL+ Y +V LVG
Sbjct: 70 DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVK-LDNWLNELETYCTRNDIVNXLVG 128
Query: 60 TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 113
K+D +E++ V +G + ++ + +IE S+KT V+ F+
Sbjct: 129 NKID-KENRE----------VDRNEGLKFARK-HSXLFIEASAKTCDGVQCAFE 170
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 28/115 (24%)
Query: 5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL-- 62
GQE Y + PL YRGA ++ F +S ++ + K W+ +L+ S ++LV K+
Sbjct: 102 GQERYASIVPLYYRGATCAIVVFD-ISNSNTLDRAKTWVNQLK-ISSNYIIILVANKIDK 159
Query: 63 -----DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
D+ E + Y D+ L +I+ S+KT N+K +F
Sbjct: 160 NKFQVDILEVQKYAQDNNLL-------------------FIQTSAKTGTNIKNIF 195
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ G E + LR Y A ++ F + SR +Y+NV W +L +P+VL G K
Sbjct: 67 DTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNK 125
Query: 62 LDLREDK 68
+D++E K
Sbjct: 126 VDVKERK 132
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ GQE + L Y A ++ F + SR +Y+NV W +L +P+VL G K
Sbjct: 65 DTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNK 123
Query: 62 LDLREDK 68
+D+++ K
Sbjct: 124 VDIKDRK 130
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 16/115 (13%)
Query: 1 MNVIGQEDYNRLRPLSYR-GADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGVPVVL 57
++ GQ++Y+ L P S+ G +VL +S+ S S++ V++ +L H VPVVL
Sbjct: 77 VDTAGQDEYSIL-PYSFIIGVHGYVLVYSVTSLHSFQ-VIESLYQKLHEGHGKTRVPVVL 134
Query: 58 VGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
VG K DL ++ V +G++L + GA+ ++E S++ Q + +F
Sbjct: 135 VGNKADLSPER----------EVQAVEGKKLAESWGAT-FMESSARENQLTQGIF 178
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ G E + LR Y A ++ F + SR +Y+NV W +L +P+VL G K
Sbjct: 67 DTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNK 125
Query: 62 LDLREDK 68
+D+++ K
Sbjct: 126 VDIKDRK 132
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 13/113 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGT 60
+ GQE Y + YRGA ++ + + +SYEN W+ EL ++ V V L+G
Sbjct: 68 DTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGN 126
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 113
K DL H VP ++ Q+ + E S+ +NV F+
Sbjct: 127 KSDLA--------HLRAVPTEESKTFAQENQL---LFTETSALNSENVDKAFE 168
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
+ GQE + + YRGA +L + + SR +Y N L W+ + + S + ++L G
Sbjct: 66 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGN 124
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL D+ L AQ EL ++E S+ T ++V+ F
Sbjct: 125 KKDLDADREV----TFLEASRFAQENEL-------MFLETSALTGEDVEEAF 165
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
G E + LR Y A ++ F + SR +Y+NV W +L +P+VL G K+D+
Sbjct: 64 GLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 122
Query: 65 REDK 68
++ K
Sbjct: 123 KDRK 126
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
+ G E + LR Y A ++ F + SR +Y+NV W +L +P+VL G K
Sbjct: 65 DTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNK 123
Query: 62 LDLREDK 68
+D+++ K
Sbjct: 124 VDIKDRK 130
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 13/112 (11%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGT 60
+ G E Y + YRGA ++ + + +SYEN W+ EL ++ V V L+G
Sbjct: 65 DTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLTELRENADDNVAVGLIGN 123
Query: 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K DL H VP A+ + Q+ + E S+ NV F
Sbjct: 124 KSDLA--------HLRAVPTDEAKNFAMENQM---LFTETSALNSDNVDKAF 164
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG-VPVVLVGT 60
+ GQE + + YRG+ ++ + + + S+ N +K W+ E+ Y+ V +LVG
Sbjct: 63 DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 61 KLDLRE 66
K DL++
Sbjct: 122 KCDLKD 127
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG-VPVVLVGT 60
+ GQE + + YRG+ ++ + + + S+ N +K W+ E+ Y+ V +LVG
Sbjct: 63 DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 61 KLDLRE 66
K DL++
Sbjct: 122 KCDLKD 127
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG-VPVVLVGT 60
+ GQE + + YRG+ ++ + + + S+ N +K W+ E+ Y+ V +LVG
Sbjct: 76 DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATSTVLKLLVGN 134
Query: 61 KLDLREDK 68
K DL++ +
Sbjct: 135 KCDLKDKR 142
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 14/113 (12%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVG 59
+ G + ++ LS F+L FS+ S+ S E + + K I +++ +PV+LVG
Sbjct: 62 DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVG 121
Query: 60 TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
K D + + V T + + + ++ + ++E S+K NVK +F
Sbjct: 122 NKCDETQRE-----------VDTREAQAVAQEWKCA-FMETSAKMNYNVKELF 162
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE-LQHYSP----GVPVV 56
+ GQE + L YRGAD VL F + + +++ L W E L SP P V
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSWRDEFLIQASPRDPENFPFV 121
Query: 57 LVGTKLDL 64
++G K+DL
Sbjct: 122 VLGNKIDL 129
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE-LQHYSP----GVPVV 56
+ GQE + L YRGAD VL F + + +++ L W E L SP P V
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSWRDEFLIQASPRDPENFPFV 121
Query: 57 LVGTKLDL 64
++G K+DL
Sbjct: 122 VLGNKIDL 129
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 12 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGTKLDLREDKH 69
LR + D F++ FS+ R S+ V + + L+ P +PV+LVG K DL +
Sbjct: 89 LRDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSDLARSR- 146
Query: 70 YLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
V+ +G L + + +IE S+ N + +F+ A
Sbjct: 147 ---------EVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFEGA 182
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 12/96 (12%)
Query: 20 ADVFVLAFSLVSRASYENVLKKWIP-ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 78
D +++ +S+ RAS+E + I + +P++LVG K DL + V
Sbjct: 81 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXRE--------V 132
Query: 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 114
V+ + + + +IE S+ Q NVK +F+
Sbjct: 133 SVSEGRAXAV---VFDXKFIETSAAVQHNVKELFEG 165
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE-LQHYSP----GVPVV 56
+ GQE + L YRGAD VL F + + +++ L W E L SP P V
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSWRDEFLIQASPRDPENFPFV 121
Query: 57 LVGTKLDL 64
++G K+D
Sbjct: 122 VLGNKIDF 129
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 34.7 bits (78), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 12/96 (12%)
Query: 20 ADVFVLAFSLVSRASYENVLKKWIP-ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 78
D +++ +S+ RAS+E + I + +P++LVG K DL + V
Sbjct: 81 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXRE--------V 132
Query: 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 114
V+ + + + +IE S+ Q NVK +F+
Sbjct: 133 SVSEGRAXAV---VFDCKFIETSAAVQHNVKELFEG 165
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 20 ADVFVLAFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGTKLDLREDKHYLADHPGL 77
D F++ FS+ R S+ V + + L+ P +PV+LVG K DL +
Sbjct: 86 GDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSDLARSR--------- 135
Query: 78 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
V+ +G L + + +IE S+ N + +F+ A
Sbjct: 136 -EVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFEGA 171
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 20 ADVFVLAFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGTKLDLREDKHYLADHPGL 77
D F++ FS+ R S+ V + + L+ P +PV+LVG K DL +
Sbjct: 76 GDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSDLARSR--------- 125
Query: 78 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
V+ +G L + + +IE S+ N + +F+ A
Sbjct: 126 -EVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFEGA 161
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 33.9 bits (76), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 18 RGADVFVLAFSLVSRASYENVLKKWIP-ELQHYSPGVPVVLVGTKLDLREDKHYLADHPG 76
+G +V+ +S+ R S+E+ + I H + VP++LVG K DL + +
Sbjct: 76 QGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGR 135
Query: 77 LVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 114
V + +IE S+ Q NV +F+
Sbjct: 136 ACAV-----------VFDCKFIETSATLQHNVAELFEG 162
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 33.9 bits (76), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 12/96 (12%)
Query: 20 ADVFVLAFSLVSRASYENVLKKWIP-ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 78
D +++ +S+ RAS+E + I + +P++LVG K DL +
Sbjct: 81 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCR---------- 130
Query: 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 114
V+ ++G + +IE S+ Q NVK +F+
Sbjct: 131 EVSVSEGRAC-AVVFDCKFIETSAAVQHNVKELFEG 165
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 33.5 bits (75), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 2 NVIGQEDYNR-LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLV 58
+ GQE + + + YR V + + + AS+ + L WI E + + + +P +LV
Sbjct: 75 DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHS-LPAWIEECKQHLLANDIPRILV 133
Query: 59 GTKLDLR 65
G K DLR
Sbjct: 134 GNKCDLR 140
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 33.5 bits (75), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 12/96 (12%)
Query: 20 ADVFVLAFSLVSRASYENVLKKWIP-ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 78
D +++ +S+ RAS+E + I + +P++LVG K DL +
Sbjct: 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCR---------- 161
Query: 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 114
V+ ++G + +IE S+ Q NVK +F+
Sbjct: 162 EVSVSEGRAC-AVVFDCKFIETSAAVQHNVKELFEG 196
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 32.3 bits (72), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 2 NVIGQEDYNR-LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLV 58
+ GQE + + + YR V + + AS+ + L WI E + + + +P +LV
Sbjct: 84 DTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHS-LPAWIEECKQHLLANDIPRILV 142
Query: 59 GTKLDLR 65
G K DLR
Sbjct: 143 GNKCDLR 149
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 12/96 (12%)
Query: 20 ADVFVLAFSLVSRASYENVLKKWIP-ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 78
D +V+ +S+ + S+E + + + VP++LVG K DL + D
Sbjct: 73 GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC 132
Query: 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 114
V + +IE S+ NV+A+F+
Sbjct: 133 AV-----------VFDCKFIETSAALHHNVQALFEG 157
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 12/96 (12%)
Query: 20 ADVFVLAFSLVSRASYENVLKKWIP-ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 78
D +V+ +S+ + S+E + + + VP++LVG K DL + D
Sbjct: 78 GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC 137
Query: 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 114
V + +IE S+ NV+A+F+
Sbjct: 138 AV-----------VFDCKFIETSAALHHNVQALFEG 162
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 12/96 (12%)
Query: 20 ADVFVLAFSLVSRASYENVLKKWIP-ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 78
D +V+ +S+ + S+E + + + VP++LVG K DL + D
Sbjct: 78 GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC 137
Query: 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 114
V + +IE S+ NV+A+F+
Sbjct: 138 AV-----------VFDCKFIETSAALHHNVQALFEG 162
>pdb|3A52|A Chain A, Crystal Structure Of Cold-Active Alkailne Phosphatase From
Psychrophile Shewanella Sp.
pdb|3A52|B Chain B, Crystal Structure Of Cold-Active Alkailne Phosphatase From
Psychrophile Shewanella Sp
Length = 400
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 20/117 (17%)
Query: 3 VIGQEDYNRLRPLSYRGAD---------VFVLAFSLVSRASYENVLKKWIPELQHYSPGV 53
VI D N L L+ + D V ++ SL+ A + N + + E+Q ++ +
Sbjct: 190 VIDDTDANTLSKLTQKSLDLLSQNEKGFVLLVEGSLIDWAGHNNDIATAMAEMQGFANAI 249
Query: 54 PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKA 110
VV + Y+ HP + V TA IGA+ + +K + + A
Sbjct: 250 EVV-----------EQYIRQHPDTLLVVTADHNTGGLSIGANGEYQWDTKLPKGISA 295
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 33/68 (48%)
Query: 5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
G+E++ P +++ + L + + K W+ ++ + PV+LVGT LD+
Sbjct: 65 GREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVILVGTHLDV 124
Query: 65 REDKHYLA 72
++K A
Sbjct: 125 SDEKQRKA 132
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 33/68 (48%)
Query: 5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
G+E++ P +++ + L + + K W+ ++ + PV+LVGT LD+
Sbjct: 63 GREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVILVGTHLDV 122
Query: 65 REDKHYLA 72
++K A
Sbjct: 123 SDEKQRKA 130
>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|C Chain C, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|D Chain D, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
Length = 304
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 18 RGADVFVLAFSLVSRASYENVL------KKWIPEL-QHYSPGVPVVLVGTKLDLREDKHY 70
+ AD+F ++RA+ + VL + +L +PG PV+ GT LD +H
Sbjct: 91 KNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGSGTVLDSARFRHL 150
Query: 71 LADHPGL 77
+A H G+
Sbjct: 151 MAQHAGV 157
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 26/120 (21%)
Query: 1 MNVIGQEDYNRLRPLSYRGADV--FVLAFSLVSRASYENV------LKKWIPELQHYSPG 52
++ GQ++Y+ + P +Y D+ ++L +S+ S S+E + L + ++Q
Sbjct: 54 VDTAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ----- 106
Query: 53 VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
+P++LVG K DL ++ ++ +G+ L + A+ ++E S+K Q VF
Sbjct: 107 IPIMLVGNKKDLHMER----------VISYEEGKALAESWNAA-FLESSAKENQTAVDVF 155
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 24/119 (20%)
Query: 1 MNVIGQEDYNRLRPLSYR-GADVFVLAFSLVSRASYENV------LKKWIPELQHYSPGV 53
++ GQ++Y+ + P +Y + ++L +S+ S S+E + L + ++Q +
Sbjct: 59 VDTAGQDEYS-IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-----I 112
Query: 54 PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
P++LVG K DL ++ ++ +G+ L + A+ ++E S+K Q VF
Sbjct: 113 PIMLVGNKKDLHMER----------VISYEEGKALAESWNAA-FLESSAKENQTAVDVF 160
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 26/120 (21%)
Query: 1 MNVIGQEDYNRLRPLSYRGADV--FVLAFSLVSRASYENV------LKKWIPELQHYSPG 52
++ GQ++Y+ + P +Y D+ ++L +S+ S S+E + L + ++Q
Sbjct: 57 VDTAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ----- 109
Query: 53 VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
+P++LVG K DL ++ ++ +G+ L + A+ ++E S+K Q VF
Sbjct: 110 IPIMLVGNKKDLHMER----------VISYEEGKALAESWNAA-FLESSAKENQTAVDVF 158
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 26/120 (21%)
Query: 1 MNVIGQEDYNRLRPLSYRGADV--FVLAFSLVSRASYENV------LKKWIPELQHYSPG 52
++ GQ++Y+ + P +Y D+ ++L +S+ S S+E + L + ++Q
Sbjct: 59 VDTAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ----- 111
Query: 53 VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
+P++LVG K DL ++ ++ +G+ L + A+ ++E S+K Q VF
Sbjct: 112 IPIMLVGNKKDLHMER----------VISYEEGKALAESWNAA-FLESSAKENQTAVDVF 160
>pdb|2K19|A Chain A, Nmr Solution Structure Of Pisi
Length = 98
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 34 SYENVLKKWIPELQHYSPGVPVVLVGTKLD----LREDKHYLADH 74
S + VL+ ++ EL+ S VP++L LD +R D L+D+
Sbjct: 36 SLKKVLENYLEELKQKSASVPLILSRMNLDISKAIRNDGVTLSDY 80
>pdb|2WPG|A Chain A, Sucrose Hydrolase
Length = 637
Score = 26.9 bits (58), Expect = 3.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 51 PGVPVVLVGTKLDLREDKHYLAD 73
PGVP++ +G +L L D YL D
Sbjct: 486 PGVPLIYMGDELALPNDTAYLDD 508
>pdb|1X8M|A Chain A, X-Ray Structure Of Pectin Degrading Enzyme 5-Keto 4-
Deoxyuronate Isomerase From Escherichia Coli
pdb|1X8M|B Chain B, X-Ray Structure Of Pectin Degrading Enzyme 5-Keto 4-
Deoxyuronate Isomerase From Escherichia Coli
pdb|1X8M|C Chain C, X-Ray Structure Of Pectin Degrading Enzyme 5-Keto 4-
Deoxyuronate Isomerase From Escherichia Coli
pdb|1X8M|D Chain D, X-Ray Structure Of Pectin Degrading Enzyme 5-Keto 4-
Deoxyuronate Isomerase From Escherichia Coli
pdb|1X8M|E Chain E, X-Ray Structure Of Pectin Degrading Enzyme 5-Keto 4-
Deoxyuronate Isomerase From Escherichia Coli
pdb|1X8M|F Chain F, X-Ray Structure Of Pectin Degrading Enzyme 5-Keto 4-
Deoxyuronate Isomerase From Escherichia Coli
Length = 288
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 76 GLVPVT--TAQGEELRKQIGASYYIE 99
G++P+T + G E+ KQ+G SY++E
Sbjct: 51 GIMPITKTVSVGGEVGKQLGVSYFLE 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,937,597
Number of Sequences: 62578
Number of extensions: 144059
Number of successful extensions: 845
Number of sequences better than 100.0: 279
Number of HSP's better than 100.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 413
Number of HSP's gapped (non-prelim): 279
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)