Query 031970
Match_columns 150
No_of_seqs 111 out of 1181
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 12:28:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031970.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031970hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 4.8E-30 1.6E-34 183.3 10.8 109 1-121 67-176 (216)
2 2j0v_A RAC-like GTP-binding pr 99.9 1.4E-25 4.7E-30 158.6 11.7 138 1-140 62-203 (212)
3 4dsu_A GTPase KRAS, isoform 2B 99.9 1.1E-24 3.6E-29 150.8 9.0 126 1-139 57-189 (189)
4 2bov_A RAla, RAS-related prote 99.9 2E-24 6.7E-29 151.5 10.5 109 1-121 67-177 (206)
5 3oes_A GTPase rhebl1; small GT 99.9 3E-24 1E-28 150.7 10.9 123 1-139 77-201 (201)
6 3reg_A RHO-like small GTPase; 99.9 9.1E-24 3.1E-28 147.3 12.9 116 1-124 76-191 (194)
7 3q3j_B RHO-related GTP-binding 99.9 5.9E-24 2E-28 151.0 11.6 124 1-124 80-206 (214)
8 2fu5_C RAS-related protein RAB 99.9 5.6E-24 1.9E-28 146.8 10.3 110 1-122 62-172 (183)
9 3bwd_D RAC-like GTP-binding pr 99.9 9.5E-24 3.3E-28 145.3 11.3 122 1-122 61-182 (182)
10 1mh1_A RAC1; GTP-binding, GTPa 99.9 2.6E-23 9E-28 143.4 12.7 124 1-124 58-183 (186)
11 3t5g_A GTP-binding protein RHE 99.9 2.2E-23 7.7E-28 143.5 11.8 113 1-125 59-173 (181)
12 3tw8_B RAS-related protein RAB 99.9 2E-23 7E-28 143.2 11.2 110 1-122 63-172 (181)
13 2atx_A Small GTP binding prote 99.9 5.2E-23 1.8E-27 143.3 13.3 122 1-122 71-194 (194)
14 2hup_A RAS-related protein RAB 99.9 2.1E-23 7.3E-28 146.7 10.4 111 1-122 83-194 (201)
15 2q3h_A RAS homolog gene family 99.9 4.5E-23 1.6E-27 144.4 11.7 122 1-122 73-196 (201)
16 2gf0_A GTP-binding protein DI- 99.9 9.9E-24 3.4E-28 147.2 7.9 109 1-122 61-172 (199)
17 2hxs_A RAB-26, RAS-related pro 99.9 4.3E-23 1.5E-27 141.5 10.7 111 1-123 61-175 (178)
18 1m7b_A RND3/RHOE small GTP-bin 99.9 4.7E-23 1.6E-27 142.7 10.9 121 1-121 60-183 (184)
19 3q85_A GTP-binding protein REM 99.9 6.4E-23 2.2E-27 139.5 11.5 109 1-121 56-167 (169)
20 3q72_A GTP-binding protein RAD 99.9 1E-22 3.4E-27 138.2 12.2 109 1-121 54-164 (166)
21 3cpj_B GTP-binding protein YPT 99.9 1.4E-22 4.7E-27 144.5 13.1 112 1-124 67-179 (223)
22 2efe_B Small GTP-binding prote 99.9 9.2E-23 3.1E-27 140.2 11.8 111 1-123 66-177 (181)
23 1z08_A RAS-related protein RAB 99.9 9.8E-23 3.3E-27 138.6 11.7 109 1-121 60-169 (170)
24 3cbq_A GTP-binding protein REM 99.9 8.3E-23 2.8E-27 143.2 11.5 110 1-122 77-189 (195)
25 2j1l_A RHO-related GTP-binding 99.9 8.1E-23 2.8E-27 145.0 11.2 122 1-122 87-210 (214)
26 1z2a_A RAS-related protein RAB 99.9 1.2E-22 4.1E-27 137.8 11.5 109 1-121 59-167 (168)
27 2a5j_A RAS-related protein RAB 99.9 2E-22 6.7E-27 140.3 12.7 109 1-121 75-184 (191)
28 3c5c_A RAS-like protein 12; GD 99.9 7.7E-23 2.6E-27 142.2 10.6 108 1-121 74-186 (187)
29 2bcg_Y Protein YP2, GTP-bindin 99.9 2.2E-22 7.6E-27 141.5 13.1 110 1-122 62-172 (206)
30 2g6b_A RAS-related protein RAB 99.9 1.6E-22 5.6E-27 138.8 12.0 110 1-122 65-175 (180)
31 2ew1_A RAS-related protein RAB 99.9 5.1E-23 1.7E-27 145.1 9.6 109 1-121 80-189 (201)
32 2g3y_A GTP-binding protein GEM 99.9 1E-22 3.5E-27 144.8 11.1 109 1-121 92-203 (211)
33 1r2q_A RAS-related protein RAB 99.9 1.3E-22 4.5E-27 137.7 11.1 108 1-120 60-168 (170)
34 2gco_A H9, RHO-related GTP-bin 99.9 3.9E-22 1.3E-26 140.0 13.8 121 1-121 78-200 (201)
35 3kkq_A RAS-related protein M-R 99.9 8.1E-23 2.8E-27 140.9 10.0 109 1-121 71-182 (183)
36 3dz8_A RAS-related protein RAB 99.9 3.7E-23 1.3E-27 144.0 8.2 110 1-122 77-187 (191)
37 2gf9_A RAS-related protein RAB 99.9 2.5E-22 8.6E-27 139.5 12.4 109 1-121 76-185 (189)
38 1z0f_A RAB14, member RAS oncog 99.9 1.5E-22 5E-27 138.7 11.1 109 1-121 69-178 (179)
39 3tkl_A RAS-related protein RAB 99.9 1.1E-22 3.8E-27 141.6 10.5 111 1-123 70-181 (196)
40 2fg5_A RAB-22B, RAS-related pr 99.9 1.3E-22 4.4E-27 141.5 10.7 111 1-123 77-188 (192)
41 4gzl_A RAS-related C3 botulinu 99.9 1.2E-22 4.2E-27 143.1 10.5 119 1-119 83-203 (204)
42 1z0j_A RAB-22, RAS-related pro 99.9 3.1E-22 1.1E-26 136.0 12.1 108 1-120 60-168 (170)
43 1vg8_A RAS-related protein RAB 99.9 1E-22 3.5E-27 142.9 9.9 108 1-121 62-175 (207)
44 2nzj_A GTP-binding protein REM 99.9 1.5E-22 5.1E-27 138.3 10.2 109 1-121 57-169 (175)
45 3t1o_A Gliding protein MGLA; G 99.9 3.8E-23 1.3E-27 143.7 7.4 109 1-122 79-193 (198)
46 1gwn_A RHO-related GTP-binding 99.9 1.6E-22 5.3E-27 142.9 10.6 121 1-121 81-204 (205)
47 2fv8_A H6, RHO-related GTP-bin 99.9 5.9E-22 2E-26 139.7 13.5 123 1-123 78-202 (207)
48 1u8z_A RAS-related protein RAL 99.9 1.4E-22 4.9E-27 137.1 9.9 109 1-121 57-167 (168)
49 1g16_A RAS-related protein SEC 99.9 2.7E-22 9.4E-27 136.2 11.3 109 1-122 57-166 (170)
50 2o52_A RAS-related protein RAB 99.9 1.8E-22 6.2E-27 141.7 10.2 109 1-121 79-188 (200)
51 1ek0_A Protein (GTP-binding pr 99.9 2.7E-22 9.4E-27 136.1 10.5 111 1-120 57-168 (170)
52 2bme_A RAB4A, RAS-related prot 99.9 3.5E-22 1.2E-26 137.9 11.2 109 1-121 64-173 (186)
53 3bc1_A RAS-related protein RAB 99.9 1.3E-22 4.5E-27 140.5 9.0 110 1-122 75-186 (195)
54 1c1y_A RAS-related protein RAP 99.9 3E-22 1E-26 135.7 10.5 109 1-120 56-166 (167)
55 3ihw_A Centg3; RAS, centaurin, 99.9 3.3E-22 1.1E-26 138.9 10.6 108 1-122 72-181 (184)
56 1ky3_A GTP-binding protein YPT 99.9 3.7E-22 1.3E-26 137.0 10.7 111 1-121 63-178 (182)
57 2yc2_C IFT27, small RAB-relate 99.9 1.5E-22 5E-27 142.0 8.7 111 1-123 78-194 (208)
58 1zbd_A Rabphilin-3A; G protein 99.9 4.7E-22 1.6E-26 139.4 11.1 109 1-121 62-171 (203)
59 1x3s_A RAS-related protein RAB 99.9 7.5E-22 2.5E-26 137.1 11.9 110 1-123 69-180 (195)
60 2oil_A CATX-8, RAS-related pro 99.9 2.9E-22 1E-26 139.4 9.5 109 1-121 79-188 (193)
61 2cjw_A GTP-binding protein GEM 99.9 7.5E-22 2.6E-26 138.0 11.4 110 1-122 61-173 (192)
62 2fn4_A P23, RAS-related protei 99.9 3.8E-22 1.3E-26 136.8 9.8 110 1-122 62-173 (181)
63 2il1_A RAB12; G-protein, GDP, 99.9 3.1E-22 1.1E-26 139.6 9.0 110 1-121 80-190 (192)
64 1wms_A RAB-9, RAB9, RAS-relate 99.9 1.2E-21 4E-26 134.2 11.7 110 1-122 61-175 (177)
65 2a9k_A RAS-related protein RAL 99.9 5.7E-22 2E-26 136.6 9.9 109 1-121 71-181 (187)
66 2p5s_A RAS and EF-hand domain 99.9 5E-22 1.7E-26 139.2 9.5 115 1-121 82-197 (199)
67 2f7s_A C25KG, RAS-related prot 99.9 1.6E-22 5.4E-27 143.3 7.0 110 1-122 89-200 (217)
68 2y8e_A RAB-protein 6, GH09086P 99.9 6.8E-22 2.3E-26 135.3 9.7 109 1-121 68-177 (179)
69 1z06_A RAS-related protein RAB 99.9 7.9E-22 2.7E-26 136.9 9.6 108 1-120 74-187 (189)
70 3gj0_A GTP-binding nuclear pro 99.9 3.3E-22 1.1E-26 142.2 7.7 109 1-123 69-177 (221)
71 3clv_A RAB5 protein, putative; 99.9 3.3E-21 1.1E-25 134.2 12.4 107 1-121 98-204 (208)
72 4djt_A GTP-binding nuclear pro 99.9 1E-21 3.4E-26 139.2 9.8 111 1-123 66-177 (218)
73 4bas_A ADP-ribosylation factor 99.9 6.8E-22 2.3E-26 137.8 8.8 113 1-122 68-190 (199)
74 1kao_A RAP2A; GTP-binding prot 99.9 6.2E-22 2.1E-26 133.8 8.3 108 1-120 56-165 (167)
75 2erx_A GTP-binding protein DI- 99.9 6.2E-22 2.1E-26 134.6 7.8 109 1-121 56-167 (172)
76 2iwr_A Centaurin gamma 1; ANK 99.9 1.1E-21 3.9E-26 134.6 9.0 108 1-122 59-170 (178)
77 3con_A GTPase NRAS; structural 99.9 2.9E-21 1E-25 133.9 11.1 108 1-121 74-183 (190)
78 3cph_A RAS-related protein SEC 99.9 3E-21 1E-25 136.0 11.2 108 1-121 74-182 (213)
79 2ce2_X GTPase HRAS; signaling 99.9 2.6E-21 9E-26 130.5 10.2 108 1-121 56-165 (166)
80 2wkq_A NPH1-1, RAS-related C3 99.9 4.2E-21 1.4E-25 143.6 11.9 122 1-122 208-331 (332)
81 3llu_A RAS-related GTP-binding 99.9 1.4E-21 4.8E-26 136.7 8.5 114 1-120 74-196 (196)
82 1f6b_A SAR1; gtpases, N-termin 99.9 3.5E-21 1.2E-25 135.1 10.0 106 1-119 74-197 (198)
83 3l0i_B RAS-related protein RAB 99.9 1.7E-22 5.9E-27 141.5 3.0 109 1-121 87-196 (199)
84 1upt_A ARL1, ADP-ribosylation 99.9 1.6E-21 5.4E-26 132.7 7.7 108 1-122 56-170 (171)
85 2atv_A RERG, RAS-like estrogen 99.8 1.9E-21 6.4E-26 135.9 7.9 108 1-121 81-191 (196)
86 1zj6_A ADP-ribosylation factor 99.8 4.6E-21 1.6E-25 132.8 9.8 110 1-124 65-181 (187)
87 1m2o_B GTP-binding protein SAR 99.8 6.4E-21 2.2E-25 132.9 9.9 105 1-118 72-189 (190)
88 1r8s_A ADP-ribosylation factor 99.8 7.3E-22 2.5E-26 133.7 4.9 107 1-121 49-162 (164)
89 1ksh_A ARF-like protein 2; sma 99.8 1.1E-20 3.9E-25 130.5 10.5 108 1-122 67-181 (186)
90 2h57_A ADP-ribosylation factor 99.8 2E-20 6.8E-25 129.9 11.2 107 1-121 72-187 (190)
91 1fzq_A ADP-ribosylation factor 99.8 5.8E-21 2E-25 132.1 8.1 107 1-121 65-178 (181)
92 2h17_A ADP-ribosylation factor 99.8 1.2E-20 4E-25 130.2 8.9 104 1-118 70-180 (181)
93 3th5_A RAS-related C3 botulinu 99.7 2.3E-22 7.7E-27 141.3 0.0 119 1-119 83-203 (204)
94 2b6h_A ADP-ribosylation factor 99.8 2.8E-21 9.4E-26 134.9 5.3 107 1-121 78-191 (192)
95 2zej_A Dardarin, leucine-rich 99.8 2.3E-21 7.8E-26 134.4 4.5 115 1-123 61-180 (184)
96 2x77_A ADP-ribosylation factor 99.8 6.1E-21 2.1E-25 132.3 6.5 108 1-122 71-185 (189)
97 3r7w_B Gtpase2, GTP-binding pr 99.8 1.4E-21 4.9E-26 146.5 3.5 118 1-124 51-177 (331)
98 1zd9_A ADP-ribosylation factor 99.8 3.1E-20 1.1E-24 128.9 8.2 107 1-121 72-185 (188)
99 1moz_A ARL1, ADP-ribosylation 99.8 6.5E-20 2.2E-24 126.2 9.6 107 1-121 67-180 (183)
100 1cip_A Protein (guanine nucleo 99.8 6.6E-20 2.3E-24 139.3 6.6 119 1-121 198-344 (353)
101 3o47_A ADP-ribosylation factor 99.8 4.1E-20 1.4E-24 139.3 4.4 108 1-122 214-328 (329)
102 3c5h_A Glucocorticoid receptor 99.8 4.5E-19 1.5E-23 129.2 8.8 104 3-120 125-254 (255)
103 2xtz_A Guanine nucleotide-bind 99.8 2.1E-19 7.2E-24 136.5 7.2 120 1-121 188-345 (354)
104 3r7w_A Gtpase1, GTP-binding pr 99.8 4E-19 1.4E-23 132.7 7.9 117 1-123 57-183 (307)
105 2fh5_B SR-beta, signal recogni 99.8 7.2E-19 2.5E-23 124.1 7.9 109 1-118 59-213 (214)
106 2lkc_A Translation initiation 99.8 3.6E-18 1.2E-22 116.8 10.9 105 1-122 60-172 (178)
107 1azs_C GS-alpha; complex (lyas 99.8 8.2E-19 2.8E-23 135.0 8.1 120 1-122 222-386 (402)
108 3lvq_E ARF-GAP with SH3 domain 99.8 3.6E-19 1.2E-23 140.4 5.9 109 1-123 371-486 (497)
109 2f9l_A RAB11B, member RAS onco 99.8 9.4E-18 3.2E-22 117.4 12.4 109 1-121 59-168 (199)
110 1zcb_A G alpha I/13; GTP-bindi 99.8 8.3E-19 2.9E-23 133.6 6.8 119 1-121 206-353 (362)
111 1u0l_A Probable GTPase ENGC; p 99.8 2E-18 7E-23 128.6 8.8 99 1-117 68-169 (301)
112 3ohm_A Guanine nucleotide-bind 99.8 6.5E-19 2.2E-23 132.4 5.3 120 1-122 172-319 (327)
113 2wji_A Ferrous iron transport 99.7 1E-18 3.6E-23 118.9 5.5 101 1-119 55-163 (165)
114 2qu8_A Putative nucleolar GTP- 99.7 3.8E-18 1.3E-22 121.9 7.9 111 1-123 81-207 (228)
115 1oix_A RAS-related protein RAB 99.7 3.7E-17 1.3E-21 113.9 11.3 107 1-119 83-190 (191)
116 3dpu_A RAB family protein; roc 99.7 7.2E-18 2.4E-22 134.3 6.9 108 1-123 103-210 (535)
117 2cxx_A Probable GTP-binding pr 99.7 3.7E-18 1.3E-22 117.8 3.6 109 1-122 49-185 (190)
118 4fid_A G protein alpha subunit 99.7 9.4E-18 3.2E-22 126.6 4.9 119 1-121 166-328 (340)
119 2dyk_A GTP-binding protein; GT 99.7 1.3E-17 4.4E-22 112.2 4.3 100 1-119 54-160 (161)
120 1svi_A GTP-binding protein YSX 99.7 7.6E-17 2.6E-21 111.8 8.2 107 1-120 74-194 (195)
121 3iev_A GTP-binding protein ERA 99.7 1E-16 3.5E-21 119.7 9.2 109 1-122 64-183 (308)
122 3pqc_A Probable GTP-binding pr 99.7 5.6E-17 1.9E-21 112.2 6.6 108 1-121 73-194 (195)
123 2wjg_A FEOB, ferrous iron tran 99.7 3.3E-17 1.1E-21 113.1 4.4 105 1-123 59-171 (188)
124 2gj8_A MNME, tRNA modification 99.6 1.6E-17 5.4E-22 114.0 1.0 102 1-122 57-167 (172)
125 4dcu_A GTP-binding protein ENG 99.6 3.7E-16 1.3E-20 122.3 7.1 106 1-120 248-368 (456)
126 3a1s_A Iron(II) transport prot 99.6 5.7E-16 2E-20 113.0 7.3 103 1-121 57-167 (258)
127 3b1v_A Ferrous iron uptake tra 99.6 1.8E-16 6.3E-21 116.5 4.6 102 1-120 54-163 (272)
128 4dhe_A Probable GTP-binding pr 99.6 8.2E-16 2.8E-20 108.9 7.2 111 1-123 84-213 (223)
129 1wf3_A GTP-binding protein; GT 99.6 3.9E-16 1.3E-20 116.2 5.4 105 1-121 60-173 (301)
130 3sjy_A Translation initiation 99.6 1.8E-15 6E-20 116.8 8.3 113 1-123 80-194 (403)
131 3iby_A Ferrous iron transport 99.6 2.2E-16 7.4E-21 115.2 2.6 100 1-118 53-164 (256)
132 2hjg_A GTP-binding protein ENG 99.6 8.8E-16 3E-20 119.5 5.8 106 1-120 228-348 (436)
133 3cb4_D GTP-binding protein LEP 99.6 2E-15 6.8E-20 121.5 7.7 107 1-123 76-184 (599)
134 2ywe_A GTP-binding protein LEP 99.6 3E-15 1E-19 120.3 8.7 107 1-123 78-186 (600)
135 3gee_A MNME, tRNA modification 99.6 4.8E-15 1.6E-19 116.5 9.3 102 1-120 286-397 (476)
136 3qq5_A Small GTP-binding prote 99.6 9.4E-16 3.2E-20 118.9 4.4 103 1-122 88-197 (423)
137 3i8s_A Ferrous iron transport 99.6 3.4E-16 1.2E-20 115.1 1.7 104 1-122 55-170 (274)
138 1nrj_B SR-beta, signal recogni 99.6 3.4E-16 1.1E-20 110.6 1.3 101 1-107 60-170 (218)
139 2e87_A Hypothetical protein PH 99.6 1.5E-14 5E-19 110.0 9.6 107 1-121 219-336 (357)
140 2yv5_A YJEQ protein; hydrolase 99.5 1.8E-14 6E-19 107.4 9.1 98 5-116 65-164 (302)
141 1lnz_A SPO0B-associated GTP-bi 99.5 4.1E-15 1.4E-19 112.5 5.6 109 1-124 211-333 (342)
142 3k53_A Ferrous iron transport 99.5 6.2E-15 2.1E-19 108.0 5.5 105 1-122 55-167 (271)
143 3tr5_A RF-3, peptide chain rel 99.5 3.4E-14 1.2E-18 113.0 10.0 63 1-67 87-149 (528)
144 1mky_A Probable GTP-binding pr 99.5 1E-14 3.6E-19 113.6 6.7 103 1-121 54-166 (439)
145 1s0u_A EIF-2-gamma, translatio 99.5 2.6E-14 9E-19 110.4 8.7 108 1-122 86-199 (408)
146 1g7s_A Translation initiation 99.5 1.4E-13 4.8E-18 110.8 13.1 114 1-121 75-218 (594)
147 3izy_P Translation initiation 99.5 4.8E-15 1.6E-19 117.8 4.0 108 1-121 57-168 (537)
148 1wb1_A Translation elongation 99.5 3.3E-14 1.1E-18 112.0 7.9 105 1-120 78-188 (482)
149 2hjg_A GTP-binding protein ENG 99.5 6.6E-15 2.3E-19 114.6 2.8 103 1-122 56-166 (436)
150 1xzp_A Probable tRNA modificat 99.5 4.9E-14 1.7E-18 110.9 7.2 100 1-120 296-404 (482)
151 2c78_A Elongation factor TU-A; 99.5 1.4E-14 4.7E-19 111.8 4.0 111 1-122 80-213 (405)
152 1kk1_A EIF2gamma; initiation o 99.5 6E-14 2E-18 108.4 7.0 108 1-123 88-202 (410)
153 1d2e_A Elongation factor TU (E 99.5 3.8E-14 1.3E-18 109.2 5.1 111 1-122 71-196 (397)
154 1ega_A Protein (GTP-binding pr 99.4 3.2E-13 1.1E-17 100.5 9.1 106 1-121 61-175 (301)
155 1jny_A EF-1-alpha, elongation 99.4 1.1E-13 3.7E-18 107.8 6.5 107 1-113 89-205 (435)
156 3geh_A MNME, tRNA modification 99.4 2.9E-13 9.9E-18 106.1 8.3 101 1-122 277-385 (462)
157 3p26_A Elongation factor 1 alp 99.4 2.9E-13 9.9E-18 106.6 7.2 103 1-110 116-227 (483)
158 1zun_B Sulfate adenylate trans 99.4 1.3E-13 4.3E-18 107.4 4.9 102 1-111 109-214 (434)
159 2elf_A Protein translation elo 99.4 2.1E-13 7E-18 104.2 5.9 107 1-121 65-180 (370)
160 3j2k_7 ERF3, eukaryotic polype 99.4 2.9E-13 1E-17 105.5 6.8 106 1-113 100-217 (439)
161 1zo1_I IF2, translation initia 99.4 3.1E-14 1.1E-18 112.3 1.1 104 1-118 56-164 (501)
162 1r5b_A Eukaryotic peptide chai 99.4 6.5E-14 2.2E-18 109.9 2.5 106 1-112 126-243 (467)
163 3avx_A Elongation factor TS, e 99.4 2.8E-13 9.5E-18 114.9 5.7 111 1-122 364-487 (1289)
164 1mky_A Probable GTP-binding pr 99.4 2.2E-12 7.5E-17 100.5 10.3 106 1-120 233-354 (439)
165 3l82_B F-box only protein 4; T 99.4 3.4E-13 1.2E-17 95.0 5.0 106 2-121 108-223 (227)
166 2qtf_A Protein HFLX, GTP-bindi 99.4 2.1E-12 7.2E-17 98.4 8.2 113 1-124 231-357 (364)
167 2ged_A SR-beta, signal recogni 99.4 8.7E-13 3E-17 91.1 5.5 67 1-68 96-172 (193)
168 1f60_A Elongation factor EEF1A 99.3 2.2E-12 7.7E-17 101.0 6.4 101 1-111 90-202 (458)
169 4dcu_A GTP-binding protein ENG 99.3 5.9E-13 2E-17 104.2 3.1 102 1-121 76-185 (456)
170 3izq_1 HBS1P, elongation facto 99.3 1.5E-12 5.3E-17 105.1 5.3 99 1-111 250-362 (611)
171 2dy1_A Elongation factor G; tr 99.3 3.4E-12 1.2E-16 104.0 7.3 61 1-65 79-139 (665)
172 2aka_B Dynamin-1; fusion prote 99.3 3.3E-13 1.1E-17 99.5 1.0 105 1-118 130-250 (299)
173 2xtp_A GTPase IMAP family memb 99.3 2.8E-12 9.5E-17 93.1 4.9 110 1-121 76-208 (260)
174 2h5e_A Peptide chain release f 99.3 3E-11 1E-15 96.1 10.4 63 1-67 87-149 (529)
175 3l2o_B F-box only protein 4; s 99.3 7.7E-12 2.6E-16 92.0 6.1 107 2-121 193-308 (312)
176 3h2y_A GTPase family protein; 99.3 1.2E-11 4.2E-16 94.3 7.5 98 5-119 55-158 (368)
177 1dar_A EF-G, elongation factor 99.2 1.8E-11 6.1E-16 100.2 8.5 63 1-67 82-144 (691)
178 2qag_A Septin-2, protein NEDD5 99.2 3.8E-13 1.3E-17 102.4 -2.0 107 1-122 100-234 (361)
179 3mca_A HBS1, elongation factor 99.2 3.8E-12 1.3E-16 102.5 3.5 106 1-119 260-395 (592)
180 2rdo_7 EF-G, elongation factor 99.2 3.9E-11 1.3E-15 98.4 9.2 63 1-67 87-149 (704)
181 3ec1_A YQEH GTPase; atnos1, at 99.2 2.6E-11 8.9E-16 92.6 5.6 99 4-119 56-160 (369)
182 2xex_A Elongation factor G; GT 99.2 9E-11 3.1E-15 96.1 8.9 63 1-67 80-142 (693)
183 3lxx_A GTPase IMAP family memb 99.2 3.9E-11 1.3E-15 86.0 5.6 113 1-121 83-214 (239)
184 1pui_A ENGB, probable GTP-bind 99.1 1.8E-10 6.3E-15 80.4 7.4 109 1-122 77-200 (210)
185 2j69_A Bacterial dynamin-like 99.1 1.1E-10 3.8E-15 95.5 6.9 118 1-121 179-325 (695)
186 1udx_A The GTP-binding protein 99.1 4.4E-10 1.5E-14 87.0 9.4 109 1-124 210-328 (416)
187 3t5d_A Septin-7; GTP-binding p 99.1 2.4E-11 8.2E-16 89.0 1.2 87 20-120 116-203 (274)
188 3t34_A Dynamin-related protein 99.0 1.5E-11 5.2E-16 93.4 -0.9 101 1-115 141-255 (360)
189 3lxw_A GTPase IMAP family memb 99.0 4E-10 1.4E-14 81.4 6.3 110 1-121 75-208 (247)
190 1jwy_B Dynamin A GTPase domain 99.0 4.7E-11 1.6E-15 88.7 0.8 109 1-123 136-264 (315)
191 1yrb_A ATP(GTP)binding protein 99.0 6.1E-10 2.1E-14 80.5 6.3 113 1-120 114-256 (262)
192 2wsm_A Hydrogenase expression/ 99.0 1.5E-09 5.2E-14 76.4 7.6 86 19-122 129-215 (221)
193 1puj_A YLQF, conserved hypothe 99.0 8.2E-10 2.8E-14 81.4 5.6 98 3-120 6-105 (282)
194 2qnr_A Septin-2, protein NEDD5 98.9 5.7E-11 1.9E-15 88.3 -1.1 109 1-123 81-216 (301)
195 3p32_A Probable GTPase RV1496/ 98.9 5.6E-10 1.9E-14 84.7 4.1 101 1-121 177-284 (355)
196 3vqt_A RF-3, peptide chain rel 98.9 8E-09 2.7E-13 82.5 9.7 62 2-67 106-167 (548)
197 1n0u_A EF-2, elongation factor 98.8 2.1E-09 7.1E-14 89.7 3.0 62 1-66 103-164 (842)
198 2x2e_A Dynamin-1; nitration, h 98.8 3.6E-10 1.2E-14 85.6 -1.5 104 1-117 135-254 (353)
199 3def_A T7I23.11 protein; chlor 98.8 3.8E-09 1.3E-13 76.8 3.7 66 1-67 89-166 (262)
200 2qag_C Septin-7; cell cycle, c 98.8 3E-09 1E-13 82.4 3.2 94 13-120 130-226 (418)
201 1wxq_A GTP-binding protein; st 98.7 4E-09 1.4E-13 81.2 3.0 49 52-113 214-262 (397)
202 3j25_A Tetracycline resistance 98.7 9.4E-09 3.2E-13 83.5 4.6 118 2-123 73-241 (638)
203 2p67_A LAO/AO transport system 98.6 2E-08 6.7E-13 75.8 4.4 101 1-120 154-260 (341)
204 1h65_A Chloroplast outer envel 98.6 3.9E-08 1.3E-12 71.6 5.2 66 1-67 92-169 (270)
205 4fn5_A EF-G 1, elongation fact 98.6 3.3E-07 1.1E-11 75.3 9.7 61 2-66 91-151 (709)
206 2hf9_A Probable hydrogenase ni 98.6 1.1E-09 3.9E-14 77.3 -4.4 59 52-120 164-223 (226)
207 3cnl_A YLQF, putative uncharac 98.5 3.2E-08 1.1E-12 72.1 2.7 93 4-118 5-98 (262)
208 2www_A Methylmalonic aciduria 98.5 2.3E-07 7.7E-12 70.2 7.5 97 1-120 172-278 (349)
209 1t9h_A YLOQ, probable GTPase E 98.5 6E-08 2.1E-12 72.2 3.8 93 8-113 75-169 (307)
210 2qpt_A EH domain-containing pr 98.5 3E-08 1E-12 79.3 1.3 64 1-67 159-233 (550)
211 1jal_A YCHF protein; nucleotid 98.4 3.5E-06 1.2E-10 64.0 11.4 57 52-119 199-277 (363)
212 3zvr_A Dynamin-1; hydrolase, D 98.4 5.1E-08 1.8E-12 80.3 -0.1 104 1-117 155-274 (772)
213 2dby_A GTP-binding protein; GD 98.2 3.7E-06 1.3E-10 64.1 7.9 52 52-111 201-252 (368)
214 2rcn_A Probable GTPase ENGC; Y 98.1 2.8E-05 9.5E-10 59.0 9.4 87 16-115 127-213 (358)
215 2qm8_A GTPase/ATPase; G protei 98.0 1E-05 3.6E-10 60.8 5.9 99 1-120 153-260 (337)
216 4a9a_A Ribosome-interacting GT 96.5 0.011 3.8E-07 45.0 7.9 110 1-113 124-240 (376)
217 2j37_W Signal recognition part 96.1 0.0016 5.4E-08 51.6 1.2 97 1-118 189-310 (504)
218 2ohf_A Protein OLA1, GTP-bindi 95.4 0.0023 7.7E-08 49.2 -0.3 34 1-34 91-131 (396)
219 1ni3_A YCHF GTPase, YCHF GTP-b 94.6 0.15 5.2E-06 39.0 7.9 57 53-119 225-305 (392)
220 4dzz_A Plasmid partitioning pr 92.3 0.12 4.2E-06 34.9 3.6 59 2-65 82-143 (206)
221 1j8m_F SRP54, signal recogniti 92.2 0.16 5.5E-06 37.2 4.3 85 2-110 187-280 (297)
222 3dm5_A SRP54, signal recogniti 91.9 0.15 5.2E-06 39.6 4.0 68 18-108 211-278 (443)
223 2v3c_C SRP54, signal recogniti 90.9 0.087 3E-06 40.8 1.7 58 2-66 187-252 (432)
224 3cwq_A Para family chromosome 88.2 1.8 6.1E-05 29.6 6.7 49 14-65 85-133 (209)
225 2qag_B Septin-6, protein NEDD5 86.9 0.59 2E-05 36.1 3.8 41 22-67 151-191 (427)
226 3k9g_A PF-32 protein; ssgcid, 85.4 1.3 4.5E-05 31.2 4.8 48 14-63 161-208 (267)
227 3end_A Light-independent proto 83.2 9.1 0.00031 27.5 8.7 47 15-63 175-224 (307)
228 3kl4_A SRP54, signal recogniti 83.0 3 0.0001 32.2 6.2 67 19-108 211-277 (433)
229 3ec1_A YQEH GTPase; atnos1, at 82.4 0.033 1.1E-06 42.2 -5.0 75 18-108 244-318 (369)
230 3h2y_A GTPase family protein; 78.6 0.028 9.6E-07 42.5 -6.4 86 1-102 216-311 (368)
231 3kjh_A CO dehydrogenase/acetyl 74.4 14 0.00049 25.1 7.1 57 2-63 138-194 (254)
232 3sop_A Neuronal-specific septi 73.5 8.3 0.00029 27.5 5.8 47 16-67 108-155 (270)
233 1bif_A 6-phosphofructo-2-kinas 72.7 2.2 7.4E-05 33.1 2.7 55 1-59 92-156 (469)
234 3ea0_A ATPase, para family; al 72.6 7.2 0.00025 26.7 5.2 60 2-65 125-185 (245)
235 1tq4_A IIGP1, interferon-induc 72.4 5.9 0.0002 30.4 5.0 100 17-122 146-254 (413)
236 1wcv_1 SOJ, segregation protei 71.9 7.2 0.00025 27.2 5.1 60 2-65 118-182 (257)
237 2ph1_A Nucleotide-binding prot 71.9 4.1 0.00014 28.7 3.8 42 19-64 152-194 (262)
238 4a9a_A Ribosome-interacting GT 70.7 7.1 0.00024 29.6 5.0 50 52-119 249-298 (376)
239 3q9l_A Septum site-determining 68.1 6.4 0.00022 27.2 4.1 60 2-65 120-186 (260)
240 3pg5_A Uncharacterized protein 57.6 9.3 0.00032 28.4 3.5 36 86-122 304-348 (361)
241 4hs4_A Chromate reductase; tri 50.8 16 0.00054 24.8 3.5 67 16-94 70-140 (199)
242 2wkj_A N-acetylneuraminate lya 48.8 18 0.00061 26.3 3.7 38 19-57 106-143 (303)
243 1g3q_A MIND ATPase, cell divis 48.8 20 0.00068 24.3 3.8 49 14-65 128-176 (237)
244 1hyq_A MIND, cell division inh 47.8 34 0.0011 23.6 5.0 59 2-65 117-175 (263)
245 2fz5_A Flavodoxin; alpha/beta 44.3 23 0.00078 21.7 3.3 65 16-94 43-109 (137)
246 1t0i_A YLR011WP; FMN binding p 43.7 22 0.00075 23.4 3.3 65 16-94 81-145 (191)
247 2oze_A ORF delta'; para, walke 43.4 44 0.0015 23.5 5.1 48 16-65 173-225 (298)
248 4hhu_A OR280; engineered prote 42.9 60 0.0021 20.3 5.6 42 19-60 81-122 (170)
249 3szr_A Interferon-induced GTP- 42.4 7.8 0.00027 31.2 1.0 54 11-67 175-229 (608)
250 3e70_C DPA, signal recognition 41.7 44 0.0015 24.6 4.9 69 19-110 241-309 (328)
251 3u5c_H RP30, RP40, 40S ribosom 41.5 56 0.0019 22.2 4.9 45 22-66 57-101 (190)
252 1rtt_A Conserved hypothetical 40.6 15 0.00051 24.4 2.1 67 16-94 69-139 (193)
253 3gfs_A FMN-dependent NADPH-azo 40.6 37 0.0013 22.0 4.0 67 16-94 60-127 (174)
254 3eb2_A Putative dihydrodipicol 40.3 43 0.0015 24.2 4.7 37 19-57 99-135 (300)
255 2ffh_A Protein (FFH); SRP54, s 39.8 61 0.0021 24.8 5.6 61 19-101 210-271 (425)
256 3l21_A DHDPS, dihydrodipicolin 39.3 38 0.0013 24.6 4.2 38 19-58 110-147 (304)
257 3m5v_A DHDPS, dihydrodipicolin 39.1 39 0.0013 24.5 4.2 39 18-58 102-140 (301)
258 1xky_A Dihydrodipicolinate syn 38.5 41 0.0014 24.4 4.3 37 19-57 107-143 (301)
259 3qze_A DHDPS, dihydrodipicolin 38.4 40 0.0014 24.6 4.2 38 19-58 118-155 (314)
260 3tak_A DHDPS, dihydrodipicolin 38.4 41 0.0014 24.2 4.3 38 19-58 96-133 (291)
261 1zu4_A FTSY; GTPase, signal re 38.3 80 0.0027 23.0 5.9 61 19-101 227-288 (320)
262 3si9_A DHDPS, dihydrodipicolin 38.0 41 0.0014 24.6 4.2 38 19-58 117-154 (315)
263 2xxa_A Signal recognition part 37.8 59 0.002 24.9 5.2 58 2-66 190-254 (433)
264 3b4u_A Dihydrodipicolinate syn 37.6 27 0.00092 25.2 3.2 38 19-57 98-138 (294)
265 2yxg_A DHDPS, dihydrodipicolin 37.6 42 0.0014 24.1 4.2 37 19-57 95-131 (289)
266 2ehh_A DHDPS, dihydrodipicolin 37.6 43 0.0015 24.1 4.3 38 18-57 94-131 (294)
267 1ko7_A HPR kinase/phosphatase; 37.3 37 0.0013 24.9 3.9 38 82-120 93-130 (314)
268 1o5k_A DHDPS, dihydrodipicolin 37.3 44 0.0015 24.3 4.3 37 19-57 107-143 (306)
269 1s2d_A Purine trans deoxyribos 37.0 54 0.0019 21.6 4.4 39 16-59 78-116 (167)
270 3flu_A DHDPS, dihydrodipicolin 37.0 45 0.0015 24.1 4.3 38 19-58 102-139 (297)
271 2vc6_A MOSA, dihydrodipicolina 36.8 44 0.0015 24.0 4.2 38 18-57 94-131 (292)
272 3svl_A Protein YIEF; E. coli C 36.3 36 0.0012 22.7 3.5 67 16-94 69-139 (193)
273 1eiw_A Hypothetical protein MT 36.3 57 0.002 20.0 4.1 42 15-61 34-76 (111)
274 2afh_E Nitrogenase iron protei 36.1 1.1E+02 0.0037 21.4 6.9 44 18-63 142-188 (289)
275 2ark_A Flavodoxin; FMN, struct 36.1 38 0.0013 22.2 3.6 45 16-61 49-97 (188)
276 1cp2_A CP2, nitrogenase iron p 36.0 1E+02 0.0036 21.1 7.6 44 18-63 139-185 (269)
277 3cpr_A Dihydrodipicolinate syn 36.0 47 0.0016 24.1 4.3 37 19-57 111-147 (304)
278 2ojp_A DHDPS, dihydrodipicolin 35.9 47 0.0016 23.8 4.3 37 19-57 96-132 (292)
279 1w3i_A EDA, 2-keto-3-deoxy glu 35.8 50 0.0017 23.8 4.3 38 18-57 90-128 (293)
280 2xj4_A MIPZ; replication, cell 35.2 17 0.0006 25.7 1.8 62 2-66 110-192 (286)
281 2v9d_A YAGE; dihydrodipicolini 35.2 49 0.0017 24.5 4.3 37 19-57 126-162 (343)
282 3daq_A DHDPS, dihydrodipicolin 34.8 37 0.0013 24.4 3.6 38 19-58 97-134 (292)
283 4h08_A Putative hydrolase; GDS 34.5 78 0.0027 20.5 5.0 42 18-59 73-118 (200)
284 3cf4_G Acetyl-COA decarboxylas 33.4 71 0.0024 20.8 4.5 44 40-100 25-68 (170)
285 2rfg_A Dihydrodipicolinate syn 33.4 43 0.0015 24.2 3.7 37 19-57 95-131 (297)
286 3k1y_A Oxidoreductase; structu 33.4 38 0.0013 22.7 3.2 44 16-60 82-126 (191)
287 3fvw_A Putative NAD(P)H-depend 33.0 35 0.0012 22.7 3.0 66 16-94 64-140 (192)
288 2khz_A C-MYC-responsive protei 32.9 64 0.0022 21.0 4.2 41 16-63 74-114 (165)
289 3d0c_A Dihydrodipicolinate syn 32.7 44 0.0015 24.4 3.7 37 19-57 106-142 (314)
290 2f62_A Nucleoside 2-deoxyribos 32.3 54 0.0018 21.5 3.7 41 15-62 63-108 (161)
291 3ehd_A Uncharacterized conserv 31.7 80 0.0027 20.7 4.5 41 16-63 66-108 (162)
292 2r8w_A AGR_C_1641P; APC7498, d 31.6 46 0.0016 24.5 3.7 37 19-57 129-165 (332)
293 3r6w_A FMN-dependent NADH-azor 31.5 44 0.0015 22.4 3.4 74 16-95 84-177 (212)
294 2vzf_A NADH-dependent FMN redu 31.2 27 0.00091 23.3 2.2 44 16-60 66-110 (197)
295 2a5l_A Trp repressor binding p 31.2 47 0.0016 21.7 3.4 68 16-94 68-140 (200)
296 2nuw_A 2-keto-3-deoxygluconate 30.9 51 0.0017 23.6 3.7 37 19-57 91-128 (288)
297 3kht_A Response regulator; PSI 30.9 88 0.003 18.7 8.0 21 41-61 68-90 (144)
298 2r91_A 2-keto-3-deoxy-(6-phosp 30.7 51 0.0017 23.6 3.7 38 18-57 89-127 (286)
299 3lcm_A SMU.1420, putative oxid 30.7 52 0.0018 21.9 3.5 46 16-62 70-129 (196)
300 2hmc_A AGR_L_411P, dihydrodipi 30.7 55 0.0019 24.3 3.9 40 19-60 118-158 (344)
301 1rli_A Trp repressor binding p 30.3 33 0.0011 22.2 2.4 69 16-94 68-148 (184)
302 2rdm_A Response regulator rece 30.2 63 0.0021 18.9 3.7 40 19-63 50-90 (132)
303 1t5b_A Acyl carrier protein ph 30.1 38 0.0013 22.2 2.8 70 16-94 83-166 (201)
304 4hhu_A OR280; engineered prote 29.4 1.1E+02 0.0036 19.2 5.6 69 22-94 3-71 (170)
305 3ezx_A MMCP 1, monomethylamine 29.3 84 0.0029 21.4 4.5 41 19-60 143-185 (215)
306 1uoz_A Putative cellulase; hyd 29.2 64 0.0022 23.8 3.9 39 20-59 90-138 (315)
307 3na8_A Putative dihydrodipicol 29.2 55 0.0019 23.9 3.7 38 19-58 119-156 (315)
308 1f8y_A Nucleoside 2-deoxyribos 27.9 62 0.0021 21.0 3.4 41 16-61 75-115 (157)
309 3h5i_A Response regulator/sens 27.2 68 0.0023 19.2 3.5 39 19-63 50-89 (140)
310 3p04_A Uncharacterized BCR; SE 27.2 92 0.0032 18.2 3.7 30 32-65 12-41 (87)
311 1d4a_A DT-diaphorase, quinone 26.8 69 0.0024 22.6 3.8 45 17-62 91-149 (273)
312 1zpw_X Hypothetical protein TT 26.5 91 0.0031 18.1 3.7 17 22-38 5-21 (90)
313 3e96_A Dihydrodipicolinate syn 26.3 50 0.0017 24.1 3.0 38 19-58 106-143 (316)
314 1fxw_F Alpha2, platelet-activa 26.1 1.5E+02 0.005 19.7 5.4 42 19-60 94-139 (229)
315 1sqs_A Conserved hypothetical 25.9 1.6E+02 0.0054 20.0 7.3 66 16-94 76-146 (242)
316 3h5d_A DHDPS, dihydrodipicolin 25.8 87 0.003 22.8 4.2 38 19-58 102-140 (311)
317 2pcq_A Putative dihydrodipicol 25.7 43 0.0015 24.0 2.5 35 19-57 88-123 (283)
318 3eqz_A Response regulator; str 25.6 1.1E+02 0.0036 17.9 4.6 37 20-61 47-83 (135)
319 3u7r_A NADPH-dependent FMN red 25.6 74 0.0025 21.3 3.6 44 16-60 64-112 (190)
320 2xzm_U Ribosomal protein L7AE 25.4 82 0.0028 19.7 3.5 41 19-65 40-80 (126)
321 3bfv_A CAPA1, CAPB2, membrane 25.3 95 0.0032 21.8 4.3 45 17-65 212-257 (271)
322 5nul_A Flavodoxin; electron tr 25.3 79 0.0027 19.3 3.5 65 16-94 42-108 (138)
323 3a5f_A Dihydrodipicolinate syn 24.9 45 0.0016 23.9 2.5 37 19-57 96-132 (291)
324 1f6k_A N-acetylneuraminate lya 24.6 73 0.0025 22.9 3.6 37 19-57 99-135 (293)
325 3f6c_A Positive transcription 24.3 92 0.0032 18.2 3.7 40 19-63 46-85 (134)
326 3s2y_A Chromate reductase; ura 29.6 17 0.00057 24.6 0.0 44 16-60 70-117 (199)
327 3rl5_A Metallophosphoesterase 23.6 51 0.0018 23.9 2.6 46 17-64 77-122 (296)
328 3fkr_A L-2-keto-3-deoxyarabona 23.3 65 0.0022 23.4 3.1 59 19-92 103-164 (309)
329 3ez9_A Para; DNA binding, wing 23.2 86 0.0029 23.3 3.9 48 15-63 265-321 (403)
330 2hpv_A FMN-dependent NADH-azor 22.9 85 0.0029 20.7 3.5 68 16-94 91-172 (208)
331 3dz1_A Dihydrodipicolinate syn 22.3 68 0.0023 23.3 3.1 37 19-57 102-139 (313)
332 3ha2_A NADPH-quinone reductase 22.2 1.3E+02 0.0044 19.8 4.3 45 16-61 48-101 (177)
333 3b6i_A Flavoprotein WRBA; flav 22.1 50 0.0017 21.6 2.2 47 15-62 64-115 (198)
334 3exc_X Uncharacterized protein 21.9 1.3E+02 0.0044 17.6 3.8 17 22-38 5-21 (91)
335 4dad_A Putative pilus assembly 21.9 1.4E+02 0.0047 17.8 4.9 76 18-121 66-141 (146)
336 2gkg_A Response regulator homo 21.7 1.1E+02 0.0038 17.4 3.6 38 19-62 49-89 (127)
337 1dbw_A Transcriptional regulat 21.5 1.3E+02 0.0044 17.4 4.5 20 43-62 66-85 (126)
338 2q62_A ARSH; alpha/beta, flavo 21.5 59 0.002 22.8 2.5 66 16-94 95-166 (247)
339 3skv_A SSFX3; jelly roll, GDSL 21.2 99 0.0034 23.2 3.9 43 19-61 244-292 (385)
340 2zki_A 199AA long hypothetical 21.2 72 0.0024 20.9 2.8 71 16-98 67-142 (199)
341 1ytl_A Acetyl-COA decarboxylas 21.1 1.1E+02 0.0039 20.2 3.8 39 43-100 29-67 (174)
342 2pd2_A Hypothetical protein ST 21.0 1.3E+02 0.0046 17.5 4.9 36 25-61 3-38 (108)
343 3pzx_A Formate--tetrahydrofola 21.0 79 0.0027 25.2 3.2 56 52-120 374-429 (557)
344 4ici_A Putative flavoprotein; 20.9 1.2E+02 0.0042 19.5 3.9 44 16-62 84-127 (171)
345 3dci_A Arylesterase; SGNH_hydr 20.9 1.9E+02 0.0064 19.2 5.0 83 19-103 101-199 (232)
346 3p7m_A Malate dehydrogenase; p 20.5 1.1E+02 0.0038 22.3 3.9 50 15-64 69-127 (321)
347 3uc9_A Increased recombination 20.5 31 0.0011 24.3 0.9 36 21-60 104-139 (233)
348 2yvt_A Hypothetical protein AQ 20.4 1.6E+02 0.0056 19.8 4.7 17 18-34 31-47 (260)
349 4fyk_A Deoxyribonucleoside 5'- 20.4 1.3E+02 0.0046 19.4 3.9 38 16-60 65-102 (152)
350 3hv2_A Response regulator/HD d 20.3 1.5E+02 0.0053 17.9 4.3 38 19-61 58-95 (153)
351 1oju_A MDH, malate dehydrogena 20.3 1.2E+02 0.004 21.9 3.9 51 14-64 64-123 (294)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.96 E-value=4.8e-30 Score=183.35 Aligned_cols=109 Identities=27% Similarity=0.486 Sum_probs=100.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||||+|..+++.|+++++++++|||++++.||+.+ ..|+..+.... +++|++|||||+|+.+.+.
T Consensus 67 wDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i-~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~---------- 135 (216)
T 4dkx_A 67 WDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ---------- 135 (216)
T ss_dssp ECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGCC----------
T ss_pred EECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHH-HHHHHHHHHhcCCCCeEEEEeeccchHhcCc----------
Confidence 99999999999999999999999999999999999998 89988887665 6899999999999987654
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
|..+++..+++.+++ +|+++||++|.||+++|+.|++.+..
T Consensus 136 V~~~e~~~~a~~~~~-~~~e~SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 136 VSIEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp SCHHHHHHHHHHHTC-EEEEEBTTTTBSHHHHHHHHHHHC--
T ss_pred ccHHHHhhHHHHhCC-eeEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 589999999999998 89999999999999999999998854
No 2
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.93 E-value=1.4e-25 Score=158.57 Aligned_cols=138 Identities=69% Similarity=1.134 Sum_probs=101.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||+++|..+++.+++++|++|+|||++++.+++.+...|+..+....++.|+++|+||+|+......... ....+
T Consensus 62 ~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~v 139 (212)
T 2j0v_A 62 WDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLAD--HTNVI 139 (212)
T ss_dssp ECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHT--CSSCC
T ss_pred EECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcccccc--ccCCC
Confidence 8999999999999999999999999999999999999844899999888788999999999999764321000 11134
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcchh----hhhccCCCceeee
Q 031970 81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQK----EKKKKQRGCLLNV 140 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~----~~~~~~~~c~~~~ 140 (150)
..+++..+++.++..+++++||+++.|++++|+.+++.+......++ +.+++.+.|.++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 203 (212)
T 2j0v_A 140 TSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEVPRRRKNHRRSGCSIAS 203 (212)
T ss_dssp CHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC----------------------
T ss_pred CHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhhhhcccccccccccCCCcEEeh
Confidence 67888899999986699999999999999999999999987655443 2233445677763
No 3
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.91 E-value=1.1e-24 Score=150.76 Aligned_cols=126 Identities=30% Similarity=0.545 Sum_probs=98.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..+++.+++.+|++++|||++++.+++.+ ..|...+.... .+.|+++|+||+|+....
T Consensus 57 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~---------- 125 (189)
T 4dsu_A 57 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPSRT---------- 125 (189)
T ss_dssp EECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTSSSCS----------
T ss_pred EECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccCcccc----------
Confidence 89999999999999999999999999999999999998 88988887754 479999999999997533
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc-----chhhhhccCCCceee
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ-----KQKEKKKKQRGCLLN 139 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~-----~~~~~~~~~~~c~~~ 139 (150)
+..+.+..+++.+++ +++++||+++.|++++|+.+++.+..... ..+++++++.+|.||
T Consensus 126 -~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~kk~~~~c~i~ 189 (189)
T 4dsu_A 126 -VDTKQAQDLARSYGI-PFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKSKTKCVIM 189 (189)
T ss_dssp -SCHHHHHHHHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHHHHHHHHHCSSTTCCC--------
T ss_pred -cCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcccccccccccccceeeeC
Confidence 377888999999997 99999999999999999999998865332 122334445567664
No 4
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.91 E-value=2e-24 Score=151.53 Aligned_cols=109 Identities=28% Similarity=0.492 Sum_probs=99.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC--CCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~--~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..++..+++.+|++++|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.....
T Consensus 67 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------- 136 (206)
T 2bov_A 67 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ--------- 136 (206)
T ss_dssp EECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTCGGGCC---------
T ss_pred EcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccCcccccc---------
Confidence 89999999999999999999999999999999999998 899988887764 799999999999976543
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+..+++..+++.+++ +++++||++|.|++++|+.+++.+..
T Consensus 137 -~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 137 -VSVEEAKNRAEQWNV-NYVETSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp -SCHHHHHHHHHHHTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHhCC-eEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 477888999999997 99999999999999999999988864
No 5
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.91 E-value=3e-24 Score=150.73 Aligned_cols=123 Identities=28% Similarity=0.481 Sum_probs=99.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .++|+++|+||+|+.....
T Consensus 77 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------- 146 (201)
T 3oes_A 77 VDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGNKADLSPERE--------- 146 (201)
T ss_dssp EEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHH-HHHHHHHHC-----CCCEEEEEECTTCGGGCC---------
T ss_pred EECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCccccc---------
Confidence 89999999999999999999999999999999999998 89998887763 4789999999999986544
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcchhhhhccCCCceee
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLN 139 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~c~~~ 139 (150)
+...++..+++.+++ +++++||+++.|++++|+.|++.+....... .++.+|.+|
T Consensus 147 -v~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~~~----~~~~~c~l~ 201 (201)
T 3oes_A 147 -VQAVEGKKLAESWGA-TFMESSARENQLTQGIFTKVIQEIARVENSY----GQERRCHLM 201 (201)
T ss_dssp -SCHHHHHHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHHHHHC-----------------
T ss_pred -cCHHHHHHHHHHhCC-eEEEEeCCCCCCHHHHHHHHHHHHHhhhhhh----ccccccccC
Confidence 477888999999998 9999999999999999999999998664332 224446654
No 6
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.91 E-value=9.1e-24 Score=147.34 Aligned_cols=116 Identities=39% Similarity=0.727 Sum_probs=103.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+...|+..+....++.|+++|+||+|+..... ..+
T Consensus 76 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--------~~~ 147 (194)
T 3reg_A 76 WDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGS--------DDV 147 (194)
T ss_dssp EEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTT--------TCC
T ss_pred EECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCC--------Ccc
Confidence 899999999999999999999999999999999999965789999988878899999999999975321 235
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031970 81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 124 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 124 (150)
..+++..+++.+++..++++||++|.|++++|+.+++.+...+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 148 TKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNKP 191 (194)
T ss_dssp CHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCSCC
T ss_pred cHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhcCC
Confidence 78899999999998459999999999999999999999987643
No 7
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.91 E-value=5.9e-24 Score=151.01 Aligned_cols=124 Identities=32% Similarity=0.613 Sum_probs=103.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~ 78 (150)
|||+|+++|..+++.+++++|++|+|||++++.+++.++..|+..+....++.|+++|+||+|+........ .+....
T Consensus 80 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 159 (214)
T 3q3j_B 80 WDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQA 159 (214)
T ss_dssp EEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCC
T ss_pred EECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccC
Confidence 899999999999999999999999999999999999944899999998888999999999999976311000 000112
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCC-HHHHHHHHHHHHhCCCc
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSKTQQN-VKAVFDAAIKVVIKPPQ 124 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~~~~~l~~~~~~~~~ 124 (150)
.+..+++..+++.+++.+++++||+++.| |+++|+.+++.+.....
T Consensus 160 ~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 160 PISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp CCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred ccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence 35888999999999977999999999998 99999999999987643
No 8
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.91 E-value=5.6e-24 Score=146.79 Aligned_cols=110 Identities=25% Similarity=0.518 Sum_probs=85.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+...
T Consensus 62 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~---------- 130 (183)
T 2fu5_C 62 WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ---------- 130 (183)
T ss_dssp EEC---------CCTTTTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSCCC----------
T ss_pred EcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccCCccCc----------
Confidence 89999999999999999999999999999999999998 88999888764 5799999999999976433
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
+..+++..+++.+++ +++++||+++.|++++|+.+++.+...
T Consensus 131 v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 131 VSKERGEKLALDYGI-KFMETSAKANINVENAFFTLARDIKAK 172 (183)
T ss_dssp SCHHHHHHHHHHHTC-EEEECCC---CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 477888999999997 999999999999999999999998754
No 9
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.91 E-value=9.5e-24 Score=145.26 Aligned_cols=122 Identities=76% Similarity=1.265 Sum_probs=100.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||+++|..++..+++++|++++|||++++.+++.+...|+..+....++.|+++|+||+|+.+.............+
T Consensus 61 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v 140 (182)
T 3bwd_D 61 WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPI 140 (182)
T ss_dssp ECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCC
T ss_pred EECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCC
Confidence 89999999999999999999999999999999999998337999998877789999999999987643210001111234
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
..+++..+++.++..+++++||+++.|++++|+.+++.++++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 182 (182)
T 3bwd_D 141 TTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQP 182 (182)
T ss_dssp CHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHhcC
Confidence 678888999999866999999999999999999999988753
No 10
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.90 E-value=2.6e-23 Score=143.37 Aligned_cols=124 Identities=53% Similarity=0.898 Sum_probs=103.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~ 78 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+...|+..+....++.|+++|+||+|+........ ......
T Consensus 58 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 137 (186)
T 1mh1_A 58 WDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 137 (186)
T ss_dssp ECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCC
T ss_pred EECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccc
Confidence 899999999999999999999999999999999999983379999988777899999999999976421000 000112
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 124 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 124 (150)
.+..+++..+++.++..+++++||++|.|++++|+.+++.+.+++.
T Consensus 138 ~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 183 (186)
T 1mh1_A 138 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 183 (186)
T ss_dssp CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCCCC
T ss_pred cCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhcccc
Confidence 3577888899999886699999999999999999999999987654
No 11
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.90 E-value=2.2e-23 Score=143.53 Aligned_cols=113 Identities=25% Similarity=0.374 Sum_probs=99.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..++..+++++|++++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.....
T Consensus 59 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--------- 128 (181)
T 3t5g_A 59 VDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV--------- 128 (181)
T ss_dssp EECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHC----CCEEEEEECTTCTTTCC---------
T ss_pred EeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcce---------
Confidence 89999999999999999999999999999999999998 88988887664 4799999999999876543
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcc
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQK 125 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 125 (150)
+..+++..+++.+++ +++++||+++.|++++|+.+++.+......
T Consensus 129 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 173 (181)
T 3t5g_A 129 -ISYEEGKALAESWNA-AFLESSAKENQTAVDVFRRIILEAEKMDGA 173 (181)
T ss_dssp -SCHHHHHHHHHHTTC-EEEECCTTSHHHHHHHHHHHHHHHHTC---
T ss_pred -ecHHHHHHHHHHhCC-cEEEEecCCCCCHHHHHHHHHHHHHHhcCC
Confidence 478899999999998 999999999999999999999999876543
No 12
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.90 E-value=2e-23 Score=143.20 Aligned_cols=110 Identities=29% Similarity=0.503 Sum_probs=101.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+....++.|+++|+||+|+.+... +
T Consensus 63 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~ 131 (181)
T 3tw8_B 63 WDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPERKV----------V 131 (181)
T ss_dssp EEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHCTTSEEEEEEECTTCGGGCC----------S
T ss_pred EcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCCCchhcc----------c
Confidence 89999999999999999999999999999999999998 899999998888899999999999877554 3
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
...+...++...++ +++++||+++.|++++|+.+.+.+...
T Consensus 132 ~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 132 ETEDAYKFAGQMGI-QLFETSAKENVNVEEMFNCITELVLRA 172 (181)
T ss_dssp CHHHHHHHHHHHTC-CEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 77888899999997 999999999999999999999988754
No 13
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=5.2e-23 Score=143.35 Aligned_cols=122 Identities=48% Similarity=0.903 Sum_probs=102.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccc--cCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL--ADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~ 78 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+...|+..+....++.|+++|+||+|+....... -.....+
T Consensus 71 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 150 (194)
T 2atx_A 71 YDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEK 150 (194)
T ss_dssp ECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCC
T ss_pred EECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCc
Confidence 89999999999999999999999999999999999998338999998877789999999999997642100 0001112
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
.+..+++..+++.++..+++++||+++.|++++|+.+++.++.+
T Consensus 151 ~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~p 194 (194)
T 2atx_A 151 PICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP 194 (194)
T ss_dssp CCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHhcC
Confidence 35788899999999876899999999999999999999988753
No 14
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.90 E-value=2.1e-23 Score=146.65 Aligned_cols=111 Identities=28% Similarity=0.478 Sum_probs=100.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||+|+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.....
T Consensus 83 ~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~---------- 151 (201)
T 2hup_A 83 WDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSELRE---------- 151 (201)
T ss_dssp ECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------
T ss_pred EECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCccccccc----------
Confidence 89999999999999999999999999999999999998 89999988766 5799999999999976543
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
+..+++..+++.+++.+++++||+++.||+++|+.|++.+..+
T Consensus 152 v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 152 VSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR 194 (201)
T ss_dssp SCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 4778889999999876899999999999999999999988753
No 15
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.90 E-value=4.5e-23 Score=144.40 Aligned_cols=122 Identities=45% Similarity=0.768 Sum_probs=101.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~ 78 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+...|+..+....++.|+++|+||+|+........ ......
T Consensus 73 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~ 152 (201)
T 2q3h_A 73 CDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEK 152 (201)
T ss_dssp EECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCC
T ss_pred EECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccc
Confidence 899999999999999999999999999999999999983379999988878899999999999976321000 000112
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
.+..+++..+++.++..+++++||+++.|++++|+.+++.+.++
T Consensus 153 ~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 153 PVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp CCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 35778889999998866899999999999999999999988753
No 16
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=9.9e-24 Score=147.20 Aligned_cols=109 Identities=24% Similarity=0.421 Sum_probs=95.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccccccccCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGL 77 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~ 77 (150)
|||||+++|..++..+++.+|++|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+....
T Consensus 61 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~--------- 130 (199)
T 2gf0_A 61 TDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEEL-GPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE--------- 130 (199)
T ss_dssp EECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTT-HHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS---------
T ss_pred EeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccCCccc---------
Confidence 89999999999999999999999999999999999987 67776666543 478999999999987532
Q ss_pred CccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 78 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
+...++..+++.+++ +++++||+++.|++++|+.+++.+...
T Consensus 131 --~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 131 --VDTREAQAVAQEWKC-AFMETSAKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp --SCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred --cCHHHHHHHHHHhCC-eEEEEecCCCCCHHHHHHHHHHHHhhh
Confidence 367788888999997 999999999999999999999988654
No 17
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.89 E-value=4.3e-23 Score=141.50 Aligned_cols=111 Identities=22% Similarity=0.303 Sum_probs=98.1
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCC-EEEEeeCCCcccccccccCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVP-VVLVGTKLDLREDKHYLADHPG 76 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~p-iilv~nK~D~~~~~~~~~~~~~ 76 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.| +++|+||+|+.+...
T Consensus 61 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~------- 132 (178)
T 2hxs_A 61 WDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKIDLEHMRT------- 132 (178)
T ss_dssp EECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCS-------
T ss_pred EECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHH-HHHHHHHHHHhcccCCCCeEEEEEEccccccccc-------
Confidence 89999999999999999999999999999999999998 88988887643 2456 899999999976543
Q ss_pred CCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970 77 LVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
+..+++..+++..++ +++++||+++.|++++|+.+++.+.+.+
T Consensus 133 ---~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 133 ---IKPEKHLRFCQENGF-SSHFVSAKTGDSVFLCFQKVAAEILGIK 175 (178)
T ss_dssp ---SCHHHHHHHHHHHTC-EEEEECTTTCTTHHHHHHHHHHHHTTCC
T ss_pred ---cCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 367888899999997 9999999999999999999999998754
No 18
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.89 E-value=4.7e-23 Score=142.72 Aligned_cols=121 Identities=36% Similarity=0.660 Sum_probs=100.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~ 78 (150)
|||||+++|..+++.+++++|++|+|||++++.+++.+...|+..+....++.|+++|+||+|+.+...... .+....
T Consensus 60 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 139 (184)
T 1m7b_A 60 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQT 139 (184)
T ss_dssp EEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCC
T ss_pred EECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccC
Confidence 899999999999999999999999999999999999875689998888778899999999999975311000 001123
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccC-CCCCHHHHHHHHHHHHhC
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSK-TQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~~~~~l~~~~~~ 121 (150)
.+..+++..+++.++..+++++||+ ++.|++++|+.+++.++.
T Consensus 140 ~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 140 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp CCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 4678889999999885599999999 689999999999998864
No 19
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.89 E-value=6.4e-23 Score=139.54 Aligned_cols=109 Identities=27% Similarity=0.469 Sum_probs=92.4
Q ss_pred CCCCCcccccc-cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC--CCCEEEEeeCCCcccccccccCCCCC
Q 031970 1 MNVIGQEDYNR-LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGTKLDLREDKHYLADHPGL 77 (150)
Q Consensus 1 wDt~G~e~~~~-l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~--~~piilv~nK~D~~~~~~~~~~~~~~ 77 (150)
|||+|++++.. ++..+++.+|++++|||++++.+++.+ ..|+..+....+ +.|+++|+||+|+.+...
T Consensus 56 ~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-------- 126 (169)
T 3q85_A 56 YDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE-------- 126 (169)
T ss_dssp ECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCGGGCC--------
T ss_pred EECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHH-HHHHHHHHhcccCCCCCEEEEeeCcchhhccc--------
Confidence 89999999976 788889999999999999999999998 889888887664 799999999999976544
Q ss_pred CccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 78 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+..+++..+++.+++ +++++||+++.|++++|+.+++.+..
T Consensus 127 --~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 127 --VSLEEGRHLAGTLSC-KHIETSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp --SCHHHHHHHHHHTTC-EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHcCC-cEEEecCccCCCHHHHHHHHHHHHHh
Confidence 488899999999998 99999999999999999999998764
No 20
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.89 E-value=1e-22 Score=138.19 Aligned_cols=109 Identities=23% Similarity=0.411 Sum_probs=83.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||+|+++|..+++.+++.+|++++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+...
T Consensus 54 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--------- 123 (166)
T 3q72_A 54 YDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSRE--------- 123 (166)
T ss_dssp EECC---------------CCEEEEEEETTCHHHHHHH-HHHHHHHHHCC---CCCEEEEEECTTCCSSCC---------
T ss_pred EECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccccccccc---------
Confidence 89999999999999999999999999999999999998 88888887653 5799999999999976544
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+..++...++...++ +++++||++|.|++++|+.+++.+..
T Consensus 124 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 124 -VSVDEGRACAVVFDC-KFIETSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp -SCHHHHHHHHHHTTC-EEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHhCC-cEEEeccCCCCCHHHHHHHHHHHHHh
Confidence 478888899999997 99999999999999999999998753
No 21
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.4e-22 Score=144.53 Aligned_cols=112 Identities=27% Similarity=0.476 Sum_probs=97.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..++..+++.+|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.....
T Consensus 67 ~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~---------- 135 (223)
T 3cpj_B 67 WDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAHLRA---------- 135 (223)
T ss_dssp ECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHH-HHHHHHHHHHCC--CEEEEEECCGGGGGGCC----------
T ss_pred EECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------
Confidence 89999999999999999999999999999999999998 89999888765 4799999999999976543
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 124 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 124 (150)
+...++..+++..++ +++++||+++.||+++|+.|++.+.+...
T Consensus 136 v~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 179 (223)
T 3cpj_B 136 VPTEESKTFAQENQL-LFTETSALNSENVDKAFEELINTIYQKVS 179 (223)
T ss_dssp SCHHHHHHHHHHTTC-EEEECCCC-CCCHHHHHHHHHHHHTTCC-
T ss_pred cCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 467888899999997 99999999999999999999999986544
No 22
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.89 E-value=9.2e-23 Score=140.19 Aligned_cols=111 Identities=33% Similarity=0.618 Sum_probs=98.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..++..+++.+|++|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.....
T Consensus 66 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~---------- 134 (181)
T 2efe_B 66 WDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLLDARK---------- 134 (181)
T ss_dssp EECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------
T ss_pred EeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCccccccc----------
Confidence 89999999999999999999999999999999999998 89998888765 5799999999999976443
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
+..+++..+++..++ +++++||+++.|++++|+.|++.+...+
T Consensus 135 ~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 135 VTAEDAQTYAQENGL-FFMETSAKTATNVKEIFYEIARRLPRVQ 177 (181)
T ss_dssp SCHHHHHHHHHHTTC-EEEECCSSSCTTHHHHHHHHHHTCC---
T ss_pred CCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 477888899999997 9999999999999999999999886654
No 23
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.89 E-value=9.8e-23 Score=138.62 Aligned_cols=109 Identities=27% Similarity=0.553 Sum_probs=91.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..++..+++++|++++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+...
T Consensus 60 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---------- 128 (170)
T 1z08_A 60 WDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERH---------- 128 (170)
T ss_dssp EECCCC-------CCSSTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGGCC----------
T ss_pred EECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccc----------
Confidence 89999999999999999999999999999999999998 89988887654 4799999999999976543
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+..+++..+++..++ +++++||+++.|++++|+.+++.+.+
T Consensus 129 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 129 VSIQEAESYAESVGA-KHYHTSAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp SCHHHHHHHHHHTTC-EEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHhh
Confidence 377888899999997 99999999999999999999998764
No 24
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.89 E-value=8.3e-23 Score=143.17 Aligned_cols=110 Identities=26% Similarity=0.446 Sum_probs=97.8
Q ss_pred CCCCCcccccc-cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCC
Q 031970 1 MNVIGQEDYNR-LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGL 77 (150)
Q Consensus 1 wDt~G~e~~~~-l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~ 77 (150)
|||+|++++.. +++.+++++|++|+|||++++.+|+.+ ..|+..+.... .++|+++|+||+|+.....
T Consensus 77 ~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-------- 147 (195)
T 3cbq_A 77 YDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE-------- 147 (195)
T ss_dssp ECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCTTTCC--------
T ss_pred EecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeechhccccCC--------
Confidence 89999998875 888899999999999999999999998 88998887765 4799999999999976443
Q ss_pred CccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 78 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
+..+++..+++.+++ +++++||+++.|++++|+.+++.+...
T Consensus 148 --v~~~~~~~~a~~~~~-~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 148 --VSLEEGRHLAGTLSC-KHIETSAALHHNTRELFEGAVRQIRLR 189 (195)
T ss_dssp --SCHHHHHHHHHHTTC-EEEEEBTTTTBSHHHHHHHHHHHHHTT
T ss_pred --cCHHHHHHHHHHhCC-EEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 477888899999997 999999999999999999999998754
No 25
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.89 E-value=8.1e-23 Score=144.99 Aligned_cols=122 Identities=42% Similarity=0.831 Sum_probs=87.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~ 78 (150)
|||||+++|..+++.+++++|++|+|||++++.+++.+...|+..+....+++|+++|+||+|+........ ......
T Consensus 87 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 166 (214)
T 2j1l_A 87 WDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLE 166 (214)
T ss_dssp EEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCC
T ss_pred EECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccC
Confidence 899999999999999999999999999999999999984479999988778899999999999976431000 000012
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
.+..+++..+++.++..+++++||++|.|++++|+.+++.+.+.
T Consensus 167 ~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 167 PVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp CCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 35778889999999866999999999999999999999998754
No 26
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.89 E-value=1.2e-22 Score=137.79 Aligned_cols=109 Identities=28% Similarity=0.491 Sum_probs=98.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||+++|..++..+++.+|++++|||++++.+++.+ ..|+..+....++.|+++|+||+|+.+... +
T Consensus 59 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~----------~ 127 (168)
T 1z2a_A 59 WDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDDSC----------I 127 (168)
T ss_dssp ECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGGCS----------S
T ss_pred EcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccCcccc----------c
Confidence 89999999999999999999999999999999999998 889988877667899999999999976543 3
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
..+++..+++.+++ +++++||+++.|++++|+.+.+.+.+
T Consensus 128 ~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 128 KNEEAEGLAKRLKL-RFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp CHHHHHHHHHHHTC-EEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 67888899999997 99999999999999999999998864
No 27
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.89 E-value=2e-22 Score=140.33 Aligned_cols=109 Identities=26% Similarity=0.531 Sum_probs=99.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.....
T Consensus 75 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~---------- 143 (191)
T 2a5j_A 75 WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRD---------- 143 (191)
T ss_dssp ECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------
T ss_pred EECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCCccc----------
Confidence 89999999999999999999999999999999999998 88998888764 5799999999999976443
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+..+++..+++.+++ +++++||+++.|++++|+.|++.+.+
T Consensus 144 v~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 144 VKREEGEAFAREHGL-IFMETSAKTACNVEEAFINTAKEIYR 184 (191)
T ss_dssp SCHHHHHHHHHHHTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 477888899999997 99999999999999999999998874
No 28
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.89 E-value=7.7e-23 Score=142.21 Aligned_cols=108 Identities=24% Similarity=0.424 Sum_probs=93.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCCcccccccccCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPG 76 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~D~~~~~~~~~~~~~ 76 (150)
|||+|+++|..+ ..+++.+|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.....
T Consensus 74 ~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~------- 144 (187)
T 3c5c_A 74 MDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLGNKLDMAQYRQ------- 144 (187)
T ss_dssp EECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCS-------
T ss_pred EECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHH-HHHHHHHHHHhhccCCCCCEEEEEECcchhhcCc-------
Confidence 899999999886 6799999999999999999999998 88998888763 5899999999999976543
Q ss_pred CCccCHHHHHHHHHHcCCcEEEEecc-CCCCCHHHHHHHHHHHHhC
Q 031970 77 LVPVTTAQGEELRKQIGASYYIECSS-KTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i~~~~~~l~~~~~~ 121 (150)
+..+++..+++.+++ +++++|| +++.||+++|+.+++.+.+
T Consensus 145 ---v~~~~~~~~~~~~~~-~~~e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 145 ---VTKAEGVALAGRFGC-LFFEVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp ---SCHHHHHHHHHHHTC-EEEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred ---cCHHHHHHHHHHcCC-cEEEEeecCccccHHHHHHHHHHHHhh
Confidence 477889999999998 9999999 8999999999999998754
No 29
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.89 E-value=2.2e-22 Score=141.48 Aligned_cols=110 Identities=24% Similarity=0.473 Sum_probs=99.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.....
T Consensus 62 ~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~---------- 130 (206)
T 2bcg_Y 62 WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKRV---------- 130 (206)
T ss_dssp ECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------
T ss_pred EeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------
Confidence 89999999999999999999999999999999999998 88998888765 5799999999999976543
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
+..+++..++...++ +++++||+++.|++++|+.+++.+.+.
T Consensus 131 ~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 131 VEYDVAKEFADANKM-PFLETSALDSTNVEDAFLTMARQIKES 172 (206)
T ss_dssp SCHHHHHHHHHHTTC-CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 367888889999997 999999999999999999999988643
No 30
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=1.6e-22 Score=138.82 Aligned_cols=110 Identities=30% Similarity=0.584 Sum_probs=91.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.....
T Consensus 65 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~---------- 133 (180)
T 2g6b_A 65 WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSAHERV---------- 133 (180)
T ss_dssp EECCCC--------CCGGGCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECCSTTSCCC----------
T ss_pred EeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccCcccc----------
Confidence 89999999999999999999999999999999999998 89998888766 5799999999999976543
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
+..++...+++.+++ +++++||+++.|++++|+.+.+.+.+.
T Consensus 134 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 134 VKREDGEKLAKEYGL-PFMETSAKTGLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp SCHHHHHHHHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 367788889999997 999999999999999999999988754
No 31
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=5.1e-23 Score=145.08 Aligned_cols=109 Identities=29% Similarity=0.574 Sum_probs=98.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+...
T Consensus 80 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~---------- 148 (201)
T 2ew1_A 80 WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAERRE---------- 148 (201)
T ss_dssp EEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCS----------
T ss_pred EECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------
Confidence 89999999999999999999999999999999999998 89999888765 4799999999999976543
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+..+++..+++..++ +++++||++|.|++++|+.+++.+..
T Consensus 149 v~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 149 VSQQRAEEFSEAQDM-YYLETSAKESDNVEKLFLDLACRLIS 189 (201)
T ss_dssp SCHHHHHHHHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 467888889988887 99999999999999999999998875
No 32
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=1e-22 Score=144.81 Aligned_cols=109 Identities=24% Similarity=0.434 Sum_probs=94.6
Q ss_pred CCCCCccc-ccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCC
Q 031970 1 MNVIGQED-YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGL 77 (150)
Q Consensus 1 wDt~G~e~-~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~ 77 (150)
|||+|++. +..+.+.|++.++++|+|||++++.+|+.+ ..|...+.+.. +++|+++|+||+|+.....
T Consensus 92 ~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~-------- 162 (211)
T 2g3y_A 92 LDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCRE-------- 162 (211)
T ss_dssp ECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC--------
T ss_pred eecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHH-HHHHHHHHHHhCCCCCcEEEEEEChHHhcCce--------
Confidence 89999987 566788899999999999999999999998 78888776542 4799999999999976433
Q ss_pred CccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 78 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+...+...++..+++ +++++||++|.||+++|+.+++.+..
T Consensus 163 --v~~~e~~~~a~~~~~-~~~e~SAk~g~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 163 --VSVSEGRACAVVFDC-KFIETSAAVQHNVKELFEGIVRQVRL 203 (211)
T ss_dssp --SCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred --EeHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 467778888888997 99999999999999999999998854
No 33
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.89 E-value=1.3e-22 Score=137.70 Aligned_cols=108 Identities=30% Similarity=0.560 Sum_probs=97.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.....
T Consensus 60 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~---------- 128 (170)
T 1r2q_A 60 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANKRA---------- 128 (170)
T ss_dssp EEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------
T ss_pred EeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccc----------
Confidence 89999999999999999999999999999999999998 88988887764 5899999999999976543
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
+..+++..+++..++ +++++||+++.|++++|+.|++.+.
T Consensus 129 ~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 129 VDFQEAQSYADDNSL-LFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp SCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred cCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 367888889999987 9999999999999999999998764
No 34
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.89 E-value=3.9e-22 Score=140.00 Aligned_cols=121 Identities=43% Similarity=0.794 Sum_probs=100.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~ 78 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+...|...+....++.|+++|+||+|+........ ......
T Consensus 78 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 157 (201)
T 2gco_A 78 WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQE 157 (201)
T ss_dssp ECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCC
T ss_pred EECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccC
Confidence 899999999999999999999999999999999999875688888888777899999999999976421000 000112
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
.+..+++..+++..+..+++++||+++.|++++|+.+++.+++
T Consensus 158 ~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 158 PVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 3577888899999987689999999999999999999988764
No 35
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.89 E-value=8.1e-23 Score=140.94 Aligned_cols=109 Identities=29% Similarity=0.533 Sum_probs=98.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..++..+++++|++++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+...
T Consensus 71 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--------- 140 (183)
T 3kkq_A 71 LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHLRK--------- 140 (183)
T ss_dssp EECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCSTTCC---------
T ss_pred EECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCCchhccC---------
Confidence 89999999999999999999999999999999999998 88988886532 5799999999999976443
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccC-CCCCHHHHHHHHHHHHhC
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSK-TQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~~~~~l~~~~~~ 121 (150)
+..+++..+++.+++ +++++||+ ++.|++++|+.+++.+.+
T Consensus 141 -v~~~~~~~~~~~~~~-~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 141 -VTRDQGKEMATKYNI-PYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp -SCHHHHHHHHHHHTC-CEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHhCC-eEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 488899999999997 99999999 999999999999988764
No 36
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=3.7e-23 Score=144.03 Aligned_cols=110 Identities=30% Similarity=0.603 Sum_probs=100.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||+|+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+...
T Consensus 77 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~---------- 145 (191)
T 3dz8_A 77 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKCDMEEERV---------- 145 (191)
T ss_dssp ECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------
T ss_pred EeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------
Confidence 89999999999999999999999999999999999998 88999998866 5899999999999976544
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
+...++..+++.+++ +++++||+++.|++++|+.+++.+.+.
T Consensus 146 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 146 VPTEKGQLLAEQLGF-DFFEASAKENISVRQAFERLVDAICDK 187 (191)
T ss_dssp SCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 477888999999998 999999999999999999999988753
No 37
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.89 E-value=2.5e-22 Score=139.46 Aligned_cols=109 Identities=32% Similarity=0.632 Sum_probs=98.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||+|+++|..++..+++.+|++|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.....
T Consensus 76 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~---------- 144 (189)
T 2gf9_A 76 WDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLEDERV---------- 144 (189)
T ss_dssp EECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------
T ss_pred EeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccC----------
Confidence 89999999999999999999999999999999999998 88999888765 5799999999999976543
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+..+++..+++.+++ +++++||+++.|++++|+.+++.+.+
T Consensus 145 ~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 145 VPAEDGRRLADDLGF-EFFEASAKENINVKQVFERLVDVICE 185 (189)
T ss_dssp SCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 367888899999997 99999999999999999999998864
No 38
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.89 E-value=1.5e-22 Score=138.68 Aligned_cols=109 Identities=26% Similarity=0.559 Sum_probs=98.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.....
T Consensus 69 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---------- 137 (179)
T 1z0f_A 69 WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQRD---------- 137 (179)
T ss_dssp EECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------
T ss_pred EECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------
Confidence 89999999999999999999999999999999999998 89998888766 5899999999999976543
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+..+++..+++.+++ +++++||+++.|++++|+.+++.+.+
T Consensus 138 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 138 VTYEEAKQFAEENGL-LFLEASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp SCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 377888999999997 99999999999999999999988754
No 39
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=141.55 Aligned_cols=111 Identities=29% Similarity=0.527 Sum_probs=100.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..++..+++.+|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.....
T Consensus 70 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~---------- 138 (196)
T 3tkl_A 70 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV---------- 138 (196)
T ss_dssp EEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------
T ss_pred EECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccc----------
Confidence 89999999999999999999999999999999999998 88999888775 4799999999999976554
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
+...+...+++.+++ +++++||+++.|++++|+.+++.+.+..
T Consensus 139 ~~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~~l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 139 VDYTTAKEFADSLGI-PFLETSAKNATNVEQSFMTMAAEIKKRM 181 (196)
T ss_dssp SCHHHHHHHHHHTTC-CEEEECTTTCTTHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 377888999999997 9999999999999999999999887543
No 40
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=1.3e-22 Score=141.48 Aligned_cols=111 Identities=26% Similarity=0.518 Sum_probs=98.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..++..+++.+|++|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.....
T Consensus 77 ~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~---------- 145 (192)
T 2fg5_A 77 WDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE---------- 145 (192)
T ss_dssp EEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------
T ss_pred EcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------
Confidence 89999999999999999999999999999999999998 89999988775 4799999999999975433
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
+..+++..+++.+++ +++++||+++.|++++|+.|.+.+.+.+
T Consensus 146 v~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 188 (192)
T 2fg5_A 146 VPLKDAKEYAESIGA-IVVETSAKNAINIEELFQGISRQIPPLD 188 (192)
T ss_dssp SCHHHHHHHHHTTTC-EEEECBTTTTBSHHHHHHHHHHTCC---
T ss_pred cCHHHHHHHHHHcCC-EEEEEeCCCCcCHHHHHHHHHHHHHhhC
Confidence 477889999999997 9999999999999999999999886543
No 41
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.88 E-value=1.2e-22 Score=143.06 Aligned_cols=119 Identities=54% Similarity=0.910 Sum_probs=100.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~ 78 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+...|+..+....++.|+++|+||+|+........ .+....
T Consensus 83 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 162 (204)
T 4gzl_A 83 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 162 (204)
T ss_dssp EEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCC
T ss_pred EECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccc
Confidence 899999999999999999999999999999999999984489999998878899999999999976432100 000112
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
.+..+++..+++.++..+++++||++|.|++++|+.+++.+
T Consensus 163 ~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 163 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 25778889999999987899999999999999999998765
No 42
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.88 E-value=3.1e-22 Score=135.97 Aligned_cols=108 Identities=23% Similarity=0.529 Sum_probs=97.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..++..+++.+|++|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.....
T Consensus 60 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~---------- 128 (170)
T 1z0j_A 60 WDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVRE---------- 128 (170)
T ss_dssp EEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGCC----------
T ss_pred EcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECCccccccc----------
Confidence 89999999999999999999999999999999999998 89999888764 6799999999999976543
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
+..++...+++..++ +++++||+++.|++++|+.+.+.+.
T Consensus 129 v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 129 VMERDAKDYADSIHA-IFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp SCHHHHHHHHHHTTC-EEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred cCHHHHHHHHHHcCC-EEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 367888899999997 9999999999999999999998775
No 43
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.88 E-value=1e-22 Score=142.93 Aligned_cols=108 Identities=28% Similarity=0.488 Sum_probs=94.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccccccccCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHP 75 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilv~nK~D~~~~~~~~~~~~ 75 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+....
T Consensus 62 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------- 133 (207)
T 1vg8_A 62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ------- 133 (207)
T ss_dssp EEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-------
T ss_pred EeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHH-HHHHHHHHHhcccccCCCCcEEEEEECCCCcccc-------
Confidence 89999999999999999999999999999999999998 88988877554 378999999999997322
Q ss_pred CCCccCHHHHHHHHH-HcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 76 GLVPVTTAQGEELRK-QIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 76 ~~~~v~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+..+++..++. ..+. +++++||++|.|++++|+.|++.+..
T Consensus 134 ----~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 134 ----VATKRAQAWCYSKNNI-PYFETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp ----SCHHHHHHHHHHTTSC-CEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ----cCHHHHHHHHHhcCCc-eEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 36677888887 4454 89999999999999999999988864
No 44
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.88 E-value=1.5e-22 Score=138.32 Aligned_cols=109 Identities=23% Similarity=0.415 Sum_probs=90.2
Q ss_pred CCCCCccc--ccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCC
Q 031970 1 MNVIGQED--YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPG 76 (150)
Q Consensus 1 wDt~G~e~--~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~ 76 (150)
|||+|++. +..+...+++.+|++++|||++++.+++.+ ..|...+.... ++.|+++|+||+|+.+...
T Consensus 57 ~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~------- 128 (175)
T 2nzj_A 57 VDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKADLARCRE------- 128 (175)
T ss_dssp ECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHH-HHHHHHHHHCC----CCEEEEEECTTCTTTCC-------
T ss_pred EecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhhccCCCCEEEEEEChhhccccc-------
Confidence 89999998 677778899999999999999999999998 88988887653 4799999999999976543
Q ss_pred CCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 77 LVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+..++...++..+++ +++++||++|.|++++|+.|++.+..
T Consensus 129 ---v~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 129 ---VSVEEGRACAVVFDC-KFIETSATLQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp ---SCHHHHHHHHHHHTS-EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ---cCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 367788888888997 99999999999999999999998864
No 45
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.88 E-value=3.8e-23 Score=143.69 Aligned_cols=109 Identities=22% Similarity=0.253 Sum_probs=96.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCC------ChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLV------SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH 74 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~------~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~ 74 (150)
|||||+++|..+++.+++++|++|+|||++ +..+++.+ ..|+..+....++.|+++|+||+|+...
T Consensus 79 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l-~~~l~~~~~~~~~~piilv~NK~Dl~~~------- 150 (198)
T 3t1o_A 79 YTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNM-RENLAEYGLTLDDVPIVIQVNKRDLPDA------- 150 (198)
T ss_dssp EECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHH-HHHHHHTTCCTTSSCEEEEEECTTSTTC-------
T ss_pred EeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHH-HHHHHhhccccCCCCEEEEEEchhcccc-------
Confidence 899999999999999999999999999999 56788887 7888888655578999999999998764
Q ss_pred CCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 75 PGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 75 ~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
+..+++..+++.+++.+++++||+++.|++++|+.+++.+.+.
T Consensus 151 -----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 151 -----LPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp -----CCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred -----cCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 3778889999988866899999999999999999999988753
No 46
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.88 E-value=1.6e-22 Score=142.92 Aligned_cols=121 Identities=36% Similarity=0.660 Sum_probs=100.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~ 78 (150)
|||+|+++|..++..+++++|++|+|||++++.+++.+...|+..+.+..++.|+++|+||+|+........ .+....
T Consensus 81 ~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 160 (205)
T 1gwn_A 81 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQT 160 (205)
T ss_dssp EEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCC
T ss_pred EeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccC
Confidence 899999999999999999999999999999999999875689999988778899999999999975311000 001123
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccC-CCCCHHHHHHHHHHHHhC
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSK-TQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~~~~~l~~~~~~ 121 (150)
.+..+++..+++.++..+++++||+ ++.||+++|+.+++.++.
T Consensus 161 ~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 161 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 4677889999999884499999999 689999999999988763
No 47
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=5.9e-22 Score=139.70 Aligned_cols=123 Identities=42% Similarity=0.769 Sum_probs=102.1
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~ 78 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+...|+..+....++.|+++|+||+|+........ ......
T Consensus 78 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 157 (207)
T 2fv8_A 78 WDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQE 157 (207)
T ss_dssp EECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCC
T ss_pred EECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccC
Confidence 899999999999999999999999999999999999875678888888777899999999999976421000 000012
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
.+...++..+++..+..+++++||+++.|++++|+.+++.++.+.
T Consensus 158 ~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 158 PVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence 257778888999988768999999999999999999999988653
No 48
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.88 E-value=1.4e-22 Score=137.12 Aligned_cols=109 Identities=28% Similarity=0.490 Sum_probs=95.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC--CCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~--~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..++..+++.+|++++|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+...
T Consensus 57 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------- 126 (168)
T 1u8z_A 57 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ--------- 126 (168)
T ss_dssp EECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC---------
T ss_pred EECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccccccCc---------
Confidence 89999999999999999999999999999999999998 889888887653 799999999999976543
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+..+++..+++.+++ +++++||+++.|++++|+.+++.+.+
T Consensus 127 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 127 -VSVEEAKNRADQWNV-NYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp -SCHHHHHHHHHHHTC-EEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred -cCHHHHHHHHHHcCC-eEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 377888999999997 99999999999999999999998764
No 49
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.88 E-value=2.7e-22 Score=136.25 Aligned_cols=109 Identities=29% Similarity=0.555 Sum_probs=97.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+....
T Consensus 57 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~----------- 124 (170)
T 1g16_A 57 WDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETRV----------- 124 (170)
T ss_dssp ECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTCC-----------
T ss_pred EeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCCcCc-----------
Confidence 89999999999999999999999999999999999998 89998888765 579999999999994322
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
+..+++..+++.+++ +++++||+++.|++++|+.+.+.+.+.
T Consensus 125 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 125 VTADQGEALAKELGI-PFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp SCHHHHHHHHHHHTC-CEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 367888889999997 999999999999999999999988754
No 50
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.88 E-value=1.8e-22 Score=141.71 Aligned_cols=109 Identities=25% Similarity=0.511 Sum_probs=98.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..++..+++.+|++|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.....
T Consensus 79 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---------- 147 (200)
T 2o52_A 79 WDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPERE---------- 147 (200)
T ss_dssp ECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHTCTTCEEEEEEECGGGGGGCC----------
T ss_pred EcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccc----------
Confidence 89999999999999999999999999999999999998 89988887655 5799999999999976543
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+...++..+++..++ +++++||+++.|++++|+.+++.+..
T Consensus 148 v~~~~~~~~~~~~~~-~~~~~SA~~g~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 148 VTFLEASRFAQENEL-MFLETSALTGENVEEAFLKCARTILN 188 (200)
T ss_dssp SCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 367888889999997 99999999999999999999998875
No 51
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.88 E-value=2.7e-22 Score=136.11 Aligned_cols=111 Identities=27% Similarity=0.486 Sum_probs=97.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..++..+++++|++++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+..... ...
T Consensus 57 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-------~~~ 128 (170)
T 1ek0_A 57 WDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQEGG-------ERK 128 (170)
T ss_dssp EEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGSSC-------CCC
T ss_pred EECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccc-------ccC
Confidence 89999999999999999999999999999999999998 88988888765 5799999999999976421 123
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
+..+....+++..++ +++++||+++.|++++|+.+.+.+.
T Consensus 129 v~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 129 VAREEGEKLAEEKGL-LFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp SCHHHHHHHHHHHTC-EEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 577888899999997 9999999999999999999987764
No 52
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.88 E-value=3.5e-22 Score=137.93 Aligned_cols=109 Identities=24% Similarity=0.491 Sum_probs=98.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.....
T Consensus 64 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---------- 132 (186)
T 2bme_A 64 WDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDADRE---------- 132 (186)
T ss_dssp EEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------
T ss_pred EeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------
Confidence 89999999999999999999999999999999999998 88988887664 5799999999999976443
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+...++..+++..++ +++++||+++.|++++|+.+++.+.+
T Consensus 133 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 133 VTFLEASRFAQENEL-MFLETSALTGENVEEAFVQCARKILN 173 (186)
T ss_dssp SCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCC-EEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 377888899999997 99999999999999999999998875
No 53
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.88 E-value=1.3e-22 Score=140.51 Aligned_cols=110 Identities=28% Similarity=0.509 Sum_probs=99.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.....
T Consensus 75 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------- 144 (195)
T 3bc1_A 75 WDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIVLCGNKSDLEDQRA--------- 144 (195)
T ss_dssp EEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSSSSSCCEEEEEECTTCGGGCC---------
T ss_pred EeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc---------
Confidence 89999999999999999999999999999999999998 89998888766 4799999999999976543
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
+..+++..++..+++ +++++||+++.|++++|+.|.+.+.+.
T Consensus 145 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 145 -VKEEEARELAEKYGI-PYFETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp -SCHHHHHHHHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHcCC-CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 367888899999997 999999999999999999999988753
No 54
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.88 E-value=3e-22 Score=135.71 Aligned_cols=109 Identities=24% Similarity=0.517 Sum_probs=96.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..++..+++++|++++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+...
T Consensus 56 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------- 125 (167)
T 1c1y_A 56 LDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV--------- 125 (167)
T ss_dssp EEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC---------
T ss_pred EECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhhCcCCCcEEEEEECcccccccc---------
Confidence 89999999999999999999999999999999999998 78888877652 5799999999999976543
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
+..+++..+++.++..+++++||++|.|++++|+.+++.+.
T Consensus 126 -~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 126 -VGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp -SCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence 36788888998883349999999999999999999998774
No 55
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.88 E-value=3.3e-22 Score=138.88 Aligned_cols=108 Identities=22% Similarity=0.325 Sum_probs=93.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||+|+++|. +++++|++++|||++++.+|+.+ ..|+..+.... .+.|+++|+||+|+..... .
T Consensus 72 ~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------~ 137 (184)
T 3ihw_A 72 RDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISAANP--------R 137 (184)
T ss_dssp EECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHH-HHHHHHHHTTSCGGGSCEEEEEECTTCBTTBC--------C
T ss_pred EECCCChhhh-----eecCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc--------c
Confidence 8999999987 88899999999999999999998 88999998765 4799999999999853211 2
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
.+..+++..+++.++..+++++||+++.||+++|+.+++.+.+.
T Consensus 138 ~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 138 VIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVAL 181 (184)
T ss_dssp CSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 35788999999999744999999999999999999999988753
No 56
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.88 E-value=3.7e-22 Score=136.97 Aligned_cols=111 Identities=31% Similarity=0.522 Sum_probs=85.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccccccccCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHP 75 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilv~nK~D~~~~~~~~~~~~ 75 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.....
T Consensus 63 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~------ 135 (182)
T 1ky3_A 63 WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKK------ 135 (182)
T ss_dssp ECCC----------CCSTTCCEEEEEEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGC------
T ss_pred EECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHH-HHHHHHHHHHhcccCcCCCcEEEEEECCccccccc------
Confidence 89999999999999999999999999999999999998 88988877643 5799999999999864332
Q ss_pred CCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 76 GLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
.+...++..+++..+..+++++||+++.|++++|+.+++.+.+
T Consensus 136 ---~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 136 ---IVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178 (182)
T ss_dssp ---CSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred ---cCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 1467788888885443489999999999999999999998864
No 57
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.88 E-value=1.5e-22 Score=142.00 Aligned_cols=111 Identities=20% Similarity=0.318 Sum_probs=90.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC----CCCEEEEeeCCCccc-ccccccCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP----GVPVVLVGTKLDLRE-DKHYLADHP 75 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~----~~piilv~nK~D~~~-~~~~~~~~~ 75 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+....+ +.|+++|+||+|+.. ...
T Consensus 78 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~------ 150 (208)
T 2yc2_C 78 LDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ------ 150 (208)
T ss_dssp EETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHH-HHHHHHHHHHCSCTTSCCEEEEEEECC-------C------
T ss_pred EECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHH-HHHHHHHHHhhcccccCCcEEEEEECcccchhhcc------
Confidence 89999999999999999999999999999999999998 899999987654 799999999999976 333
Q ss_pred CCCccCHHHHHHHHHHcCCcEEEEeccCC-CCCHHHHHHHHHHHHhCCC
Q 031970 76 GLVPVTTAQGEELRKQIGASYYIECSSKT-QQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~-~~~i~~~~~~l~~~~~~~~ 123 (150)
+..+++..+++.+++ +++++||++ +.|++++|+.+++.+.+..
T Consensus 151 ----v~~~~~~~~~~~~~~-~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 151 ----VRLDMAQDWATTNTL-DFFDVSANPPGKDADAPFLSIATTFYRNY 194 (208)
T ss_dssp ----CCHHHHHHHHHHTTC-EEEECCC-------CHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHcCC-EEEEeccCCCCcCHHHHHHHHHHHHHHHH
Confidence 477889999999997 999999999 9999999999999887543
No 58
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.88 E-value=4.7e-22 Score=139.41 Aligned_cols=109 Identities=29% Similarity=0.615 Sum_probs=98.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.....
T Consensus 62 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~---------- 130 (203)
T 1zbd_A 62 WDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERV---------- 130 (203)
T ss_dssp EEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCSSCEEEEEEECTTCTTSCC----------
T ss_pred EECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCcccc----------
Confidence 89999999999999999999999999999999999998 88999888765 5799999999999976443
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+..+++..+++.+++ +++++||+++.|++++|+.|++.+.+
T Consensus 131 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 131 VSSERGRQLADHLGF-EFFEASAKDNINVKQTFERLVDVICE 171 (203)
T ss_dssp SCHHHHHHHHHHHTC-EEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHCCC-eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 377888899999997 99999999999999999999988864
No 59
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=7.5e-22 Score=137.10 Aligned_cols=110 Identities=28% Similarity=0.598 Sum_probs=98.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..++..+++.+|++|+|||++++.+++.+ ..|+..+.... .++|+++|+||+|+....
T Consensus 69 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~---------- 137 (195)
T 1x3s_A 69 WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENRE---------- 137 (195)
T ss_dssp EEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSSSCC----------
T ss_pred EeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCcCCCcEEEEEECCcCcccc----------
Confidence 89999999999999999999999999999999999998 89999988765 479999999999985422
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
+..+++..+++..++ +++++||+++.|++++|+.|++.+...+
T Consensus 138 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 138 -VDRNEGLKFARKHSM-LFIEASAKTCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp -SCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred -cCHHHHHHHHHHcCC-EEEEecCCCCCCHHHHHHHHHHHHHhhh
Confidence 367888899999997 9999999999999999999999998654
No 60
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.87 E-value=2.9e-22 Score=139.43 Aligned_cols=109 Identities=28% Similarity=0.513 Sum_probs=98.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.....
T Consensus 79 ~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~---------- 147 (193)
T 2oil_A 79 WDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQARE---------- 147 (193)
T ss_dssp EEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTH-HHHHHHHHTTSCTTCEEEEEEECGGGGGGCC----------
T ss_pred EeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECCCcccccc----------
Confidence 89999999999999999999999999999999999988 88988887764 5799999999999976543
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+...++..+++..++ +++++||+++.|++++|+.|++.+.+
T Consensus 148 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 148 VPTEEARMFAENNGL-LFLETSALDSTNVELAFETVLKEIFA 188 (193)
T ss_dssp SCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 367888889999997 99999999999999999999998864
No 61
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.87 E-value=7.5e-22 Score=137.96 Aligned_cols=110 Identities=24% Similarity=0.438 Sum_probs=92.2
Q ss_pred CCCCCccc-ccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCC
Q 031970 1 MNVIGQED-YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGL 77 (150)
Q Consensus 1 wDt~G~e~-~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~ 77 (150)
|||+|++. +..+++.|++.+|++++|||++++.+|+.+ ..|...+.... ++.|+++|+||+|+.....
T Consensus 61 ~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~-------- 131 (192)
T 2cjw_A 61 LDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRXRE-------- 131 (192)
T ss_dssp ECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECTTCGGGCC--------
T ss_pred EEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhhCCCCCeEEEEEechhhhcccc--------
Confidence 89999887 566888899999999999999999999998 88887776643 4799999999999875433
Q ss_pred CccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 78 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
+...++..++..+++ +++++||++|.||+++|+.+++.+...
T Consensus 132 --v~~~~~~~~a~~~~~-~~~e~SA~~g~~v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 132 --VSVSEGRAXAVVFDX-KFIETSAAVQHNVKELFEGIVRQVRLR 173 (192)
T ss_dssp --SCHHHHHHHHHHTTC-EEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHhCC-ceEEeccccCCCHHHHHHHHHHHHHhh
Confidence 366777788888887 999999999999999999999988643
No 62
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.87 E-value=3.8e-22 Score=136.82 Aligned_cols=110 Identities=28% Similarity=0.494 Sum_probs=97.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh-C-CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~-~-~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..++..+++.+|++++|||++++.+++.+ ..|+..+.+. . .+.|+++|+||+|+.....
T Consensus 62 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------- 131 (181)
T 2fn4_A 62 LDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQRQ--------- 131 (181)
T ss_dssp EECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC---------
T ss_pred EECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc---------
Confidence 89999999999999999999999999999999999998 7888877443 2 4799999999999976543
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
+...+...++...++ +++++||+++.|++++|+.+.+.+.+.
T Consensus 132 -v~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 132 -VPRSEASAFGASHHV-AYFEASAKLRLNVDEAFEQLVRAVRKY 173 (181)
T ss_dssp -SCHHHHHHHHHHTTC-EEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 367888889999987 999999999999999999999988643
No 63
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.87 E-value=3.1e-22 Score=139.58 Aligned_cols=110 Identities=28% Similarity=0.583 Sum_probs=97.1
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||+|+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.....
T Consensus 80 ~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~---------- 148 (192)
T 2il1_A 80 WDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE---------- 148 (192)
T ss_dssp EEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------
T ss_pred EeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------
Confidence 89999999999999999999999999999999999998 89998888765 4799999999999976543
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+..+++..+++.++..+++++||+++.|++++|+.|++.+.+
T Consensus 149 v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 149 ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp SCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 367788888888533499999999999999999999988764
No 64
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.87 E-value=1.2e-21 Score=134.17 Aligned_cols=110 Identities=33% Similarity=0.603 Sum_probs=95.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccccccccCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHP 75 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilv~nK~D~~~~~~~~~~~~ 75 (150)
|||||+++|..++..+++.+|++++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+....
T Consensus 61 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~------- 132 (177)
T 1wms_A 61 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISERQ------- 132 (177)
T ss_dssp EECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-------
T ss_pred EeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHH-HHHHHHHHHHccccccCCCcEEEEEECCcccccc-------
Confidence 89999999999999999999999999999999999998 88988887543 478999999999987322
Q ss_pred CCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 76 GLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
+..+++..+++..+..+++++||+++.|++++|+.+++.+.+.
T Consensus 133 ----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 133 ----VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp ----SCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred ----cCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 3678888888844434999999999999999999999998764
No 65
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.87 E-value=5.7e-22 Score=136.58 Aligned_cols=109 Identities=28% Similarity=0.492 Sum_probs=98.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC--CCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~--~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..++..+++.+|++++|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+...
T Consensus 71 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------- 140 (187)
T 2a9k_A 71 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ--------- 140 (187)
T ss_dssp EECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHH-HHHHHHHHHHHCCTTCCEEEEEECGGGGGGCC---------
T ss_pred EECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccCc---------
Confidence 89999999999999999999999999999999999998 889888887654 799999999999976543
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+...++..+++.+++ +++++||+++.|++++|+.|++.+..
T Consensus 141 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 141 -VSVEEAKNRAEQWNV-NYVETSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp -SCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHcCC-eEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 377888899999997 99999999999999999999998863
No 66
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.87 E-value=5e-22 Score=139.17 Aligned_cols=115 Identities=27% Similarity=0.447 Sum_probs=97.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...... .....
T Consensus 82 ~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~----~~~~~ 156 (199)
T 2p5s_A 82 WDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIRDTAAT----EGQKC 156 (199)
T ss_dssp EECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTH-HHHHHHHHHHC---CCEEEEEECGGGHHHHHH----TTCCC
T ss_pred EECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccccccccc----ccccc
Confidence 89999999999999999999999999999999999998 88998888765 47999999999999743210 01123
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+..+++..+++.+++ +++++||+++.|++++|+.|++.+.+
T Consensus 157 v~~~~~~~~~~~~~~-~~~~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 157 VPGHFGEKLAMTYGA-LFCETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp CCHHHHHHHHHHHTC-EEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHcCC-eEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 577888899999997 99999999999999999999998864
No 67
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.87 E-value=1.6e-22 Score=143.29 Aligned_cols=110 Identities=33% Similarity=0.563 Sum_probs=99.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..++..+++.+|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.....
T Consensus 89 ~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~--------- 158 (217)
T 2f7s_A 89 WDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQRE--------- 158 (217)
T ss_dssp EEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC---------
T ss_pred EECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCcCCCCEEEEEECCccccccc---------
Confidence 89999999999999999999999999999999999998 89998887655 5799999999999976543
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
+...++..+++.+++ +++++||+++.|++++|+.|++.+.+.
T Consensus 159 -v~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 159 -VNERQARELADKYGI-PYFETSAATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp -SCHHHHHHHHHHTTC-CEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHCCC-cEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 367888999999997 999999999999999999999988753
No 68
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.87 E-value=6.8e-22 Score=135.33 Aligned_cols=109 Identities=29% Similarity=0.522 Sum_probs=96.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+...
T Consensus 68 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~---------- 136 (179)
T 2y8e_A 68 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ---------- 136 (179)
T ss_dssp EEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECGGGGGGCC----------
T ss_pred EECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCcccccCc----------
Confidence 89999999999999999999999999999999999998 88988887654 4799999999999976543
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+...+...+++..++ +++++||+++.|++++|+.+.+.+..
T Consensus 137 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 137 VSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp SCHHHHHHHHHHHTC-EEEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred CCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 367888889999997 99999999999999999999987643
No 69
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.86 E-value=7.9e-22 Score=136.94 Aligned_cols=108 Identities=25% Similarity=0.431 Sum_probs=94.3
Q ss_pred CCCCCccccc-ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCC
Q 031970 1 MNVIGQEDYN-RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGL 77 (150)
Q Consensus 1 wDt~G~e~~~-~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~ 77 (150)
|||||+++|. .++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.....
T Consensus 74 ~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-------- 144 (189)
T 1z06_A 74 WDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAIQ-------- 144 (189)
T ss_dssp EECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC--------
T ss_pred EECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce--------
Confidence 8999999998 8899999999999999999999999998 88998888764 5799999999999976543
Q ss_pred CccCHHHHHHHHHHcCCcEEEEeccCCC---CCHHHHHHHHHHHHh
Q 031970 78 VPVTTAQGEELRKQIGASYYIECSSKTQ---QNVKAVFDAAIKVVI 120 (150)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~---~~i~~~~~~l~~~~~ 120 (150)
+..+++..+++.+++ +++++||+++ .|+.++|+.|++.+.
T Consensus 145 --v~~~~~~~~~~~~~~-~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 145 --VPTDLAQKFADTHSM-PLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp --SCHHHHHHHHHHTTC-CEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred --eCHHHHHHHHHHcCC-EEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 377888899999997 9999999999 999999999988764
No 70
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.86 E-value=3.3e-22 Score=142.17 Aligned_cols=109 Identities=28% Similarity=0.485 Sum_probs=97.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||+|+++|..++..+++++|++|+|||++++.+++.+ ..|+..+....++.|+++|+||+|+.+...
T Consensus 69 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------- 136 (221)
T 3gj0_A 69 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKV----------- 136 (221)
T ss_dssp EEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTH-HHHHHHHHHHSTTCCEEEEEECTTSSSCSS-----------
T ss_pred EeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCccccccc-----------
Confidence 89999999999999999999999999999999999998 899999998888899999999999976432
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970 81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
..+...+++..++ +++++||+++.|++++|+.+++.+...+
T Consensus 137 -~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 137 -KAKSIVFHRKKNL-QYYDISAKSNYNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp -CGGGCCHHHHHTC-EEEECBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred -cHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 1244567777887 9999999999999999999999997654
No 71
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.86 E-value=3.3e-21 Score=134.24 Aligned_cols=107 Identities=26% Similarity=0.486 Sum_probs=95.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||+++|..++..+++.+|++|+|||++++.+++.+ ..|+..+....+ .|+++|+||+| ..... +
T Consensus 98 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~~~~~i~~~~~-~piilv~NK~D-~~~~~----------~ 164 (208)
T 3clv_A 98 WDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRA-KTWVNQLKISSN-YIIILVANKID-KNKFQ----------V 164 (208)
T ss_dssp EECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSC-CEEEEEEECTT-CC-CC----------S
T ss_pred EECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHhhCC-CcEEEEEECCC-ccccc----------C
Confidence 89999999999999999999999999999999999998 899988887654 99999999999 33222 4
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
..+++..+++..++ +++++||+++.|++++|+.+++.+.+
T Consensus 165 ~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 165 DILEVQKYAQDNNL-LFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp CHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 77889999999997 99999999999999999999988763
No 72
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.86 E-value=1e-21 Score=139.23 Aligned_cols=111 Identities=26% Similarity=0.420 Sum_probs=97.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||+|++++..++..+++++|++|+|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+...
T Consensus 66 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---------- 134 (218)
T 4djt_A 66 WDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKNRQK---------- 134 (218)
T ss_dssp EEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHHCSSSCEEEEEECTTCC--------------
T ss_pred EecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------
Confidence 89999999999999999999999999999999999998 899988887654 599999999999976533
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
+....+..++...++ +++++||++|.|++++|+.+++.+.+..
T Consensus 135 ~~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 135 ISKKLVMEVLKGKNY-EYFEISAKTAHNFGLPFLHLARIFTGRP 177 (218)
T ss_dssp CCHHHHHHHTTTCCC-EEEEEBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred cCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 477888888888887 9999999999999999999999997654
No 73
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.86 E-value=6.8e-22 Score=137.84 Aligned_cols=113 Identities=13% Similarity=0.128 Sum_probs=88.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---------CCCCEEEEeeCCCcccccccc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS---------PGVPVVLVGTKLDLREDKHYL 71 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---------~~~piilv~nK~D~~~~~~~~ 71 (150)
|||+|+++|..++..+++++|++|+|||++++.+|+.+ ..|+..+.... .+.|+++|+||+|+......
T Consensus 68 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~- 145 (199)
T 4bas_A 68 FDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVV-KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTA- 145 (199)
T ss_dssp EEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHH-HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCH-
T ss_pred EECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHH-HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCH-
Confidence 89999999999999999999999999999999999998 77877776541 27999999999999765321
Q ss_pred cCCCCCCccCHHHHH-HHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 72 ADHPGLVPVTTAQGE-ELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 72 ~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
..+...... .+++..++ +++++||+++.||+++|+.|++.+...
T Consensus 146 ------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 146 ------AELVEILDLTTLMGDHPF-VIFASNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp ------HHHHHHHTHHHHHTTSCE-EEEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHhcchhhccCCee-EEEEeeCCCccCHHHHHHHHHHHHHHH
Confidence 001111111 11244565 899999999999999999999998754
No 74
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.86 E-value=6.2e-22 Score=133.85 Aligned_cols=108 Identities=27% Similarity=0.566 Sum_probs=96.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..++..+++.+|++++|||++++.+++.+ ..|...+.... .+.|+++|+||+|+.+...
T Consensus 56 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------- 125 (167)
T 1kao_A 56 LDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESERE--------- 125 (167)
T ss_dssp EECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC---------
T ss_pred EECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCccccccc---------
Confidence 89999999999999999999999999999999999998 78888777654 4799999999999876543
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
+...+...+++.+++ +++++||+++.|++++|+.+++.+.
T Consensus 126 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 126 -VSSSEGRALAEEWGC-PFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp -SCHHHHHHHHHHHTS-CEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHhCC-CEEEecCCCCcCHHHHHHHHHHHHh
Confidence 367888889999997 9999999999999999999998764
No 75
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=6.2e-22 Score=134.60 Aligned_cols=109 Identities=25% Similarity=0.468 Sum_probs=95.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccccccccCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGL 77 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~ 77 (150)
|||||+++|..++..+++.+|++++|||++++.+++.+ ..|+..+.+.. ++.|+++|+||+|+.....
T Consensus 56 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~-------- 126 (172)
T 2erx_A 56 TDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSRE-------- 126 (172)
T ss_dssp EECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGCC--------
T ss_pred EECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHH-HHHHHHHHHHhCCCCCCCEEEEEEccccccccc--------
Confidence 89999999999999999999999999999999999987 77877776543 4799999999999976543
Q ss_pred CccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 78 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+...+...+++.+++ +++++||+++.|++++|+.+++.+..
T Consensus 127 --v~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 127 --VQSSEAEALARTWKC-AFMETSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp --SCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred --cCHHHHHHHHHHhCC-eEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 366778888888887 99999999999999999999987654
No 76
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.86 E-value=1.1e-21 Score=134.59 Aligned_cols=108 Identities=23% Similarity=0.301 Sum_probs=88.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh---C-CCCCEEEEeeCCCcccccccccCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY---S-PGVPVVLVGTKLDLREDKHYLADHPG 76 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~---~-~~~piilv~nK~D~~~~~~~~~~~~~ 76 (150)
|||+|+++ ..|++++|++|+|||++++.+++.+ ..|+..+... . ++.|+++|+||+|+.....
T Consensus 59 ~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~------- 125 (178)
T 2iwr_A 59 REEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRISASSP------- 125 (178)
T ss_dssp EECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHH-HHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBC-------
T ss_pred EECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEEECcccccccc-------
Confidence 89999997 4678899999999999999999998 7865555433 2 4799999999999853211
Q ss_pred CCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 77 LVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
..+..+++..+++..+..+++++||++|.|++++|+.+++.+...
T Consensus 126 -~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 126 -RVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTL 170 (178)
T ss_dssp -CCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred -CcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHH
Confidence 225778888898887434999999999999999999999988753
No 77
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.86 E-value=2.9e-21 Score=133.93 Aligned_cols=108 Identities=31% Similarity=0.524 Sum_probs=86.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||+|+++|..++..+++.+|++++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+....
T Consensus 74 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~---------- 142 (190)
T 3con_A 74 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPTRT---------- 142 (190)
T ss_dssp EECCC-----------CTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCCC----------
T ss_pred EECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECCcCCccc----------
Confidence 89999999999999999999999999999999999998 88988887654 379999999999987622
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+..+++..+++.+++ +++++||+++.|++++|+.+++.+.+
T Consensus 143 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 143 -VDTKQAHELAKSYGI-PFIETSAKTRQGVEDAFYTLVREIRQ 183 (190)
T ss_dssp -SCHHHHHHHHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 367888899999997 99999999999999999999998864
No 78
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=3e-21 Score=136.00 Aligned_cols=108 Identities=30% Similarity=0.557 Sum_probs=96.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..++..+++.+|++|+|||++++.+++.+ ..|+..+....+ +.|+++|+||+|+... .
T Consensus 74 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~-~---------- 141 (213)
T 3cph_A 74 WDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETR-V---------- 141 (213)
T ss_dssp ECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHTTTCSEEEEEEECTTCSSC-C----------
T ss_pred EeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccc-c----------
Confidence 89999999999999999999999999999999999998 899988887664 7999999999999432 2
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+...++..+++.+++ +++++||+++.|++++|+.|.+.+.+
T Consensus 142 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 142 VTADQGEALAKELGI-PFIESSAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp SCHHHHHHHHHHHTC-CEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 367788889999997 99999999999999999999988764
No 79
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.86 E-value=2.6e-21 Score=130.48 Aligned_cols=108 Identities=30% Similarity=0.549 Sum_probs=96.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC--CCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~--~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..++..+++.+|++++|||++++.+++.+ ..|+..+....+ +.|+++|+||+|+....
T Consensus 56 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~---------- 124 (166)
T 2ce2_X 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAART---------- 124 (166)
T ss_dssp EECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCCC----------
T ss_pred EECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEchhhhhcc----------
Confidence 89999999999999999999999999999999999998 889888877653 79999999999987632
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+...+...+++.+++ +++++||+++.|++++|+.+++.+.+
T Consensus 125 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 125 -VESRQAQDLARSYGI-PYIETSAKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp -SCHHHHHHHHHHHTC-CEEEECTTTCTTHHHHHHHHHHHHHT
T ss_pred -cCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 367888899999997 99999999999999999999988754
No 80
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.86 E-value=4.2e-21 Score=143.58 Aligned_cols=122 Identities=52% Similarity=0.892 Sum_probs=101.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~ 78 (150)
|||||+++|..++..+++++|++++|||++++.+++.+...|+..+....+++|+++|+||+|+........ ......
T Consensus 208 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~ 287 (332)
T 2wkq_A 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 287 (332)
T ss_dssp EEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCC
T ss_pred EeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccc
Confidence 899999999999999999999999999999999999984479999988777899999999999965321000 000012
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
.+...++..+++..++.+++++||++|.|++++|+.+++.++.+
T Consensus 288 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 288 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred cccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhcC
Confidence 35788899999999866899999999999999999999998765
No 81
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.85 E-value=1.4e-21 Score=136.66 Aligned_cols=114 Identities=12% Similarity=0.218 Sum_probs=90.8
Q ss_pred CCCCCcccccccc---cccccCCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCC
Q 031970 1 MNVIGQEDYNRLR---PLSYRGADVFVLAFSLVSR--ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP 75 (150)
Q Consensus 1 wDt~G~e~~~~l~---~~~~~~ad~~i~v~d~~~~--~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~ 75 (150)
|||+|+++|..+. ..+++++|++|+|||++++ ++++.+ ..|+..+....++.|+++|+||+|+.+..... .
T Consensus 74 ~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~---~ 149 (196)
T 3llu_A 74 WDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRL-HITVSKAYKVNPDMNFEVFIHKVDGLSDDHKI---E 149 (196)
T ss_dssp EECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHH-HHHHHHHHHHCTTCEEEEEEECGGGSCHHHHH---H
T ss_pred EECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeccccCchhhhh---H
Confidence 9999999998877 7999999999999999997 677776 67888776666789999999999986532100 0
Q ss_pred CCCccCHHHHHHHHH----HcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970 76 GLVPVTTAQGEELRK----QIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 76 ~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
..+.+.......+++ ..++ +++++||++ .||+++|..+++.++
T Consensus 150 ~~~~v~~~~~~~~~~~~~~~~~~-~~~e~Sa~~-~~v~~~f~~l~~~li 196 (196)
T 3llu_A 150 TQRDIHQRANDDLADAGLEKLHL-SFYLTSIYD-HSIFEAFSKVVQKLI 196 (196)
T ss_dssp HHHHHHHHHHHHHHHTTCTTSCE-EEEEECTTS-THHHHHHHHHHHHTC
T ss_pred HHhHHHHHHHHHHHHhhhhcCCc-ceEEEEech-hhHHHHHHHHHHHhC
Confidence 001235556677777 6676 899999999 999999999998763
No 82
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.85 E-value=3.5e-21 Score=135.06 Aligned_cols=106 Identities=15% Similarity=0.177 Sum_probs=84.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..+++.+++++|++++|||++++.+++.+ ..|+..+.+.. .+.|+++|+||+|+...
T Consensus 74 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~----------- 141 (198)
T 1f6b_A 74 FDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLES-KEELDSLMTDETIANVPILILGNKIDRPEA----------- 141 (198)
T ss_dssp EEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHH-HHHHHHHHTCGGGTTSCEEEEEECTTSTTC-----------
T ss_pred EECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHH-HHHHHHHHhCcccCCCcEEEEEECCCcccc-----------
Confidence 89999999999999999999999999999999999998 78887776542 57999999999998752
Q ss_pred ccCHHHHHHHHHHc----------------CCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970 79 PVTTAQGEELRKQI----------------GASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 79 ~v~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
+..+++..++... ...+++++||++|.|++++|+.+++.+
T Consensus 142 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 142 -ISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp -CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred -CCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 2556666665432 223799999999999999999998643
No 83
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.85 E-value=1.7e-22 Score=141.52 Aligned_cols=109 Identities=29% Similarity=0.547 Sum_probs=87.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..++..+++.+|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.....
T Consensus 87 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~---------- 155 (199)
T 3l0i_B 87 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV---------- 155 (199)
T ss_dssp ECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHH-HHHHHHHHSCC-CCSEEEEC-CCSSCC--CC----------
T ss_pred EECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhccCCCCEEEEEECccCCcccc----------
Confidence 89999999999999999999999999999999999998 88999998765 3799999999999976543
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+...++..+++.+++ +++++||+++.|++++|+.|++.+.+
T Consensus 156 v~~~~~~~~~~~~~~-~~~~vSA~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 156 VDYTTAKEFADSLGI-PFLETSAKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp CCSCC-CHHHHTTTC-CBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred CCHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 244566778888887 89999999999999999999887764
No 84
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.85 E-value=1.6e-21 Score=132.72 Aligned_cols=108 Identities=9% Similarity=0.082 Sum_probs=87.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+...
T Consensus 56 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------- 125 (171)
T 1upt_A 56 WDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGIS-KSELVAMLEEEELRKAILVVFANKQDMEQAMT--------- 125 (171)
T ss_dssp EEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---------
T ss_pred EECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHhchhhCCCEEEEEEECCCCcCCCC---------
Confidence 89999999999999999999999999999999999988 67776665432 5799999999999976421
Q ss_pred ccCHHHHHH-----HHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 79 PVTTAQGEE-----LRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 79 ~v~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
..+... .++..++ +++++||+++.|++++|+.+++.+.++
T Consensus 126 ---~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 126 ---SSEMANSLGLPALKDRKW-QIFKTSATKGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp ---HHHHHHHHTGGGCTTSCE-EEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred ---HHHHHHHhCchhccCCce-EEEECcCCCCcCHHHHHHHHHHHHhhc
Confidence 122221 2233454 899999999999999999999988654
No 85
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=1.9e-21 Score=135.85 Aligned_cols=108 Identities=31% Similarity=0.503 Sum_probs=96.1
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++ ..++..+++.+|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.....
T Consensus 81 ~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~--------- 149 (196)
T 2atv_A 81 LDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHSRQ--------- 149 (196)
T ss_dssp EECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC---------
T ss_pred EECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHH-HHHHHHHHHhhCCCCCcEEEEEECcccccccc---------
Confidence 89999999 77888899999999999999999999998 88888887653 5899999999999976543
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCC-CHHHHHHHHHHHHhC
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSKTQQ-NVKAVFDAAIKVVIK 121 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~l~~~~~~ 121 (150)
+..+++..+++.+++ +++++||+++. |++++|+.+++.+.+
T Consensus 150 -v~~~~~~~~~~~~~~-~~~~~Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 150 -VSTEEGEKLATELAC-AFYECSACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp -SCHHHHHHHHHHHTS-EEEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHhCC-eEEEECCCcCCcCHHHHHHHHHHHHHh
Confidence 477888899999997 99999999999 999999999998864
No 86
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=4.6e-21 Score=132.83 Aligned_cols=110 Identities=12% Similarity=0.112 Sum_probs=85.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+... ..+.|+++|+||+|+....
T Consensus 65 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---------- 133 (187)
T 1zj6_A 65 WDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKECM---------- 133 (187)
T ss_dssp EECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHH-HHHHHHHHTSGGGTTCEEEEEEECTTSTTCC----------
T ss_pred EECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHH-HHHHHHHHhchhhCCCeEEEEEECCCCcCCC----------
Confidence 89999999999999999999999999999999999998 7888877765 2579999999999997532
Q ss_pred ccCHHHHHHHHH-----HcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031970 79 PVTTAQGEELRK-----QIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 124 (150)
Q Consensus 79 ~v~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 124 (150)
..+++..... ..++ +++++||+++.|++++|+.+++.+...+.
T Consensus 134 --~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 134 --TVAEISQFLKLTSIKDHQW-HIQACCALTGEGLCQGLEWMMSRLKIRLE 181 (187)
T ss_dssp --CHHHHHHHHTGGGCCSSCE-EEEECBTTTTBTHHHHHHHHHHHHCC---
T ss_pred --CHHHHHHHhChhhhcCCCc-EEEEccCCCCcCHHHHHHHHHHHHHHHhh
Confidence 3344433332 2344 89999999999999999999999876543
No 87
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.85 E-value=6.4e-21 Score=132.88 Aligned_cols=105 Identities=15% Similarity=0.207 Sum_probs=87.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..+++.+++++|++|+|||++++.+++.+ ..|+..+.+.. .+.|+++|+||+|+...
T Consensus 72 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~----------- 139 (190)
T 1m2o_B 72 FDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEA-RVELDALFNIAELKDVPFVILGNKIDAPNA----------- 139 (190)
T ss_dssp EECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTC-----------
T ss_pred EECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHH-HHHHHHHHcchhhcCCCEEEEEECCCCcCC-----------
Confidence 89999999999999999999999999999999999998 78887776532 57999999999998752
Q ss_pred ccCHHHHHHHHHHc-----------CCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970 79 PVTTAQGEELRKQI-----------GASYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 79 ~v~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
+..+++.+.+... ...+++++||++|.|++++|+.+++.
T Consensus 140 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 140 -VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp -CCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred -CCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 2455555554321 22379999999999999999998764
No 88
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.84 E-value=7.3e-22 Score=133.68 Aligned_cols=107 Identities=10% Similarity=0.106 Sum_probs=85.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..++..+++++|++++|||++++.+++.+ ..|+..+... .++.|+++|+||+|+.+..
T Consensus 49 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---------- 117 (164)
T 1r8s_A 49 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEA-REELMRMLAEDELRDAVLLVFANKQDLPNAM---------- 117 (164)
T ss_dssp EECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC----------
T ss_pred EEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHhchhhcCCeEEEEEECcCCcCCC----------
Confidence 89999999999999999999999999999999999998 7787776553 2579999999999996542
Q ss_pred ccCHHHHHHH-----HHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 79 PVTTAQGEEL-----RKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 79 ~v~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
...+.... ++..++ +++++||+++.|++++|+.+++.+..
T Consensus 118 --~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 118 --NAAEITDKLGLHSLRHRNW-YIQATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp --CHHHHHHHTTGGGCSSCCE-EEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred --CHHHHHHHhCcccccCccE-EEEEcccCCCcCHHHHHHHHHHHHhh
Confidence 22222211 112333 79999999999999999999988753
No 89
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.84 E-value=1.1e-20 Score=130.53 Aligned_cols=108 Identities=14% Similarity=0.145 Sum_probs=88.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..++..+++++|++++|||++++.+++.+ ..|+..+.+. ..+.|+++|+||+|+.+..
T Consensus 67 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---------- 135 (186)
T 1ksh_A 67 WDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDC-QRELQSLLVEERLAGATLLIFANKQDLPGAL---------- 135 (186)
T ss_dssp EEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC----------
T ss_pred EECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHhChhcCCCcEEEEEeCccCCCCC----------
Confidence 89999999999999999999999999999999999998 7777776654 2579999999999997642
Q ss_pred ccCHHHHHHHHH-----HcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 79 PVTTAQGEELRK-----QIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 79 ~v~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
..++...... ..++ +++++||+++.|++++|+.+.+.+.+.
T Consensus 136 --~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 136 --SCNAIQEALELDSIRSHHW-RIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp --CHHHHHHHTTGGGCCSSCE-EEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred --CHHHHHHHhChhhccCCce-EEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 2233332221 2344 899999999999999999999988654
No 90
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.84 E-value=2e-20 Score=129.92 Aligned_cols=107 Identities=15% Similarity=0.209 Sum_probs=88.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCCcccccccccCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPG 76 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~D~~~~~~~~~~~~~ 76 (150)
|||+|+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+....
T Consensus 72 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------- 142 (190)
T 2h57_A 72 FDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVA-KEELDTLLNHPDIKHRRIPILFFANKMDLRDAV-------- 142 (190)
T ss_dssp EEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHH-HHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCC--------
T ss_pred EECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHH-HHHHHHHHhChhhccCCCeEEEEEeCcCcccCC--------
Confidence 89999999999999999999999999999999999998 77877776543 479999999999997532
Q ss_pred CCccCHHHHHHHHH-----HcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 77 LVPVTTAQGEELRK-----QIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 77 ~~~v~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
..+++..... ..++ +++++||+++.|++++|+.|.+.+.+
T Consensus 143 ----~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 143 ----TSVKVSQLLCLENIKDKPW-HICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp ----CHHHHHHHHTGGGCCSSCE-EEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred ----CHHHHHHHhChhhccCCce-EEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 3455555543 1244 89999999999999999999987743
No 91
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.84 E-value=5.8e-21 Score=132.06 Aligned_cols=107 Identities=19% Similarity=0.208 Sum_probs=85.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..++..+++++|++++|||++++.+++.+ ..|+..+... ..+.|+++|+||+|+.+..
T Consensus 65 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---------- 133 (181)
T 1fzq_A 65 WDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEET-GQELTELLEEEKLSCVPVLIFANKQDLLTAA---------- 133 (181)
T ss_dssp EECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHH-HHHHHHHTTCGGGTTCCEEEEEECTTSTTCC----------
T ss_pred EECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcCcccCC----------
Confidence 89999999999999999999999999999999999998 7787776543 2579999999999987642
Q ss_pred ccCHHHHHHHH-----HHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 79 PVTTAQGEELR-----KQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 79 ~v~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
..++..... ...++ +++++||++|.|++++|+.+++.+.+
T Consensus 134 --~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 134 --PASEIAEGLNLHTIRDRVW-QIQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp --CHHHHHHHTTGGGCCSSCE-EEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred --CHHHHHHHhCchhccCCce-EEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 222222221 12233 79999999999999999999987754
No 92
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.83 E-value=1.2e-20 Score=130.24 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=84.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||+|+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.+. ..+.|+++|+||+|+....
T Consensus 70 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---------- 138 (181)
T 2h17_A 70 WDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKECM---------- 138 (181)
T ss_dssp EEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC----------
T ss_pred EECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHhChhhCCCeEEEEEECCCcccCC----------
Confidence 89999999999999999999999999999999999998 7777776654 2579999999999987532
Q ss_pred ccCHHHHHHHH-----HHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970 79 PVTTAQGEELR-----KQIGASYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 79 ~v~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
...++.... ...++ +++++||+++.|++++|+.|++.
T Consensus 139 --~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 139 --TVAEISQFLKLTSIKDHQW-HIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp --CHHHHHHHTTGGGCCSSCE-EEEECBTTTTBTHHHHHHHHHTC
T ss_pred --CHHHHHHHhCcccccCCce-EEEEccCCCCcCHHHHHHHHHhh
Confidence 333333332 22343 89999999999999999998754
No 93
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.73 E-value=2.3e-22 Score=141.34 Aligned_cols=119 Identities=55% Similarity=0.922 Sum_probs=96.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~ 78 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+...|+..+....++.|+++|+||+|+........ ......
T Consensus 83 ~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~ 162 (204)
T 3th5_A 83 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 162 (204)
Confidence 999999999999999999999999999999999999973389888887767899999999999976431100 000011
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
.+..+++..+++..+..+++++||++|.|++++|+.+++.+
T Consensus 163 ~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 163 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 24567777888888865899999999999999999998765
No 94
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.83 E-value=2.8e-21 Score=134.94 Aligned_cols=107 Identities=9% Similarity=0.096 Sum_probs=81.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..+++.+++++|++|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+..
T Consensus 78 ~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~---------- 146 (192)
T 2b6h_A 78 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQES-ADELQKMLQEDELRDAVLLVFANKQDMPNAM---------- 146 (192)
T ss_dssp EECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC----------
T ss_pred EECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHhcccccCCCeEEEEEECCCCCCCC----------
Confidence 89999999999999999999999999999999999998 78877776532 479999999999986542
Q ss_pred ccCHHHHHHH-----HHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 79 PVTTAQGEEL-----RKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 79 ~v~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
...++... +...++ +++++||+++.|++++|+.|++.+.+
T Consensus 147 --~~~~i~~~~~~~~~~~~~~-~~~~~SA~~g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 147 --PVSELTDKLGLQHLRSRTW-YVQATCATQGTGLYDGLDWLSHELSK 191 (192)
T ss_dssp --CHHHHHHHTTGGGCSSCCE-EEEECBTTTTBTHHHHHHHHHHHTTT
T ss_pred --CHHHHHHHhCcccccCCce-EEEECcCCCcCCHHHHHHHHHHHHhc
Confidence 22222211 112233 79999999999999999999988753
No 95
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.83 E-value=2.3e-21 Score=134.36 Aligned_cols=115 Identities=18% Similarity=0.345 Sum_probs=92.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||+|+++|..+++.++++++++++|||++++ .+++.+ ..|+..+....++.|+++|+||+|+.+.... ..
T Consensus 61 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-------~~ 132 (184)
T 2zej_A 61 WDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAM-KPWLFNIKARASSSPVILVGTHLDVSDEKQR-------KA 132 (184)
T ss_dssp EEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTH-HHHHHHHHHHCTTCEEEEEEECGGGCCHHHH-------HH
T ss_pred EecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHH-HHHHHHHHhhCCCCcEEEEEECCCcccchhh-------HH
Confidence 99999999999999999999999999999997 578887 8999988876678999999999998754321 00
Q ss_pred cCHHHHHHHHHHcCCc---EEEEeccCCCC-CHHHHHHHHHHHHhCCC
Q 031970 80 VTTAQGEELRKQIGAS---YYIECSSKTQQ-NVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~---~~~~~Sa~~~~-~i~~~~~~l~~~~~~~~ 123 (150)
+.......+++.+++. +++++||+++. +++++++.+.+.+...+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 133 CMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp HHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhccc
Confidence 0123445666667763 39999999996 99999999999887643
No 96
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.83 E-value=6.1e-21 Score=132.33 Aligned_cols=108 Identities=15% Similarity=0.104 Sum_probs=87.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..+++.+++++|++|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+..
T Consensus 71 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---------- 139 (189)
T 2x77_A 71 WDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVA-KHELYALLDEDELRKSLLLIFANKQDLPDAA---------- 139 (189)
T ss_dssp EEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHH-HHHHHHHHTCSTTTTCEEEEEEECTTSTTCC----------
T ss_pred EECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHH-HHHHHHHHhhhhcCCCeEEEEEECCCCcCCC----------
Confidence 89999999999999999999999999999999999988 67776665432 479999999999997642
Q ss_pred ccCHHHHHH-----HHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 79 PVTTAQGEE-----LRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 79 ~v~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
...+... .+...++ +++++||+++.|++++|+.+.+.+.+.
T Consensus 140 --~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 140 --SEAEIAEQLGVSSIMNRTW-TIVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp --CHHHHHHHTTGGGCCSSCE-EEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred --CHHHHHHHhChhhccCCce-EEEEccCCCccCHHHHHHHHHHHHHhc
Confidence 1122221 1222344 799999999999999999999988643
No 97
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.83 E-value=1.4e-21 Score=146.52 Aligned_cols=118 Identities=14% Similarity=0.173 Sum_probs=87.3
Q ss_pred CCCCCcccccc---cccccccCCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCC
Q 031970 1 MNVIGQEDYNR---LRPLSYRGADVFVLAFSLVSR--ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP 75 (150)
Q Consensus 1 wDt~G~e~~~~---l~~~~~~~ad~~i~v~d~~~~--~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~ 75 (150)
|||||||+|.. +++.||++|+++|+|||++++ .+.+.. ..|+..+.+..+++|++++|||+|+.+...- ..
T Consensus 51 WDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l-~~~l~~~~~~~~~ipillvgNK~DL~~~~~R---~~ 126 (331)
T 3r7w_B 51 MELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNL-AMIIEYAYKVNPSINIEVLIHKVDGLSEDFK---VD 126 (331)
T ss_dssp EECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHH-HHHHHHHHHHCTTCEEEEECCCCCSSCSHHH---HH
T ss_pred EECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHH-HHHHHHHhhcCCCCcEEEEEECcccCchhhh---hh
Confidence 99999999964 468899999999999999998 233332 3345555555678999999999999764210 00
Q ss_pred CCCccCHHHHHHHHHH----cCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031970 76 GLVPVTTAQGEELRKQ----IGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 124 (150)
Q Consensus 76 ~~~~v~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 124 (150)
..+.|..+++..+++. .++ +|+++||++ .+|.++|..+++.++...+
T Consensus 127 ~~R~V~~~~~~~la~~~~~~~~i-~f~eTSAkd-~nV~eAFs~iv~~li~~~~ 177 (331)
T 3r7w_B 127 AQRDIMQRTGEELLELGLDGVQV-SFYLTSIFD-HSIYEAFSRIVQKLIPELS 177 (331)
T ss_dssp HHHHHHHHHHHTTSSSSCSCCCE-EEECCCSSS-SHHHHHHHHHHTTSSTTHH
T ss_pred HHHHhhHHHHHHHHhhcccccCc-eEEEeccCC-CcHHHHHHHHHHHHHhhHH
Confidence 0011355666677775 565 899999998 6999999999998876543
No 98
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.82 E-value=3.1e-20 Score=128.94 Aligned_cols=107 Identities=19% Similarity=0.222 Sum_probs=85.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+... ..+.|+++|+||+|+....
T Consensus 72 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---------- 140 (188)
T 1zd9_A 72 WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEAS-KNELHNLLDKPQLQGIPVLVLGNKRDLPGAL---------- 140 (188)
T ss_dssp EEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTCC----------
T ss_pred EECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHH-HHHHHHHHhCcccCCCCEEEEEECCCCccCC----------
Confidence 89999999999999999999999999999999999998 7777776543 2579999999999987542
Q ss_pred ccCHHHHHHHH-----HHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 79 PVTTAQGEELR-----KQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 79 ~v~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
...+..... ...++ +++++||+++.|++++|+.|++.+..
T Consensus 141 --~~~~~~~~~~~~~~~~~~~-~~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 141 --DEKELIEKMNLSAIQDREI-CCYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp --CHHHHHHHTTGGGCCSSCE-EEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred --CHHHHHHHhChhhhccCCe-eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 222222111 12233 78999999999999999999987754
No 99
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.82 E-value=6.5e-20 Score=126.18 Aligned_cols=107 Identities=9% Similarity=0.088 Sum_probs=84.1
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..++..+++++|++++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+....
T Consensus 67 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---------- 135 (183)
T 1moz_A 67 WDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTA-SKELHLMLQEEELQDAALLVFANKQDQPGAL---------- 135 (183)
T ss_dssp EEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHH-HHHHHHHTTSSTTSSCEEEEEEECTTSTTCC----------
T ss_pred EECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHcChhhCCCeEEEEEECCCCCCCC----------
Confidence 89999999999999999999999999999999999998 78887777653 579999999999987532
Q ss_pred ccCHHHHHHHHHH-----cCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 79 PVTTAQGEELRKQ-----IGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 79 ~v~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
...++...... .++ +++++||+++.|++++|+.+.+.+.+
T Consensus 136 --~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 136 --SASEVSKELNLVELKDRSW-SIVASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp --CHHHHHHHTTTTTCCSSCE-EEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHhCcccccCCce-EEEEccCCCCcCHHHHHHHHHHHHHh
Confidence 33333333221 233 79999999999999999999998753
No 100
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.79 E-value=6.6e-20 Score=139.28 Aligned_cols=119 Identities=20% Similarity=0.194 Sum_probs=93.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCccccc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS----------RASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDK 68 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~ 68 (150)
|||+||++|+.+|..||++++++|+|||+++ ..++++. ..|+..+... ..++|+||++||+|+....
T Consensus 198 wDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~-~~~~~~i~~~~~~~~~piiLv~NK~DL~~~k 276 (353)
T 1cip_A 198 FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHES-MKLFDSICNNKWFTDTSIILFLNKKDLFEEK 276 (353)
T ss_dssp EEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECHHHHHHH
T ss_pred EeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHH-HHHHHHHHcCccccCCcEEEEEECcCchhhh
Confidence 9999999999999999999999999999999 5678887 6777777653 2589999999999996433
Q ss_pred cc---ccCCCC--CCccCHHHHHHHHHH-----------cCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 69 HY---LADHPG--LVPVTTAQGEELRKQ-----------IGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 69 ~~---~~~~~~--~~~v~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
.. .....+ ...+..+++..++.. .++ .++++||+++.||.++|+.+.+.+..
T Consensus 277 i~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~etSA~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 277 IKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEI-YTHFTCATDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp HTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCE-EEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEECcCchhHHHHHHHHHHHHHH
Confidence 10 000000 012467788888762 444 88999999999999999999998874
No 101
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.79 E-value=4.1e-20 Score=139.32 Aligned_cols=108 Identities=10% Similarity=0.112 Sum_probs=80.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..++..+++.+|++|+|||++++.+++.+ ..|+..+.... +++|+++|+||+|+.+..
T Consensus 214 ~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~---------- 282 (329)
T 3o47_A 214 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEA-REELMRMLAEDELRDAVLLVFANKQDLPNAM---------- 282 (329)
T ss_dssp EECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC----------
T ss_pred EECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHH-HHHHHHHHhhhccCCCeEEEEEECccCCccc----------
Confidence 89999999999999999999999999999999999998 55555544332 589999999999987643
Q ss_pred ccCHHHHHHHH-----HHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 79 PVTTAQGEELR-----KQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 79 ~v~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
...++.... +..++ +++++||+++.||+++|+.|++.+.+.
T Consensus 283 --~~~~i~~~~~~~~~~~~~~-~~~~vSAk~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 283 --NAAEITDKLGLHSLRHRNW-YIQATCATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp --CHHHHHHHHTCTTCCSSCE-EEEECBTTTTBTHHHHHHHHHHHHTC-
T ss_pred --CHHHHHHHhchhhhhcCCC-EEEEEECCCCcCHHHHHHHHHHHHHhc
Confidence 222222211 11233 799999999999999999999988754
No 102
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.78 E-value=4.5e-19 Score=129.16 Aligned_cols=104 Identities=17% Similarity=0.256 Sum_probs=87.2
Q ss_pred CCCccccccccccccc---------------------CCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhh--CCCCCEEE
Q 031970 3 VIGQEDYNRLRPLSYR---------------------GADVFVLAFSLVSR--ASYENVLKKWIPELQHY--SPGVPVVL 57 (150)
Q Consensus 3 t~G~e~~~~l~~~~~~---------------------~ad~~i~v~d~~~~--~s~~~~~~~~~~~i~~~--~~~~piil 57 (150)
++|+++|..++..+++ +||++|+|||++++ .+++.+ ..|+..+.+. ..++|+++
T Consensus 125 ~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~-~~~l~~i~~~~~~~~~piil 203 (255)
T 3c5h_A 125 RAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQ-LKFVSNLYNQLAKTKKPIVV 203 (255)
T ss_dssp HHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHH-HHHHHHHHHHHHHTTCCEEE
T ss_pred cchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHH-HHHHHHHHHHhccCCCCEEE
Confidence 8899999999999998 79999999999998 999998 8998888765 25799999
Q ss_pred EeeCCCcccccccccCCCCCCccCHHHHHHHHHHc-CCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970 58 VGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-GASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 58 v~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
|+||+|+..... .+++..+++.. ++ +++++||+++.|++++|+.|++.+.
T Consensus 204 V~NK~Dl~~~~~------------v~~~~~~~~~~~~~-~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 204 VLTKCDEGVERY------------IRDAHTFALSKKNL-QVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp EEECGGGBCHHH------------HHHHHHHHHTSSSC-CEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEcccccccHH------------HHHHHHHHHhcCCC-eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 999999865432 25667777764 65 8999999999999999999998763
No 103
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.78 E-value=2.1e-19 Score=136.53 Aligned_cols=120 Identities=14% Similarity=0.086 Sum_probs=90.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCccccc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLV----------SRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDK 68 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~----------~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~ 68 (150)
|||+||++|+.+|..||++++++|+|||++ +..++++. ..|+..+... .+++|++||+||+|+....
T Consensus 188 wDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~-~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k 266 (354)
T 2xtz_A 188 FDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFLNKFDIFEKK 266 (354)
T ss_dssp EEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHH-HHHHHHHHTCGGGSSCEEEEEEECHHHHHHH
T ss_pred EECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHH-HHHHHHHHhccccCCCeEEEEEECcchhhhh
Confidence 999999999999999999999999999998 78899998 7777777654 2689999999999986543
Q ss_pred ccc---cC-----CC---CCCccCHHHHHHHHHH---------------cCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 69 HYL---AD-----HP---GLVPVTTAQGEELRKQ---------------IGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 69 ~~~---~~-----~~---~~~~v~~~~~~~~~~~---------------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
... .. .. .......+++..++.. .....++++||+++.||.++|+.+.+.+..
T Consensus 267 ~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~ 345 (354)
T 2xtz_A 267 VLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRR 345 (354)
T ss_dssp TTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHH
Confidence 210 00 00 0011124566666433 122256899999999999999999998863
No 104
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.78 E-value=4e-19 Score=132.69 Aligned_cols=117 Identities=15% Similarity=0.236 Sum_probs=93.3
Q ss_pred CCCCCcccc-----cccccccccCCcEEEEEEeCCChhhHHHHHHHH---HHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970 1 MNVIGQEDY-----NRLRPLSYRGADVFVLAFSLVSRASYENVLKKW---IPELQHYSPGVPVVLVGTKLDLREDKHYLA 72 (150)
Q Consensus 1 wDt~G~e~~-----~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~---~~~i~~~~~~~piilv~nK~D~~~~~~~~~ 72 (150)
|||||+++| ..+++.+++++|++|+|||++++.+++++ ..| +..+....+++|+++|+||+|+.+.....
T Consensus 57 ~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l-~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~- 134 (307)
T 3r7w_A 57 WDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKRE- 134 (307)
T ss_dssp EEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHH-
T ss_pred EECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHH-HHHHHHHHHHHHhCCCCeEEEEEecccccchhhhh-
Confidence 999999999 78889999999999999999999999987 666 44455556789999999999997621100
Q ss_pred CCCCCCccCHHHHHHHHHHcCC--cEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970 73 DHPGLVPVTTAQGEELRKQIGA--SYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
....+...++..+++.+|. .+++++||++ .++.++|..+++.++...
T Consensus 135 ---~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~li~~~ 183 (307)
T 3r7w_A 135 ---ELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLIPNM 183 (307)
T ss_dssp ---HHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTTCSCH
T ss_pred ---HHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHHcCCH
Confidence 0000255788899999873 4999999999 899999999998876543
No 105
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.77 E-value=7.2e-19 Score=124.11 Aligned_cols=109 Identities=16% Similarity=0.145 Sum_probs=77.0
Q ss_pred CCCCCcccccc-cccccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhh---CCCCCEEEEeeCCCcccccccccCCC
Q 031970 1 MNVIGQEDYNR-LRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHY---SPGVPVVLVGTKLDLREDKHYLADHP 75 (150)
Q Consensus 1 wDt~G~e~~~~-l~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~~i~~~---~~~~piilv~nK~D~~~~~~~~~~~~ 75 (150)
|||||+++|.. +++.|++++|++|+|||+++.. ++......|...+... ..+.|+++|+||+|+......
T Consensus 59 ~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----- 133 (214)
T 2fh5_B 59 IDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSA----- 133 (214)
T ss_dssp EECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCH-----
T ss_pred EECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccH-----
Confidence 89999999998 8889999999999999999954 4655545565555432 247999999999999765321
Q ss_pred CCCccCHHHHHHHHH--------------------------------Hc---CCcEEEEeccCCC------CCHHHHHHH
Q 031970 76 GLVPVTTAQGEELRK--------------------------------QI---GASYYIECSSKTQ------QNVKAVFDA 114 (150)
Q Consensus 76 ~~~~v~~~~~~~~~~--------------------------------~~---~~~~~~~~Sa~~~------~~i~~~~~~ 114 (150)
....+.+..... .. + .+|+++||++| .||+++|+.
T Consensus 134 ---~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~SAk~g~~~~~~~gv~~lf~~ 209 (214)
T 2fh5_B 134 ---KLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLK-VEFLECSAKGGRGDTGSADIQDLEKW 209 (214)
T ss_dssp ---HHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSC-EEEEECBCC-------CCBCHHHHHH
T ss_pred ---HHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCc-EEEEEeeccCCCccccccChHHHHHH
Confidence 001111111111 11 3 38999999999 999999999
Q ss_pred HHHH
Q 031970 115 AIKV 118 (150)
Q Consensus 115 l~~~ 118 (150)
|.+.
T Consensus 210 l~~~ 213 (214)
T 2fh5_B 210 LAKI 213 (214)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
No 106
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.77 E-value=3.6e-18 Score=116.80 Aligned_cols=105 Identities=15% Similarity=0.243 Sum_probs=77.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||+++|..++..+++.+|++|+|||++++...+.. .++..+.. .++|+++|+||+|+...
T Consensus 60 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~--~~l~~~~~--~~~p~ilv~nK~Dl~~~------------- 122 (178)
T 2lkc_A 60 LDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTV--EAINHAKA--ANVPIIVAINKMDKPEA------------- 122 (178)
T ss_dssp SCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHH--HHHHHHGG--GSCCEEEEEETTTSSCS-------------
T ss_pred EECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHh--CCCCEEEEEECccCCcC-------------
Confidence 99999999999999999999999999999984333322 22223332 37899999999998753
Q ss_pred CHHHHHHHHHHcCC--------cEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 81 TTAQGEELRKQIGA--------SYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 81 ~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
............+. .+++++||+++.|++++|+.|++.+...
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 123 NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhh
Confidence 22222222222221 3899999999999999999999887643
No 107
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.77 E-value=8.2e-19 Score=135.01 Aligned_cols=120 Identities=14% Similarity=0.143 Sum_probs=90.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCccccc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS----------RASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDK 68 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~ 68 (150)
|||+||++|+.+|..||++++++|+|||+++ ..++++. ..|+..+... .+++|++||+||+|+....
T Consensus 222 wDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~-~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k 300 (402)
T 1azs_C 222 FDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEA-LNLFKSIWNNRWLRTISVILFLNKQDLLAEK 300 (402)
T ss_dssp EEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHH-HHHHHHHHTCTTCSSCCEEEEEECHHHHHHH
T ss_pred cccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHH-HHHHHHHHhcccCCCCeEEEEEEChhhhhhh
Confidence 9999999999999999999999999999999 8999998 7888888764 3689999999999986543
Q ss_pred c---c--ccCCC---------------CCCccCHHHHHHHH-----HH--------cCCcEEEEeccCCCCCHHHHHHHH
Q 031970 69 H---Y--LADHP---------------GLVPVTTAQGEELR-----KQ--------IGASYYIECSSKTQQNVKAVFDAA 115 (150)
Q Consensus 69 ~---~--~~~~~---------------~~~~v~~~~~~~~~-----~~--------~~~~~~~~~Sa~~~~~i~~~~~~l 115 (150)
. . ..... +...-..+++..++ +. .++ .++++||+++.||.++|..+
T Consensus 301 i~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~-~~~~TSA~d~~nV~~vF~~v 379 (402)
T 1azs_C 301 VLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYC-YPHFTCAVDTENIRRVFNDC 379 (402)
T ss_dssp HHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCE-EEEECCTTCHHHHHHHHHHH
T ss_pred hcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCccc-EEEEEEeecCcCHHHHHHHH
Confidence 2 1 00000 00000134444442 22 133 67899999999999999999
Q ss_pred HHHHhCC
Q 031970 116 IKVVIKP 122 (150)
Q Consensus 116 ~~~~~~~ 122 (150)
...+...
T Consensus 380 ~~~I~~~ 386 (402)
T 1azs_C 380 RDIIQRM 386 (402)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888643
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.76 E-value=3.6e-19 Score=140.45 Aligned_cols=109 Identities=11% Similarity=0.126 Sum_probs=85.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.+.. .++|+|+|+||+|+....
T Consensus 371 ~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~---------- 439 (497)
T 3lvq_E 371 WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDAM---------- 439 (497)
T ss_dssp EEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHH-HHHHHHHHTSGGGTTCEEEEEEECCSSSSCC----------
T ss_pred EECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHH-HHHHHHHhhhhhcCCCcEEEEEECCCCCcCC----------
Confidence 89999999999999999999999999999999999998 77777665432 479999999999987542
Q ss_pred ccCHHHHHHHH-----HHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970 79 PVTTAQGEELR-----KQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 79 ~v~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
...+..... ...++ +++++||++|.||+++|+.|.+.+....
T Consensus 440 --~~~~~~~~~~~~~~~~~~~-~~~~~SA~~g~gi~~l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 440 --KPHEIQEKLGLTRIRDRNW-YVQPSCATSGDGLYEGLTWLTSNYKSKL 486 (497)
T ss_dssp --CHHHHHHHTTCTTCCSSCE-EEEECBTTTTBTHHHHHHHHHHHCC---
T ss_pred --CHHHHHHHhchhhhhcCCe-EEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 222222211 11222 6999999999999999999999886543
No 109
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.76 E-value=9.4e-18 Score=117.39 Aligned_cols=109 Identities=29% Similarity=0.542 Sum_probs=95.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||+|+++|..++..++++++++++|||+++..+++.+ ..|+..+.... .+.|+++|+||+|+.+...
T Consensus 59 ~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~---------- 127 (199)
T 2f9l_A 59 WDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA---------- 127 (199)
T ss_dssp EECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------
T ss_pred EECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccC----------
Confidence 89999999999999999999999999999999999987 78888776654 4789999999999976543
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+...++..++...++ .++++||+++.|++++|+.+.+.+..
T Consensus 128 ~~~~~a~~l~~~~~~-~~~d~Sal~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 128 VPTDEARAFAEKNNL-SFIETSALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp SCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 366778889999997 89999999999999999999988864
No 110
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.76 E-value=8.3e-19 Score=133.63 Aligned_cols=119 Identities=15% Similarity=0.142 Sum_probs=84.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCccccc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS----------RASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDK 68 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~ 68 (150)
|||+||++|+.+|..||++++++|+|||+++ ..++++. ..|+..+... ..++|+||++||+|+....
T Consensus 206 ~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es-~~~~~~i~~~~~~~~~piILv~NK~DL~~~k 284 (362)
T 1zcb_A 206 VDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTES-LNIFETIVNNRVFSNVSIILFLNKTDLLEEK 284 (362)
T ss_dssp EEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECHHHHHHH
T ss_pred EeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHH-HHHHHHHhcchhhCCCCEEEEEEChhhhhhh
Confidence 9999999999999999999999999999999 7899988 6777776653 3689999999999997543
Q ss_pred cc---ccC---CCCCCccCHHHHHHHHH-----------HcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 69 HY---LAD---HPGLVPVTTAQGEELRK-----------QIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 69 ~~---~~~---~~~~~~v~~~~~~~~~~-----------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
.. ... +.....+..+++..++. ..++ .++++||+++.||.++|+.+.+.+..
T Consensus 285 i~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 285 VQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPL-YHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp TTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CC-EEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEecCCchhHHHHHHHHHHHHHH
Confidence 10 000 00111246677776652 2344 78999999999999999999998864
No 111
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.76 E-value=2e-18 Score=128.58 Aligned_cols=99 Identities=18% Similarity=0.168 Sum_probs=84.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
||| |++|+.+++.|++++|++|+|||++++. +++.+ +.|+..+.. .++|+++|+||+|+.+...
T Consensus 68 wD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l-~~~l~~~~~--~~~piilv~NK~DL~~~~~---------- 132 (301)
T 1u0l_A 68 ENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII-DKFLVLAEK--NELETVMVINKMDLYDEDD---------- 132 (301)
T ss_dssp EEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH-HHHHHHHHH--TTCEEEEEECCGGGCCHHH----------
T ss_pred EEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEeHHHcCCchh----------
Confidence 899 9999999999999999999999999997 68776 899987765 4799999999999975421
Q ss_pred cCHHHHHHHHHHcC--CcEEEEeccCCCCCHHHHHHHHHH
Q 031970 80 VTTAQGEELRKQIG--ASYYIECSSKTQQNVKAVFDAAIK 117 (150)
Q Consensus 80 v~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~ 117 (150)
.+++..+++.++ . +++++||+++.|++++|..+..
T Consensus 133 --v~~~~~~~~~~~~~~-~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 133 --LRKVRELEEIYSGLY-PIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp --HHHHHHHHHHHTTTS-CEEECCTTTCTTHHHHHHHHSS
T ss_pred --HHHHHHHHHHHhhhC-cEEEEECCCCcCHHHHHHHhcC
Confidence 145667777776 6 8999999999999999987754
No 112
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.75 E-value=6.5e-19 Score=132.39 Aligned_cols=120 Identities=18% Similarity=0.177 Sum_probs=92.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCccccc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLV----------SRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDK 68 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~----------~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~ 68 (150)
|||+||++|+.+|.+||++++++|+|||++ +..++++. ..|+..+.... .++|++|++||+|+....
T Consensus 172 wDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es-~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~k 250 (327)
T 3ohm_A 172 VDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSSVILFLNKKDLLEEK 250 (327)
T ss_dssp EEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHH-HHHHHHHHTSGGGTTCEEEEEEECHHHHHHH
T ss_pred EEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHH-HHHHHHHhhhhccCCceEEEEEECchhhhhh
Confidence 999999999999999999999999999654 67788887 56666665432 579999999999997644
Q ss_pred cc------ccCCCCCCccCHHHHHHHHH----------HcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 69 HY------LADHPGLVPVTTAQGEELRK----------QIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 69 ~~------~~~~~~~~~v~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
.. +-.+.....+..+++..+.. ..++ .+.++||+++.||..+|..+.+.++..
T Consensus 251 i~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i-~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 251 IMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKII-YSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp TTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCE-EEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred hccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCc-EEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 21 00122223457777777743 3444 788999999999999999999999864
No 113
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.75 E-value=1e-18 Score=118.92 Aligned_cols=101 Identities=15% Similarity=0.136 Sum_probs=79.4
Q ss_pred CCCCCcccccc------ccccccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970 1 MNVIGQEDYNR------LRPLSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 72 (150)
Q Consensus 1 wDt~G~e~~~~------l~~~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~ 72 (150)
|||||+++|.. +.+.|++ ++|++++|+|+++.... ..|+..+.+. +.|+++|+||+|+......
T Consensus 55 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~----~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~-- 126 (165)
T 2wji_A 55 VDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERN----LYLTLQLMEM--GANLLLALNKMDLAKSLGI-- 126 (165)
T ss_dssp EECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHHH----HHHHHHHHHT--TCCEEEEEECHHHHHHTTC--
T ss_pred EECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhHh----HHHHHHHHhc--CCCEEEEEEchHhccccCh--
Confidence 89999999863 4466775 89999999999986533 3566666553 7999999999998754321
Q ss_pred CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970 73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
. .+...+++.+++ +++++||++|.|++++|+.+++.+
T Consensus 127 --------~-~~~~~~~~~~~~-~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 127 --------E-IDVDKLEKILGV-KVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp --------C-CCHHHHHHHHTS-CEEECBGGGTBSHHHHHHHHHHHT
T ss_pred --------h-hHHHHHHHHhCC-CEEEEEcCCCCCHHHHHHHHHHHh
Confidence 2 235677788887 999999999999999999998875
No 114
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.74 E-value=3.8e-18 Score=121.91 Aligned_cols=111 Identities=8% Similarity=0.050 Sum_probs=82.6
Q ss_pred CCCCCc------cc----ccccccccccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCEEEEeeCCCcccccc
Q 031970 1 MNVIGQ------ED----YNRLRPLSYRGADVFVLAFSLVSRASYENV-LKKWIPELQHYSPGVPVVLVGTKLDLREDKH 69 (150)
Q Consensus 1 wDt~G~------e~----~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~-~~~~~~~i~~~~~~~piilv~nK~D~~~~~~ 69 (150)
|||||+ ++ +..+ ..++..+|++|+|||++++.+++.. ...|+..+....++.|+++|+||+|+.....
T Consensus 81 ~DtpG~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 159 (228)
T 2qu8_A 81 IDTPGLLDRAFENRNTIEMTTI-TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDS 159 (228)
T ss_dssp EECTTTTTSCGGGCCHHHHHHH-HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--C
T ss_pred EECCCCcCcccchhhhHHHHHH-HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchh
Confidence 899999 44 3333 2357889999999999998876421 1367777766556899999999999976433
Q ss_pred cccCCCCCCccCH---HHHHHHHHHcC--CcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970 70 YLADHPGLVPVTT---AQGEELRKQIG--ASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 70 ~~~~~~~~~~v~~---~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
+.. .....++...+ + +++++||++|.||+++|+.|++.+....
T Consensus 160 ----------~~~~~~~~~~~~~~~~~~~~-~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 160 ----------LSIDNKLLIKQILDNVKNPI-KFSSFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp ----------CCHHHHHHHHHHHHHCCSCE-EEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred ----------hHHHHHHHHHHHHHhcCCCc-eEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 133 35566777665 5 8999999999999999999999887543
No 115
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.73 E-value=3.7e-17 Score=113.87 Aligned_cols=107 Identities=30% Similarity=0.547 Sum_probs=94.1
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||+|+++|..++..+++.++++++|||.++..+++.+ ..|+..+.... .+.|+++++||+|+.+...
T Consensus 83 ~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~---------- 151 (191)
T 1oix_A 83 WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA---------- 151 (191)
T ss_dssp EEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------
T ss_pred EECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------
Confidence 89999999999999999999999999999999999887 78888776543 4789999999999976433
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
+....+..++...++ .++++||+++.+++++|+.+.+.+
T Consensus 152 ~~~~~a~~l~~~~~~-~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 152 VPTDEARAFAEKNGL-SFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp SCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHh
Confidence 367788899999997 899999999999999999998865
No 116
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.72 E-value=7.2e-18 Score=134.29 Aligned_cols=108 Identities=19% Similarity=0.292 Sum_probs=89.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||++.|..++..+++.+|++|+|||+++.+ .. ..|+..+....++.|+++|+||+|+..... +
T Consensus 103 ~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~~---~~-~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~----------v 168 (535)
T 3dpu_A 103 WDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDS---NK-HYWLRHIEKYGGKSPVIVVMNKIDENPSYN----------I 168 (535)
T ss_dssp ECCCSCCTTTTTCHHHHHSSEEEEEEECGGGGG---GH-HHHHHHHHHHSSSCCEEEEECCTTTCTTCC----------C
T ss_pred EECCcHHHHHHHHHHHccCCcEEEEEEeCCCch---hH-HHHHHHHHHhCCCCCEEEEEECCCcccccc----------c
Confidence 899999999999999999999999999998763 44 678888888877899999999999976543 3
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970 81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
..+.+...+...++ +++++||++|.||+++++.+.+.+.+.+
T Consensus 169 ~~~~~~~~~~~~~~-~~~~vSA~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 169 EQKKINERFPAIEN-RFHRISCKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp CHHHHHHHCGGGTT-CEEECCC-----CTTHHHHHHHHHTCTT
T ss_pred CHHHHHHHHHhcCC-ceEEEecCcccCHHHHHHHHHHHHhccc
Confidence 67778888888887 8999999999999999999999987654
No 117
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.71 E-value=3.7e-18 Score=117.85 Aligned_cols=109 Identities=17% Similarity=0.237 Sum_probs=86.9
Q ss_pred CCCCC-----------cccccccccccccC-CcEEEEEEeCCChhhHHHHHHHHHHH--------Hhh-h-CCCCCEEEE
Q 031970 1 MNVIG-----------QEDYNRLRPLSYRG-ADVFVLAFSLVSRASYENVLKKWIPE--------LQH-Y-SPGVPVVLV 58 (150)
Q Consensus 1 wDt~G-----------~e~~~~l~~~~~~~-ad~~i~v~d~~~~~s~~~~~~~~~~~--------i~~-~-~~~~piilv 58 (150)
||||| +++|..++..|+++ ++++++||++.+..+++.+...|... +.. . ..+.|+++|
T Consensus 49 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv 128 (190)
T 2cxx_A 49 IDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVA 128 (190)
T ss_dssp EECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEE
T ss_pred EECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEE
Confidence 89999 88899988889988 88888888888888888765666542 111 1 147999999
Q ss_pred eeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCc------EEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS------YYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 59 ~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~------~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
+||+|+... ..+....+++.++.. +++++||++|.|++++|+.+++.+.+.
T Consensus 129 ~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 129 VNKLDKIKN-------------VQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp EECGGGCSC-------------HHHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred eehHhccCc-------------HHHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 999998753 245677788888862 379999999999999999999988754
No 118
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.70 E-value=9.4e-18 Score=126.59 Aligned_cols=119 Identities=18% Similarity=0.202 Sum_probs=89.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCccccc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLV----------SRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDK 68 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~----------~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~ 68 (150)
|||+||++|+.+|..||++++++|+|||++ +..++.+. ..|+..+.... .++|++|++||+|+....
T Consensus 166 wDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es-~~~~~~i~~~~~~~~~piiLv~NK~DL~~ek 244 (340)
T 4fid_A 166 IDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTES-IAVFKDIMTNEFLKGAVKLIFLNKMDLFEEK 244 (340)
T ss_dssp EECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHH-HHHHHHHHHCGGGTTSEEEEEEECHHHHHHH
T ss_pred ccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHH-HHHHHHHhhhhccCCCeEEEEEECchhhhhh
Confidence 999999999999999999999999999999 78889888 56666665432 589999999999987543
Q ss_pred ccc---c---CCCCCCccCHHHHHHHHHH-c-------------------------CCcEEEEeccCCCCCHHHHHHHHH
Q 031970 69 HYL---A---DHPGLVPVTTAQGEELRKQ-I-------------------------GASYYIECSSKTQQNVKAVFDAAI 116 (150)
Q Consensus 69 ~~~---~---~~~~~~~v~~~~~~~~~~~-~-------------------------~~~~~~~~Sa~~~~~i~~~~~~l~ 116 (150)
... . .+.... ...+++..++.. + +...+.++||++..||..+|..+.
T Consensus 245 i~~~~l~~~fp~y~g~-~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~ 323 (340)
T 4fid_A 245 LTKVPLNTIFPEYTGG-DNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAV 323 (340)
T ss_dssp HHHSCGGGTCTTCCCT-TCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHH
T ss_pred cCcchHHHhhhhhcCC-CCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHH
Confidence 210 0 011111 145555444432 2 123788999999999999999999
Q ss_pred HHHhC
Q 031970 117 KVVIK 121 (150)
Q Consensus 117 ~~~~~ 121 (150)
+.++.
T Consensus 324 ~~Il~ 328 (340)
T 4fid_A 324 DVIMK 328 (340)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99886
No 119
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.69 E-value=1.3e-17 Score=112.16 Aligned_cols=100 Identities=19% Similarity=0.176 Sum_probs=74.2
Q ss_pred CCCCCcccc-------cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccC
Q 031970 1 MNVIGQEDY-------NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD 73 (150)
Q Consensus 1 wDt~G~e~~-------~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~ 73 (150)
|||||++.+ ...+..+++.+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+...
T Consensus 54 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~---- 125 (161)
T 2dyk_A 54 VDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHEL---- 125 (161)
T ss_dssp EECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGGG----
T ss_pred EECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccchH----
Confidence 899999984 3445568899999999999998655433 223333333 3689999999999876421
Q ss_pred CCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970 74 HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 74 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
++..++ .++..+++++||+++.|++++|+.+++.+
T Consensus 126 ----------~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 126 ----------YLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp ----------GCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred ----------hHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 222333 45655799999999999999999998865
No 120
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.69 E-value=7.6e-17 Score=111.85 Aligned_cols=107 Identities=21% Similarity=0.241 Sum_probs=79.3
Q ss_pred CCCCC----------cccccccccccccCC---cEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970 1 MNVIG----------QEDYNRLRPLSYRGA---DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 67 (150)
Q Consensus 1 wDt~G----------~e~~~~l~~~~~~~a---d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 67 (150)
||||| ++.|..++..+++.+ |++++|+|++++.++.+. .+...+.. .+.|+++|+||+|+...
T Consensus 74 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~p~i~v~nK~Dl~~~ 149 (195)
T 1svi_A 74 VDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKY--YGIPVIVIATKADKIPK 149 (195)
T ss_dssp EECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCG
T ss_pred EECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCCh
Confidence 89999 889998888888887 999999999998887764 23333333 47899999999999765
Q ss_pred cccccCCCCCCccCHHHHHH-HHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970 68 KHYLADHPGLVPVTTAQGEE-LRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 68 ~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
... ....+++.. +....+ .+++++||+++.|++++|+.+.+.+.
T Consensus 150 ~~~--------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 150 GKW--------DKHAKVVRQTLNIDPE-DELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp GGH--------HHHHHHHHHHHTCCTT-SEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHH--------HHHHHHHHHHHcccCC-CceEEEEccCCCCHHHHHHHHHHHhc
Confidence 421 001122222 222234 48999999999999999999998764
No 121
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.68 E-value=1e-16 Score=119.73 Aligned_cols=109 Identities=14% Similarity=0.141 Sum_probs=89.9
Q ss_pred CCCCCccccc----------ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc
Q 031970 1 MNVIGQEDYN----------RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY 70 (150)
Q Consensus 1 wDt~G~e~~~----------~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~ 70 (150)
|||||+.++. .....+++++|++++|+|++++.++++. ..|+..+... +.|+++|+||+|+.....
T Consensus 64 vDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~-~~~~~~l~~~--~~pvilV~NK~Dl~~~~~- 139 (308)
T 3iev_A 64 LDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDE-EIYQNFIKPL--NKPVIVVINKIDKIGPAK- 139 (308)
T ss_dssp EECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHHHTGGG--CCCEEEEEECGGGSSSGG-
T ss_pred EECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhH-HHHHHHHHhc--CCCEEEEEECccCCCCHH-
Confidence 8999997654 5566789999999999999999888886 6778877763 789999999999973222
Q ss_pred ccCCCCCCccCHHHHHHHHHHcC-CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 71 LADHPGLVPVTTAQGEELRKQIG-ASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 71 ~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
........+.+.++ ..+++++||+++.|++++|+.+.+.+.+.
T Consensus 140 ---------~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 140 ---------NVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp ---------GGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred ---------HHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence 25667777888774 45899999999999999999999998654
No 122
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.68 E-value=5.6e-17 Score=112.22 Aligned_cols=108 Identities=16% Similarity=0.246 Sum_probs=81.7
Q ss_pred CCCCC----------cccccccccccccCC---cEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970 1 MNVIG----------QEDYNRLRPLSYRGA---DVFVLAFSLVSRASYENV-LKKWIPELQHYSPGVPVVLVGTKLDLRE 66 (150)
Q Consensus 1 wDt~G----------~e~~~~l~~~~~~~a---d~~i~v~d~~~~~s~~~~-~~~~~~~i~~~~~~~piilv~nK~D~~~ 66 (150)
||||| ++.|..+++.+++.+ |++++|+|+++..+.... +..|+... +.|+++|+||+|+.+
T Consensus 73 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~ 147 (195)
T 3pqc_A 73 VDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVK 147 (195)
T ss_dssp EECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSC
T ss_pred EECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCC
Confidence 89999 888888888888876 999999999886544432 13343322 689999999999975
Q ss_pred ccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 67 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 67 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
... ..+..+++..++...+..+++++||+++.|++++|+.+.+.+.+
T Consensus 148 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 148 MSE--------RAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp GGG--------HHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred hHH--------HHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 432 11244566677776564589999999999999999999988753
No 123
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.67 E-value=3.3e-17 Score=113.13 Aligned_cols=105 Identities=15% Similarity=0.127 Sum_probs=82.6
Q ss_pred CCCCCccccc------cccccccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970 1 MNVIGQEDYN------RLRPLSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 72 (150)
Q Consensus 1 wDt~G~e~~~------~l~~~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~ 72 (150)
|||||+++|. .++..+++ .+|++++|+|.++ ++.. ..|+..+.. .+.|+++|+||+|+......
T Consensus 59 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~-~~~~~~~~~--~~~piilv~nK~Dl~~~~~~-- 130 (188)
T 2wjg_A 59 VDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERN-LYLTLQLME--MGANLLLALNKMDLAKSLGI-- 130 (188)
T ss_dssp EECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHH-HHHHHHHHT--TTCCEEEEEECHHHHHHTTC--
T ss_pred EECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHH-HHHHHHHHh--cCCCEEEEEEhhhccccccc--
Confidence 8999999986 34566665 5999999999976 4444 567766665 37899999999998764331
Q ss_pred CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970 73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
. .....+++.+++ +++++||+++.|++++|+.+++.+.+..
T Consensus 131 --------~-~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 131 --------E-IDVDKLEKILGV-KVVPLSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp --------C-CCHHHHHHHHTS-CEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred --------h-HHHHHHHHHhCC-CeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence 2 345677888887 9999999999999999999999987654
No 124
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.65 E-value=1.6e-17 Score=113.97 Aligned_cols=102 Identities=14% Similarity=0.135 Sum_probs=75.5
Q ss_pred CCCCCcccccccc--------cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccc
Q 031970 1 MNVIGQEDYNRLR--------PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYL 71 (150)
Q Consensus 1 wDt~G~e~~~~l~--------~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~ 71 (150)
|||||++++.... ..+++++|++++|||++++.+++. ..|+..+.+.. .++|+++|+||+|+......
T Consensus 57 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~- 133 (172)
T 2gj8_A 57 IDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP--AEIWPEFIARLPAKLPITVVRNKADITGETLG- 133 (172)
T ss_dssp EECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH--HHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-
T ss_pred EECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHHhcccCCCEEEEEECccCCcchhh-
Confidence 8999998643211 136899999999999999988874 46777776654 47999999999998643211
Q ss_pred cCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 72 ADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 72 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
+++..+. +++++||+++.|++++|+.+.+.+...
T Consensus 134 ----------------~~~~~~~-~~~~~SA~~g~gv~~l~~~l~~~~~~~ 167 (172)
T 2gj8_A 134 ----------------MSEVNGH-ALIRLSARTGEGVDVLRNHLKQSMGFD 167 (172)
T ss_dssp ----------------EEEETTE-EEEECCTTTCTTHHHHHHHHHHHC---
T ss_pred ----------------hhhccCC-ceEEEeCCCCCCHHHHHHHHHHHhhhc
Confidence 0111343 899999999999999999999887543
No 125
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.63 E-value=3.7e-16 Score=122.32 Aligned_cols=106 Identities=21% Similarity=0.227 Sum_probs=83.9
Q ss_pred CCCCC----------cccccccccc-cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccc
Q 031970 1 MNVIG----------QEDYNRLRPL-SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 69 (150)
Q Consensus 1 wDt~G----------~e~~~~l~~~-~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~ 69 (150)
||||| +|+|..++.. +++.||++|+|+|+++..+.++ ..|...+.. .+.|+++|+||+|+.+...
T Consensus 248 ~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~ 323 (456)
T 4dcu_A 248 VDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHE--AGKAVVIVVNKWDAVDKDE 323 (456)
T ss_dssp TTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH--TTCEEEEEEECGGGSCCCS
T ss_pred EECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHH--cCCCEEEEEEChhcCCCch
Confidence 99999 8888887765 8899999999999998766555 466666665 4799999999999986543
Q ss_pred cccCCCCCCccCHHHHHHHHHHc----CCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970 70 YLADHPGLVPVTTAQGEELRKQI----GASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 70 ~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
+..+++.+.++.. +..+++++||++|.|++++|+.+.+.+.
T Consensus 324 ----------~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~ 368 (456)
T 4dcu_A 324 ----------STMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASE 368 (456)
T ss_dssp ----------SHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHH
Confidence 2445555555544 2358999999999999999999988774
No 126
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.63 E-value=5.7e-16 Score=113.02 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=81.5
Q ss_pred CCCCCcccccccc------cccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970 1 MNVIGQEDYNRLR------PLSY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 72 (150)
Q Consensus 1 wDt~G~e~~~~l~------~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~ 72 (150)
|||||++.+...+ +.|+ ..+|++++|+|+++..+.. .|...+... +.|+++|+||+|+......
T Consensus 57 ~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~----~~~~~l~~~--~~pvilv~NK~Dl~~~~~i-- 128 (258)
T 3a1s_A 57 IDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSL----YLLLEILEM--EKKVILAMTAIDEAKKTGM-- 128 (258)
T ss_dssp EECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHH----HHHHHHHTT--TCCEEEEEECHHHHHHTTC--
T ss_pred EECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHH----HHHHHHHhc--CCCEEEEEECcCCCCccch--
Confidence 8999999987643 5566 5899999999999976543 355555543 7999999999998764431
Q ss_pred CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
. .....+++.+++ +++++||++|.|++++|+.+.+.+..
T Consensus 129 --------~-~~~~~l~~~lg~-~vi~~SA~~g~gi~el~~~i~~~~~~ 167 (258)
T 3a1s_A 129 --------K-IDRYELQKHLGI-PVVFTSSVTGEGLEELKEKIVEYAQK 167 (258)
T ss_dssp --------C-BCHHHHHHHHCS-CEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred --------H-HHHHHHHHHcCC-CEEEEEeeCCcCHHHHHHHHHHHhhc
Confidence 2 235677888897 99999999999999999999998753
No 127
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.63 E-value=1.8e-16 Score=116.50 Aligned_cols=102 Identities=15% Similarity=0.162 Sum_probs=80.5
Q ss_pred CCCCCccccc------cccccccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970 1 MNVIGQEDYN------RLRPLSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 72 (150)
Q Consensus 1 wDt~G~e~~~------~l~~~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~ 72 (150)
|||||++.|. .+.+.|+. ++|++|+|+|+++.++.. .|...+.+ .++|+++|+||+|+......
T Consensus 54 ~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~~----~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~-- 125 (272)
T 3b1v_A 54 QDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERNL----YLTTQLIE--TGIPVTIALNMIDVLDGQGK-- 125 (272)
T ss_dssp EECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHH----HHHHHHHH--TCSCEEEEEECHHHHHHTTC--
T ss_pred EECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhHH----HHHHHHHh--cCCCEEEEEEChhhCCcCCc--
Confidence 8999999987 35566776 599999999999876543 45555554 37999999999998754331
Q ss_pred CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970 73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
. .....+++.+++ +++++||++|.|++++|+.+++.+.
T Consensus 126 --------~-~~~~~l~~~lg~-~vi~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 126 --------K-INVDKLSYHLGV-PVVATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp --------C-CCHHHHHHHHTS-CEEECBTTTTBSHHHHHHHHHHSCT
T ss_pred --------H-HHHHHHHHHcCC-CEEEEEccCCCCHHHHHHHHHHHHh
Confidence 2 345677788887 9999999999999999999998764
No 128
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.62 E-value=8.2e-16 Score=108.90 Aligned_cols=111 Identities=10% Similarity=0.041 Sum_probs=78.7
Q ss_pred CCCCC----------cccccccccccccC---CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970 1 MNVIG----------QEDYNRLRPLSYRG---ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 67 (150)
Q Consensus 1 wDt~G----------~e~~~~l~~~~~~~---ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 67 (150)
||||| ++.|..+...|++. +|++++|+|+++..+... ..|+..+.. .+.|+++|+||+|+...
T Consensus 84 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~--~~~p~i~v~nK~Dl~~~ 159 (223)
T 4dhe_A 84 VDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAP--TGKPIHSLLTKCDKLTR 159 (223)
T ss_dssp EECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGG--GCCCEEEEEECGGGSCH
T ss_pred EcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHh--cCCCEEEEEeccccCCh
Confidence 89999 56667777777776 788999999998655444 356666665 36899999999998764
Q ss_pred cccccCCCCCCccCHHHHHHHHHHc------CCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970 68 KHYLADHPGLVPVTTAQGEELRKQI------GASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 68 ~~~~~~~~~~~~v~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
... .............+ ...+++++||+++.|++++|+.|.+.+....
T Consensus 160 ~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 160 QES--------INALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp HHH--------HHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred hhH--------HHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 321 00112223333332 3358999999999999999999999887553
No 129
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.61 E-value=3.9e-16 Score=116.25 Aligned_cols=105 Identities=14% Similarity=0.144 Sum_probs=79.3
Q ss_pred CCCCCccc--------ccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970 1 MNVIGQED--------YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 72 (150)
Q Consensus 1 wDt~G~e~--------~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~ 72 (150)
|||||+++ +......+++++|++++|+|++++.+..+ ..+.+.+....++.|+++|+||+|+.+...
T Consensus 60 ~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~--- 134 (301)
T 1wf3_A 60 VDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPE--- 134 (301)
T ss_dssp EECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHH---
T ss_pred ecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCchH---
Confidence 89999887 45556678999999999999998766654 344566766555799999999999875321
Q ss_pred CCCCCCccCHHHHHHHHHH-cCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 73 DHPGLVPVTTAQGEELRKQ-IGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
. .....+. .+..+++++||+++.|++++++.+.+.+.+
T Consensus 135 ----------~-~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 135 ----------E-AMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp ----------H-HHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred ----------H-HHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 0 1222222 344579999999999999999999987754
No 130
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.60 E-value=1.8e-15 Score=116.76 Aligned_cols=113 Identities=12% Similarity=0.062 Sum_probs=83.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||+++|......+++.+|++|+|+|+++..++... .+|+..+.... ..|+++|+||+|+.+.... ..
T Consensus 80 iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt-~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~--------~~ 149 (403)
T 3sjy_A 80 IDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT-REHFVALGIIG-VKNLIIVQNKVDVVSKEEA--------LS 149 (403)
T ss_dssp EECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHH-HHHHHHHHHHT-CCCEEEEEECGGGSCHHHH--------HH
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHH-HHHHHHHHHcC-CCCEEEEEECccccchHHH--------HH
Confidence 89999999999999999999999999999998755555 56665555442 3589999999999764321 00
Q ss_pred CHHHHHHHHHHcC--CcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970 81 TTAQGEELRKQIG--ASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 81 ~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
..+++..+...++ ..+++++||+++.|++++++.|.+.+..+.
T Consensus 150 ~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~ 194 (403)
T 3sjy_A 150 QYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY 194 (403)
T ss_dssp HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence 1123333333221 238999999999999999999999876543
No 131
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.60 E-value=2.2e-16 Score=115.15 Aligned_cols=100 Identities=15% Similarity=0.193 Sum_probs=77.8
Q ss_pred CCCCCcccccc----------cccccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccc
Q 031970 1 MNVIGQEDYNR----------LRPLSY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 68 (150)
Q Consensus 1 wDt~G~e~~~~----------l~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~ 68 (150)
|||||+..+.. +.+.|+ ..+|++|+|+|+++.+++..+ ...+... +.|+++|+||+|+....
T Consensus 53 vDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l----~~~l~~~--~~pvilv~NK~Dl~~~~ 126 (256)
T 3iby_A 53 TDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYL----TSQLFEL--GKPVVVALNMMDIAEHR 126 (256)
T ss_dssp EECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHH----HHHHTTS--CSCEEEEEECHHHHHHT
T ss_pred EeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHH----HHHHHHc--CCCEEEEEEChhcCCcC
Confidence 89999998875 455677 899999999999997666543 3333332 78999999999987654
Q ss_pred ccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970 69 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 69 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
. .......+.+.+++ +++++||++|.|++++|+.+.+.
T Consensus 127 ~-----------~~~~~~~l~~~lg~-~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 127 G-----------ISIDTEKLESLLGC-SVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp T-----------CEECHHHHHHHHCS-CEEECBGGGTBSHHHHHHHHHTC
T ss_pred C-----------cHHHHHHHHHHcCC-CEEEEECCCCCCHHHHHHHHHhh
Confidence 3 11224457777887 99999999999999999999887
No 132
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.59 E-value=8.8e-16 Score=119.53 Aligned_cols=106 Identities=19% Similarity=0.223 Sum_probs=80.7
Q ss_pred CCCCCc----------cccccccc-ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccc
Q 031970 1 MNVIGQ----------EDYNRLRP-LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 69 (150)
Q Consensus 1 wDt~G~----------e~~~~l~~-~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~ 69 (150)
|||||+ |+|..++. .+++.||++++|+|++++.++++. .|...+.. .+.|+++|+||+|+.+...
T Consensus 228 ~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~--~~~~iiiv~NK~Dl~~~~~ 303 (436)
T 2hjg_A 228 VDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHE--AGKAVVIVVNKWDAVDKDE 303 (436)
T ss_dssp TTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSCCCT
T ss_pred EECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHH--cCCcEEEEEECccCCCcch
Confidence 999998 66665554 488899999999999999998885 67776664 3799999999999976432
Q ss_pred cccCCCCCCccCHHHH-HHHHHHc---CCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970 70 YLADHPGLVPVTTAQG-EELRKQI---GASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 70 ~~~~~~~~~~v~~~~~-~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
. ...+. ..+.+.+ +..+++++||++|.|++++|+.+.+.+.
T Consensus 304 ~----------~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 304 S----------TMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASE 348 (436)
T ss_dssp T----------HHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred H----------HHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHH
Confidence 1 22222 2222222 3348999999999999999999988775
No 133
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.59 E-value=2e-15 Score=121.47 Aligned_cols=107 Identities=19% Similarity=0.279 Sum_probs=87.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||+++|...+..+++.+|++|+|+|+++..+.+.. ..|...... ++|+++|+||+|+....
T Consensus 76 iDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~-~~~~~~~~~---~ipiIvViNKiDl~~a~------------ 139 (599)
T 3cb4_D 76 IDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTL-ANCYTAMEM---DLEVVPVLNKIDLPAAD------------ 139 (599)
T ss_dssp EECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHH-HHHHHHHHT---TCEEEEEEECTTSTTCC------------
T ss_pred EECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHHC---CCCEEEeeeccCccccc------------
Confidence 89999999999999999999999999999998777776 667655543 68999999999997642
Q ss_pred CHHHHHHHHHHcCCc--EEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970 81 TTAQGEELRKQIGAS--YYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
......++...+++. +++++||++|.|++++++.+++.+..+.
T Consensus 140 ~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~ 184 (599)
T 3cb4_D 140 PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPE 184 (599)
T ss_dssp HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence 233445566666652 4899999999999999999999987654
No 134
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.59 E-value=3e-15 Score=120.32 Aligned_cols=107 Identities=13% Similarity=0.225 Sum_probs=87.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||+++|......+++.+|++|+|+|+++..+.+.. ..|..... .++|+++|+||+|+....
T Consensus 78 iDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~-~~~~~a~~---~~ipiIvviNKiDl~~a~------------ 141 (600)
T 2ywe_A 78 IDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAVE---QDLVIIPVINKIDLPSAD------------ 141 (600)
T ss_dssp ECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHH-HHHHHHHH---TTCEEEEEEECTTSTTCC------------
T ss_pred EECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---CCCCEEEEEeccCccccC------------
Confidence 89999999999888999999999999999998888776 67765544 379999999999987642
Q ss_pred CHHHHHHHHHHcCCc--EEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970 81 TTAQGEELRKQIGAS--YYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
......++...+++. +++++||++|.|++++++.+++.+..+.
T Consensus 142 ~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 142 VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPK 186 (600)
T ss_dssp HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence 223445566666652 4899999999999999999999987654
No 135
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.58 E-value=4.8e-15 Score=116.52 Aligned_cols=102 Identities=12% Similarity=0.124 Sum_probs=68.3
Q ss_pred CCCCCcccccccc--------cccccCCcEEEEEEeCCChhhHHHH--HHHHHHHHhhhCCCCCEEEEeeCCCccccccc
Q 031970 1 MNVIGQEDYNRLR--------PLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHY 70 (150)
Q Consensus 1 wDt~G~e~~~~l~--------~~~~~~ad~~i~v~d~~~~~s~~~~--~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~ 70 (150)
|||||++++...+ ..+++.+|++|+|+|++++.+++.+ ...|+..+. +.|+++|+||+|+.....
T Consensus 286 iDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~----~~piIvV~NK~Dl~~~~~- 360 (476)
T 3gee_A 286 TDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP----AAKFLTVANKLDRAANAD- 360 (476)
T ss_dssp EC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT----TSEEEEEEECTTSCTTTH-
T ss_pred EECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC----CCCEEEEEECcCCCCccc-
Confidence 8999998877544 3478999999999999999887432 034444433 799999999999876532
Q ss_pred ccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970 71 LADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
.....+.+. +..+++++||+++.|++++++.+.+.+.
T Consensus 361 ------------~~~~~l~~~-~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 361 ------------ALIRAIADG-TGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp ------------HHHHHHHHH-HTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred ------------hhHHHHHhc-CCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 112334333 2248999999999999999999999887
No 136
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.57 E-value=9.4e-16 Score=118.91 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=82.8
Q ss_pred CCCCCcccccccccc-------cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccC
Q 031970 1 MNVIGQEDYNRLRPL-------SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD 73 (150)
Q Consensus 1 wDt~G~e~~~~l~~~-------~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~ 73 (150)
|||||+++|..+... +++.+|++|+|+|++... .. ..|+..+... +.|+++|+||+|+.....
T Consensus 88 iDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~-~~---~~~l~~l~~~--~~piIvV~NK~Dl~~~~~---- 157 (423)
T 3qq5_A 88 VDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTP-YE---DDVVNLFKEM--EIPFVVVVNKIDVLGEKA---- 157 (423)
T ss_dssp EECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCH-HH---HHHHHHHHHT--TCCEEEECCCCTTTTCCC----
T ss_pred EECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChH-HH---HHHHHHHHhc--CCCEEEEEeCcCCCCccH----
Confidence 899999999877544 788999999999994332 22 4567666665 799999999999986542
Q ss_pred CCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 74 HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 74 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
.+....+++.+++ +++++||+++.|++++|+.+.+.+.+.
T Consensus 158 --------~~~~~~l~~~~g~-~v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 158 --------EELKGLYESRYEA-KVLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp --------THHHHHSSCCTTC-CCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred --------HHHHHHHHHHcCC-CEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 2556667777786 999999999999999999999998544
No 137
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.57 E-value=3.4e-16 Score=115.06 Aligned_cols=104 Identities=14% Similarity=0.174 Sum_probs=78.1
Q ss_pred CCCCCcccccccc----------cccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccc
Q 031970 1 MNVIGQEDYNRLR----------PLSY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 68 (150)
Q Consensus 1 wDt~G~e~~~~l~----------~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~ 68 (150)
|||||++++..+. +.|+ ..+|++|+|+|+++.++.... ...+... ++|+++|+||+|+....
T Consensus 55 iDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~----~~~l~~~--~~p~ivv~NK~Dl~~~~ 128 (274)
T 3i8s_A 55 VDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYL----TLQLLEL--GIPCIVALNMLDIAEKQ 128 (274)
T ss_dssp EECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHH----HHHHHHH--TCCEEEEEECHHHHHHT
T ss_pred EECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHH----HHHHHhc--CCCEEEEEECccchhhh
Confidence 8999999987432 2233 699999999999997665443 3333333 68999999999987643
Q ss_pred ccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 69 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 69 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
. .......+++.+++ +++++||++|.|++++|+.+.+.+...
T Consensus 129 ~-----------~~~~~~~l~~~lg~-~~i~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 129 N-----------IRIEIDALSARLGC-PVIPLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp T-----------EEECHHHHHHHHTS-CEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred h-----------HHHHHHHHHHhcCC-CEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 2 11234567777887 999999999999999999998877644
No 138
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.57 E-value=3.4e-16 Score=110.63 Aligned_cols=101 Identities=6% Similarity=0.087 Sum_probs=70.4
Q ss_pred CCCCCcccccccccccccC----CcEEEEEEeCC-ChhhHHHHHHHHHHHHhhh-----CCCCCEEEEeeCCCccccccc
Q 031970 1 MNVIGQEDYNRLRPLSYRG----ADVFVLAFSLV-SRASYENVLKKWIPELQHY-----SPGVPVVLVGTKLDLREDKHY 70 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~----ad~~i~v~d~~-~~~s~~~~~~~~~~~i~~~-----~~~~piilv~nK~D~~~~~~~ 70 (150)
|||||+++|..++..+++. +|++|+|||++ ++.++..+ ..|+..+... ..++|+++|+||+|+......
T Consensus 60 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 138 (218)
T 1nrj_B 60 VDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTARPP 138 (218)
T ss_dssp EECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred EECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhcccCCH
Confidence 8999999999999888887 99999999999 88898887 6777666543 257999999999999765421
Q ss_pred ccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 031970 71 LADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN 107 (150)
Q Consensus 71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 107 (150)
. .......+++..++...+. +++++||+++.+
T Consensus 139 ~----~~~~~l~~~~~~~~~~~~~-~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 139 S----KIKDALESEIQKVIERRKK-SLNEVERKINEE 170 (218)
T ss_dssp H----HHHHHHHHHHHHHHHHHHH-HHHC--------
T ss_pred H----HHHHHHHHHHHHHHHHHhc-cccccccccccc
Confidence 0 0000013556677777775 899999998765
No 139
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.56 E-value=1.5e-14 Score=109.98 Aligned_cols=107 Identities=16% Similarity=0.164 Sum_probs=83.4
Q ss_pred CCCCCccccccc---------ccccccCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccc
Q 031970 1 MNVIGQEDYNRL---------RPLSYRGADVFVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 69 (150)
Q Consensus 1 wDt~G~e~~~~l---------~~~~~~~ad~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~ 69 (150)
|||||+.++... ...+...+|++++|+|++++. +++.. ..|+..+....++.|+++|+||+|+.....
T Consensus 219 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~-~~~~~~i~~~~~~~piilV~NK~Dl~~~~~ 297 (357)
T 2e87_A 219 IDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQ-IHLFEEVHGEFKDLPFLVVINKIDVADEEN 297 (357)
T ss_dssp EECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHH-HHHHHHHHHHTTTSCEEEEECCTTTCCHHH
T ss_pred EeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHH-HHHHHHHHHhcCCCCEEEEEECcccCChHH
Confidence 899998764321 112445799999999999877 67776 788888887655899999999999875432
Q ss_pred cccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 70 YLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 70 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
..+...++...+. +++++||++|.|++++++.+.+.+..
T Consensus 298 ------------~~~~~~~~~~~~~-~~~~iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 298 ------------IKRLEKFVKEKGL-NPIKISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp ------------HHHHHHHHHHTTC-CCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHhcCC-CeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence 2445566667776 89999999999999999999998854
No 140
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.55 E-value=1.8e-14 Score=107.37 Aligned_cols=98 Identities=16% Similarity=0.114 Sum_probs=81.2
Q ss_pred CcccccccccccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccC-H
Q 031970 5 GQEDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT-T 82 (150)
Q Consensus 5 G~e~~~~l~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~-~ 82 (150)
.+++++.+.+.+++++|++++|+|++++. +++.+ +.|+..+.. .++|+++|+||+|+.+... +. .
T Consensus 65 i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l-~~~l~~~~~--~~~~~ilV~NK~DL~~~~~----------v~~~ 131 (302)
T 2yv5_A 65 VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLL-DNMLVVYEY--FKVEPVIVFNKIDLLNEEE----------KKEL 131 (302)
T ss_dssp ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHH-HHHHHHHHH--TTCEEEEEECCGGGCCHHH----------HHHH
T ss_pred eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHH-HHHHHHHHh--CCCCEEEEEEcccCCCccc----------cHHH
Confidence 38899999999999999999999999986 88876 899887765 4799999999999975431 11 3
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHH
Q 031970 83 AQGEELRKQIGASYYIECSSKTQQNVKAVFDAAI 116 (150)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 116 (150)
.+...+++..+. +++++||+++.|+++++..+.
T Consensus 132 ~~~~~~~~~~g~-~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 132 ERWISIYRDAGY-DVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHTT
T ss_pred HHHHHHHHHCCC-eEEEEECCCCCCHHHHHhhcc
Confidence 455666777787 999999999999999998764
No 141
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.55 E-value=4.1e-15 Score=112.51 Aligned_cols=109 Identities=17% Similarity=0.269 Sum_probs=86.3
Q ss_pred CCCCCccc----ccccccccccC---CcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccc
Q 031970 1 MNVIGQED----YNRLRPLSYRG---ADVFVLAFSLVS---RASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLRED 67 (150)
Q Consensus 1 wDt~G~e~----~~~l~~~~~~~---ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~~~ 67 (150)
|||||+.+ +..+...+++. ++++|+|+|+++ +.+++++ ..|..++.... .++|+++|+||+|+...
T Consensus 211 ~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~-~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~ 289 (342)
T 1lnz_A 211 ADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDY-LTINQELSEYNLRLTERPQIIVANKMDMPEA 289 (342)
T ss_dssp EEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHH-HHHHHHHHHSCSSTTTSCBCBEEECTTSTTH
T ss_pred ecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHH-HHHHHHHHHhhhhhcCCCEEEEEECccCCCC
Confidence 89999654 44565666554 999999999998 7888887 88988888765 37999999999998642
Q ss_pred cccccCCCCCCccCHHHHHHHHHHcCC-cEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031970 68 KHYLADHPGLVPVTTAQGEELRKQIGA-SYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 124 (150)
Q Consensus 68 ~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 124 (150)
.+....+++.++. .+++++||+++.|++++++.|.+.+.+.+.
T Consensus 290 --------------~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 290 --------------AENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp --------------HHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred --------------HHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence 2345566666652 278999999999999999999999876543
No 142
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.53 E-value=6.2e-15 Score=108.01 Aligned_cols=105 Identities=18% Similarity=0.120 Sum_probs=80.6
Q ss_pred CCCCCcccccc------cccccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970 1 MNVIGQEDYNR------LRPLSY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 72 (150)
Q Consensus 1 wDt~G~e~~~~------l~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~ 72 (150)
|||||+..+.. +.+.|+ .++|++++|+|+++.... ..|...+... ...|+++|+||+|+......
T Consensus 55 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~----~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~-- 127 (271)
T 3k53_A 55 VDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMRN----LFLTLELFEM-EVKNIILVLNKFDLLKKKGA-- 127 (271)
T ss_dssp EECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH----HHHHHHHHHT-TCCSEEEEEECHHHHHHHTC--
T ss_pred EeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchhh----HHHHHHHHhc-CCCCEEEEEEChhcCccccc--
Confidence 89999999877 556666 689999999999986432 2333344433 23899999999998764431
Q ss_pred CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
. .....+++.+++ +++++||+++.|+.++|+.+.+.+...
T Consensus 128 --------~-~~~~~l~~~lg~-~~~~~Sa~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 128 --------K-IDIKKMRKELGV-PVIPTNAKKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp --------C-CCHHHHHHHHSS-CEEECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred --------H-HHHHHHHHHcCC-cEEEEEeCCCCCHHHHHHHHHHHHhcc
Confidence 1 126677788887 999999999999999999999987644
No 143
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.53 E-value=3.4e-14 Score=112.97 Aligned_cols=63 Identities=11% Similarity=0.148 Sum_probs=52.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 67 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 67 (150)
|||||+++|......+++.+|++|+|+|+++..+.+.. ..| ..+... ++|+++|+||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~-~~~~~~--~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 87 LDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLM-EVCRLR--HTPIMTFINKMDRDTR 149 (528)
T ss_dssp ECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHH-HHHHTT--TCCEEEEEECTTSCCS
T ss_pred EECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHHc--CCCEEEEEeCCCCccc
Confidence 89999999999999999999999999999998877775 444 334332 7899999999998643
No 144
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.53 E-value=1e-14 Score=113.57 Aligned_cols=103 Identities=18% Similarity=0.186 Sum_probs=74.5
Q ss_pred CCCCCcccc---------cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccc
Q 031970 1 MNVIGQEDY---------NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL 71 (150)
Q Consensus 1 wDt~G~e~~---------~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~ 71 (150)
|||||++.. ......++++||++|+|+|+++..+..+. .+...+.+. ++|+++|+||+|+...
T Consensus 54 ~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~--~i~~~l~~~--~~p~ilv~NK~D~~~~---- 125 (439)
T 1mky_A 54 VDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDE--SLADFLRKS--TVDTILVANKAENLRE---- 125 (439)
T ss_dssp EECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHH--HHHHHHHHH--TCCEEEEEESCCSHHH----
T ss_pred EECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEeCCCCccc----
Confidence 899998753 34456689999999999999987665541 222223322 6899999999997532
Q ss_pred cCCCCCCccCHHHH-HHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 72 ADHPGLVPVTTAQG-EELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 72 ~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
..... ..+. ..++.+++++||++|.|++++++.+.+.+.+
T Consensus 126 ---------~~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 126 ---------FEREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp ---------HHHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ---------cHHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhccc
Confidence 01222 3333 4565478999999999999999999998864
No 145
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.53 E-value=2.6e-14 Score=110.36 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=74.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS----RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPG 76 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~----~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~ 76 (150)
||||||++|.......+..+|++|+|+|+++ +.+++.+ ..| .. ....|+++|+||+|+.+....
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~----~~-l~~~~iivv~NK~Dl~~~~~~------ 153 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-MAL----EI-LGIDKIIIVQNKIDLVDEKQA------ 153 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-HHH----HH-TTCCCEEEEEECTTSSCTTTT------
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-HHH----HH-cCCCeEEEEEEccCCCCHHHH------
Confidence 8999999998877778888999999999995 5566654 322 21 123589999999999764321
Q ss_pred CCccCHHHHHHHHHHc--CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 77 LVPVTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 77 ~~~v~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
....+++..+++.+ ...+++++||+++.|++++++.|.+.+..+
T Consensus 154 --~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 154 --EENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp --TTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred --HHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 11345566666543 123899999999999999999999887654
No 146
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.53 E-value=1.4e-13 Score=110.77 Aligned_cols=114 Identities=16% Similarity=0.154 Sum_probs=77.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccc-c----
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL-A---- 72 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~-~---- 72 (150)
|||||+++|..++..+++.+|++|+|+|+++ +.+++.+ . + +.. .++|+++++||+|+....... .
T Consensus 75 iDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-~-~---l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~ 147 (594)
T 1g7s_A 75 IDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEAL-N-I---LRM--YRTPFVVAANKIDRIHGWRVHEGRPFM 147 (594)
T ss_dssp ECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-H-H---HHH--TTCCEEEEEECGGGSTTCCCCTTCCHH
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-H-H---HHH--cCCeEEEEecccccccccccccCCchH
Confidence 8999999999999999999999999999999 7777654 2 2 222 368999999999986421100 0
Q ss_pred --CCCCCCccCH---H---HHHHHHHHcC--------------CcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 73 --DHPGLVPVTT---A---QGEELRKQIG--------------ASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 73 --~~~~~~~v~~---~---~~~~~~~~~~--------------~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
.......+.. + +........+ ..+++++||++|.|+.++++.+...+..
T Consensus 148 e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 148 ETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 0000000000 0 1111112222 2379999999999999999999987753
No 147
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.52 E-value=4.8e-15 Score=117.82 Aligned_cols=108 Identities=18% Similarity=0.208 Sum_probs=79.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||++.|..++..+++.+|++|+|+|+++....+.. +.| ..+.. .++|+++|+||+|+.+.... .
T Consensus 57 iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~-e~l-~~~~~--~~vPiIVViNKiDl~~~~~~---------~ 123 (537)
T 3izy_P 57 LDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTV-ESI-QHAKD--AHVPIVLAINKCDKAEADPE---------K 123 (537)
T ss_dssp EECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHH-HHH-HHHHT--TTCCEEECCBSGGGTTTSCC---------S
T ss_pred EECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHH-HHH-HHHHH--cCCcEEEEEecccccccchH---------H
Confidence 89999999999999999999999999999997666654 333 33332 36899999999998754321 0
Q ss_pred CHHHHHHH---HHHcC-CcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 81 TTAQGEEL---RKQIG-ASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 81 ~~~~~~~~---~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
...+...+ +..++ ..+++++||++|.|++++++.+...+..
T Consensus 124 v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~ 168 (537)
T 3izy_P 124 VKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEM 168 (537)
T ss_dssp SSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhhc
Confidence 11122111 11221 2389999999999999999999988753
No 148
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.51 E-value=3.3e-14 Score=111.97 Aligned_cols=105 Identities=19% Similarity=0.156 Sum_probs=80.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL 77 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~ 77 (150)
|||||+++|......++..+|++|+|+|+++ +.+.+.+ .+ +.. .++|+++|+||+|+.+....
T Consensus 78 iDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l--~~---~~~--~~ip~IvviNK~Dl~~~~~~------- 143 (482)
T 1wb1_A 78 VDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM--LI---LDH--FNIPIIVVITKSDNAGTEEI------- 143 (482)
T ss_dssp CCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH--HH---HHH--TTCCBCEEEECTTSSCHHHH-------
T ss_pred EECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHH--HH---HHH--cCCCEEEEEECCCcccchhH-------
Confidence 8999999999888889999999999999998 5566554 12 222 26899999999999753211
Q ss_pred CccCHHHHHHHHHHc-C--CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970 78 VPVTTAQGEELRKQI-G--ASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 78 ~~v~~~~~~~~~~~~-~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
....+++..+++.. + ..+++++||++|.|++++++.|.+.+.
T Consensus 144 -~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 144 -KRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp -HHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 01334555666555 2 138999999999999999999999875
No 149
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.49 E-value=6.6e-15 Score=114.60 Aligned_cols=103 Identities=17% Similarity=0.143 Sum_probs=72.2
Q ss_pred CCCCCcc--------cccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970 1 MNVIGQE--------DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 72 (150)
Q Consensus 1 wDt~G~e--------~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~ 72 (150)
|||||++ ++...+..++++||++|+|+|++++.++.+ ..+...+.+ .++|+++|+||+|+......
T Consensus 56 ~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~--~~~pvilv~NK~D~~~~~~~-- 129 (436)
T 2hjg_A 56 IDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMRAN-- 129 (436)
T ss_dssp EC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT--CCSCEEEEEECCCC-----C--
T ss_pred EECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCccchhh--
Confidence 8999996 667777889999999999999999877765 344544543 47899999999998653211
Q ss_pred CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
...+. ..++.+++++||++|.|+.++++.+.+.+.+.
T Consensus 130 ------------~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~ 166 (436)
T 2hjg_A 130 ------------IYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKNI 166 (436)
T ss_dssp ------------CCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGGGC
T ss_pred ------------HHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcCcc
Confidence 01111 24544789999999999999999999988643
No 150
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.48 E-value=4.9e-14 Score=110.94 Aligned_cols=100 Identities=13% Similarity=0.158 Sum_probs=76.1
Q ss_pred CCCCCcc-cccccc--------cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccc
Q 031970 1 MNVIGQE-DYNRLR--------PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL 71 (150)
Q Consensus 1 wDt~G~e-~~~~l~--------~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~ 71 (150)
|||||++ ++.... ..+++.||++|+|+|++++.++++. .+++.+ .+.|+++|+||+|+...
T Consensus 296 ~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~--~il~~l----~~~piivV~NK~DL~~~---- 365 (482)
T 1xzp_A 296 VDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDR--KILERI----KNKRYLVVINKVDVVEK---- 365 (482)
T ss_dssp EESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHH--HHHHHH----TTSSEEEEEEECSSCCC----
T ss_pred EECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHH--HHHHHh----cCCCEEEEEECcccccc----
Confidence 8999998 765422 3578899999999999999888764 344443 37899999999998643
Q ss_pred cCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970 72 ADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 72 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
+..+++..++. .+. +++++||+++.|++++++.|.+.+.
T Consensus 366 --------~~~~~~~~~~~-~~~-~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 366 --------INEEEIKNKLG-TDR-HMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp --------CCHHHHHHHHT-CST-TEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred --------cCHHHHHHHhc-CCC-cEEEEECCCCCCHHHHHHHHHHHHh
Confidence 13344444432 333 7999999999999999999998765
No 151
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.48 E-value=1.4e-14 Score=111.82 Aligned_cols=111 Identities=19% Similarity=0.219 Sum_probs=83.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|......+++.+|++|+|+|+++....+. .+|+..+... ++| +++|+||+|+...... ..
T Consensus 80 iDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt--~~~l~~~~~~--~ip~iivviNK~Dl~~~~~~-------~~ 148 (405)
T 2c78_A 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFMNKVDMVDDPEL-------LD 148 (405)
T ss_dssp EECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHH--HHHHHHHHHT--TCCCEEEEEECGGGCCCHHH-------HH
T ss_pred EECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEECccccCcHHH-------HH
Confidence 8999999999888889999999999999998765544 3555555543 688 8999999999742210 00
Q ss_pred cCHHHHHHHHHHcCC----cEEEEeccCCCCC------------------HHHHHHHHHHHHhCC
Q 031970 80 VTTAQGEELRKQIGA----SYYIECSSKTQQN------------------VKAVFDAAIKVVIKP 122 (150)
Q Consensus 80 v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~------------------i~~~~~~l~~~~~~~ 122 (150)
....++..+++.+++ .+++++||+++.| +.++++.+.+.+..+
T Consensus 149 ~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p 213 (405)
T 2c78_A 149 LVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTP 213 (405)
T ss_dssp HHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCC
Confidence 123456677777763 4899999999987 778888888777644
No 152
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.47 E-value=6e-14 Score=108.41 Aligned_cols=108 Identities=14% Similarity=0.107 Sum_probs=78.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS----RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPG 76 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~----~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~ 76 (150)
|||||+++|.......+..+|++|+|+|+++ +.+.+.+ ..| ..+ ...|+++|+||+|+.+....
T Consensus 88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~-~~~----~~~~iivviNK~Dl~~~~~~------ 155 (410)
T 1kk1_A 88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MAL-QII----GQKNIIIAQNKIELVDKEKA------ 155 (410)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-HHH-HHH----TCCCEEEEEECGGGSCHHHH------
T ss_pred EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-HHH-HHc----CCCcEEEEEECccCCCHHHH------
Confidence 8999999998877777888999999999995 4566554 222 222 23589999999999764310
Q ss_pred CCccCHHHHHHHHHH---cCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970 77 LVPVTTAQGEELRKQ---IGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 77 ~~~v~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
....+++..+++. .+. +++++||+++.|++++++.|.+.+..+.
T Consensus 156 --~~~~~~i~~~l~~~~~~~~-~~i~vSA~~g~gi~~L~~~l~~~~~~p~ 202 (410)
T 1kk1_A 156 --LENYRQIKEFIEGTVAENA-PIIPISALHGANIDVLVKAIEDFIPTPK 202 (410)
T ss_dssp --HHHHHHHHHHHTTSTTTTC-CEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred --HHHHHHHHHHHHhcCcCCC-eEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence 0123344555543 233 8999999999999999999998876543
No 153
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.46 E-value=3.8e-14 Score=109.16 Aligned_cols=111 Identities=20% Similarity=0.173 Sum_probs=81.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|......+++.+|++|+|+|+++....+.. +.| ..+... ++| +++++||+|+...... ..
T Consensus 71 iDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l-~~~~~~--~vp~iivviNK~Dl~~~~~~-------~~ 139 (397)
T 1d2e_A 71 TDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTR-EHL-LLARQI--GVEHVVVYVNKADAVQDSEM-------VE 139 (397)
T ss_dssp EECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHH-HHH-HHHHHT--TCCCEEEEEECGGGCSCHHH-------HH
T ss_pred EECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHH-HHH-HHHHHc--CCCeEEEEEECcccCCCHHH-------HH
Confidence 89999999998888899999999999999986544432 333 333332 688 7899999999752210 00
Q ss_pred cCHHHHHHHHHHcCC----cEEEEeccCCCCC----------HHHHHHHHHHHHhCC
Q 031970 80 VTTAQGEELRKQIGA----SYYIECSSKTQQN----------VKAVFDAAIKVVIKP 122 (150)
Q Consensus 80 v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~----------i~~~~~~l~~~~~~~ 122 (150)
....++..+++.+++ .+++++||+++.| +.++++.+.+.+..+
T Consensus 140 ~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p 196 (397)
T 1d2e_A 140 LVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP 196 (397)
T ss_dssp HHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCC
Confidence 133566677777764 3899999999764 889999998887654
No 154
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.45 E-value=3.2e-13 Score=100.50 Aligned_cols=106 Identities=16% Similarity=0.145 Sum_probs=78.9
Q ss_pred CCCCCcc---------cccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccc
Q 031970 1 MNVIGQE---------DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL 71 (150)
Q Consensus 1 wDt~G~e---------~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~ 71 (150)
|||||++ .+......+++.+|++++|+|.++ -+..+ ..+.+.+.. .+.|+++|+||+|+.....
T Consensus 61 iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~--~~i~~~l~~--~~~P~ilvlNK~D~~~~~~-- 133 (301)
T 1ega_A 61 VDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDD--EMVLNKLRE--GKAPVILAVNKVDNVQEKA-- 133 (301)
T ss_dssp ESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHH--HHHHHHHHS--SSSCEEEEEESTTTCCCHH--
T ss_pred EECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHH--HHHHHHHHh--cCCCEEEEEECcccCccHH--
Confidence 7999998 455666788999999999999987 33322 233333432 3689999999999875221
Q ss_pred cCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 72 ADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 72 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
.....+..+.+.++...++++||+++.|++++++.+...+.+
T Consensus 134 --------~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 134 --------DLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp --------HHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred --------HHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 133555666666776579999999999999999999987654
No 155
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.44 E-value=1.1e-13 Score=107.77 Aligned_cols=107 Identities=15% Similarity=0.157 Sum_probs=74.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHH------HHHHHHHhhhCCCCCEEEEeeCCCcccccccccCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVL------KKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH 74 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~------~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~ 74 (150)
|||||+++|......+++.+|++|+|+|+++ .+|+... .+....+... .-.|+++++||+|+.+....
T Consensus 89 iDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~---- 162 (435)
T 1jny_A 89 IDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM-GLDQLIVAVNKMDLTEPPYD---- 162 (435)
T ss_dssp CCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT-TCTTCEEEEECGGGSSSTTC----
T ss_pred EECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc-CCCeEEEEEEcccCCCcccc----
Confidence 8999999999988889999999999999999 6666430 1222222221 22469999999999762100
Q ss_pred CCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHHHHH
Q 031970 75 PGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAVFD 113 (150)
Q Consensus 75 ~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~~ 113 (150)
.+......+++..+++.+++ .+++++||++|.|+.+++.
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 00001134667777777763 3799999999999986543
No 156
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.43 E-value=2.9e-13 Score=106.08 Aligned_cols=101 Identities=16% Similarity=0.202 Sum_probs=68.4
Q ss_pred CCCCCccccccccc--------ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970 1 MNVIGQEDYNRLRP--------LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 72 (150)
Q Consensus 1 wDt~G~e~~~~l~~--------~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~ 72 (150)
|||||+.++....+ .+++.+|++++|+|++++.+... ..|+..+. +.|+++|+||+|+......
T Consensus 277 iDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~--~~i~~~l~----~~piivV~NK~Dl~~~~~~-- 348 (462)
T 3geh_A 277 LDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD--QEIYEQVK----HRPLILVMNKIDLVEKQLI-- 348 (462)
T ss_dssp CC--------------------CCCCSCSEEEEEEETTTCSCHHH--HHHHHHHT----TSCEEEEEECTTSSCGGGS--
T ss_pred EECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH--HHHHHhcc----CCcEEEEEECCCCCcchhh--
Confidence 89999877654433 37889999999999999887766 46666664 3799999999999765432
Q ss_pred CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
. ....+. .+ .+++++||+++.|++++++.+.+.+...
T Consensus 349 --------~--~~~~~~--~~-~~~i~iSAktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 349 --------T--SLEYPE--NI-TQIVHTAAAQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp --------T--TCCCCT--TC-CCEEEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred --------H--HHHHhc--cC-CcEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 1 000111 23 3899999999999999999999988654
No 157
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.41 E-value=2.9e-13 Score=106.62 Aligned_cols=103 Identities=14% Similarity=0.074 Sum_probs=66.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHH-----HHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYEN-----VLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP 75 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~-----~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~ 75 (150)
|||||+++|......+++.+|++|+|+|+++..++.. ...+.+. +.......|+|+|+||+|+.+....
T Consensus 116 iDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~-~~~~~~~~~iIvviNK~Dl~~~~~~----- 189 (483)
T 3p26_A 116 VDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHML-LASSLGIHNLIIAMNKMDNVDWSQQ----- 189 (483)
T ss_dssp ECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHH-HHHHTTCCCEEEEEECGGGGTTCHH-----
T ss_pred EECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHH-HHHHcCCCcEEEEEECcCcccchHH-----
Confidence 8999999999999999999999999999999754321 1012222 2222233579999999999763211
Q ss_pred CCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHH
Q 031970 76 GLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKA 110 (150)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~ 110 (150)
.......++..+...++. .+++++||++|.|+.+
T Consensus 190 -~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 190 -RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp -HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred -HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 000012344444444442 4899999999999875
No 158
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.41 E-value=1.3e-13 Score=107.35 Aligned_cols=102 Identities=14% Similarity=0.101 Sum_probs=73.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||+++|...+..+++.+|++|+|+|+++....+. .+++..+... ...|+++|+||+|+.+.... ....
T Consensus 109 iDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt--~~~l~~~~~~-~~~~iIvviNK~Dl~~~~~~------~~~~ 179 (434)
T 1zun_B 109 ADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT--RRHSYIASLL-GIKHIVVAINKMDLNGFDER------VFES 179 (434)
T ss_dssp EECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH--HHHHHHHHHT-TCCEEEEEEECTTTTTSCHH------HHHH
T ss_pred EECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc-CCCeEEEEEEcCcCCcccHH------HHHH
Confidence 8999999999888889999999999999998654443 2344333332 22369999999999752110 0001
Q ss_pred CHHHHHHHHHHcC--C--cEEEEeccCCCCCHHHH
Q 031970 81 TTAQGEELRKQIG--A--SYYIECSSKTQQNVKAV 111 (150)
Q Consensus 81 ~~~~~~~~~~~~~--~--~~~~~~Sa~~~~~i~~~ 111 (150)
...++..+++.++ . .+++++||++|.|+.++
T Consensus 180 i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 180 IKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 2355667777776 1 37999999999999884
No 159
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.41 E-value=2.1e-13 Score=104.23 Aligned_cols=107 Identities=11% Similarity=-0.013 Sum_probs=77.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCE-EEEee-CCCcccccccccCCCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGT-KLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilv~n-K~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|......+++.+|++|+|+| ++.. .... .+++..+... ++|. ++++| |+|+ +....
T Consensus 65 iDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~-~~qt-~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~-------- 130 (370)
T 2elf_A 65 VDAHSYPKTLKSLITALNISDIAVLCIP-PQGL-DAHT-GECIIALDLL--GFKHGIIALTRSDST-HMHAI-------- 130 (370)
T ss_dssp EECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCC-CHHH-HHHHHHHHHT--TCCEEEEEECCGGGS-CHHHH--------
T ss_pred EECCChHHHHHHHHHHHHHCCEEEEEEc-CCCC-cHHH-HHHHHHHHHc--CCCeEEEEEEeccCC-CHHHH--------
Confidence 8999999998877788999999999999 5433 3333 4555555443 5787 89999 9998 43210
Q ss_pred ccCHHHHHHHHHHcC--CcEEEE--eccCC---CCCHHHHHHHHHHHHhC
Q 031970 79 PVTTAQGEELRKQIG--ASYYIE--CSSKT---QQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~--~~~~~~--~Sa~~---~~~i~~~~~~l~~~~~~ 121 (150)
....+++..+++.++ ..++++ +||++ +.|++++++.|.+.+..
T Consensus 131 ~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 131 DELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp HHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 001244555555443 248999 99999 99999999999988754
No 160
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.41 E-value=2.9e-13 Score=105.46 Aligned_cols=106 Identities=18% Similarity=0.177 Sum_probs=71.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhh---HH---HHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRAS---YE---NVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLAD 73 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s---~~---~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~ 73 (150)
||||||++|......+++.||++|+|+|+++... |+ .. .+.+..+.. .++| +|+|+||+|+......
T Consensus 100 iDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt-~e~l~~~~~--~~v~~iIvviNK~Dl~~~~~~--- 173 (439)
T 3j2k_7 100 LDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQT-REHAMLAKT--AGVKHLIVLINKMDDPTVNWS--- 173 (439)
T ss_pred EECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchH-HHHHHHHHH--cCCCeEEEEeecCCCcccchH---
Confidence 8999999999999999999999999999998632 11 11 122222222 2567 9999999998642100
Q ss_pred CCCCCccCHHHHHHHHHHcCC-----cEEEEeccCCCCCHHHHHH
Q 031970 74 HPGLVPVTTAQGEELRKQIGA-----SYYIECSSKTQQNVKAVFD 113 (150)
Q Consensus 74 ~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 113 (150)
.........++..+++..++ .+++++||++|.|+.++.+
T Consensus 174 -~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 174 -NERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred -HHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 00000133455556666553 3799999999999999655
No 161
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.40 E-value=3.1e-14 Score=112.33 Aligned_cols=104 Identities=19% Similarity=0.336 Sum_probs=72.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc-ccCCCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY-LADHPG 76 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~-~~~~~~ 76 (150)
||||||+.|..++..+++.+|++|+|+|+++ +.+.+.+ ..+.. .++|+++++||+|+.+.... ....-.
T Consensus 56 iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l-----~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~ 128 (501)
T 1zo1_I 56 LDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI-----QHAKA--AQVPVVVAVNKIDKPEADPDRVKNELS 128 (501)
T ss_dssp ECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHH-----HHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCC
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHH-----HHHHh--cCceEEEEEEeccccccCHHHHHHHHH
Confidence 8999999999999999999999999999998 4455443 12222 36899999999999753211 000000
Q ss_pred CCccCHHHHHHHHHHcC-CcEEEEeccCCCCCHHHHHHHHHHH
Q 031970 77 LVPVTTAQGEELRKQIG-ASYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 77 ~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
.... +...++ ..+++++||++|.|++++|+.+...
T Consensus 129 ~~~~-------~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 129 QYGI-------LPEEWGGESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp CCCC-------CTTCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred Hhhh-------hHHHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence 0000 111222 1389999999999999999998754
No 162
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.40 E-value=6.5e-14 Score=109.92 Aligned_cols=106 Identities=20% Similarity=0.174 Sum_probs=60.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChh---hHHHH--HHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccCC
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRA---SYENV--LKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADH 74 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~---s~~~~--~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~ 74 (150)
||||||++|......+++.+|++|+|+|+++.. +|+.. ..+.+..... .++| +|+++||+|+......
T Consensus 126 iDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~~~~~~---- 199 (467)
T 1r5b_A 126 LDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKMDEPSVQWS---- 199 (467)
T ss_dssp CCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECTTSTTCSSC----
T ss_pred EECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEEEEEECccCCCcccc----
Confidence 899999999999999999999999999999863 22211 0111111222 3677 9999999999642100
Q ss_pred CCCCccCHHHHHHHHHHc-CC-----cEEEEeccCCCCCHHHHH
Q 031970 75 PGLVPVTTAQGEELRKQI-GA-----SYYIECSSKTQQNVKAVF 112 (150)
Q Consensus 75 ~~~~~v~~~~~~~~~~~~-~~-----~~~~~~Sa~~~~~i~~~~ 112 (150)
.+.......++..+++.. ++ .+++++||++|.|+.+++
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 000001334566666665 43 379999999999998765
No 163
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.39 E-value=2.8e-13 Score=114.92 Aligned_cols=111 Identities=15% Similarity=0.180 Sum_probs=82.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccCCCCCCc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
||||||++|......+++.+|++|+|+|+++....+. .+++..+... ++| +|+|+||+|+.+.... ..
T Consensus 364 IDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QT--rEhL~ll~~l--gIP~IIVVINKiDLv~d~e~-------le 432 (1289)
T 3avx_A 364 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT--REHILLGRQV--GVPYIIVFLNKCDMVDDEEL-------LE 432 (1289)
T ss_dssp EECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTH--HHHHHHHHHH--TCSCEEEEEECCTTCCCHHH-------HH
T ss_pred EECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHH--HHHHHHHHHc--CCCeEEEEEeecccccchhh-------HH
Confidence 8999999999888889999999999999998654443 2444444443 688 7899999999753210 00
Q ss_pred cCHHHHHHHHHHcCC----cEEEEeccCCC--------CCHHHHHHHHHHHHhCC
Q 031970 80 VTTAQGEELRKQIGA----SYYIECSSKTQ--------QNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 80 v~~~~~~~~~~~~~~----~~~~~~Sa~~~--------~~i~~~~~~l~~~~~~~ 122 (150)
....++..+++.+++ .+++++||++| .|+.++++.+.+.+..+
T Consensus 433 ~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P 487 (1289)
T 3avx_A 433 LVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEP 487 (1289)
T ss_dssp HHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCC
Confidence 133566677777763 48999999999 56899999988877644
No 164
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.38 E-value=2.2e-12 Score=100.48 Aligned_cols=106 Identities=20% Similarity=0.176 Sum_probs=71.5
Q ss_pred CCCCCcccccccc------------cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccc
Q 031970 1 MNVIGQEDYNRLR------------PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 68 (150)
Q Consensus 1 wDt~G~e~~~~l~------------~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~ 68 (150)
|||||+.++..+. ..+++.+|++++|+|+++..+.++. .+...+.. .+.|+++|+||+|+....
T Consensus 233 ~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~--~~~~~ilv~NK~Dl~~~~ 308 (439)
T 1mky_A 233 VDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER--RGRASVVVFNKWDLVVHR 308 (439)
T ss_dssp SSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSTTG
T ss_pred EECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCCCch
Confidence 8999986554332 2367789999999999987777653 34444443 378999999999987643
Q ss_pred ccccCCCCCCccCHHHHH-HHHHH---cCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970 69 HYLADHPGLVPVTTAQGE-ELRKQ---IGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 69 ~~~~~~~~~~~v~~~~~~-~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
.. ...+.. .+.+. .+..+++++||++|.|++++|+.+.+.+.
T Consensus 309 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~ 354 (439)
T 1mky_A 309 EK----------RYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYA 354 (439)
T ss_dssp GG----------CHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred hh----------HHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 21 233222 22222 23348999999999999999999987664
No 165
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.38 E-value=3.4e-13 Score=95.03 Aligned_cols=106 Identities=7% Similarity=-0.072 Sum_probs=68.5
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHH---HHHHhhhC--CCCCEEEEeeCC-CcccccccccCCC
Q 031970 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW---IPELQHYS--PGVPVVLVGTKL-DLREDKHYLADHP 75 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~---~~~i~~~~--~~~piilv~nK~-D~~~~~~~~~~~~ 75 (150)
|..||++++.+|+.||.++|++|+|+|.+|....+ ...++ ...+.... .++|++|.+||. |+...
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A-------- 178 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR-------- 178 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--------
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--------
Confidence 34599999999999999999999999999985443 21333 33333322 479999999995 66543
Q ss_pred CCCccCHHHHHHHHH----HcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 76 GLVPVTTAQGEELRK----QIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 76 ~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
++..++..... ...+ .+..|||.+|+|+.+-+++|++.+..
T Consensus 179 ----ms~~EI~e~L~L~~l~R~W-~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 179 ----MPCFYLAHELHLNLLNHPW-LVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp ----CCHHHHHHHTTGGGGCSCE-EEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred ----CCHHHHHHHcCCcCCCCCE-EEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 23344332221 1234 68899999999999999999877643
No 166
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.35 E-value=2.1e-12 Score=98.45 Aligned_cols=113 Identities=15% Similarity=0.198 Sum_probs=78.5
Q ss_pred CCCCCc---------ccccccccccccCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCccccc
Q 031970 1 MNVIGQ---------EDYNRLRPLSYRGADVFVLAFSLVSRA--SYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDK 68 (150)
Q Consensus 1 wDt~G~---------e~~~~l~~~~~~~ad~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~ 68 (150)
|||+|. +.|....+ .+..||++++|+|++++. ..+.. ..|...+.... .+.|+++|+||+|+.+..
T Consensus 231 ~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~ 308 (364)
T 2qtf_A 231 VDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGD 308 (364)
T ss_dssp EECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSC
T ss_pred EeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCch
Confidence 799997 33433333 578999999999999877 55554 56666555543 578999999999987532
Q ss_pred ccccCCCCCCccCHHHHHHHHHHc-C-CcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031970 69 HYLADHPGLVPVTTAQGEELRKQI-G-ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 124 (150)
Q Consensus 69 ~~~~~~~~~~~v~~~~~~~~~~~~-~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 124 (150)
.. .....+..+++.+ . ..+++++||+++.|++++++.+.+.+..+..
T Consensus 309 ~~---------~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 309 LY---------KKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp HH---------HHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred HH---------HHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccCC
Confidence 10 0112333444554 2 1368999999999999999999988765443
No 167
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.35 E-value=8.7e-13 Score=91.14 Aligned_cols=67 Identities=6% Similarity=0.150 Sum_probs=56.6
Q ss_pred CCCCCcccccccccccccC----CcEEEEEEeCC-ChhhHHHHHHHHHHHHhhh-----CCCCCEEEEeeCCCccccc
Q 031970 1 MNVIGQEDYNRLRPLSYRG----ADVFVLAFSLV-SRASYENVLKKWIPELQHY-----SPGVPVVLVGTKLDLREDK 68 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~----ad~~i~v~d~~-~~~s~~~~~~~~~~~i~~~-----~~~~piilv~nK~D~~~~~ 68 (150)
|||||++.|...+..+++. +|++|+|||++ ++.++..+ ..|+..+... .++.|+++|+||+|+....
T Consensus 96 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 96 VDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp EEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred EECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHH-HHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 8999999999888888876 89999999999 89999887 6776666542 2479999999999997654
No 168
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.31 E-value=2.2e-12 Score=100.98 Aligned_cols=101 Identities=13% Similarity=0.112 Sum_probs=70.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChh---hH----HHHHHHHHHHHhhhCCCCC-EEEEeeCCCccccccccc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRA---SY----ENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLA 72 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~---s~----~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~ 72 (150)
||||||++|......+++.+|++|+|+|+++.. +| +. .+++..+.. .++| +|+|+||+|+.+....
T Consensus 90 iDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt--~~~~~~~~~--~~v~~iivviNK~Dl~~~~~~-- 163 (458)
T 1f60_A 90 IDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQT--REHALLAFT--LGVRQLIVAVNKMDSVKWDES-- 163 (458)
T ss_dssp EECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHH--HHHHHHHHH--TTCCEEEEEEECGGGGTTCHH--
T ss_pred EECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhH--HHHHHHHHH--cCCCeEEEEEEccccccCCHH--
Confidence 899999999998888999999999999999863 22 22 222222332 2566 9999999999742110
Q ss_pred CCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHHH
Q 031970 73 DHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAV 111 (150)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~ 111 (150)
.......++..+++.+++ .+++++||++|.|+.++
T Consensus 164 ----~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 164 ----RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp ----HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred ----HHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 000133456667777764 48999999999998743
No 169
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.31 E-value=5.9e-13 Score=104.16 Aligned_cols=102 Identities=17% Similarity=0.152 Sum_probs=72.8
Q ss_pred CCCCC--------cccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970 1 MNVIG--------QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 72 (150)
Q Consensus 1 wDt~G--------~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~ 72 (150)
||||| ++++......++++||++|+|+|..+..+..+ .++...+.+ .++|+++|+||+|+.....
T Consensus 76 iDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d--~~l~~~l~~--~~~pvilV~NK~D~~~~~~--- 148 (456)
T 4dcu_A 76 IDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMRA--- 148 (456)
T ss_dssp ECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH--HHHHHHHTT--CCSCEEEEEECC----------
T ss_pred EECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH--HHHHHHHHH--cCCCEEEEEECccchhhhh---
Confidence 89999 88888888999999999999999988655554 244444444 4799999999999764321
Q ss_pred CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
....+. ..++..++++||++|.|+.++++.+.+.+..
T Consensus 149 -----------~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 149 -----------NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp -------------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTGGG
T ss_pred -----------hHHHHH-HcCCCceEEeecccccchHHHHHHHHhhccc
Confidence 111111 2333357899999999999999999887754
No 170
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.31 E-value=1.5e-12 Score=105.10 Aligned_cols=99 Identities=13% Similarity=0.093 Sum_probs=68.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChh----------hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRA----------SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY 70 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~----------s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~ 70 (150)
|||||+++|......+++.||++|+|+|+++.. +.+.+ ..+.. ....|+|+|+||+|+.+....
T Consensus 250 iDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l-----~~~~~-lgi~~iIVVvNKiDl~~~~~~ 323 (611)
T 3izq_1 250 VDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHM-----LLASS-LGIHNLIIAMNKMDNVDWSQQ 323 (611)
T ss_dssp EECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHH-----HHHHT-TTCCEEEEEEECTTTTTTCHH
T ss_pred EECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHH-----HHHHH-cCCCeEEEEEecccccchhHH
Confidence 899999999999999999999999999999742 22222 12222 122459999999998763211
Q ss_pred ccCCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHHH
Q 031970 71 LADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAV 111 (150)
Q Consensus 71 ~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~ 111 (150)
.......++..++...+. .+++++||++|.|+.++
T Consensus 324 ------~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 324 ------RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp ------HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred ------HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 000123444555555543 38999999999999876
No 171
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.30 E-value=3.4e-12 Score=104.00 Aligned_cols=61 Identities=21% Similarity=0.223 Sum_probs=50.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 65 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 65 (150)
|||||+++|......+++.+|++++|+|+++....+. ..++..+... ++|+++|+||+|+.
T Consensus 79 iDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt--~~~~~~~~~~--~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 79 LDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGT--ERAWTVAERL--GLPRMVVVTKLDKG 139 (665)
T ss_dssp EECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHHHT--TCCEEEEEECGGGC
T ss_pred EeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhH--HHHHHHHHHc--cCCEEEEecCCchh
Confidence 8999999999988999999999999999988766554 3444444443 79999999999986
No 172
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.30 E-value=3.3e-13 Score=99.54 Aligned_cols=105 Identities=16% Similarity=0.066 Sum_probs=72.8
Q ss_pred CCCCCcc-------------cccccccccccCCcEEE-EEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970 1 MNVIGQE-------------DYNRLRPLSYRGADVFV-LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 66 (150)
Q Consensus 1 wDt~G~e-------------~~~~l~~~~~~~ad~~i-~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 66 (150)
|||||+. .+..+...|++.++.+| +|+|+++..+..+. ..|+..+.. .+.|+++|+||+|+..
T Consensus 130 vDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~-~~~~~~~~~--~~~~~i~V~NK~Dl~~ 206 (299)
T 2aka_B 130 VDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LKIAKEVDP--QGQRTIGVITKLDLMD 206 (299)
T ss_dssp EECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-HHHHHHHCT--TCSSEEEEEECGGGSC
T ss_pred EeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH-HHHHHHhCC--CCCeEEEEEEccccCC
Confidence 8999964 45566777898988776 79999987665554 356665553 3689999999999976
Q ss_pred ccccccCCCCCCccCHHHHHHHHHH--cCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970 67 DKHYLADHPGLVPVTTAQGEELRKQ--IGASYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 67 ~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
.... ....+...... .++.+++++||+++.|++++++.+.+.
T Consensus 207 ~~~~----------~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 207 EGTD----------ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp TTCC----------CHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred CCch----------HHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 4321 22222110001 133478899999999999999998874
No 173
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.28 E-value=2.8e-12 Score=93.07 Aligned_cols=110 Identities=16% Similarity=0.156 Sum_probs=70.6
Q ss_pred CCCCCccccccccc-----------ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEee-CCCccccc
Q 031970 1 MNVIGQEDYNRLRP-----------LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT-KLDLREDK 68 (150)
Q Consensus 1 wDt~G~e~~~~l~~-----------~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~n-K~D~~~~~ 68 (150)
|||||+.++..... .+++++|++|+|+|+++........-.|+..+.......|+++|+| |+|+....
T Consensus 76 iDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~ 155 (260)
T 2xtp_A 76 IDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS 155 (260)
T ss_dssp EECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC
T ss_pred EECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc
Confidence 89999987643322 2678999999999998733322211233333321111357776666 99987432
Q ss_pred ccccCCCCCCccCH-------HHHHHHHHHcCCcE--E--EEeccCCCCCHHHHHHHHHHHHhC
Q 031970 69 HYLADHPGLVPVTT-------AQGEELRKQIGASY--Y--IECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 69 ~~~~~~~~~~~v~~-------~~~~~~~~~~~~~~--~--~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
. .. ..+..+.+..+... + +++||+++.|++++|..+.+.+..
T Consensus 156 ~-----------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 156 L-----------MDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp H-----------HHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-----------HHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 1 11 33445666655311 2 789999999999999999998865
No 174
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.26 E-value=3e-11 Score=96.12 Aligned_cols=63 Identities=14% Similarity=0.220 Sum_probs=49.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 67 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 67 (150)
|||||+++|......+++.+|++|+|+|+++....+. ..+...... .++|+++++||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t--~~~~~~~~~--~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 87 LDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT--RKLMEVTRL--RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp ECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH--HHHHHHHTT--TTCCEEEEEECTTSCCS
T ss_pred EECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH--HHHHHHHHH--cCCCEEEEEcCcCCccc
Confidence 8999999999888889999999999999998654433 233333333 37999999999998653
No 175
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.25 E-value=7.7e-12 Score=92.02 Aligned_cols=107 Identities=7% Similarity=-0.080 Sum_probs=73.5
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHH--HHHHHHHHhhh--CCCCCEEEEeeC-CCcccccccccCCCC
Q 031970 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHY--SPGVPVVLVGTK-LDLREDKHYLADHPG 76 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~--~~~~~~~i~~~--~~~~piilv~nK-~D~~~~~~~~~~~~~ 76 (150)
|.+||+.++.+|+.||.++|++|+|+|.+|.+.++.. +.++...+... ..++|++|.+|| -|+...-
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Am-------- 264 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRM-------- 264 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBC--------
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCC--------
Confidence 3578999999999999999999999999998754321 02222333322 257999999997 5775432
Q ss_pred CCccCHHHHHHHHH----HcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 77 LVPVTTAQGEELRK----QIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 77 ~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+..++.+... ...+ .+..|||.+|+|+.+-+++|++.+..
T Consensus 265 ----s~~EI~e~L~L~~l~r~W-~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 265 ----PCFYLAHELHLNLLNHPW-LVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp ----CHHHHHHHTTGGGGCSCE-EEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred ----CHHHHHHHcCCccCCCcE-EEEecccCCCcCHHHHHHHHHHHHHh
Confidence 3343332221 1234 68899999999999999999988753
No 176
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.25 E-value=1.2e-11 Score=94.33 Aligned_cols=98 Identities=20% Similarity=0.238 Sum_probs=75.7
Q ss_pred CcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHH
Q 031970 5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ 84 (150)
Q Consensus 5 G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~ 84 (150)
.+|+|.++.+.+++.++++++|+|++++. ..|...+.+...+.|+++|+||+|+..... ..+.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~-----------~~~~ 117 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKSV-----------KHDK 117 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTTS-----------CHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCccc-----------CHHH
Confidence 36788899999999999999999999853 356666666666899999999999975432 2233
Q ss_pred H----HHHHHHcCCc--EEEEeccCCCCCHHHHHHHHHHHH
Q 031970 85 G----EELRKQIGAS--YYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 85 ~----~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
. ..+++..+.. +++++||+++.|++++++.+.+..
T Consensus 118 ~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 118 VKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 3 3345666652 789999999999999999997754
No 177
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.24 E-value=1.8e-11 Score=100.20 Aligned_cols=63 Identities=17% Similarity=0.226 Sum_probs=53.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 67 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 67 (150)
|||||+++|...+..+++.+|++|+|+|+++..+.+.. ..|.. +.. .++|+++|+||+|+...
T Consensus 82 iDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~-~~~~~-~~~--~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 82 IDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWRQ-AEK--YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp ECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHH-HHH--TTCCEEEEEECTTSTTC
T ss_pred EECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhH-HHHHH-HHH--cCCCEEEEEECCCcccC
Confidence 89999999999999999999999999999998888775 55543 333 27999999999998753
No 178
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.23 E-value=3.8e-13 Score=102.41 Aligned_cols=107 Identities=7% Similarity=0.050 Sum_probs=59.1
Q ss_pred CCCCCc-------cccccccc-------ccccCCcEE-----------EEEEeCCC-hhhHHHHHHHHHHHHhhhCCCCC
Q 031970 1 MNVIGQ-------EDYNRLRP-------LSYRGADVF-----------VLAFSLVS-RASYENVLKKWIPELQHYSPGVP 54 (150)
Q Consensus 1 wDt~G~-------e~~~~l~~-------~~~~~ad~~-----------i~v~d~~~-~~s~~~~~~~~~~~i~~~~~~~p 54 (150)
|||||+ +.|..++. .|+++++++ +++|++++ ..++..+...|...+. .++|
T Consensus 100 ~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~---~~~p 176 (361)
T 2qag_A 100 VDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH---NKVN 176 (361)
T ss_dssp EC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC---S-SC
T ss_pred EEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc---cCCC
Confidence 899999 88888876 666655443 36666655 4445444124555443 5799
Q ss_pred EEEEeeCCCcccccccccCCCCCCccCH--HHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 55 VVLVGTKLDLREDKHYLADHPGLVPVTT--AQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 55 iilv~nK~D~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
+|+|+||+|+..... +.. ..+..++..+++ +++++||+++.+ ++.|..+.+.+...
T Consensus 177 iIlV~NK~Dl~~~~e----------v~~~k~~i~~~~~~~~i-~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 177 IVPVIAKADTLTLKE----------RERLKKRILDEIEEHNI-KIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp EEEEEECCSSSCHHH----------HHHHHHHHHHHTTCC-C-CSCCCC----------CHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHH----------HHHHHHHHHHHHHHCCC-CEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 999999999876432 122 466677777787 899999999998 88888888777543
No 179
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.22 E-value=3.8e-12 Score=102.47 Aligned_cols=106 Identities=19% Similarity=0.173 Sum_probs=66.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKH 69 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~----------~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~ 69 (150)
|||||+++|......+++.+|++|+|+|+++. .+.+.+ ..+... ++| +|+|+||+|+.....
T Consensus 260 iDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l-----~~~~~l--gip~iIvviNKiDl~~~~~ 332 (592)
T 3mca_A 260 GDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA-----YLLRAL--GISEIVVSVNKLDLMSWSE 332 (592)
T ss_dssp CEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH-----HHHHHS--SCCCEEEEEECGGGGTTCH
T ss_pred EECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH-----HHHHHc--CCCeEEEEEeccccccccH
Confidence 89999999999999999999999999999853 344432 122222 465 999999999875211
Q ss_pred cccCCCCCCccCHHHHHHHH-HHcCC----cEEEEeccCCCCCHH--------------HHHHHHHHHH
Q 031970 70 YLADHPGLVPVTTAQGEELR-KQIGA----SYYIECSSKTQQNVK--------------AVFDAAIKVV 119 (150)
Q Consensus 70 ~~~~~~~~~~v~~~~~~~~~-~~~~~----~~~~~~Sa~~~~~i~--------------~~~~~l~~~~ 119 (150)
. .......++..+. +..++ .+++++||++|.|+. .+++.|...+
T Consensus 333 ~------~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 333 D------RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp H------HHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred H------HHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 0 0001223444444 44454 279999999999998 6777766544
No 180
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.22 E-value=3.9e-11 Score=98.36 Aligned_cols=63 Identities=19% Similarity=0.226 Sum_probs=51.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 67 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 67 (150)
|||||+++|...+..+++.+|++|+|+|+++....+.. ..|. .+.. .++|+++|+||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~-~~~~--~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWR-QANK--YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHH-HHHH--cCCCEEEEEeCCCcccc
Confidence 89999999999999999999999999999988766654 4443 3332 37999999999998653
No 181
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.17 E-value=2.6e-11 Score=92.55 Aligned_cols=99 Identities=16% Similarity=0.232 Sum_probs=73.8
Q ss_pred CCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHH
Q 031970 4 IGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTA 83 (150)
Q Consensus 4 ~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~ 83 (150)
..||+|.++.+.++.+++++++|+|++++.+ .|.+.+.+...+.|+++|+||+|+..... ..+
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~~-----------~~~ 118 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRSV-----------KYP 118 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTTC-----------CHH
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCcc-----------CHH
Confidence 3588899999999999999999999999763 24444444455799999999999976432 223
Q ss_pred HHH----HHHHHcCC--cEEEEeccCCCCCHHHHHHHHHHHH
Q 031970 84 QGE----ELRKQIGA--SYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 84 ~~~----~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
... .+++..+. .+++.+||+++.|++++++.+.+..
T Consensus 119 ~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 119 KLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 333 33555665 3789999999999999999997765
No 182
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.16 E-value=9e-11 Score=96.07 Aligned_cols=63 Identities=22% Similarity=0.278 Sum_probs=52.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 67 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 67 (150)
|||||+.+|......+++.+|++|+|+|+++..+.+.. ..|. .+... +.|+++|+||+|+...
T Consensus 80 iDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~-~~~~~--~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 80 IDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWR-QATTY--GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp ECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHH-HHHHT--TCCEEEEEECTTSTTC
T ss_pred EECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHH-HHHHc--CCCEEEEEECCCcccc
Confidence 89999999999999999999999999999998877765 4554 34432 7899999999998653
No 183
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.15 E-value=3.9e-11 Score=86.01 Aligned_cols=113 Identities=16% Similarity=0.164 Sum_probs=72.1
Q ss_pred CCCCC-----------cccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCccc
Q 031970 1 MNVIG-----------QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLRE 66 (150)
Q Consensus 1 wDt~G-----------~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~~ 66 (150)
||||| ++.+......+++++|++|+|+|+++....+ ..|+..+.... ...|+++|+||+|+..
T Consensus 83 iDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~---~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~ 159 (239)
T 3lxx_A 83 VDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEE---HKATEKILKMFGERARSFMILIFTRKDDLG 159 (239)
T ss_dssp EECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHH---HHHHHHHHHHHHHHHGGGEEEEEECGGGC-
T ss_pred EECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHH---HHHHHHHHHHhhhhccceEEEEEeCCccCC
Confidence 89999 4455555566778999999999998644422 23333333211 2469999999999876
Q ss_pred ccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC-----CCHHHHHHHHHHHHhC
Q 031970 67 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ-----QNVKAVFDAAIKVVIK 121 (150)
Q Consensus 67 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~-----~~i~~~~~~l~~~~~~ 121 (150)
..... .......+.+..+.+..+. .++.+++..+ .++.++|..+...+.+
T Consensus 160 ~~~~~----~~i~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 160 DTNLH----DYLREAPEDIQDLMDIFGD-RYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp ---------------CHHHHHHHHHHSS-SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHH----HHHHhchHHHHHHHHHcCC-EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 43210 0000012467788888886 7777777644 6899999988887754
No 184
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.11 E-value=1.8e-10 Score=80.43 Aligned_cols=109 Identities=12% Similarity=0.044 Sum_probs=72.1
Q ss_pred CCCCCccc----------ccccccccc---cCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970 1 MNVIGQED----------YNRLRPLSY---RGADVFVLAFSLVSRASYENV-LKKWIPELQHYSPGVPVVLVGTKLDLRE 66 (150)
Q Consensus 1 wDt~G~e~----------~~~l~~~~~---~~ad~~i~v~d~~~~~s~~~~-~~~~~~~i~~~~~~~piilv~nK~D~~~ 66 (150)
|||||+.. |......++ ..++++++++|++++.++.+. ...|+ .. .+.|+++|+||+|+.+
T Consensus 77 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~--~~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 77 VDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD--SNIAVLVLLTKADKLA 151 (210)
T ss_dssp EECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH--TTCCEEEEEECGGGSC
T ss_pred EECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH--cCCCeEEEEecccCCC
Confidence 79999843 333333444 478999999999987665431 12333 22 3689999999999875
Q ss_pred ccccccCCCCCCccCHHHHHHHHHHcC-CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 67 DKHYLADHPGLVPVTTAQGEELRKQIG-ASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 67 ~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
.... ......+..++...+ ...++++||+++.|++++++.+.+.+.+.
T Consensus 152 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 152 SGAR--------KAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp HHHH--------HHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred chhH--------HHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence 4210 001244555555554 34788999999999999999998877543
No 185
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.10 E-value=1.1e-10 Score=95.54 Aligned_cols=118 Identities=11% Similarity=0.081 Sum_probs=77.2
Q ss_pred CCCCCcccc---cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCC
Q 031970 1 MNVIGQEDY---NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL 77 (150)
Q Consensus 1 wDt~G~e~~---~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~ 77 (150)
|||||.... ......|++.||++|+|+|++++.+..+. ..|...+... +.|+++|+||+|+...........+.
T Consensus 179 iDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~-~~l~~~l~~~--~~~iiiVlNK~Dl~~~~~~~~ee~e~ 255 (695)
T 2j69_A 179 VDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGER-RYLENYIKGR--GLTVFFLVNAWDQVRESLIDPDDVEE 255 (695)
T ss_dssp EECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHH-HHHHHHTTTS--CCCEEEEEECGGGGGGGCSSTTCHHH
T ss_pred EECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHH-HHHHHHHHhh--CCCEEEEEECcccccccccChhhHHH
Confidence 799997763 34556789999999999999998888776 6666555433 67999999999987543100000000
Q ss_pred CccCHHHHHH-----HHHHcC-------CcEEEEeccC--------------CCCCHHHHHHHHHHHHhC
Q 031970 78 VPVTTAQGEE-----LRKQIG-------ASYYIECSSK--------------TQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 78 ~~v~~~~~~~-----~~~~~~-------~~~~~~~Sa~--------------~~~~i~~~~~~l~~~~~~ 121 (150)
.......... +....+ ..+++++||+ ++.|+.+++..+.+.+..
T Consensus 256 l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 256 LQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp HHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 0000001111 111111 1368999999 999999999999887754
No 186
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.09 E-value=4.4e-10 Score=86.97 Aligned_cols=109 Identities=16% Similarity=0.158 Sum_probs=79.8
Q ss_pred CCCCCccc----cccccccc---ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCccccccc
Q 031970 1 MNVIGQED----YNRLRPLS---YRGADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHY 70 (150)
Q Consensus 1 wDt~G~e~----~~~l~~~~---~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~~~~~~ 70 (150)
|||+|..+ +..+...+ +..++.+++++|++ ...+.++ ..|..++.... .+.|.++|+||+|+... .
T Consensus 210 ~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~l-s~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~- 285 (416)
T 1udx_A 210 ADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLEE-E- 285 (416)
T ss_dssp EECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-
T ss_pred EeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHH-HHHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-
Confidence 79999743 33333333 34699999999998 5566665 66666666554 25899999999998754 1
Q ss_pred ccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031970 71 LADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 124 (150)
Q Consensus 71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 124 (150)
....+...++..+. +++.+||+++.|++++++.+.+.+...+.
T Consensus 286 ----------~~~~l~~~l~~~g~-~vi~iSA~~g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 286 ----------AVKALADALAREGL-AVLPVSALTGAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp ----------HHHHHHHHHHTTTS-CEEECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred ----------HHHHHHHHHHhcCC-eEEEEECCCccCHHHHHHHHHHHHHhccc
Confidence 33455555555665 89999999999999999999999976543
No 187
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.07 E-value=2.4e-11 Score=89.03 Aligned_cols=87 Identities=7% Similarity=0.001 Sum_probs=50.7
Q ss_pred CcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 031970 20 ADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 98 (150)
Q Consensus 20 ad~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 98 (150)
+|+++++++.+... .-.+ ..+.+.+.. ++|+|+|+||+|+...... ......+.......++ +++
T Consensus 116 ~~~~l~~i~~~~~~~~~~d--~~~l~~l~~---~~pvi~V~nK~D~~~~~e~--------~~~~~~i~~~l~~~~i-~v~ 181 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLD--IEFMKRLHE---KVNIIPLIAKADTLTPEEC--------QQFKKQIMKEIQEHKI-KIY 181 (274)
T ss_dssp CCEEEEEECSCCSSCCHHH--HHHHHHHTT---TSCEEEEESSGGGSCHHHH--------HHHHHHHHHHHHHTTC-CCC
T ss_pred eeEEEEEecCCCCCCCHHH--HHHHHHHhc---cCCEEEEEeccCCCCHHHH--------HHHHHHHHHHHHHcCC-eEE
Confidence 78999999877632 3333 345555554 7999999999998653221 0122344555666776 899
Q ss_pred EeccCCCCCHHHHHHHHHHHHh
Q 031970 99 ECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 99 ~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
++||+++.|+.+++..|...+.
T Consensus 182 ~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 182 EFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp CC-----------CHHHHHTCS
T ss_pred cCCCCCChhHHHHHHHHhcCCC
Confidence 9999999999999999988763
No 188
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.03 E-value=1.5e-11 Score=93.36 Aligned_cols=101 Identities=14% Similarity=0.114 Sum_probs=70.1
Q ss_pred CCCCCcccc-------------cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCccc
Q 031970 1 MNVIGQEDY-------------NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLRE 66 (150)
Q Consensus 1 wDt~G~e~~-------------~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~ 66 (150)
|||||+.++ ..+...|++++|++|+|+|..+..... ..|+..+.... .+.|+++|+||+|+..
T Consensus 141 vDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~---~~~~~l~~~~~~~~~~~i~V~nK~Dl~~ 217 (360)
T 3t34_A 141 IDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT---SDAIKISREVDPSGDRTFGVLTKIDLMD 217 (360)
T ss_dssp EECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG---CHHHHHHHHSCTTCTTEEEEEECGGGCC
T ss_pred EECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC---HHHHHHHHHhcccCCCEEEEEeCCccCC
Confidence 899999887 556678999999999999886544332 12333333333 3689999999999976
Q ss_pred ccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHH
Q 031970 67 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115 (150)
Q Consensus 67 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 115 (150)
.... ....+......++. +|+++|++++.++++.+...
T Consensus 218 ~~~~----------~~~~~~~~~~~~~~-~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 218 KGTD----------AVEILEGRSFKLKY-PWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp TTCC----------SHHHHTTSSSCCSS-CCEEECCCCHHHHHTTCCHH
T ss_pred Cccc----------HHHHHcCccccccC-CeEEEEECChHHhccCCCHH
Confidence 4331 33444444445565 89999999998887765543
No 189
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.03 E-value=4e-10 Score=81.39 Aligned_cols=110 Identities=14% Similarity=0.130 Sum_probs=71.3
Q ss_pred CCCCCc--------ccccccccccc----cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCCc
Q 031970 1 MNVIGQ--------EDYNRLRPLSY----RGADVFVLAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDL 64 (150)
Q Consensus 1 wDt~G~--------e~~~~l~~~~~----~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~D~ 64 (150)
|||||. +++......++ +++|++|+|+|+++....+ ..+++.+.+.. .+.|+++++||.|+
T Consensus 75 iDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~---~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 75 VDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQD---QQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp EECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHH---HHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred EECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHH---HHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 899997 44433333333 8999999999998632222 22333333321 26899999999998
Q ss_pred ccccccccCCCCCCcc---CHHHHHHHHHHcCCcEEEEeccCC-----CCCHHHHHHHHHHHHhC
Q 031970 65 REDKHYLADHPGLVPV---TTAQGEELRKQIGASYYIECSSKT-----QQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 65 ~~~~~~~~~~~~~~~v---~~~~~~~~~~~~~~~~~~~~Sa~~-----~~~i~~~~~~l~~~~~~ 121 (150)
...... ..+ ....+..+.+.++. .+..+++.. +.|+.++++.+.+.+.+
T Consensus 152 ~~~~~~-------~~l~~~~~~~l~~l~~~~g~-~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 152 AGGSLH-------DYVSNTENRALRELVAECGG-RVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp TTCCHH-------HHHHHCCCHHHHHHHHHTTT-CEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHH-------HHHhhcccHHHHHHHHHcCC-eEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 653210 000 11456777888886 666666555 58999999999988864
No 190
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.01 E-value=4.7e-11 Score=88.67 Aligned_cols=109 Identities=13% Similarity=0.161 Sum_probs=68.0
Q ss_pred CCCCCccc-------------ccccccccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970 1 MNVIGQED-------------YNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 66 (150)
Q Consensus 1 wDt~G~e~-------------~~~l~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 66 (150)
|||||..+ +..+...+++++|++++|+|.++.. +.... ..+...+.. .+.|+++|+||+|+..
T Consensus 136 vDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~-~~i~~~~~~--~~~~~i~v~NK~Dl~~ 212 (315)
T 1jwy_B 136 VDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDA-LQLAKEVDP--EGKRTIGVITKLDLMD 212 (315)
T ss_dssp EECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSH-HHHHHHHCS--SCSSEEEEEECTTSSC
T ss_pred EECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHH-HHHHHHhCC--CCCcEEEEEcCcccCC
Confidence 79999764 4556677899999999999984332 21111 234444443 3689999999999875
Q ss_pred ccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC---C---CCCHHHHHHHHHHHHhCCC
Q 031970 67 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK---T---QQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 67 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~---~---~~~i~~~~~~l~~~~~~~~ 123 (150)
.... ....+......++. +++++|+. + +.|+.+++..+...+...+
T Consensus 213 ~~~~----------~~~~~~~~~~~~~~-~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~ 264 (315)
T 1jwy_B 213 KGTD----------AMEVLTGRVIPLTL-GFIGVINRSQEDIIAKKSIRESLKSEILYFKNHP 264 (315)
T ss_dssp SSCC----------CHHHHTTSSSCCTT-CEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCT
T ss_pred cchH----------HHHHHhCCCccCCC-CeEEEecCChhhhccCCCHHHHHHHHHHHHhCCC
Confidence 4321 22222211111112 55555554 4 6899999999998886543
No 191
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.00 E-value=6.1e-10 Score=80.48 Aligned_cols=113 Identities=10% Similarity=-0.060 Sum_probs=65.9
Q ss_pred CCCCCccccccccc------ccccCCcEEEEEEeCCChhhHHHHHHHH--H-HHHhhhCCCCCEEEEeeCCCcccccccc
Q 031970 1 MNVIGQEDYNRLRP------LSYRGADVFVLAFSLVSRASYENVLKKW--I-PELQHYSPGVPVVLVGTKLDLREDKHYL 71 (150)
Q Consensus 1 wDt~G~e~~~~l~~------~~~~~ad~~i~v~d~~~~~s~~~~~~~~--~-~~i~~~~~~~piilv~nK~D~~~~~~~~ 71 (150)
|||||+.++..+.. .++.+ +++++++|.....+..+....+ . ..... .+.|+++|+||+|+.......
T Consensus 114 iDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~~~~~~~ 190 (262)
T 1yrb_A 114 IDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSEEEKE 190 (262)
T ss_dssp EECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCHHHHH
T ss_pred EeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEecccccccccHH
Confidence 79999987654432 14466 8888898876433332221111 1 11111 268999999999987532100
Q ss_pred cCCCCCCcc--CHHHH-HH-----------------HHHHcCC-cEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970 72 ADHPGLVPV--TTAQG-EE-----------------LRKQIGA-SYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 72 ~~~~~~~~v--~~~~~-~~-----------------~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
. .... ..... .. +++.++. .+++++||+++.|++++++.+.+.+.
T Consensus 191 ~----~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 191 R----HRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp H----HHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred H----HHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 0 0000 00000 00 1234442 27899999999999999999988764
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.98 E-value=1.5e-09 Score=76.41 Aligned_cols=86 Identities=19% Similarity=0.103 Sum_probs=59.7
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcC-CcEE
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-ASYY 97 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~ 97 (150)
.++++++|+|+++..... ..+.... +.|+++|+||+|+.+.... ....+...++..+ ..++
T Consensus 129 ~~~~~i~vvd~~~~~~~~---~~~~~~~-----~~~~iiv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~i 190 (221)
T 2wsm_A 129 GENYRVVMVSVTEGDDVV---EKHPEIF-----RVADLIVINKVALAEAVGA----------DVEKMKADAKLINPRAKI 190 (221)
T ss_dssp SCSEEEEEEEGGGCTTHH---HHCHHHH-----HTCSEEEEECGGGHHHHTC----------CHHHHHHHHHHHCTTSEE
T ss_pred ccCcEEEEEeCCCcchhh---hhhhhhh-----hcCCEEEEecccCCcchhh----------HHHHHHHHHHHhCCCCeE
Confidence 578899999998754321 1222221 4799999999998653211 4455555555543 2489
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhCC
Q 031970 98 IECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 98 ~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
+++||+++.|++++++.+.+.+...
T Consensus 191 ~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 191 IEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHC--
T ss_pred EEeecCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999887543
No 193
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.95 E-value=8.2e-10 Score=81.39 Aligned_cols=98 Identities=15% Similarity=0.131 Sum_probs=70.0
Q ss_pred CCCcc-cccccccccccCCcEEEEEEeCCChhhHHH-HHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970 3 VIGQE-DYNRLRPLSYRGADVFVLAFSLVSRASYEN-VLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 3 t~G~e-~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~-~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
.|||. +........++.+|+++.|+|+.+|.+... .+..|+ .++|+++|+||+|+....
T Consensus 6 ~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~~~------------ 66 (282)
T 1puj_A 6 FPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKADAA------------ 66 (282)
T ss_dssp ---CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSCHH------------
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCCHH------------
Confidence 46765 333444557889999999999999987753 113332 479999999999997532
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970 81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
..+....+.+..+. +++++||+++.|+.+++..+.+.+.
T Consensus 67 ~~~~~~~~~~~~g~-~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 67 VTQQWKEHFENQGI-RSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HHHHHHHHHHTTTC-CEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-cEEEEECCCcccHHHHHHHHHHHHH
Confidence 22334455555566 8999999999999999998877764
No 194
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.94 E-value=5.7e-11 Score=88.34 Aligned_cols=109 Identities=8% Similarity=0.020 Sum_probs=60.8
Q ss_pred CCCCCc-------cccccccc-------ccccCC-------------cEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCC
Q 031970 1 MNVIGQ-------EDYNRLRP-------LSYRGA-------------DVFVLAFSLVSRASYENVLKKWIPELQHYSPGV 53 (150)
Q Consensus 1 wDt~G~-------e~~~~l~~-------~~~~~a-------------d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~ 53 (150)
|||+|+ +.|..+.. .|++++ ++++++.+++.. +++.....++ .....+.
T Consensus 81 ~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~~~l---~~l~~~~ 156 (301)
T 2qnr_A 81 VDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDVAFM---KAIHNKV 156 (301)
T ss_dssp EEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHHHHH---HHHTTTS
T ss_pred hhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHHHHH---HHHHhcC
Confidence 899998 66666654 444433 335555554321 2333211233 3333468
Q ss_pred CEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970 54 PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 54 piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
|+++|+||.|+.+.... .+..+++..+++.+++ +++++||+++ +++++|..+++.+....
T Consensus 157 ~iilV~~K~Dl~~~~e~--------~~~~~~~~~~~~~~~~-~~~e~Sa~~~-~v~e~f~~l~~~i~~~~ 216 (301)
T 2qnr_A 157 NIVPVIAKADTLTLKER--------ERLKKRILDEIEEHNI-KIYHLPDAES-DEDEDFKEQTRLLKASI 216 (301)
T ss_dssp CEEEEECCGGGSCHHHH--------HHHHHHHHHHHHHTTC-CCCCCC----------CHHHHHHHHTTC
T ss_pred CEEEEEEeCCCCCHHHH--------HHHHHHHHHHHHHcCC-eEEecCCccc-cccHHHHHHHHHhhcCC
Confidence 99999999998754321 1134677888899997 9999999999 99999999999886543
No 195
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.93 E-value=5.6e-10 Score=84.67 Aligned_cols=101 Identities=13% Similarity=0.090 Sum_probs=65.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||... .....+..+|++++|+|.......+.+ . ....+.|+++|+||+|+.+.... ..
T Consensus 177 iDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l-~-------~~~~~~p~ivVlNK~Dl~~~~~~--------~~ 237 (355)
T 3p32_A 177 IETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGI-K-------KGVLELADIVVVNKADGEHHKEA--------RL 237 (355)
T ss_dssp EEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTC-C-------TTSGGGCSEEEEECCCGGGHHHH--------HH
T ss_pred EeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHH-H-------HhHhhcCCEEEEECCCCcChhHH--------HH
Confidence 69999432 112235789999999998876554332 1 11124699999999998654221 00
Q ss_pred CHHHHHHHHHHc-------CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970 81 TTAQGEELRKQI-------GASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 81 ~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
...+........ + .+++++||++|.|++++++.+.+.+..
T Consensus 238 ~~~~l~~~l~~~~~~~~~~~-~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 238 AARELSAAIRLIYPREALWR-PPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHSTTCCSCC-CCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccCCC-CceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 111222222212 3 389999999999999999999988754
No 196
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.89 E-value=8e-09 Score=82.51 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=50.8
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 67 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 67 (150)
||||+.+|..-....++-+|++|+|+|+......+-. .-|. ...+. ++|++++.||.|....
T Consensus 106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~~-~a~~~--~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMD-VCRMR--ATPVMTFVNKMDREAL 167 (548)
T ss_dssp CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHHH-HHHHT--TCCEEEEEECTTSCCC
T ss_pred eCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHHH-HHHHh--CCceEEEEecccchhc
Confidence 9999999999999999999999999999987766654 4453 33332 7999999999997543
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.78 E-value=2.1e-09 Score=89.73 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=53.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 66 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 66 (150)
|||||+++|...+..+++.+|++|+|+|+++..+++.. ..|..... .++|+++|+||+|+..
T Consensus 103 iDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~~---~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 103 IDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALG---ERIKPVVVINKVDRAL 164 (842)
T ss_dssp ECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHH---TTCEEEEEEECHHHHH
T ss_pred EECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCeEEEEECCCcch
Confidence 89999999999999999999999999999999888875 55654333 3689999999999874
No 198
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.78 E-value=3.6e-10 Score=85.60 Aligned_cols=104 Identities=17% Similarity=0.091 Sum_probs=64.5
Q ss_pred CCCCCcc-------------cccccccccccCCcE-EEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970 1 MNVIGQE-------------DYNRLRPLSYRGADV-FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 66 (150)
Q Consensus 1 wDt~G~e-------------~~~~l~~~~~~~ad~-~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 66 (150)
|||||.. .+..+...|++.++. +++|.|.+......+. ..+++.+.. .+.|+++|+||+|+..
T Consensus 135 vDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~-~~i~~~~~~--~~~~~i~V~NK~Dl~~ 211 (353)
T 2x2e_A 135 VDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LKVAKEVDP--QGQRTIGVITKLDLMD 211 (353)
T ss_dssp EECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH-HHHHHHHCT--TCTTEEEEEECGGGSC
T ss_pred EECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH-HHHHHHhCc--CCCceEEEeccccccC
Confidence 8999963 455566778877664 4455666543333332 234544443 3689999999999975
Q ss_pred ccccccCCCCCCccCHHHHHH--HHHHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031970 67 DKHYLADHPGLVPVTTAQGEE--LRKQIGASYYIECSSKTQQNVKAVFDAAIK 117 (150)
Q Consensus 67 ~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 117 (150)
.... ....... +....++.+++++||+++.|++++++.+.+
T Consensus 212 ~~~~----------~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 212 EGTD----------ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp TTCC----------CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred cchh----------HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 4321 1111110 000123346788999999999999998876
No 199
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.77 E-value=3.8e-09 Score=76.79 Aligned_cols=66 Identities=14% Similarity=0.081 Sum_probs=48.9
Q ss_pred CCCCCccccccccccccc---------CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC---CCCEEEEeeCCCcccc
Q 031970 1 MNVIGQEDYNRLRPLSYR---------GADVFVLAFSLVSRASYENVLKKWIPELQHYSP---GVPVVLVGTKLDLRED 67 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~---------~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~D~~~~ 67 (150)
|||||+++|..+.+.+++ ++|++++|+|++... +......|++.+..... ..|+++|+||+|+...
T Consensus 89 iDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 89 IDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp EECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred EECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 899999999887766665 789999999998754 32221466766665432 2499999999998643
No 200
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.76 E-value=3e-09 Score=82.38 Aligned_cols=94 Identities=7% Similarity=0.015 Sum_probs=49.2
Q ss_pred ccccccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCH--HHHHHHH
Q 031970 13 RPLSYRGADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTT--AQGEELR 89 (150)
Q Consensus 13 ~~~~~~~ad~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~--~~~~~~~ 89 (150)
.+.++.++++.+++|+.... .++...-..|+..+. .++|+|+|+||+|+..... +.. ..+...+
T Consensus 130 aRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~e----------v~~~k~~i~~~~ 196 (418)
T 2qag_C 130 NRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEE----------CQQFKKQIMKEI 196 (418)
T ss_dssp CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHH----------HHHHHHHHHHHH
T ss_pred HHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHH----------HHHHHHHHHHHH
Confidence 35567777755555555432 233333125666665 3799999999999875432 122 5677788
Q ss_pred HHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970 90 KQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 90 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
...++ +++++||+++.++.++|..+...+.
T Consensus 197 ~~~~i-~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 197 QEHKI-KIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHTC-CCCCCC-----------------CC
T ss_pred HHcCC-eEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 88887 8999999999999999888877653
No 201
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.73 E-value=4e-09 Score=81.21 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=33.3
Q ss_pred CCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHH
Q 031970 52 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 113 (150)
Q Consensus 52 ~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 113 (150)
.+|+++|+||+|+.. .. ....+.......+. +++++||+.+.++.++++
T Consensus 214 ~kP~i~v~NK~D~~~-~~-----------~l~~l~~~~~~~~~-~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 214 NKPMVIAANKADAAS-DE-----------QIKRLVREEEKRGY-IVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HSCEEEEEECGGGSC-HH-----------HHHHHHHHHHHTTC-EEEEECHHHHHHHHSCSS
T ss_pred CCCEEEEEeCccccc-hH-----------HHHHHHHHHhhcCC-cEEEEeccchhhHHHHHh
Confidence 389999999999762 11 22333333333354 899999999988876544
No 202
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.71 E-value=9.4e-09 Score=83.47 Aligned_cols=118 Identities=12% Similarity=0.084 Sum_probs=78.3
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc---------cc
Q 031970 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY---------LA 72 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~---------~~ 72 (150)
|||||.+|..-....++-+|++|+|+|+......+-. .-|. ...+. ++|+|++.||.|....... +.
T Consensus 73 DTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~-~v~~-~a~~~--~lp~i~~INKmDr~~a~~~~~~~~i~~~l~ 148 (638)
T 3j25_A 73 DTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTR-ILFH-ALRKM--GIPTIFFINKIDQNGIDLSTVYQDIKEKLS 148 (638)
T ss_dssp ECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHH-HHHH-HHHHH--TCSCEECCEECCSSSCCSHHHHHHHHHTTC
T ss_pred ECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHH-HHHH-HHHHc--CCCeEEEEeccccccCCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999986655443 3343 33333 6899999999997543211 00
Q ss_pred CC------CC------CCcc-CHH-----------------------------HHHHHHHHcCCcEEEEeccCCCCCHHH
Q 031970 73 DH------PG------LVPV-TTA-----------------------------QGEELRKQIGASYYIECSSKTQQNVKA 110 (150)
Q Consensus 73 ~~------~~------~~~v-~~~-----------------------------~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (150)
.. .. .... ..+ ....-.....+.|++..||+++.||..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~ 228 (638)
T 3j25_A 149 AEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDN 228 (638)
T ss_dssp CCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHH
T ss_pred CCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchh
Confidence 00 00 0000 000 001111222345888999999999999
Q ss_pred HHHHHHHHHhCCC
Q 031970 111 VFDAAIKVVIKPP 123 (150)
Q Consensus 111 ~~~~l~~~~~~~~ 123 (150)
+++.+.+.+..+.
T Consensus 229 LLd~i~~~~p~p~ 241 (638)
T 3j25_A 229 LIEVITNKFYSST 241 (638)
T ss_dssp HHHHHHHSCCCSG
T ss_pred HhhhhhccccCcc
Confidence 9999999887653
No 203
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.65 E-value=2e-08 Score=75.79 Aligned_cols=101 Identities=16% Similarity=0.179 Sum_probs=61.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||...+... ....+|++++|+|++.....+.+ .. .. .+.|.++|+||+|+...... ..
T Consensus 154 iDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l-~~---~~----~~~p~ivv~NK~Dl~~~~~~--------~~ 214 (341)
T 2p67_A 154 VETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGI-KK---GL----MEVADLIVINKDDGDNHTNV--------AI 214 (341)
T ss_dssp EEEECCTTHHHH---HHTTCSEEEEEECC------CCC-CH---HH----HHHCSEEEECCCCTTCHHHH--------HH
T ss_pred EeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHH-HH---hh----hcccCEEEEECCCCCChHHH--------HH
Confidence 699996654332 46899999999999765432211 11 11 14689999999998653210 00
Q ss_pred CHHHHHHHHHHcC------CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970 81 TTAQGEELRKQIG------ASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 81 ~~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
...++......++ ..+++++||+++.|++++++.+...+.
T Consensus 215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1112222222222 247899999999999999999988664
No 204
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.62 E-value=3.9e-08 Score=71.64 Aligned_cols=66 Identities=12% Similarity=0.080 Sum_probs=46.4
Q ss_pred CCCCCcccccccccc---------cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-C--CCEEEEeeCCCcccc
Q 031970 1 MNVIGQEDYNRLRPL---------SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-G--VPVVLVGTKLDLRED 67 (150)
Q Consensus 1 wDt~G~e~~~~l~~~---------~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~D~~~~ 67 (150)
|||||++++..+... ..+.+|++|+|+|++.. ++......|+..+..... + .|+++|+||+|+...
T Consensus 92 iDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 92 IDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp EECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred EECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 899999988755432 23479999999998763 232221467777765433 2 699999999998654
No 205
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.56 E-value=3.3e-07 Score=75.26 Aligned_cols=61 Identities=23% Similarity=0.256 Sum_probs=50.0
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 66 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 66 (150)
|||||-+|..-....++-+|++|+|+|+......+-. .-|...... ++|++++.||.|...
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~a~~~---~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQANKY---GVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHH---TCCEEEEEECSSSTT
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHHHHHc---CCCeEEEEccccccC
Confidence 9999999999889999999999999999987666553 344443333 799999999999753
No 206
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.55 E-value=1.1e-09 Score=77.31 Aligned_cols=59 Identities=22% Similarity=0.163 Sum_probs=45.5
Q ss_pred CCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcC-CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970 52 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-ASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 52 ~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
+.|.++|+||+|+.+... +...++..+++.++ ..+++++||+++.|++++|+.+.+.+.
T Consensus 164 ~~~~iiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVG----------ADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp TTCSEEEEECGGGHHHHT----------CCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhH----------HHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 367899999999875432 14566666666542 238999999999999999999988764
No 207
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.53 E-value=3.2e-08 Score=72.12 Aligned_cols=93 Identities=15% Similarity=0.091 Sum_probs=63.2
Q ss_pred CCccccc-ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCH
Q 031970 4 IGQEDYN-RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTT 82 (150)
Q Consensus 4 ~G~e~~~-~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~ 82 (150)
|||.... ......+..+|+++.|+|+.+|.+.... . +. .. ++|.++|.||+|+.+.. ..
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~----l~-ll-~k~~iivlNK~DL~~~~------------~~ 64 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--G----VD-FS-RKETIILLNKVDIADEK------------TT 64 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--T----SC-CT-TSEEEEEEECGGGSCHH------------HH
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--H----HH-hc-CCCcEEEEECccCCCHH------------HH
Confidence 5665422 2344578899999999999998877532 1 11 12 68999999999997632 22
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970 83 AQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
+....+.+..+. ++ .+||+++.|+++++..+...
T Consensus 65 ~~~~~~~~~~g~-~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 65 KKWVEFFKKQGK-RV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp HHHHHHHHHTTC-CE-EECCTTSCHHHHHHHHCCCT
T ss_pred HHHHHHHHHcCC-eE-EEECCCCcCHHHHHHHHHHh
Confidence 344455556676 67 99999999999998876543
No 208
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.53 E-value=2.3e-07 Score=70.25 Aligned_cols=97 Identities=13% Similarity=0.107 Sum_probs=57.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
+||+|...- .......+|++++|+|++.+...+.+ .. .+ -+.|.++|+||+|+.+...
T Consensus 172 iDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i-~~---~i----l~~~~ivVlNK~Dl~~~~~----------- 229 (349)
T 2www_A 172 IETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGI-KR---GI----IEMADLVAVTKSDGDLIVP----------- 229 (349)
T ss_dssp EECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHH-----------
T ss_pred EECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHh-HH---HH----HhcCCEEEEeeecCCCchh-----------
Confidence 588885311 12245689999999999876443322 11 12 1468899999999864321
Q ss_pred CHHHHHHHHHH----------cCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970 81 TTAQGEELRKQ----------IGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 81 ~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
.......+... +. .+++++||+++.|++++++.|.+.+.
T Consensus 230 ~~~~~~~l~~~l~~~~~~a~~~~-~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 230 ARRIQAEYVSALKLLRKRSQVWK-PKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHHHHHHTTCC-----CC-CEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccccCCC-ceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 11112222211 12 37899999999999999999988763
No 209
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.51 E-value=6e-08 Score=72.20 Aligned_cols=93 Identities=25% Similarity=0.241 Sum_probs=65.6
Q ss_pred cccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccc--cccCCCCCCccCHHHH
Q 031970 8 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH--YLADHPGLVPVTTAQG 85 (150)
Q Consensus 8 ~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~v~~~~~ 85 (150)
+-+.+.+....++|.+++|+|+.+|......+++++..... .++|+++|.||+|+.+... . .....
T Consensus 75 R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~--~~~~~vivlnK~DL~~~~~~~~----------~~~~~ 142 (307)
T 1t9h_A 75 RTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQDTED----------TIQAY 142 (307)
T ss_dssp CSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHHHHH----------HHHHH
T ss_pred hhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCccCchhhhHH----------HHHHH
Confidence 34456666789999999999999876444444777654443 3789999999999986421 0 12344
Q ss_pred HHHHHHcCCcEEEEeccCCCCCHHHHHH
Q 031970 86 EELRKQIGASYYIECSSKTQQNVKAVFD 113 (150)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 113 (150)
..+.+..+. +++.+||.++.|+++++.
T Consensus 143 ~~~y~~~g~-~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 143 AEDYRNIGY-DVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp HHHHHHHTC-CEEECCHHHHTTCTTTGG
T ss_pred HHHHHhCCC-eEEEEecCCCCCHHHHHh
Confidence 445555676 889999999988877665
No 210
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.47 E-value=3e-08 Score=79.29 Aligned_cols=64 Identities=16% Similarity=0.145 Sum_probs=49.8
Q ss_pred CCCCCccc-----------ccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970 1 MNVIGQED-----------YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 67 (150)
Q Consensus 1 wDt~G~e~-----------~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 67 (150)
|||||+.. |..+...++..+|++|+|+|+++....... ..|+..+... +.|+++|+||+|+...
T Consensus 159 IDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~--~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 159 IDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF-SEAIGALRGH--EDKIRVVLNKADMVET 233 (550)
T ss_dssp EECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH-HHHHHHTTTC--GGGEEEEEECGGGSCH
T ss_pred EECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH-HHHHHHHHhc--CCCEEEEEECCCccCH
Confidence 79999875 556666788999999999999886444444 5677666543 5899999999998754
No 211
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.42 E-value=3.5e-06 Score=64.02 Aligned_cols=57 Identities=11% Similarity=0.128 Sum_probs=40.1
Q ss_pred CCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC----------------------CCCHH
Q 031970 52 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT----------------------QQNVK 109 (150)
Q Consensus 52 ~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~----------------------~~~i~ 109 (150)
.+|+++++|+.|..-..+ .....+..++...+. +++++||+. ..|++
T Consensus 199 ~KPvi~v~N~~e~~~~~n----------~~~~~v~~~~~~~~~-~~i~~sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~ 267 (363)
T 1jal_A 199 LKPTMYIANVNEDGFENN----------PYLDRVREIAAKEGA-VVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLN 267 (363)
T ss_dssp TSCEEEEEECCTTCSSSC----------HHHHHHHHHHHHTTC-EEEEECHHHHHHGGGSCSSTTHHHHTTSSCCSCTTH
T ss_pred CCcEEEEEeccccccccc----------HHHHHHHHHHHHcCC-CEEEechHHHHHHHhcCHHHHHHHHHHhCcccccHH
Confidence 499999999998542111 255677788888886 899999763 35677
Q ss_pred HHHHHHHHHH
Q 031970 110 AVFDAAIKVV 119 (150)
Q Consensus 110 ~~~~~l~~~~ 119 (150)
.++....+.+
T Consensus 268 ~li~~~~~~L 277 (363)
T 1jal_A 268 RVIRAGYALL 277 (363)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 7777655544
No 212
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.35 E-value=5.1e-08 Score=80.33 Aligned_cols=104 Identities=17% Similarity=0.086 Sum_probs=68.2
Q ss_pred CCCCCccc-------------ccccccccc-cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970 1 MNVIGQED-------------YNRLRPLSY-RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 66 (150)
Q Consensus 1 wDt~G~e~-------------~~~l~~~~~-~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 66 (150)
+||||..+ +..+...|+ ..+|++++|.|++...+..+. ..++..+... +.|+++|.||+|+..
T Consensus 155 VDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~-l~ll~~L~~~--g~pvIlVlNKiDlv~ 231 (772)
T 3zvr_A 155 VDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LKIAKEVDPQ--GQRTIGVITKLDLMD 231 (772)
T ss_dssp EECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH-HHHHHHHCTT--CSSEEEEEECTTSSC
T ss_pred EECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH-HHHHHHHHhc--CCCEEEEEeCcccCC
Confidence 49999543 233444455 478999999999976544443 2455555543 689999999999976
Q ss_pred ccccccCCCCCCccCHHHHHH--HHHHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031970 67 DKHYLADHPGLVPVTTAQGEE--LRKQIGASYYIECSSKTQQNVKAVFDAAIK 117 (150)
Q Consensus 67 ~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 117 (150)
.... ....... +....++.+++.+||+++.|++++++.+.+
T Consensus 232 ~~~~----------~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 232 EGTD----------ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp TTCC----------SHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred cchh----------hHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 4321 1111110 000123446788999999999999999887
No 213
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.24 E-value=3.7e-06 Score=64.07 Aligned_cols=52 Identities=12% Similarity=0.064 Sum_probs=34.8
Q ss_pred CCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHH
Q 031970 52 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAV 111 (150)
Q Consensus 52 ~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 111 (150)
.+|+++++||.|..-... ..+.....+..+++..+. +++++||+...++.++
T Consensus 201 ~KPvi~v~N~~e~d~~~~-------~~n~~~~~v~~~a~~~g~-~vv~iSAk~E~el~eL 252 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDG-------RGNPQVEAVRRKALEEGA-EVVVVSARLEAELAEL 252 (368)
T ss_dssp GSCEEEEEECCGGGTTTC-------TTCHHHHHHHHHHHHHTC-EEEEECHHHHHHHHTS
T ss_pred cCCeEEeccccHHhhccc-------chhhHHHHHHHHHHHcCC-eEEEeechhHHHHHHh
Confidence 379999999998421100 001256777888888886 9999999874444433
No 214
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.06 E-value=2.8e-05 Score=58.99 Aligned_cols=87 Identities=20% Similarity=0.243 Sum_probs=57.8
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 031970 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 95 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 95 (150)
...++|.+++|... +|......++.++-..... ++|+++|.||+|+.+.... -..+.........|.
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~~---------~~~~~~~~~y~~~G~- 193 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEGM---------DFVNEQMDIYRNIGY- 193 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHHH---------HHHHHHHHHHHTTTC-
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchhH---------HHHHHHHHHHHhCCC-
Confidence 36789999988665 4553333346776544332 6889999999999764210 001233344455676
Q ss_pred EEEEeccCCCCCHHHHHHHH
Q 031970 96 YYIECSSKTQQNVKAVFDAA 115 (150)
Q Consensus 96 ~~~~~Sa~~~~~i~~~~~~l 115 (150)
+++.+||.++.|++++...+
T Consensus 194 ~v~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 194 RVLMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp CEEECBTTTTBTHHHHHHHH
T ss_pred cEEEEecCCCcCHHHHHHhc
Confidence 78999999999999887643
No 215
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.99 E-value=1e-05 Score=60.82 Aligned_cols=99 Identities=11% Similarity=0.134 Sum_probs=58.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
+||+|...-. ......+|.+++|+|.......+.+ .. .+. +.|.++|.||+|+......
T Consensus 153 iDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i-~~---~i~----~~~~ivvlNK~Dl~~~~~~---------- 211 (337)
T 2qm8_A 153 VETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGI-KK---GIF----ELADMIAVNKADDGDGERR---------- 211 (337)
T ss_dssp EEECSSSSCH---HHHHTTSSEEEEEECSCC------C-CT---THH----HHCSEEEEECCSTTCCHHH----------
T ss_pred EECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHH-HH---HHh----ccccEEEEEchhccCchhH----------
Confidence 4888864311 1234689999999998754332211 11 111 2466788899997532210
Q ss_pred CHHHHHHHHHHc---C------CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970 81 TTAQGEELRKQI---G------ASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 81 ~~~~~~~~~~~~---~------~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
...+.+.+.... + ..+++.+||+++.|++++++.+.+...
T Consensus 212 s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 212 ASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222233333221 1 247889999999999999999988654
No 216
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.011 Score=45.05 Aligned_cols=110 Identities=9% Similarity=0.059 Sum_probs=59.7
Q ss_pred CCCCCcccccc----ccc---ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccC
Q 031970 1 MNVIGQEDYNR----LRP---LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD 73 (150)
Q Consensus 1 wDt~G~e~~~~----l~~---~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~ 73 (150)
.||||.-+-.. +.. ..++.||++++|.|.++|..-.+.+..-+..+.......|.+++.||.|....... .
T Consensus 124 ~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~--~ 201 (376)
T 4a9a_A 124 LDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISIT--N 201 (376)
T ss_dssp EECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEE--E
T ss_pred EeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhh--c
Confidence 38888643211 111 24678999999999999864433322223222222246789999999997543211 1
Q ss_pred CCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHH
Q 031970 74 HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 113 (150)
Q Consensus 74 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 113 (150)
.........++...+...+.+ ..-++-...+...+++.+
T Consensus 202 ~~~~~~l~~eeik~il~~~~l-t~kpv~~~~nv~eddl~d 240 (376)
T 4a9a_A 202 TVPLTHLGNDEIRAVMSEYRI-NSAEIAFRCDATVDDLID 240 (376)
T ss_dssp SSCCSSCCHHHHHHHHHHTTC-CSEEEEECSCCCHHHHHH
T ss_pred chhhhhccHHHHHHHHHHhcc-cCCCeeecccCCHHHHHH
Confidence 112223456666667666654 222233333445555554
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.07 E-value=0.0016 Score=51.55 Aligned_cols=97 Identities=13% Similarity=0.049 Sum_probs=57.7
Q ss_pred CCCCCcccccc-cccc---c--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCCcccccccccC
Q 031970 1 MNVIGQEDYNR-LRPL---S--YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLDLREDKHYLAD 73 (150)
Q Consensus 1 wDt~G~e~~~~-l~~~---~--~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilv~nK~D~~~~~~~~~~ 73 (150)
+||||...... +... . +..+|.+++|+|++...... .....+.. ..|+ .+|.||.|......
T Consensus 189 IDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~----~~a~~~~~---~~~i~gvVlNK~D~~~~~g---- 257 (504)
T 2j37_W 189 VDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE----AQAKAFKD---KVDVASVIVTKLDGHAKGG---- 257 (504)
T ss_dssp EEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH----HHHHHHHH---HHCCCCEEEECTTSCCCCT----
T ss_pred EeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH----HHHHHHHh---hcCceEEEEeCCccccchH----
Confidence 59999764221 1110 1 22789999999998764422 22333333 2575 89999999764321
Q ss_pred CCCCCccCHHHHHHHHHHcCC-----------------cEEEEeccCCCCC-HHHHHHHHHHH
Q 031970 74 HPGLVPVTTAQGEELRKQIGA-----------------SYYIECSSKTQQN-VKAVFDAAIKV 118 (150)
Q Consensus 74 ~~~~~~v~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~-i~~~~~~l~~~ 118 (150)
........++. .+...+|+..|.| +.++++.+.+.
T Consensus 258 ----------~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 258 ----------GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp ----------HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ----------HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 11122333443 1223479999999 99999888765
No 218
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.44 E-value=0.0023 Score=49.16 Aligned_cols=34 Identities=9% Similarity=-0.014 Sum_probs=19.2
Q ss_pred CCCCCcccccc----c---ccccccCCcEEEEEEeCCChhh
Q 031970 1 MNVIGQEDYNR----L---RPLSYRGADVFVLAFSLVSRAS 34 (150)
Q Consensus 1 wDt~G~e~~~~----l---~~~~~~~ad~~i~v~d~~~~~s 34 (150)
|||||+.++.+ + ...+++++|++++|+|+++..+
T Consensus 91 vDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 91 VDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp EECCC-----------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred EECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 89999988654 2 2457889999999999986443
No 219
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.64 E-value=0.15 Score=38.97 Aligned_cols=57 Identities=9% Similarity=0.035 Sum_probs=40.3
Q ss_pred CCEEEEeeCCCccc--ccccccCCCCCCccCHHHHHHHHHHcC-CcEEEEeccCC---------------------CCCH
Q 031970 53 VPVVLVGTKLDLRE--DKHYLADHPGLVPVTTAQGEELRKQIG-ASYYIECSSKT---------------------QQNV 108 (150)
Q Consensus 53 ~piilv~nK~D~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~---------------------~~~i 108 (150)
.|+++++|+.|..- ..+. ....+..++...+ ..+++++||+. ..|+
T Consensus 225 kp~~y~~Nv~e~~~~~~~~~----------~~~~~~~~~~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl 294 (392)
T 1ni3_A 225 KPVIYLVNMSERDFLRQKNK----------YLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSML 294 (392)
T ss_dssp SCEEEEEECCHHHHTTTCCS----------SHHHHHHHHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSH
T ss_pred CceEEEEEecchhhcccchH----------HHHHHHHHHHhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccH
Confidence 89999999998421 1111 4566777777665 13789999886 5788
Q ss_pred HHHHHHHHHHH
Q 031970 109 KAVFDAAIKVV 119 (150)
Q Consensus 109 ~~~~~~l~~~~ 119 (150)
..++....+.+
T Consensus 295 ~~~i~~~~~~L 305 (392)
T 1ni3_A 295 PKIIVTGYNAL 305 (392)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 88888886655
No 220
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.30 E-value=0.12 Score=34.94 Aligned_cols=59 Identities=7% Similarity=-0.036 Sum_probs=39.8
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcc
Q 031970 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLR 65 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~ 65 (150)
|||+.- .......+..+|.+|++...+... ..+ ...++.+.+.. ++.++.+|.|+.|..
T Consensus 82 D~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 82 DGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSA-AGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp ECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHH-HHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred ECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHH-HHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 666544 233345667799999999987654 454 56666665542 357889999999854
No 221
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.17 E-value=0.16 Score=37.22 Aligned_cols=85 Identities=12% Similarity=0.059 Sum_probs=50.6
Q ss_pred CCCCccc--ccc-ccc-----ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCccccccccc
Q 031970 2 NVIGQED--YNR-LRP-----LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLA 72 (150)
Q Consensus 2 Dt~G~e~--~~~-l~~-----~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~ 72 (150)
||||... ... +.. .....+|.+++|.|.+.... . -.....+.. ..| ..+|.||.|...
T Consensus 187 DTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~-~~~~~~~~~---~~~i~gvVlnk~D~~~------ 253 (297)
T 1j8m_F 187 DTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---A-YDLASKFNQ---ASKIGTIIITKMDGTA------ 253 (297)
T ss_dssp ECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---H-HHHHHHHHH---TCTTEEEEEECGGGCT------
T ss_pred eCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---H-HHHHHHHHh---hCCCCEEEEeCCCCCc------
Confidence 8888766 211 111 12447899999999875422 2 122333333 356 678999999653
Q ss_pred CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHH
Q 031970 73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKA 110 (150)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (150)
....+..+....+. |+..++ .|+++++
T Consensus 254 --------~~g~~~~~~~~~~~-pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 --------KGGGALSAVAATGA-TIKFIG--TGEKIDE 280 (297)
T ss_dssp --------THHHHHHHHHTTTC-CEEEEE--CSSSTTC
T ss_pred --------chHHHHHHHHHHCc-CEEEEe--CCCChhh
Confidence 23445566777776 777766 4666644
No 222
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.94 E-value=0.15 Score=39.62 Aligned_cols=68 Identities=12% Similarity=-0.043 Sum_probs=41.9
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 031970 18 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 97 (150)
Q Consensus 18 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 97 (150)
..+|.+++|.|++....... ....+.+. -.+..+|.||.|... ....+.......+. |+
T Consensus 211 ~~pd~vlLVvDA~~gq~a~~----~a~~f~~~--~~i~gVIlTKlD~~~--------------~gG~~ls~~~~~g~-PI 269 (443)
T 3dm5_A 211 IHPHEVILVIDGTIGQQAYN----QALAFKEA--TPIGSIIVTKLDGSA--------------KGGGALSAVAATGA-PI 269 (443)
T ss_dssp HCCSEEEEEEEGGGGGGHHH----HHHHHHHS--CTTEEEEEECCSSCS--------------SHHHHHHHHHTTCC-CE
T ss_pred hcCceEEEEEeCCCchhHHH----HHHHHHhh--CCCeEEEEECCCCcc--------------cccHHHHHHHHHCC-CE
Confidence 35789999999987544322 23344432 134568999999754 22344455556776 77
Q ss_pred EEeccCCCCCH
Q 031970 98 IECSSKTQQNV 108 (150)
Q Consensus 98 ~~~Sa~~~~~i 108 (150)
.+++. |+++
T Consensus 270 ~fig~--Ge~v 278 (443)
T 3dm5_A 270 KFIGT--GEKI 278 (443)
T ss_dssp EEEEC--SSST
T ss_pred EEEEc--CCCh
Confidence 77775 5444
No 223
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.86 E-value=0.087 Score=40.81 Aligned_cols=58 Identities=14% Similarity=0.131 Sum_probs=34.4
Q ss_pred CCCCccccc-----ccc-cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCC-C-EEEEeeCCCccc
Q 031970 2 NVIGQEDYN-----RLR-PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGV-P-VVLVGTKLDLRE 66 (150)
Q Consensus 2 Dt~G~e~~~-----~l~-~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~-p-iilv~nK~D~~~ 66 (150)
||||..... .+. -..+..+|.+++|.|++.... . ......+. +.. | ..+|.||.|...
T Consensus 187 DT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~-~~~~~~~~---~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 187 DTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---A-GIQAKAFK---EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp ECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---H-HHHHHHHH---TTSCSCEEEEEECSSSCS
T ss_pred cCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---H-HHHHHHHh---hcccCCeEEEEeCCCCcc
Confidence 899865421 110 012236899999999876542 2 12233333 235 6 789999999753
No 224
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=88.23 E-value=1.8 Score=29.58 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=34.6
Q ss_pred cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 031970 14 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 65 (150)
Q Consensus 14 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 65 (150)
...+..+|.+|++...+ ..+...+ ...++.+.+.. +.++.+|.|+.+..
T Consensus 85 ~~~l~~aD~viiv~~~~-~~~~~~~-~~~~~~l~~~~-~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 85 EALADGCDLLVIPSTPD-ALALDAL-MLTIETLQKLG-NNRFRILLTIIPPY 133 (209)
T ss_dssp HHHHHTSSEEEEEECSS-HHHHHHH-HHHHHHHHHTC-SSSEEEEECSBCCT
T ss_pred HHHHHHCCEEEEEecCC-chhHHHH-HHHHHHHHhcc-CCCEEEEEEecCCc
Confidence 44677899999998875 4455555 56666666532 56788999999854
No 225
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=86.85 E-value=0.59 Score=36.15 Aligned_cols=41 Identities=10% Similarity=0.042 Sum_probs=26.2
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970 22 VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 67 (150)
Q Consensus 22 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 67 (150)
+++++.|....-+..++ .+++.+. .++|+|+|.||+|..+.
T Consensus 151 ~v~fI~d~~~~l~~~Di--eilk~L~---~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDL--VTMKKLD---SKVNIIPIIAKADAISK 191 (427)
T ss_dssp EEEEECCCC---CHHHH--HHHHHTC---SCSEEEEEESCGGGSCH
T ss_pred EEEEEeCCCCCCCHHHH--HHHHHHh---hCCCEEEEEcchhccch
Confidence 46667777655544443 4444444 47899999999998754
No 226
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=85.41 E-value=1.3 Score=31.25 Aligned_cols=48 Identities=10% Similarity=0.151 Sum_probs=36.1
Q ss_pred cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCC
Q 031970 14 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 63 (150)
Q Consensus 14 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 63 (150)
...+..||.+|++...+ ..+...+ ....+.+.....+.++.+|.|+.+
T Consensus 161 ~~~l~~aD~vivv~~~~-~~s~~~~-~~~~~~l~~~~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 161 KNALLCSDYVIIPMTAE-KWAVESL-DLFNFFVRKLNLFLPIFLIITRFK 208 (267)
T ss_dssp HHHHTTCSEEEEEEESC-TTHHHHH-HHHHHHHHTTTCCCCEEEEEEEEC
T ss_pred HHHHHHCCeEEEEeCCC-hHHHHHH-HHHHHHHHHHhccCCEEEEEeccc
Confidence 34566799999999985 4566665 677777777666678889999984
No 227
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=83.22 E-value=9.1 Score=27.45 Aligned_cols=47 Identities=19% Similarity=0.078 Sum_probs=33.2
Q ss_pred ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEE-EEeeCCC
Q 031970 15 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVV-LVGTKLD 63 (150)
Q Consensus 15 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~pii-lv~nK~D 63 (150)
..+..+|.+|+|.+.+ ..+...+ ..+++.+.... .+.+++ +|.|+.+
T Consensus 175 ~~l~~aD~viiv~~~~-~~s~~~~-~~~~~~l~~~~~~~~~~~~gvV~N~~~ 224 (307)
T 3end_A 175 APLQHADQAVVVTAND-FDSIYAM-NRIIAAVQAKSKNYKVRLAGCVANRSR 224 (307)
T ss_dssp GGGGTCSEEEEEECSS-HHHHHHH-HHHHHHHHTTTTTCCCEEEEEEEESCS
T ss_pred HHHHHCCEEEEEecCc-HHHHHHH-HHHHHHHHHhhhcCCCceEEEEEecCC
Confidence 4567899999998764 4556665 66666666542 356665 8999998
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=83.04 E-value=3 Score=32.21 Aligned_cols=67 Identities=10% Similarity=0.006 Sum_probs=42.8
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 98 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 98 (150)
.++.+++|.|.+....... ....+.+. -.+..+|.||.|... ....+.......+. |+.
T Consensus 211 ~pd~vlLVlDa~~gq~a~~----~a~~f~~~--~~~~gVIlTKlD~~a--------------~~G~als~~~~~g~-Pi~ 269 (433)
T 3kl4_A 211 KPDDVILVIDASIGQKAYD----LASRFHQA--SPIGSVIITKMDGTA--------------KGGGALSAVVATGA-TIK 269 (433)
T ss_dssp CCSEEEEEEEGGGGGGGHH----HHHHHHHH--CSSEEEEEECGGGCS--------------CHHHHHHHHHHHTC-EEE
T ss_pred CCcceEEEEeCccchHHHH----HHHHHhcc--cCCcEEEEecccccc--------------cchHHHHHHHHHCC-CEE
Confidence 4689999999987543332 33334332 135789999999653 33445555666776 887
Q ss_pred EeccCCCCCH
Q 031970 99 ECSSKTQQNV 108 (150)
Q Consensus 99 ~~Sa~~~~~i 108 (150)
+++. |+++
T Consensus 270 fig~--Ge~v 277 (433)
T 3kl4_A 270 FIGT--GEKI 277 (433)
T ss_dssp EEEC--CSSS
T ss_pred EEEC--CCCh
Confidence 7776 5554
No 229
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=82.37 E-value=0.033 Score=42.18 Aligned_cols=75 Identities=8% Similarity=-0.003 Sum_probs=43.5
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 031970 18 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 97 (150)
Q Consensus 18 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 97 (150)
+..+.++++++......+..+ .. +..+. ..+.|++++.||.|..+... .......+.+..+. .+
T Consensus 244 ~~i~~~~~~l~~~~~~~~g~l-~~-l~~l~--~~~~~~~~v~~k~d~~~~~~-----------~~~~~~~~~~~~g~-~l 307 (369)
T 3ec1_A 244 REIHPRVYQLNEGQTLFFGGL-AR-LDYIK--GGRRSFVCYMANELTVHRTK-----------LEKADSLYANQLGE-LL 307 (369)
T ss_dssp SCCCCEEEEECTTEEEEETTT-EE-EEEEE--SSSEEEEEEECTTSCEEEEE-----------GGGHHHHHHHHBTT-TB
T ss_pred cccCceEEEEcCCceEEECCE-EE-EEEcc--CCCceEEEEecCCccccccc-----------HHHHHHHHHHhcCC-cc
Confidence 578899999988533111111 01 11111 13689999999999876543 33445556666665 55
Q ss_pred EEeccCCCCCH
Q 031970 98 IECSSKTQQNV 108 (150)
Q Consensus 98 ~~~Sa~~~~~i 108 (150)
.+.++.+..++
T Consensus 308 ~p~~~~~~~~~ 318 (369)
T 3ec1_A 308 SPPSKRYAAEF 318 (369)
T ss_dssp CSSCGGGTTTC
T ss_pred CCCCchhhhhc
Confidence 55565544333
No 230
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=78.63 E-value=0.028 Score=42.55 Aligned_cols=86 Identities=5% Similarity=-0.026 Sum_probs=46.8
Q ss_pred CCCCCcccccccc----cc----c--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc
Q 031970 1 MNVIGQEDYNRLR----PL----S--YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY 70 (150)
Q Consensus 1 wDt~G~e~~~~l~----~~----~--~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~ 70 (150)
.||||-.....+. .. + .+..+.++++++.........+ . .+..+. ..+.|++++.||.|..+...
T Consensus 216 iDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l-~-~~d~l~--~~~~~~~~v~nk~d~~~~~~- 290 (368)
T 3h2y_A 216 YDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGL-A-RFDYVS--GGRRAFTCHFSNRLTIHRTK- 290 (368)
T ss_dssp EECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTT-E-EEEEEE--SSSEEEEEEECTTSCEEEEE-
T ss_pred EeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcce-E-EEEEec--CCCceEEEEecCcccccccc-
Confidence 4899965433221 11 1 3567788888887432111121 0 011111 13689999999999887553
Q ss_pred ccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 031970 71 LADHPGLVPVTTAQGEELRKQIGASYYIECSS 102 (150)
Q Consensus 71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 102 (150)
.......+.+..+. .+.+.++
T Consensus 291 ----------~~~~~~~~~~~~g~-~l~p~~~ 311 (368)
T 3h2y_A 291 ----------LEKADELYKNHAGD-LLSPPTP 311 (368)
T ss_dssp ----------HHHHHHHHHHHBTT-TBCSSCH
T ss_pred ----------HHHHHHHHHHHhCC-ccCCCch
Confidence 34455556666664 4444443
No 231
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=74.36 E-value=14 Score=25.08 Aligned_cols=57 Identities=11% Similarity=-0.041 Sum_probs=36.5
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCC
Q 031970 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 63 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 63 (150)
|||+.-. ......+..+|.+|++.+.+ ..+...+ ..+.+.+.... -..+.+|.|+.+
T Consensus 138 D~pp~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~-~~~~~~~~~~~-~~~~~~v~N~~~ 194 (254)
T 3kjh_A 138 DMGAGIE--HLTRGTAKAVDMMIAVIEPN-LNSIKTG-LNIEKLAGDLG-IKKVRYVINKVR 194 (254)
T ss_dssp EECTTCT--TCCHHHHTTCSEEEEEECSS-HHHHHHH-HHHHHHHHHHT-CSCEEEEEEEEC
T ss_pred eCCCccc--HHHHHHHHHCCEEEEecCCC-HHHHHHH-HHHHHHHHHcC-CccEEEEEeCCC
Confidence 5655332 24455678899999999875 4556655 55555444432 245778999987
No 232
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=73.50 E-value=8.3 Score=27.53 Aligned_cols=47 Identities=13% Similarity=0.051 Sum_probs=31.4
Q ss_pred cccCCcEEEEEEeCC-ChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970 16 SYRGADVFVLAFSLV-SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 67 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~-~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 67 (150)
.+..|++.+++.|.. .+-+..+. ..+..+.. .+++|+|.+|+|....
T Consensus 108 ~iaRal~~lllldep~~gL~~lD~--~~l~~L~~---~~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 108 PDTRVHCCLYFISPTGHSLRPLDL--EFMKHLSK---VVNIIPVIAKADTMTL 155 (270)
T ss_dssp CCCSCCEEEEEECCCSSSCCHHHH--HHHHHHHT---TSEEEEEETTGGGSCH
T ss_pred hhheeeeeeEEEecCCCcCCHHHH--HHHHHHHh---cCcEEEEEeccccCCH
Confidence 455678889999965 33333332 44445544 3899999999998764
No 233
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=72.72 E-value=2.2 Score=33.10 Aligned_cols=55 Identities=11% Similarity=-0.013 Sum_probs=35.6
Q ss_pred CCCCCccc--ccccc--------cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEe
Q 031970 1 MNVIGQED--YNRLR--------PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVG 59 (150)
Q Consensus 1 wDt~G~e~--~~~l~--------~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~ 59 (150)
||+.|++. +...+ ..++..+.+.++|+|.++. +.+.. ..|...+.+. +.+++.+-
T Consensus 92 fd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R-~~~~~~~~~~--~~~vv~l~ 156 (469)
T 1bif_A 92 FLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERR-AMIFNFGEQN--GYKTFFVE 156 (469)
T ss_dssp GCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHH-HHHHHHHHHH--TCEEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHH-HHHHHHHHhc--CCcEEEEE
Confidence 67788743 23322 4567778899999999998 45444 6777766654 34555544
No 234
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=72.60 E-value=7.2 Score=26.71 Aligned_cols=60 Identities=5% Similarity=0.026 Sum_probs=40.3
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcc
Q 031970 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLR 65 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~ 65 (150)
|||+.- .......+..+|.+|++...+ ..+...+ ...++.+.+... ...+-+|.|+.+..
T Consensus 125 D~p~~~--~~~~~~~l~~ad~viiv~~~~-~~~~~~~-~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 125 DFGASI--DHVGVWVLEHLDELCIVTTPS-LQSLRRA-GQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp EEESSC--CTTHHHHGGGCSEEEEEECSS-HHHHHHH-HHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred eCCCCC--chHHHHHHHHCCEEEEEecCc-HHHHHHH-HHHHHHHHHhCCCccceEEEEecCCCC
Confidence 555533 223344677899999998875 5666666 677777766543 34577999999854
No 235
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=72.43 E-value=5.9 Score=30.38 Aligned_cols=100 Identities=11% Similarity=0.007 Sum_probs=53.5
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccC-CCCCCccCHHHHHHHHH----H
Q 031970 17 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD-HPGLVPVTTAQGEELRK----Q 91 (150)
Q Consensus 17 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~-~~~~~~v~~~~~~~~~~----~ 91 (150)
+.+.+.+++ ++.... .-+.+ .+...+... +.|+++|.||.|+.-...+++. ....+....+.+..+.. .
T Consensus 146 L~~~~~~~~-lS~G~~-~kqrv--~la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 146 FYEYDFFII-ISATRF-KKNDI--DIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp GGGCSEEEE-EESSCC-CHHHH--HHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCeEE-eCCCCc-cHHHH--HHHHHHHhc--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555 777631 11221 334444442 5899999999997522211110 00001112223333331 2
Q ss_pred cC--CcEEEEecc--CCCCCHHHHHHHHHHHHhCC
Q 031970 92 IG--ASYYIECSS--KTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 92 ~~--~~~~~~~Sa--~~~~~i~~~~~~l~~~~~~~ 122 (150)
.+ ....+.+|+ ..+.|++++.+.+.+.+.+.
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 22 236788999 66778999999999887543
No 236
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=71.95 E-value=7.2 Score=27.25 Aligned_cols=60 Identities=17% Similarity=0.127 Sum_probs=34.9
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHh---hh-CCCCCEE-EEeeCCCcc
Q 031970 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ---HY-SPGVPVV-LVGTKLDLR 65 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~---~~-~~~~pii-lv~nK~D~~ 65 (150)
|||+.-.. .....+..+|.+|++...+. .+...+ ...++.+. +. .++.+++ +|.|+.+..
T Consensus 118 D~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~-~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 118 DAPPSLSP--LTLNALAAAEGVVVPVQAEY-YALEGV-AGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp ECCSSCCH--HHHHHHHHCSEEEEEEESST-HHHHHH-HHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred eCCCCCCH--HHHHHHHHCCeEEEEecCch-HHHHHH-HHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 56654321 22334567999999999864 344443 33333333 22 3467775 899998754
No 237
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=71.86 E-value=4.1 Score=28.66 Aligned_cols=42 Identities=17% Similarity=0.025 Sum_probs=29.5
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEE-EEeeCCCc
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLDL 64 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-lv~nK~D~ 64 (150)
.+|.+|++..... .+...+ ...++.+.+. +.|++ +|.|+.|.
T Consensus 152 ~aD~viiv~~~~~-~s~~~~-~~~~~~l~~~--~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 152 KPTGVVVVSTPQE-LTAVIV-EKAINMAEET--NTSVLGLVENMSYF 194 (262)
T ss_dssp CCSEEEEEECSSS-CCHHHH-HHHHHHHHTT--TCCEEEEEETTCCE
T ss_pred cCCeEEEEecCcc-chHHHH-HHHHHHHHhC--CCCEEEEEECCCcc
Confidence 6899999988764 344555 5566666543 57777 99999874
No 238
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=70.75 E-value=7.1 Score=29.55 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=37.6
Q ss_pred CCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970 52 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 52 ~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
..|.+++.||+|... .++...+. ....++++|+..+.|++++...+.+.+
T Consensus 249 ~~p~i~v~nKid~~~---------------~eele~l~---~~~~~~~is~~~e~gLd~Li~~~y~~L 298 (376)
T 4a9a_A 249 YMPAIYVLNKIDSLS---------------IEELELLY---RIPNAVPISSGQDWNLDELLQVMWDRL 298 (376)
T ss_dssp EECEEEEEECGGGSC---------------HHHHHHHT---TSTTEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccceEEEEecccccC---------------HHHHHHHh---cccchhhhhhhhcccchhHHHHHHHHc
Confidence 579999999999543 23333332 233678999999999999999998887
No 239
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=68.08 E-value=6.4 Score=27.24 Aligned_cols=60 Identities=12% Similarity=-0.004 Sum_probs=39.1
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-------CCCCEEEEeeCCCcc
Q 031970 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-------PGVPVVLVGTKLDLR 65 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-------~~~piilv~nK~D~~ 65 (150)
|||+.-. ......+..+|.+|++.+.+ ..+...+ ..+++.+.... +..++-+|.|+.+..
T Consensus 120 D~p~~~~--~~~~~~l~~ad~vi~v~~~~-~~s~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~ 186 (260)
T 3q9l_A 120 DSPAGIE--TGALMALYFADEAIITTNPE-VSSVRDS-DRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (260)
T ss_dssp ECCSSSS--HHHHHHHHTCSEEEEEECSS-HHHHHHH-HHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHH
T ss_pred cCCCCCC--HHHHHHHHhCCEEEEEecCC-hhHHHHH-HHHHHHHHHhccccccccCCcceEEEEecCCcc
Confidence 5655322 23345677899999999874 5566665 66666666543 124677999998853
No 240
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=57.57 E-value=9.3 Score=28.42 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=12.7
Q ss_pred HHHHHHcCCcEEEEeccCC---------CCCHHHHHHHHHHHHhCC
Q 031970 86 EELRKQIGASYYIECSSKT---------QQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~---------~~~i~~~~~~l~~~~~~~ 122 (150)
...++..+. |+|.+++.+ ..+..+.|..|+..+.+.
T Consensus 304 ~~~aq~~~~-Pi~~l~~~~~~~g~~~~~~~~~~~~~~~la~~i~~~ 348 (361)
T 3pg5_A 304 PATAQDVHA-PIMELSSSDRVRGAQINQRNAYAEKINSVAANVYKA 348 (361)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCC-CeEECchhcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555665 888888755 457888899888888643
No 241
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=50.85 E-value=16 Score=24.77 Aligned_cols=67 Identities=19% Similarity=0.082 Sum_probs=41.2
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh----hCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHH
Q 031970 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQH----YSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 91 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~----~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 91 (150)
-+..||++|++...-+..---. ++.|+..+.. ...++|+.++++--...... .....++.++..
T Consensus 70 ~i~~AD~iVi~tP~Y~~s~p~~-LK~~iD~~~~~~~~~l~gK~v~~v~tsgg~~g~~-----------~a~~~Lr~il~~ 137 (199)
T 4hs4_A 70 QIATADAVVIVTPEYNYSVPGV-LKNAIDWLSRVSPQPLAGKPVALVTASPGMIGGA-----------RAQNHLRQSLVF 137 (199)
T ss_dssp HHHHSSEEEEEECCBTTBCCHH-HHHHHHHHTTSSSCTTTTCEEEEEEECSSSSCSH-----------HHHHHHHHHHHH
T ss_pred HHHhCCEEEEEcCccCCCcCHH-HHHHHHHhcccCCcccCCCEEEEEEeCCCCcccH-----------HHHHHHHHHHHH
Confidence 3678999999998877432222 2566666654 23579999988742211111 134566777777
Q ss_pred cCC
Q 031970 92 IGA 94 (150)
Q Consensus 92 ~~~ 94 (150)
.+.
T Consensus 138 lg~ 140 (199)
T 4hs4_A 138 LDA 140 (199)
T ss_dssp TTC
T ss_pred cCC
Confidence 776
No 242
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=48.77 E-value=18 Score=26.35 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=29.8
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEE
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVL 57 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piil 57 (150)
++|+++++-....+.+.+.+ ..+++.+....++.|+++
T Consensus 106 Gadavlv~~P~y~~~s~~~l-~~~f~~va~a~~~lPiil 143 (303)
T 2wkj_A 106 GFDAVSAVTPFYYPFSFEEH-CDHYRAIIDSADGLPMVV 143 (303)
T ss_dssp TCSEEEEECCCSSCCCHHHH-HHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEecCCCCCCCCHHHH-HHHHHHHHHhCCCCCEEE
Confidence 89999999888877787877 778888877554488774
No 243
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=48.76 E-value=20 Score=24.31 Aligned_cols=49 Identities=8% Similarity=-0.127 Sum_probs=32.5
Q ss_pred cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 031970 14 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 65 (150)
Q Consensus 14 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 65 (150)
...+..+|.+|++.+.. ..+...+ ...++.+.+. .-.++-+|.|+.+..
T Consensus 128 ~~~~~~ad~vi~v~~~~-~~~~~~~-~~~~~~l~~~-~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 128 MSAMLSGEEALLVTNPE-ISCLTDT-MKVGIVLKKA-GLAILGFVLNRYGRS 176 (237)
T ss_dssp HHHHTTCSEEEEEECSC-HHHHHHH-HHHHHHHHHT-TCEEEEEEEEEETSC
T ss_pred HHHHHHCCeEEEEecCC-cccHHHH-HHHHHHHHhC-CCceEEEEEecCCcc
Confidence 34567899999998875 4566665 5666666654 223455888998753
No 244
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=47.79 E-value=34 Score=23.61 Aligned_cols=59 Identities=10% Similarity=-0.018 Sum_probs=35.6
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 031970 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 65 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 65 (150)
|||+.-. ......+..+|.+|++...+ ..+...+ ...++.+.+. .-.++-+|.|+.+..
T Consensus 117 D~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~-~~~~~~l~~~-~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 117 DAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDG-LKTKIVAERL-GTKVLGVVVNRITTL 175 (263)
T ss_dssp ECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHH-HHHHHHHHHH-TCEEEEEEEEEECTT
T ss_pred eCCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHH-HHHHHHHHhc-CCCeeEEEEccCCcc
Confidence 5554322 22234566789999998865 4455555 5666666654 223445889998743
No 245
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=44.27 E-value=23 Score=21.65 Aligned_cols=65 Identities=17% Similarity=0.112 Sum_probs=38.8
Q ss_pred cccCCcEEEEEEeCCChhh-HH-HHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcC
Q 031970 16 SYRGADVFVLAFSLVSRAS-YE-NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 93 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s-~~-~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 93 (150)
.+.++|++|++.......- -. .+ ..++..+.....+.|+.++++--... . -....+...+...+
T Consensus 43 ~l~~~d~vi~g~p~y~~~~~~~~~~-~~fl~~l~~~l~~k~~~~~~t~g~~~--~-----------~~~~~l~~~l~~~g 108 (137)
T 2fz5_A 43 DVASKDVILLGCPAMGSEELEDSVV-EPFFTDLAPKLKGKKVGLFGSYGWGS--G-----------EWMDAWKQRTEDTG 108 (137)
T ss_dssp HHHTCSEEEEECCCBTTTBCCHHHH-HHHHHHHGGGCSSCEEEEEEEESSCC--S-----------HHHHHHHHHHHHTT
T ss_pred HHhcCCEEEEEccccCCCCCCHHHH-HHHHHHhhhhcCCCEEEEEEecCCCC--c-----------hHHHHHHHHHHHCC
Confidence 3668999999988764221 11 13 44555554444678999888742210 1 14566677777777
Q ss_pred C
Q 031970 94 A 94 (150)
Q Consensus 94 ~ 94 (150)
.
T Consensus 109 ~ 109 (137)
T 2fz5_A 109 A 109 (137)
T ss_dssp C
T ss_pred C
Confidence 6
No 246
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=43.75 E-value=22 Score=23.39 Aligned_cols=65 Identities=17% Similarity=0.105 Sum_probs=40.2
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCC
Q 031970 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 94 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 94 (150)
-+..||++|++...-...-.-.+ ..|+..+.....++|++++.+ -.... . -....+..++...|+
T Consensus 81 ~l~~aD~iI~~sP~y~~~~p~~l-K~~iD~~~~~l~gK~~~~~~~-G~~~~-~-----------~~~~~l~~~l~~~G~ 145 (191)
T 1t0i_A 81 IVNALDIIVFVTPQYNWGYPAAL-KNAIDRLYHEWHGKPALVVSY-GGHGG-S-----------KCNDQLQEVLHGLKM 145 (191)
T ss_dssp HHHTCSEEEEEEECBTTBCCHHH-HHHHHTCSTTTTTCEEEEEEE-ETTTT-H-----------HHHHHHHHHHHHTTC
T ss_pred HHHhCCEEEEEeceECCCCCHHH-HHHHHHHHhhcCCCEEEEEEe-CCcch-h-----------hHHHHHHHHHHHCCC
Confidence 46789999999998874332233 566666544345788887765 21111 1 134566777777776
No 247
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=43.44 E-value=44 Score=23.54 Aligned_cols=48 Identities=19% Similarity=0.398 Sum_probs=29.2
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh----hCCCCCEE-EEeeCCCcc
Q 031970 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQH----YSPGVPVV-LVGTKLDLR 65 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~----~~~~~pii-lv~nK~D~~ 65 (150)
.+..+|.+|++...+. .+...+ ...++.+.+ ..++.+++ +|.|+.|..
T Consensus 173 ~l~~aD~viiv~~~~~-~s~~~~-~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 173 AIVASDYVMIPLQAEE-ESTNNI-QNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp HHHHCSEEEEEECGGG-CCHHHH-HHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred HHHHCCeEEEEecCcH-HHHHHH-HHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 4456899999988753 344443 333333332 23467755 889999854
No 248
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=42.87 E-value=60 Score=20.33 Aligned_cols=42 Identities=26% Similarity=0.414 Sum_probs=31.1
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEee
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~n 60 (150)
++-+..++|..+|.+.|+..+.+.+...++....+...+-||
T Consensus 81 gsgvm~i~f~gddlea~ekalkemirqarkfagtvtytl~gn 122 (170)
T 4hhu_A 81 GSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTYTLSGN 122 (170)
T ss_dssp TCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred CceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEEEeCC
Confidence 567888999999999999987777777777655444444444
No 249
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=42.35 E-value=7.8 Score=31.17 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=29.7
Q ss_pred ccccccccCCc-EEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970 11 RLRPLSYRGAD-VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 67 (150)
Q Consensus 11 ~l~~~~~~~ad-~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 67 (150)
.+...|+.... +++++.+.+.......+ ..+...+.. .+.+.|+|.||.|+...
T Consensus 175 ~li~~~l~~~~~iil~vvt~~~d~a~~~~-l~la~~v~~--~g~rtI~VlTK~Dlv~~ 229 (608)
T 3szr_A 175 TLIKKYIQRQETISLVVVPSNVDIATTEA-LSMAQEVDP--EGDRTIGILTKPDLVDK 229 (608)
T ss_dssp HHHHHHTTSSSCCEEEEEESSSCTTTCHH-HHHHHHHCS--SCCSEEEEEECGGGSSS
T ss_pred HHHHHHHhcCCCCceEEEeccchhccHHH-HHHHHHHhh--cCCceEEEecchhhcCc
Confidence 34455555544 44444443322222222 344444443 25799999999998754
No 250
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=41.69 E-value=44 Score=24.56 Aligned_cols=69 Identities=10% Similarity=0.035 Sum_probs=41.0
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 98 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 98 (150)
..|-.+++.|.+... ++ -..+..+.+.. -...++.||.|... ....+.......+. |+.
T Consensus 241 ~~de~llvLDa~t~~---~~-~~~~~~~~~~~--~it~iilTKlD~~a--------------~~G~~l~~~~~~~~-pi~ 299 (328)
T 3e70_C 241 KPNLVIFVGDALAGN---AI-VEQARQFNEAV--KIDGIILTKLDADA--------------RGGAALSISYVIDA-PIL 299 (328)
T ss_dssp CCSEEEEEEEGGGTT---HH-HHHHHHHHHHS--CCCEEEEECGGGCS--------------CCHHHHHHHHHHTC-CEE
T ss_pred cCCCCEEEEecHHHH---HH-HHHHHHHHHhc--CCCEEEEeCcCCcc--------------chhHHHHHHHHHCC-CEE
Confidence 368889999977653 22 23333443321 23477889998533 22345566677776 777
Q ss_pred EeccCCCCCHHH
Q 031970 99 ECSSKTQQNVKA 110 (150)
Q Consensus 99 ~~Sa~~~~~i~~ 110 (150)
.++ +|+++++
T Consensus 300 ~i~--~Ge~v~d 309 (328)
T 3e70_C 300 FVG--VGQGYDD 309 (328)
T ss_dssp EEE--CSSSTTC
T ss_pred EEe--CCCCccc
Confidence 776 6666544
No 251
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_H
Probab=41.51 E-value=56 Score=22.20 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=35.7
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970 22 VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 66 (150)
Q Consensus 22 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 66 (150)
++++-+..-...+|+.++..+..++.+..++..+++++...=++.
T Consensus 57 AivIfVP~p~lk~f~KIq~rLvrELEKKfsgkhVvfiAqRrIlpk 101 (190)
T 3u5c_H 57 ALAIFVPVPSLAGFHKVQTKLTRELEKKFQDRHVIFLAERRILPK 101 (190)
T ss_dssp EEEEEECSSSHHHHHHHTHHHHHHHHHTTCSEEEEEEECCCCCCC
T ss_pred EEEEEecHHHHHHHHHHHHHHHHHHHhccCCCEEEEEecceEcCC
Confidence 555555777788999997788999999988999999988765443
No 252
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=40.61 E-value=15 Score=24.37 Aligned_cols=67 Identities=13% Similarity=0.056 Sum_probs=40.8
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh----CCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHH
Q 031970 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHY----SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 91 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~----~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 91 (150)
.+..+|++|+++..-...-.-.+ ..|+..+... ..++|+.++++--.-.... .....+..++..
T Consensus 69 ~l~~aD~ii~~sP~y~~~~p~~l-K~~iD~~~~~~~~~l~gK~~~~~~t~gg~~g~~-----------~~~~~l~~~l~~ 136 (193)
T 1rtt_A 69 QIRAADALLFATPEYNYSMAGVL-KNAIDWASRPPEQPFSGKPAAILGASAGRFGTA-----------RAQYHLRQTLVF 136 (193)
T ss_dssp HHHHCSEEEEECCEETTEECHHH-HHHHHHHTCSSSCTTTTCEEEEEEECSSTTTTH-----------HHHHHHHHHHHH
T ss_pred HHHhCCEEEEEccccccCcCHHH-HHHHHHhccccCcccCCCeEEEEEeCCCCCccH-----------HHHHHHHHHHHH
Confidence 46689999999887764322223 5677666542 3578998888753211111 134566677776
Q ss_pred cCC
Q 031970 92 IGA 94 (150)
Q Consensus 92 ~~~ 94 (150)
.|+
T Consensus 137 ~g~ 139 (193)
T 1rtt_A 137 LDV 139 (193)
T ss_dssp HTC
T ss_pred cCC
Confidence 665
No 253
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=40.61 E-value=37 Score=21.96 Aligned_cols=67 Identities=15% Similarity=-0.009 Sum_probs=39.6
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh-hCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCC
Q 031970 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQH-YSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 94 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 94 (150)
.+..+|++|++...-+..-.-.+ ..|+..+.. ...++|+.++++--.-.... .....+...+...++
T Consensus 60 ~i~~aD~ii~~tP~y~~~~p~~l-k~~lD~l~~~~~~gK~~~~~~~sgg~~g~~-----------~a~~~l~~~l~~~g~ 127 (174)
T 3gfs_A 60 RVTKADAIVLLSPEYHSGMSGAL-KNALDFLSSEQFKYKPVALLAVAGGGDGGI-----------NALNNMRTVMRGVYA 127 (174)
T ss_dssp HHHHCSSEEEEEECSSSSCCHHH-HHHHHTCCHHHHTTCEEEEEEECCSTTCSH-----------HHHHHHHHHHHHTTC
T ss_pred HHHHCCEEEEEcCCcCCCCCHHH-HHHHHHhCHhhhCCCcEEEEEECCCChhHH-----------HHHHHHHHHHHHcCC
Confidence 46689999999988864332222 455544432 22478998887532211111 134567777777786
No 254
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=40.33 E-value=43 Score=24.22 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=29.8
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEE
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVL 57 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piil 57 (150)
++|+++++-....+.+.+.+ ..+++.+.... +.|+++
T Consensus 99 Gadavlv~~P~y~~~~~~~l-~~~f~~va~a~-~lPiil 135 (300)
T 3eb2_A 99 GADGILAILEAYFPLKDAQI-ESYFRAIADAV-EIPVVI 135 (300)
T ss_dssp TCSEEEEEECCSSCCCHHHH-HHHHHHHHHHC-SSCEEE
T ss_pred CCCEEEEcCCCCCCCCHHHH-HHHHHHHHHHC-CCCEEE
Confidence 79999999888887788887 78888888765 478764
No 255
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=39.82 E-value=61 Score=24.83 Aligned_cols=61 Identities=20% Similarity=0.136 Sum_probs=35.2
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 97 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 97 (150)
.++.+++|.|.+... +. -.....+.. ..+ .-+|.||.|.... ...+..+....+. |+
T Consensus 210 ~pd~vlLVvDa~tgq---~a-v~~a~~f~~---~l~i~GVIlTKlD~~~~--------------~g~alsi~~~~g~-PI 267 (425)
T 2ffh_A 210 GPDEVLLVLDAMTGQ---EA-LSVARAFDE---KVGVTGLVLTKLDGDAR--------------GGAALSARHVTGK-PI 267 (425)
T ss_dssp CCSEEEEEEEGGGTT---HH-HHHHHHHHH---HTCCCEEEEESGGGCSS--------------CHHHHHHHHHHCC-CE
T ss_pred CCceEEEEEeccchH---HH-HHHHHHHHh---cCCceEEEEeCcCCccc--------------HHHHHHHHHHHCC-CE
Confidence 578899999987542 22 122333332 233 4578899985432 2344456666776 66
Q ss_pred EEec
Q 031970 98 IECS 101 (150)
Q Consensus 98 ~~~S 101 (150)
..+.
T Consensus 268 ~flg 271 (425)
T 2ffh_A 268 YFAG 271 (425)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5554
No 256
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=39.28 E-value=38 Score=24.59 Aligned_cols=38 Identities=13% Similarity=0.291 Sum_probs=30.0
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEE
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLV 58 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv 58 (150)
++|+++++-....+.+.+.+ ..+++.+.... +.|+++=
T Consensus 110 Gadavlv~~P~y~~~s~~~l-~~~f~~va~a~-~lPiilY 147 (304)
T 3l21_A 110 GAHGLLVVTPYYSKPPQRGL-QAHFTAVADAT-ELPMLLY 147 (304)
T ss_dssp TCSEEEEECCCSSCCCHHHH-HHHHHHHHTSC-SSCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHH-HHHHHHHHHhc-CCCEEEE
Confidence 79999999888777787777 77888887765 6888754
No 257
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=39.11 E-value=39 Score=24.48 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=30.2
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEE
Q 031970 18 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLV 58 (150)
Q Consensus 18 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv 58 (150)
.++|+++++-....+.+-+.+ ..+++.+.... +.|+++=
T Consensus 102 ~Gadavlv~~P~y~~~s~~~l-~~~f~~va~a~-~lPiilY 140 (301)
T 3m5v_A 102 HGADGILSVAPYYNKPTQQGL-YEHYKAIAQSV-DIPVLLY 140 (301)
T ss_dssp TTCSEEEEECCCSSCCCHHHH-HHHHHHHHHHC-SSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHH-HHHHHHHHHhC-CCCEEEE
Confidence 379999999888777777777 77888887765 6888743
No 258
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=38.54 E-value=41 Score=24.38 Aligned_cols=37 Identities=22% Similarity=0.386 Sum_probs=29.5
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEE
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVL 57 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piil 57 (150)
++|+++++-....+.+.+.+ ..++..+.... +.|+++
T Consensus 107 Gadavlv~~P~y~~~s~~~l-~~~f~~va~a~-~lPiil 143 (301)
T 1xky_A 107 GVDAVMLVAPYYNKPSQEGM-YQHFKAIAEST-PLPVML 143 (301)
T ss_dssp TCSEEEEECCCSSCCCHHHH-HHHHHHHHHTC-SSCEEE
T ss_pred CCCEEEEcCCCCCCCCHHHH-HHHHHHHHHhc-CCCEEE
Confidence 79999999888877787887 77888887754 688774
No 259
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=38.44 E-value=40 Score=24.63 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=29.9
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEE
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLV 58 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv 58 (150)
++|+++++-....+.+.+.+ ..+++.+.... +.|+++=
T Consensus 118 Gadavlv~~P~y~~~s~~~l-~~~f~~va~a~-~lPiilY 155 (314)
T 3qze_A 118 GADACLLVTPYYNKPTQEGM-YQHFRHIAEAV-AIPQILY 155 (314)
T ss_dssp TCSEEEEECCCSSCCCHHHH-HHHHHHHHHHS-CSCEEEE
T ss_pred CCCEEEEcCCCCCCCCHHHH-HHHHHHHHHhc-CCCEEEE
Confidence 79999999887777777777 78888887765 6888754
No 260
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=38.38 E-value=41 Score=24.16 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=29.7
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEE
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLV 58 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv 58 (150)
++|+++++-....+.+.+.+ ..+++.+.... +.|+++=
T Consensus 96 Gadavlv~~P~y~~~~~~~l-~~~f~~ia~a~-~lPiilY 133 (291)
T 3tak_A 96 GADAALLVTPYYNKPTQEGL-YQHYKAIAEAV-ELPLILY 133 (291)
T ss_dssp TCSEEEEECCCSSCCCHHHH-HHHHHHHHHHC-CSCEEEE
T ss_pred CCCEEEEcCCCCCCCCHHHH-HHHHHHHHHhc-CCCEEEE
Confidence 79999999887777777777 78888887765 6888753
No 261
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=38.25 E-value=80 Score=23.00 Aligned_cols=61 Identities=13% Similarity=0.107 Sum_probs=35.0
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 97 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 97 (150)
.+|.+++|.|.+.. .+.+ ... ..+. +..++ =+|.||.|.... ...+..+...++. |+
T Consensus 227 ~~d~vllVl~a~~~--~~~l-~~~-~~~~---~~~~i~GvVltk~d~~~~--------------~g~~~~~~~~~~~-Pi 284 (320)
T 1zu4_A 227 APHEVLLVIDATTG--QNGV-IQA-EEFS---KVADVSGIILTKMDSTSK--------------GGIGLAIKELLNI-PI 284 (320)
T ss_dssp CCSEEEEEEEGGGT--HHHH-HHH-HHHT---TTSCCCEEEEECGGGCSC--------------TTHHHHHHHHHCC-CE
T ss_pred CCceEEEEEECCCc--HHHH-HHH-HHHh---hcCCCcEEEEeCCCCCCc--------------hhHHHHHHHHHCc-CE
Confidence 47899999998843 2222 222 2222 23444 378899985432 1345566667776 66
Q ss_pred EEec
Q 031970 98 IECS 101 (150)
Q Consensus 98 ~~~S 101 (150)
..+.
T Consensus 285 ~~i~ 288 (320)
T 1zu4_A 285 KMIG 288 (320)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5554
No 262
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=37.97 E-value=41 Score=24.60 Aligned_cols=38 Identities=13% Similarity=0.347 Sum_probs=30.0
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEE
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLV 58 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv 58 (150)
++|+++++-....+.+-+.+ ..+++.+.... +.|+++=
T Consensus 117 Gadavlv~~P~y~~~~~~~l-~~~f~~va~a~-~lPiilY 154 (315)
T 3si9_A 117 GADAVLVVTPYYNRPNQRGL-YTHFSSIAKAI-SIPIIIY 154 (315)
T ss_dssp TCSEEEEECCCSSCCCHHHH-HHHHHHHHHHC-SSCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHH-HHHHHHHHHcC-CCCEEEE
Confidence 79999999888777777777 78888888765 6887754
No 263
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=37.82 E-value=59 Score=24.92 Aligned_cols=58 Identities=10% Similarity=0.099 Sum_probs=33.0
Q ss_pred CCCCcccccc-ccc-----ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCCccc
Q 031970 2 NVIGQEDYNR-LRP-----LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLDLRE 66 (150)
Q Consensus 2 Dt~G~e~~~~-l~~-----~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilv~nK~D~~~ 66 (150)
||||...+.. +.. ..+..++.+++|.|++...... .....+.. ..|+ -+|.||.|...
T Consensus 190 DTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~----~~~~~f~~---~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 190 DTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAA----NTAKAFNE---ALPLTGVVLTKVDGDA 254 (433)
T ss_dssp ECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHH----HHHHHHHH---HSCCCCEEEECTTSSS
T ss_pred ECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHH----HHHHHHhc---cCCCeEEEEecCCCCc
Confidence 8998654321 111 1234688999999998653322 22233332 2453 47899999643
No 264
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=37.65 E-value=27 Score=25.23 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=29.9
Q ss_pred CCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhCC--CCCEEE
Q 031970 19 GADVFVLAFSLVSR-ASYENVLKKWIPELQHYSP--GVPVVL 57 (150)
Q Consensus 19 ~ad~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~--~~piil 57 (150)
++|+++++-....+ .+.+.+ ..++..+....+ +.|+++
T Consensus 98 Gadavlv~~P~y~~~~s~~~l-~~~f~~va~a~p~~~lPiil 138 (294)
T 3b4u_A 98 GARNILLAPPSYFKNVSDDGL-FAWFSAVFSKIGKDARDILV 138 (294)
T ss_dssp TCSEEEECCCCSSCSCCHHHH-HHHHHHHHHHHCTTCCCEEE
T ss_pred CCCEEEEcCCcCCCCCCHHHH-HHHHHHHHHhcCCCCCcEEE
Confidence 79999999887777 677777 788888887654 688774
No 265
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=37.61 E-value=42 Score=24.07 Aligned_cols=37 Identities=22% Similarity=0.395 Sum_probs=29.4
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEE
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVL 57 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piil 57 (150)
++|+++++-....+.+.+.+ ..+++.+.... +.|+++
T Consensus 95 Gadavlv~~P~y~~~s~~~l-~~~f~~ia~a~-~lPiil 131 (289)
T 2yxg_A 95 GADAVLSITPYYNKPTQEGL-RKHFGKVAESI-NLPIVL 131 (289)
T ss_dssp TCSEEEEECCCSSCCCHHHH-HHHHHHHHHHC-SSCEEE
T ss_pred CCCEEEECCCCCCCCCHHHH-HHHHHHHHHhc-CCCEEE
Confidence 79999999888877788887 77888887754 578774
No 266
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=37.60 E-value=43 Score=24.10 Aligned_cols=38 Identities=11% Similarity=0.291 Sum_probs=29.7
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEE
Q 031970 18 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVL 57 (150)
Q Consensus 18 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piil 57 (150)
.++|+++++-....+.+.+.+ ..++..+.... +.|+++
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l-~~~f~~va~a~-~lPiil 131 (294)
T 2ehh_A 94 VGADGALVVVPYYNKPTQRGL-YEHFKTVAQEV-DIPIII 131 (294)
T ss_dssp TTCSEEEEECCCSSCCCHHHH-HHHHHHHHHHC-CSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHH-HHHHHHHHHhc-CCCEEE
Confidence 379999999888877788887 77888887754 588774
No 267
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=37.35 E-value=37 Score=24.94 Aligned_cols=38 Identities=13% Similarity=-0.048 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970 82 TAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
.+++.+.++..++ +++.++..+...+..+...+...+.
T Consensus 93 peelie~A~~~~I-PVL~T~~~ts~~~~~l~~~l~~~~~ 130 (314)
T 1ko7_A 93 PEELIEAAKEHET-PLITSKIATTQLMSRLTTFLEHELA 130 (314)
T ss_dssp CHHHHHHHHHTTC-CEEECCSCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHCCC-eEEEECCchhHHHHHHHHHHHHhhc
Confidence 3667788888997 9999998888888888777766543
No 268
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=37.30 E-value=44 Score=24.27 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=29.3
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEE
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVL 57 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piil 57 (150)
++|+++++-....+.+.+.+ ..+++.+.... +.|+++
T Consensus 107 Gadavlv~~P~y~~~s~~~l-~~~f~~va~a~-~lPiil 143 (306)
T 1o5k_A 107 GANGVLVVTPYYNKPTQEGL-YQHYKYISERT-DLGIVV 143 (306)
T ss_dssp TCSEEEEECCCSSCCCHHHH-HHHHHHHHTTC-SSCEEE
T ss_pred CCCEEEECCCCCCCCCHHHH-HHHHHHHHHhC-CCCEEE
Confidence 79999999888877787887 78888887654 578774
No 269
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=37.00 E-value=54 Score=21.60 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=25.0
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEe
Q 031970 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVG 59 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~ 59 (150)
.++.||++|.++|...+.+-... ++ .... ..++|++++.
T Consensus 78 ~i~~aD~vVA~ldg~~~D~GTa~--Ei--GyA~-algKPVv~l~ 116 (167)
T 1s2d_A 78 GISNATCGVFLYDMDQLDDGSAF--XI--GFMR-AMHKPVILVP 116 (167)
T ss_dssp HHHHCSEEEEEEESSSCCHHHHH--HH--HHHH-HTTCCEEEEE
T ss_pred HHHhCCEEEEECCCCCCCCCcee--eh--hhHh-hCCCeEEEEE
Confidence 46789999999997766554432 11 1111 1378999884
No 270
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=36.99 E-value=45 Score=24.08 Aligned_cols=38 Identities=16% Similarity=0.350 Sum_probs=29.8
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEE
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLV 58 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv 58 (150)
++|+++++-....+.+.+.+ ..+++.+.... +.|+++=
T Consensus 102 Gadavlv~~P~y~~~~~~~l-~~~f~~va~a~-~lPiilY 139 (297)
T 3flu_A 102 GADYTLSVVPYYNKPSQEGI-YQHFKTIAEAT-SIPMIIY 139 (297)
T ss_dssp TCSEEEEECCCSSCCCHHHH-HHHHHHHHHHC-CSCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHH-HHHHHHHHHhC-CCCEEEE
Confidence 79999999887777777776 77888887765 6888754
No 271
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=36.82 E-value=44 Score=24.01 Aligned_cols=38 Identities=16% Similarity=0.364 Sum_probs=29.8
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEE
Q 031970 18 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVL 57 (150)
Q Consensus 18 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piil 57 (150)
.++|+++++-....+.+.+.+ ..++..+.... +.|+++
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l-~~~f~~ia~a~-~lPiil 131 (292)
T 2vc6_A 94 AGADGVLIVSPYYNKPTQEGI-YQHFKAIDAAS-TIPIIV 131 (292)
T ss_dssp TTCSEEEEECCCSSCCCHHHH-HHHHHHHHHHC-SSCEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHH-HHHHHHHHHhC-CCCEEE
Confidence 379999999888877787877 77788887754 588774
No 272
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=36.34 E-value=36 Score=22.75 Aligned_cols=67 Identities=16% Similarity=0.107 Sum_probs=39.4
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh----hCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHH
Q 031970 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQH----YSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 91 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~----~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 91 (150)
-+..||++|++....+..---.+ +.|+..+.. ...++|+.++++--.-.... .....++.++..
T Consensus 69 ~i~~AD~iv~~sP~y~~~~~~~l-K~~iD~~~~~~~~~~~gK~~~~~~~s~g~~gg~-----------~a~~~Lr~~l~~ 136 (193)
T 3svl_A 69 QIRQADGVVIVTPEYNYSVPGGL-KNAIDWLSRLPDQPLAGKPVLIQTSSMGVIGGA-----------RCQYHLRQILVF 136 (193)
T ss_dssp HHHHSSEEEEEECCBTTBCCHHH-HHHHHHHHTSTTCTTTTCEEEEEEECSSTTTTH-----------HHHHHHHHHHHH
T ss_pred HHHHCCEEEEEecccCCCCCHHH-HHHHHHHhhcCccccCCCeEEEEEeCCCCcchH-----------HHHHHHHHHHHH
Confidence 46689999999888764322222 445554443 23578998887632211111 134566777777
Q ss_pred cCC
Q 031970 92 IGA 94 (150)
Q Consensus 92 ~~~ 94 (150)
++.
T Consensus 137 lg~ 139 (193)
T 3svl_A 137 LDA 139 (193)
T ss_dssp TTC
T ss_pred CCC
Confidence 776
No 273
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=36.27 E-value=57 Score=19.97 Aligned_cols=42 Identities=12% Similarity=0.164 Sum_probs=25.2
Q ss_pred ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeC
Q 031970 15 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTK 61 (150)
Q Consensus 15 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK 61 (150)
.-+++++++|++.......+- -+ ..+|.... .++|++.|---
T Consensus 34 ~~I~~~~~vIvL~G~~t~~s~-wv----~~EI~~A~~~gkpIigV~~~ 76 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTRRD-EI----LGAVDLARKSSKPIITVRPY 76 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTSHH-HH----HHHHHHHTTTTCCEEEECCS
T ss_pred CccccCCEEEEEeCCCcCCCh-HH----HHHHHHHHHcCCCEEEEEcC
Confidence 457789999998887654322 11 11333322 47998887543
No 274
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=36.14 E-value=1.1e+02 Score=21.37 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=27.6
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCE-EEEeeCCC
Q 031970 18 RGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPV-VLVGTKLD 63 (150)
Q Consensus 18 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~pi-ilv~nK~D 63 (150)
..+|.+|++.... ..+...+ ...++.+.... .+.++ -+|.|+.+
T Consensus 142 ~~aD~viiv~~~~-~~s~~~~-~~~~~~l~~~~~~~~~~~~gvv~N~~~ 188 (289)
T 2afh_E 142 NKAQEIYIVCSGE-MMAMYAA-NNISKGIVKYANSGSVRLGGLICNSRN 188 (289)
T ss_dssp TCCCEEEEEECSS-HHHHHHH-HHHHHHHHHHHTTSCCEEEEEEEECCC
T ss_pred hhCCEEEEEecCC-HHHHHHH-HHHHHHHHHHHhcCCCceEEEEEecCC
Confidence 4689999988864 4555554 45555554432 24564 47889875
No 275
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=36.07 E-value=38 Score=22.24 Aligned_cols=45 Identities=9% Similarity=-0.023 Sum_probs=31.1
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh----hCCCCCEEEEeeC
Q 031970 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQH----YSPGVPVVLVGTK 61 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~----~~~~~piilv~nK 61 (150)
-+.++|++|+........-...+ ..|+..+.. ...+.|+.++++-
T Consensus 49 ~l~~aD~ii~gsP~y~g~~~~~l-k~fld~~~~~~~~~l~gk~~~~~~t~ 97 (188)
T 2ark_A 49 DVLWADGLAVGSPTNMGLVSWKM-KRFFDDVLGDLWGEIDGKIACAFSSS 97 (188)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHH-HHHHHHTGGGTTTSCTTCEEEEEEEE
T ss_pred HHHhCCEEEEEeCccCCcCCHHH-HHHHHHHhhhhHHHhCCCeEEEEEEC
Confidence 45679999999988864433344 667776654 2357888888874
No 276
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=36.01 E-value=1e+02 Score=21.08 Aligned_cols=44 Identities=14% Similarity=0.092 Sum_probs=28.7
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCE-EEEeeCCC
Q 031970 18 RGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPV-VLVGTKLD 63 (150)
Q Consensus 18 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~pi-ilv~nK~D 63 (150)
..+|.+|++...+ ..+...+ ...++.+.... .+.++ -+|.|+.+
T Consensus 139 ~~aD~viiv~~~~-~~s~~~~-~~~~~~l~~~~~~~~~~~~gvv~N~~~ 185 (269)
T 1cp2_A 139 GKAQEIYIVASGE-MMALYAA-NNISKGIQKYAKSGGVRLGGIICNSRK 185 (269)
T ss_dssp TSCCEEEEEECSS-HHHHHHH-HHHHHHHHHHBTTBBCEEEEEEEECCS
T ss_pred hhCCEEEEeecCc-hhhHHHH-HHHHHHHHHHHhcCCCcEEEEEeecCC
Confidence 3689999998875 4556555 55555555432 24565 58889886
No 277
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=35.96 E-value=47 Score=24.06 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=29.3
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEE
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVL 57 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piil 57 (150)
++|+++++-....+.+.+.+ ..++..+.... +.|+++
T Consensus 111 Gadavlv~~P~y~~~~~~~l-~~~f~~ia~a~-~lPiil 147 (304)
T 3cpr_A 111 GADGLLVVTPYYSKPSQEGL-LAHFGAIAAAT-EVPICL 147 (304)
T ss_dssp TCSEEEEECCCSSCCCHHHH-HHHHHHHHHHC-CSCEEE
T ss_pred CCCEEEECCCCCCCCCHHHH-HHHHHHHHHhc-CCCEEE
Confidence 79999999888877777776 77888887764 588774
No 278
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=35.86 E-value=47 Score=23.85 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=29.1
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEE
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVL 57 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piil 57 (150)
++|+++++-....+.+.+.+ ..+++.+.... +.|+++
T Consensus 96 Gadavlv~~P~y~~~s~~~l-~~~f~~ia~a~-~lPiil 132 (292)
T 2ojp_A 96 GIVGCLTVTPYYNRPSQEGL-YQHFKAIAEHT-DLPQIL 132 (292)
T ss_dssp SCSEEEEECCCSSCCCHHHH-HHHHHHHHTTC-SSCEEE
T ss_pred CCCEEEECCCCCCCCCHHHH-HHHHHHHHHhc-CCCEEE
Confidence 79999999888877787887 77888887654 578774
No 279
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=35.76 E-value=50 Score=23.78 Aligned_cols=38 Identities=18% Similarity=0.030 Sum_probs=29.7
Q ss_pred cCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhCCCCCEEE
Q 031970 18 RGADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVL 57 (150)
Q Consensus 18 ~~ad~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~piil 57 (150)
.++|+++++-....+ .+.+.+ ..+++.+.... +.|+++
T Consensus 90 ~Gadavlv~~P~y~~~~s~~~l-~~~f~~va~a~-~lPiil 128 (293)
T 1w3i_A 90 FDIVGIASYAPYYYPRMSEKHL-VKYFKTLCEVS-PHPVYL 128 (293)
T ss_dssp SCCSEEEEECCCSCSSCCHHHH-HHHHHHHHHHC-SSCEEE
T ss_pred cCCCEEEEcCCCCCCCCCHHHH-HHHHHHHHhhC-CCCEEE
Confidence 379999999888877 777877 77888887764 578774
No 280
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=35.17 E-value=17 Score=25.75 Aligned_cols=62 Identities=11% Similarity=0.150 Sum_probs=35.1
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHH---HH------------HHH---HHHhhh--CCC-CCEEEEee
Q 031970 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV---LK------------KWI---PELQHY--SPG-VPVVLVGT 60 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~---~~------------~~~---~~i~~~--~~~-~piilv~n 60 (150)
|||+.- .......+..+|.+|++...+. .+...+ ++ +.+ +.+... .++ .++.+|.|
T Consensus 110 D~p~~~--~~~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~vV~N 186 (286)
T 2xj4_A 110 DTPGGD--SAITRMAHGRADLVVTPMNDSF-VDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMDWVVLRN 186 (286)
T ss_dssp ECCSSC--CHHHHHHHHTCSEEEEEEESSH-HHHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCEEEEEEE
T ss_pred cCCCCc--cHHHHHHHHHCCEEEEEEcCCc-cHHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCccccEEEEEe
Confidence 666543 3334556788999999998763 222111 00 002 222222 345 67889999
Q ss_pred CCCccc
Q 031970 61 KLDLRE 66 (150)
Q Consensus 61 K~D~~~ 66 (150)
+.+...
T Consensus 187 ~~~~~~ 192 (286)
T 2xj4_A 187 RLATTE 192 (286)
T ss_dssp CCTTCC
T ss_pred eecCCC
Confidence 998543
No 281
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=35.16 E-value=49 Score=24.53 Aligned_cols=37 Identities=24% Similarity=0.361 Sum_probs=29.3
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEE
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVL 57 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piil 57 (150)
++|+++++-....+.+.+.+ ..++..+.... +.|+++
T Consensus 126 Gadavlv~~P~Y~~~s~~~l-~~~f~~VA~a~-~lPiil 162 (343)
T 2v9d_A 126 GADGIVVINPYYWKVSEANL-IRYFEQVADSV-TLPVML 162 (343)
T ss_dssp TCSEEEEECCSSSCCCHHHH-HHHHHHHHHTC-SSCEEE
T ss_pred CCCEEEECCCCCCCCCHHHH-HHHHHHHHHhc-CCCEEE
Confidence 89999999888877787887 77888887754 588774
No 282
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=34.78 E-value=37 Score=24.43 Aligned_cols=38 Identities=24% Similarity=0.367 Sum_probs=29.3
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEE
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLV 58 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv 58 (150)
++|+++++-....+.+.+.+ ..+++.+.... +.|+++=
T Consensus 97 Gadavlv~~P~y~~~~~~~l-~~~f~~ia~a~-~lPiilY 134 (292)
T 3daq_A 97 GADAIMLITPYYNKTNQRGL-VKHFEAIADAV-KLPVVLY 134 (292)
T ss_dssp TCSEEEEECCCSSCCCHHHH-HHHHHHHHHHH-CSCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHH-HHHHHHHHHhC-CCCEEEE
Confidence 79999999887777777776 67777887654 6888743
No 283
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=34.51 E-value=78 Score=20.52 Aligned_cols=42 Identities=19% Similarity=0.329 Sum_probs=28.8
Q ss_pred cCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhhCCCCCEEEEe
Q 031970 18 RGADVFVLAFSLVSR----ASYENVLKKWIPELQHYSPGVPVVLVG 59 (150)
Q Consensus 18 ~~ad~~i~v~d~~~~----~s~~~~~~~~~~~i~~~~~~~piilv~ 59 (150)
...|.+++.+=.+|. +.+..-+..++..++...++.+++++.
T Consensus 73 ~~pd~Vvi~~G~ND~~~~~~~~~~~l~~ii~~l~~~~p~~~ii~~~ 118 (200)
T 4h08_A 73 TKFDVIHFNNGLHGFDYTEEEYDKSFPKLIKIIRKYAPKAKLIWAN 118 (200)
T ss_dssp SCCSEEEECCCSSCTTSCHHHHHHHHHHHHHHHHHHCTTCEEEEEC
T ss_pred CCCCeEEEEeeeCCCCCCHHHHHHHHHHHHHHHhhhCCCccEEEec
Confidence 367888888887763 344443467777777777777777664
No 284
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=33.42 E-value=71 Score=20.77 Aligned_cols=44 Identities=14% Similarity=0.019 Sum_probs=29.7
Q ss_pred HHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEe
Q 031970 40 KKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC 100 (150)
Q Consensus 40 ~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 100 (150)
+...+.+.+. ..|+|++|....... ..+++..+++..++ |++.+
T Consensus 25 ~~aa~~L~~A--krPvil~G~g~~~~~--------------a~~~l~~lae~~~i-PV~~t 68 (170)
T 3cf4_G 25 EMAAKIISKA--KRPLLMVGTLALDPE--------------LLDRVVKISKAANI-PIAAT 68 (170)
T ss_dssp HHHHHHHHHC--SSEEEEECSTTCCHH--------------HHHHHHHHHHHHTC-CEEEC
T ss_pred HHHHHHHHcC--CCCEEEECCCccchh--------------HHHHHHHHHHHhCC-CEEEC
Confidence 3444455443 589999998764322 44678899999998 77643
No 285
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=33.38 E-value=43 Score=24.17 Aligned_cols=37 Identities=19% Similarity=0.350 Sum_probs=29.2
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEE
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVL 57 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piil 57 (150)
++|+++++-....+.+.+.+ ..++..+.... +.|+++
T Consensus 95 Gadavlv~~P~y~~~s~~~l-~~~f~~va~a~-~lPiil 131 (297)
T 2rfg_A 95 GADAVLCVAGYYNRPSQEGL-YQHFKMVHDAI-DIPIIV 131 (297)
T ss_dssp TCSEEEECCCTTTCCCHHHH-HHHHHHHHHHC-SSCEEE
T ss_pred CCCEEEEcCCCCCCCCHHHH-HHHHHHHHHhc-CCCEEE
Confidence 79999999888877787877 77888887754 578774
No 286
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=33.37 E-value=38 Score=22.72 Aligned_cols=44 Identities=18% Similarity=0.266 Sum_probs=30.3
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh-hCCCCCEEEEee
Q 031970 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQH-YSPGVPVVLVGT 60 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~-~~~~~piilv~n 60 (150)
.+..||++|++...-+..-.-.+ +.|+..+.. ...++|+.++++
T Consensus 82 ~i~~AD~ivi~sP~Y~~~~~~~l-K~~iD~~~~~~l~gK~~~~v~t 126 (191)
T 3k1y_A 82 ALSASDGLVVATPVFKASYTGLF-KMFFDILDTDALTGMPTIIAAT 126 (191)
T ss_dssp HHHHCSEEEEEEECBTTBSCHHH-HHHHHHSCTTTTTTCEEEEEEE
T ss_pred HHHHCCEEEEEcCccCCcCcHHH-HHHHHHhhhhhcCCCEEEEEEe
Confidence 46689999999988874432232 566666543 335789998887
No 287
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=33.02 E-value=35 Score=22.73 Aligned_cols=66 Identities=14% Similarity=-0.019 Sum_probs=41.1
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh-----------hCCCCCEEEEeeCCCcccccccccCCCCCCccCHHH
Q 031970 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQH-----------YSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ 84 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~-----------~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~ 84 (150)
-+..||++|++...-+..---.+ +.|+..+.. ...++|++++++--.... . .....
T Consensus 64 ~i~~AD~iV~~sP~y~~~~p~~l-K~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~g~-~-----------~~~~~ 130 (192)
T 3fvw_A 64 EVQEADAIWIFSPVYNYAIPGPV-KNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGASP-E-----------EVFED 130 (192)
T ss_dssp HHHHCSEEEEECCCBTTBCCHHH-HHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC---------------CCSHH
T ss_pred HHHhCCEEEEECcccccCCCHHH-HHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCcch-h-----------HHHHH
Confidence 46789999999888774322222 667666653 124788888876543111 1 13366
Q ss_pred HHHHHHHcCC
Q 031970 85 GEELRKQIGA 94 (150)
Q Consensus 85 ~~~~~~~~~~ 94 (150)
+..++...|+
T Consensus 131 l~~~l~~~G~ 140 (192)
T 3fvw_A 131 YRSLLPFIRM 140 (192)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHcCC
Confidence 7777778776
No 288
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=32.94 E-value=64 Score=21.03 Aligned_cols=41 Identities=17% Similarity=0.057 Sum_probs=27.0
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCC
Q 031970 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 63 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 63 (150)
.++.||++|..++.-|.-+--++ -|... -++|++++.+..+
T Consensus 74 ~i~~aD~vva~~~~~d~Gt~~Ei--GyA~a-----lgKPVi~l~~~~~ 114 (165)
T 2khz_A 74 WLQQADVVVAEVTQPSLGVGYEL--GRAVA-----LGKPILCLFRPQS 114 (165)
T ss_dssp HHHHCSEEEEECSSCCHHHHHHH--HHHHH-----TCSSEEEEECTTT
T ss_pred HHHhCCEEEEECCCCCCCHHHHH--HHHHH-----CCCEEEEEEcCCC
Confidence 57789999999885555444443 23222 2789999876653
No 289
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=32.72 E-value=44 Score=24.39 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=28.5
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEE
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVL 57 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piil 57 (150)
++|+++++-....+.+.+.+ ..++..+.... +.|+++
T Consensus 106 Gadavlv~~P~y~~~s~~~l-~~~f~~va~a~-~lPiil 142 (314)
T 3d0c_A 106 GADCVMIHQPVHPYITDAGA-VEYYRNIIEAL-DAPSII 142 (314)
T ss_dssp TCSEEEECCCCCSCCCHHHH-HHHHHHHHHHS-SSCEEE
T ss_pred CCCEEEECCCCCCCCCHHHH-HHHHHHHHHhC-CCCEEE
Confidence 79999999888777777777 77888887754 477664
No 290
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=32.32 E-value=54 Score=21.49 Aligned_cols=41 Identities=10% Similarity=-0.013 Sum_probs=25.5
Q ss_pred ccccCCcEEEEEEe-----CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCC
Q 031970 15 LSYRGADVFVLAFS-----LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL 62 (150)
Q Consensus 15 ~~~~~ad~~i~v~d-----~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~ 62 (150)
..+++||++|.++| .-|+-+--++ -|.. . -++|++++.+..
T Consensus 63 ~~i~~aD~vVA~ldpf~g~~~D~GTafEi--GyA~--A---lgKPVi~l~~d~ 108 (161)
T 2f62_A 63 QMIKDCDAVIADLSPFRGHEPDCGTAFEV--GCAA--A---LNKMVLTFTSDR 108 (161)
T ss_dssp HHHHHCSEEEEECCCCSSSSCCHHHHHHH--HHHH--H---TTCEEEEECSCC
T ss_pred HHHHhCCEEEEEecCCCCCCCCCcHHHHH--HHHH--H---CCCEEEEEEcCc
Confidence 35678999999998 2344333333 2221 1 278999987653
No 291
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=31.68 E-value=80 Score=20.74 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=26.0
Q ss_pred cccCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhhCCCCCEEEEeeCCC
Q 031970 16 SYRGADVFVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLD 63 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~~~~piilv~nK~D 63 (150)
.++.||++|.++|...+. +--++ -|... .++|++++.+-.-
T Consensus 66 ~i~~aD~viA~ldg~~~D~Gt~~Ei--G~A~a-----~gkPVi~~~~D~R 108 (162)
T 3ehd_A 66 NVLASDLLVALLDGPTIDAGVASEI--GVAYA-----KGIPVVALYTDSR 108 (162)
T ss_dssp HHHTCSEEEEECCSSSCCHHHHHHH--HHHHH-----TTCCEEEECCCGG
T ss_pred HHHHCCEEEEECCCCCCCCCHHHHH--HHHHH-----CCCEEEEEEcCcc
Confidence 477999999999977443 33332 22211 3689988876543
No 292
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=31.57 E-value=46 Score=24.50 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=29.2
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEE
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVL 57 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piil 57 (150)
++|+++++-....+.+.+.+ ..+++.+.... +.|+++
T Consensus 129 Gadavlv~~P~Y~~~s~~~l-~~~f~~VA~a~-~lPiil 165 (332)
T 2r8w_A 129 GADALLLAPVSYTPLTQEEA-YHHFAAVAGAT-ALPLAI 165 (332)
T ss_dssp TCSEEEECCCCSSCCCHHHH-HHHHHHHHHHC-SSCEEE
T ss_pred CCCEEEECCCCCCCCCHHHH-HHHHHHHHHhc-CCCEEE
Confidence 79999999888877787887 77888887754 578774
No 293
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=31.50 E-value=44 Score=22.40 Aligned_cols=74 Identities=12% Similarity=0.162 Sum_probs=42.3
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh------------------hCCCCCEEEEeeCCC--cccccccccCCC
Q 031970 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQH------------------YSPGVPVVLVGTKLD--LREDKHYLADHP 75 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~------------------~~~~~piilv~nK~D--~~~~~~~~~~~~ 75 (150)
-+..||++|+.+..-+-.---.+ +.|+..+.. ...+++++++.+--. ...... .
T Consensus 84 ~l~~AD~iV~~~P~y~~~~pa~l-K~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g~~~~~~~~~-----~ 157 (212)
T 3r6w_A 84 ELFDSDLLVISTPMYNFSVPSGL-KAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGE-----N 157 (212)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHH-HHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECSSSCCSTTCT-----T
T ss_pred HHHhCCEEEEEcCcccccCCHHH-HHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecCCCCcCCCCC-----C
Confidence 36789999999998874433333 677777732 224677777776431 100000 0
Q ss_pred CCCccCHHHHHHHHHHcCCc
Q 031970 76 GLVPVTTAQGEELRKQIGAS 95 (150)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~ 95 (150)
.........+..++...|+.
T Consensus 158 ~~~~~~~~~l~~~l~~~G~~ 177 (212)
T 3r6w_A 158 QAMNHADPWLRTALGFIGID 177 (212)
T ss_dssp GGGCCSHHHHHHHHHHHTCC
T ss_pred CchhhhHHHHHHHHHHCCCc
Confidence 00122456677777888873
No 294
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=31.20 E-value=27 Score=23.26 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=29.0
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh-hCCCCCEEEEee
Q 031970 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQH-YSPGVPVVLVGT 60 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~-~~~~~piilv~n 60 (150)
.+..+|++|++...-+..-.-.+ ..|+..+.. ...++|+.++++
T Consensus 66 ~i~~aD~ii~~sP~y~~~~p~~l-K~~ld~l~~~~~~gK~~~~~~t 110 (197)
T 2vzf_A 66 ATCNADGLIVATPIYKASYTGLL-KAFLDILPQFALAGKAALPLAT 110 (197)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHH-HHHHTTSCTTTTTTCEEEEEEE
T ss_pred HHHHCCEEEEEeCccCCCCCHHH-HHHHHhccccccCCCEEEEEEE
Confidence 36689999999988874322222 555555432 225789999987
No 295
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=31.16 E-value=47 Score=21.73 Aligned_cols=68 Identities=10% Similarity=0.025 Sum_probs=38.5
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh-----hCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHH
Q 031970 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQH-----YSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 90 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~-----~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~ 90 (150)
-+.++|++|+........-.-.+ ..|+..+.. ...++|+.++++--....... -....+..++.
T Consensus 68 ~l~~aD~ii~gsP~y~~~~~~~l-k~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~----------~~~~~l~~~l~ 136 (200)
T 2a5l_A 68 DLKNCAGLALGSPTRFGNMASPL-KYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQE----------TTQLSMLLPLL 136 (200)
T ss_dssp HHHTCSEEEEEEECBTTBCCHHH-HHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHH----------HHHHHHHHHHH
T ss_pred HHHHCCEEEEEcChhccCccHHH-HHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHH----------HHHHHHHHHHH
Confidence 46689999999988764322222 455554432 235788888877432211100 13345666666
Q ss_pred HcCC
Q 031970 91 QIGA 94 (150)
Q Consensus 91 ~~~~ 94 (150)
..++
T Consensus 137 ~~g~ 140 (200)
T 2a5l_A 137 HHGM 140 (200)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 6775
No 296
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=30.91 E-value=51 Score=23.64 Aligned_cols=37 Identities=8% Similarity=-0.054 Sum_probs=28.9
Q ss_pred CCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhCCCCCEEE
Q 031970 19 GADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVL 57 (150)
Q Consensus 19 ~ad~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~piil 57 (150)
++|+++++-....+ .+.+.+ ..++..+.... +.|+++
T Consensus 91 Gadavlv~~P~y~~~~s~~~l-~~~f~~va~a~-~lPiil 128 (288)
T 2nuw_A 91 DILGVSSHSPYYFPRLPEKFL-AKYYEEIARIS-SHSLYI 128 (288)
T ss_dssp CCSEEEECCCCSSCSCCHHHH-HHHHHHHHHHC-CSCEEE
T ss_pred CCCEEEEcCCcCCCCCCHHHH-HHHHHHHHHhc-CCCEEE
Confidence 79999999888777 677777 77888887754 578774
No 297
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=30.88 E-value=88 Score=18.72 Aligned_cols=21 Identities=10% Similarity=0.333 Sum_probs=13.3
Q ss_pred HHHHHHhh--hCCCCCEEEEeeC
Q 031970 41 KWIPELQH--YSPGVPVVLVGTK 61 (150)
Q Consensus 41 ~~~~~i~~--~~~~~piilv~nK 61 (150)
.++..+++ ..++.|+|++...
T Consensus 68 ~~~~~lr~~~~~~~~pii~~s~~ 90 (144)
T 3kht_A 68 EVMSAVRKPGANQHTPIVILTDN 90 (144)
T ss_dssp HHHHHHHSSSTTTTCCEEEEETT
T ss_pred HHHHHHHhcccccCCCEEEEeCC
Confidence 34555555 3467898888654
No 298
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=30.70 E-value=51 Score=23.60 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=29.3
Q ss_pred cCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhCCCCCEEE
Q 031970 18 RGADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVL 57 (150)
Q Consensus 18 ~~ad~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~piil 57 (150)
.++|+++++-....+ .+.+.+ ..++..+.... +.|+++
T Consensus 89 ~Gadavlv~~P~y~~~~s~~~l-~~~f~~va~a~-~lPiil 127 (286)
T 2r91_A 89 RGAEAVASLPPYYFPRLSERQI-AKYFRDLCSAV-SIPVFL 127 (286)
T ss_dssp TTCSEEEECCSCSSTTCCHHHH-HHHHHHHHHHC-SSCEEE
T ss_pred cCCCEEEEcCCcCCCCCCHHHH-HHHHHHHHHhc-CCCEEE
Confidence 379999999888777 677777 77888887764 578774
No 299
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=30.70 E-value=52 Score=21.92 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=31.0
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--------------CCCCCEEEEeeCC
Q 031970 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--------------SPGVPVVLVGTKL 62 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--------------~~~~piilv~nK~ 62 (150)
-+..||++|+++..-.-.---.+ +.|+..+... ..+++++++.+--
T Consensus 70 ~l~~AD~iV~~~P~y~~~~pa~L-K~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g 129 (196)
T 3lcm_A 70 LVTWADHLIFIFPIWWSGMPAIL-KGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHN 129 (196)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHH-HHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECS
T ss_pred HHHhCCEEEEECchhhccccHHH-HHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCC
Confidence 36689999999998874433333 6788777431 2467888777653
No 300
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=30.67 E-value=55 Score=24.28 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=29.8
Q ss_pred CCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhCCCCCEEEEee
Q 031970 19 GADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGT 60 (150)
Q Consensus 19 ~ad~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~piilv~n 60 (150)
++|+++++-....+ .+.+.+ ..+++.+.....+.|++ +-|
T Consensus 118 Gadavlv~~P~y~~~~s~~~l-~~~f~~IA~aa~~lPii-lYn 158 (344)
T 2hmc_A 118 GAKGLMVIPRVLSRGSVIAAQ-KAHFKAILSAAPEIPAV-IYN 158 (344)
T ss_dssp TCSEEEECCCCSSSTTCHHHH-HHHHHHHHHHSTTSCEE-EEE
T ss_pred CCCEEEECCCccCCCCCHHHH-HHHHHHHHhhCCCCcEE-EEe
Confidence 79999999888777 677776 77888887723468877 444
No 301
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=30.27 E-value=33 Score=22.21 Aligned_cols=69 Identities=10% Similarity=0.014 Sum_probs=37.6
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh------------hCCCCCEEEEeeCCCcccccccccCCCCCCccCHH
Q 031970 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQH------------YSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTA 83 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~------------~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~ 83 (150)
-+..||++|+++..-...-.-.+ ..|+..+.. ...++|++++++--. ...... .-...
T Consensus 68 ~l~~aD~ii~~~P~y~~~~p~~l-K~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~-~~~~~~--------~~~~~ 137 (184)
T 1rli_A 68 RILQCHILIFATPIYWFGMSGTL-KLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGD-NPKIKG--------LPLIQ 137 (184)
T ss_dssp HHHTCSEEEEEEECBTTBCCHHH-HHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESS-CHHHHT--------HHHHH
T ss_pred HHHhCCEEEEEeCccccCCcHHH-HHHHHHhHHhccCccccccccccCCCeEEEEEeCCC-CCccch--------HHHHH
Confidence 46789999999998874322222 444444321 123678888877322 100000 00235
Q ss_pred HHHHHHHHcCC
Q 031970 84 QGEELRKQIGA 94 (150)
Q Consensus 84 ~~~~~~~~~~~ 94 (150)
.+..++...|+
T Consensus 138 ~l~~~l~~~G~ 148 (184)
T 1rli_A 138 QFEHIFHFMGM 148 (184)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHcCC
Confidence 56667777776
No 302
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=30.17 E-value=63 Score=18.95 Aligned_cols=40 Identities=13% Similarity=0.256 Sum_probs=21.9
Q ss_pred CCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCC
Q 031970 19 GADVFVLAFSLVS-RASYENVLKKWIPELQHYSPGVPVVLVGTKLD 63 (150)
Q Consensus 19 ~ad~~i~v~d~~~-~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 63 (150)
..|++|+=++..+ ...++ .+..+++..++.|+|++....+
T Consensus 50 ~~dlvi~d~~l~~~~~g~~-----~~~~l~~~~~~~~ii~~s~~~~ 90 (132)
T 2rdm_A 50 AIDGVVTDIRFCQPPDGWQ-----VARVAREIDPNMPIVYISGHAA 90 (132)
T ss_dssp CCCEEEEESCCSSSSCHHH-----HHHHHHHHCTTCCEEEEESSCC
T ss_pred CCCEEEEeeeCCCCCCHHH-----HHHHHHhcCCCCCEEEEeCCcc
Confidence 4566655444433 33333 3334444456789998876544
No 303
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=30.14 E-value=38 Score=22.23 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=40.9
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--------------CCCCCEEEEeeCCCcccccccccCCCCCCccC
Q 031970 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--------------SPGVPVVLVGTKLDLREDKHYLADHPGLVPVT 81 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--------------~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~ 81 (150)
-+..||++|+++.+-...---.+ ..|+..+... ..++|++++.+--....... ....
T Consensus 83 ~l~~aD~iv~~~P~y~~~~p~~l-K~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~--------~~~~ 153 (201)
T 1t5b_A 83 ELKAHDVIVIAAPMYNFNIPTQL-KNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTP--------TDLI 153 (201)
T ss_dssp HHHHCSEEEEECCCBTTBCCHHH-HHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTST--------TCCH
T ss_pred HHHhCCEEEEEeCcccCcCCHHH-HHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCc--------hhhH
Confidence 46689999999888764322223 6777776531 34678888876332111100 0113
Q ss_pred HHHHHHHHHHcCC
Q 031970 82 TAQGEELRKQIGA 94 (150)
Q Consensus 82 ~~~~~~~~~~~~~ 94 (150)
...+..++...|+
T Consensus 154 ~~~l~~~l~~~G~ 166 (201)
T 1t5b_A 154 APYLKVFLGFIGI 166 (201)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHhhcCc
Confidence 4456677777776
No 304
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=29.42 E-value=1.1e+02 Score=19.20 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=40.6
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCC
Q 031970 22 VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 94 (150)
Q Consensus 22 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 94 (150)
+..++|..+|.+.|+..+.+.+...++....+...+-||...+.-...+.. -+.....++..++..+++
T Consensus 3 vm~i~f~gddlea~ekalkemirqarkfagtvtytl~gn~l~i~itgvpeq----vrkelakeaerl~~efni 71 (170)
T 4hhu_A 3 VMVIVFEGDDLEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVITGVPEQ----VRKELAKEAERLKAEFNI 71 (170)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEEEETTEEEEEEESCCHH----HHHHHHHHHHHHHHHHTC
T ss_pred eEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEEeCCcHH----HHHHHHHHHHHHHHhcce
Confidence 467899999999999987777777777665444444444333221111000 000122456677788886
No 305
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=29.29 E-value=84 Score=21.44 Aligned_cols=41 Identities=17% Similarity=0.142 Sum_probs=31.6
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC--CCCEEEEee
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGT 60 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~--~~piilv~n 60 (150)
++|++.+.++.....+...+ .++++.+++... ++|+++.|.
T Consensus 143 ~~d~v~l~~S~l~~~~~~~~-~~~i~~l~~~~~~~~v~v~vGG~ 185 (215)
T 3ezx_A 143 KGEKVLLVGSALMTTSMLGQ-KDLMDRLNEEKLRDSVKCMFGGA 185 (215)
T ss_dssp TTSCEEEEEECSSHHHHTHH-HHHHHHHHHTTCGGGSEEEEESS
T ss_pred CCCEEEEEchhcccCcHHHH-HHHHHHHHHcCCCCCCEEEEECC
Confidence 67888887788888888777 888888888754 677776663
No 306
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET: GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP: c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Probab=29.16 E-value=64 Score=23.82 Aligned_cols=39 Identities=13% Similarity=0.247 Sum_probs=28.6
Q ss_pred CcEEEEEEeCCChh----------hHHHHHHHHHHHHhhhCCCCCEEEEe
Q 031970 20 ADVFVLAFSLVSRA----------SYENVLKKWIPELQHYSPGVPVVLVG 59 (150)
Q Consensus 20 ad~~i~v~d~~~~~----------s~~~~~~~~~~~i~~~~~~~piilv~ 59 (150)
.-.+|++|++=+++ +.+.. ++|+..|.....+.|+++|.
T Consensus 90 ~~pvlVvY~lP~RDC~a~ssgG~~~~~~Y-k~~Id~ia~~i~~~~~vvIl 138 (315)
T 1uoz_A 90 AMPVLTLYGIPHRDCGSYASGGFATGTDY-RGWIDAVASGLGSSPATIIV 138 (315)
T ss_dssp CBCEEEECCCTTBGGGSTTCBCCSSHHHH-HHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEeCCCCCCchhhccCCCCCHHHH-HHHHHHHHHHhCCCceEEEE
Confidence 34578999987654 46665 68888888776778887776
No 307
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=29.15 E-value=55 Score=23.90 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=29.5
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEE
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLV 58 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv 58 (150)
++|+++++-....+.+.+.+ ..+++.+.... +.|+++=
T Consensus 119 Gadavlv~~P~y~~~s~~~l-~~~f~~va~a~-~lPiilY 156 (315)
T 3na8_A 119 GAEAVMVLPISYWKLNEAEV-FQHYRAVGEAI-GVPVMLY 156 (315)
T ss_dssp TCSEEEECCCCSSCCCHHHH-HHHHHHHHHHC-SSCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHH-HHHHHHHHHhC-CCcEEEE
Confidence 79999999887777777777 78888888765 5787743
No 308
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=27.90 E-value=62 Score=21.04 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=25.0
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeC
Q 031970 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK 61 (150)
.++.||++|.++|..++++-... ++ .... ..++|++++...
T Consensus 75 ~i~~aD~vvA~ldg~~~D~GT~~--Ei--GyA~-A~gkPVv~~~~~ 115 (157)
T 1f8y_A 75 GIKTNDIMLGVYIPDEEDVGLGM--EL--GYAL-SQGKYVLLVIPD 115 (157)
T ss_dssp HHHTSSEEEEECCGGGCCHHHHH--HH--HHHH-HTTCEEEEEECG
T ss_pred HHHhCCEEEEEcCCCCCCccHHH--HH--HHHH-HCCCeEEEEEcC
Confidence 46799999999997654443332 11 1111 126899888643
No 309
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=27.24 E-value=68 Score=19.23 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=20.3
Q ss_pred CCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCC
Q 031970 19 GADVFVLAFSLVS-RASYENVLKKWIPELQHYSPGVPVVLVGTKLD 63 (150)
Q Consensus 19 ~ad~~i~v~d~~~-~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 63 (150)
..|++|+=++..+ ...++- +..+++. ++.|+|++....|
T Consensus 50 ~~dlvi~D~~l~~~~~g~~~-----~~~l~~~-~~~~ii~ls~~~~ 89 (140)
T 3h5i_A 50 YPDLILMDIELGEGMDGVQT-----ALAIQQI-SELPVVFLTAHTE 89 (140)
T ss_dssp CCSEEEEESSCSSSCCHHHH-----HHHHHHH-CCCCEEEEESSSS
T ss_pred CCCEEEEeccCCCCCCHHHH-----HHHHHhC-CCCCEEEEECCCC
Confidence 3566555444422 333332 2233333 5789988877655
No 310
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=27.20 E-value=92 Score=18.21 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 031970 32 RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 65 (150)
Q Consensus 32 ~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 65 (150)
|.+|+++ +.+...++. +.|+++=....|..
T Consensus 12 P~sy~Da-~~I~d~Lr~---~~~VvvNL~~ld~~ 41 (87)
T 3p04_A 12 LHSFEDA-QVIGGAFRD---GDAVVFDMSLLSRE 41 (87)
T ss_dssp CSSGGGH-HHHHHHHHT---TCCEEEECTTSCHH
T ss_pred cCcHHHH-HHHHHHHHC---CCEEEEECCCCCHH
Confidence 5678887 777777775 68888877766643
No 311
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=26.78 E-value=69 Score=22.64 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=30.7
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--------------CCCCCEEEEeeCC
Q 031970 17 YRGADVFVLAFSLVSRASYENVLKKWIPELQHY--------------SPGVPVVLVGTKL 62 (150)
Q Consensus 17 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--------------~~~~piilv~nK~ 62 (150)
+..||++|+.+.+-.-.---.+ +.|+..+... ..+++++++.+--
T Consensus 91 l~~AD~IV~~~P~y~~s~Pa~L-K~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~G 149 (273)
T 1d4a_A 91 LEAADLVIFQFPLQWFGVPAIL-KGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTG 149 (273)
T ss_dssp HHHCSEEEEEEECBTTBCCHHH-HHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECS
T ss_pred HHhCCEEEEECchhhccCCHHH-HHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCC
Confidence 7789999999999874322233 6788776432 2467888777643
No 312
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=26.48 E-value=91 Score=18.10 Aligned_cols=17 Identities=6% Similarity=0.340 Sum_probs=12.7
Q ss_pred EEEEEEeCCChhhHHHH
Q 031970 22 VFVLAFSLVSRASYENV 38 (150)
Q Consensus 22 ~~i~v~d~~~~~s~~~~ 38 (150)
.++++||+++......+
T Consensus 5 ~~lV~YDI~~~kr~~kv 21 (90)
T 1zpw_X 5 LYAVAYDIPDDTRRVKL 21 (90)
T ss_dssp EEEEEEECCCHHHHHHH
T ss_pred EEEEEEeCCChHHHHHH
Confidence 48999999987555444
No 313
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=26.27 E-value=50 Score=24.08 Aligned_cols=38 Identities=13% Similarity=0.282 Sum_probs=28.7
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEE
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLV 58 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv 58 (150)
++|+++++-....+.+.+.+ ..+++.+.... +.|+++=
T Consensus 106 Gadavlv~~P~y~~~s~~~l-~~~f~~va~a~-~lPiilY 143 (316)
T 3e96_A 106 GADAVMIHMPIHPYVTAGGV-YAYFRDIIEAL-DFPSLVY 143 (316)
T ss_dssp TCSEEEECCCCCSCCCHHHH-HHHHHHHHHHH-TSCEEEE
T ss_pred CCCEEEEcCCCCCCCCHHHH-HHHHHHHHHhC-CCCEEEE
Confidence 79999988777777777777 77888887654 4787654
No 314
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=26.13 E-value=1.5e+02 Score=19.72 Aligned_cols=42 Identities=10% Similarity=0.201 Sum_probs=28.9
Q ss_pred CCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhhCCCCCEEEEee
Q 031970 19 GADVFVLAFSLVSR----ASYENVLKKWIPELQHYSPGVPVVLVGT 60 (150)
Q Consensus 19 ~ad~~i~v~d~~~~----~s~~~~~~~~~~~i~~~~~~~piilv~n 60 (150)
..|.+++.+-.+|. +.+..-+..++..++...++.+++++..
T Consensus 94 ~pd~vvi~~G~ND~~~~~~~~~~~l~~~i~~l~~~~p~~~iil~~~ 139 (229)
T 1fxw_F 94 KPKVIVVWVGTNNHENTAEEVAGGIEAIVQLINTRQPQAKIIVLGL 139 (229)
T ss_dssp CCSEEEEECCTTCTTSCHHHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred CCCEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 57899999877764 3343334677777777667777877653
No 315
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=25.93 E-value=1.6e+02 Score=20.05 Aligned_cols=66 Identities=11% Similarity=0.154 Sum_probs=39.9
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh-----CCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHH
Q 031970 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-----SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 90 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~-----~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~ 90 (150)
-+..||++|+....-...-.-.+ ..|+..+... ..+.|++++++--.- ... -....+..++.
T Consensus 76 ~l~~AD~iI~~sP~y~~~~p~~l-K~~iDr~~~~~~~~~l~gK~~~~i~t~g~~-g~~-----------~~~~~l~~~l~ 142 (242)
T 1sqs_A 76 ELLESDIIIISSPVYLQNVSVDT-KNFIERIGGWSHLFRLAGKFVVTLDVAESN-GSD-----------NVSEYLRDIFS 142 (242)
T ss_dssp HHHHCSEEEEEEEECSSSCCHHH-HHHHHHTGGGTTTTTTTTCEEEEEEEESSC-CSC-----------CHHHHHHHHHH
T ss_pred HHHHCCEEEEEccccccCCCHHH-HHHHHHHHHhccccccCCCEEEEEEeCCCC-chh-----------hHHHHHHHHHH
Confidence 36789999999998874322222 5566655321 246788877764221 111 14456777788
Q ss_pred HcCC
Q 031970 91 QIGA 94 (150)
Q Consensus 91 ~~~~ 94 (150)
..|+
T Consensus 143 ~~G~ 146 (242)
T 1sqs_A 143 YMGG 146 (242)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 7886
No 316
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=25.85 E-value=87 Score=22.76 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=29.2
Q ss_pred CC-cEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEE
Q 031970 19 GA-DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLV 58 (150)
Q Consensus 19 ~a-d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv 58 (150)
++ |+++++-....+.+.+.+ ..+++.+.... +.|+++=
T Consensus 102 Ga~davlv~~P~y~~~s~~~l-~~~f~~va~a~-~lPiilY 140 (311)
T 3h5d_A 102 GGFAAGLAIVPYYNKPSQEGM-YQHFKAIADAS-DLPIIIY 140 (311)
T ss_dssp CCCSEEEEECCCSSCCCHHHH-HHHHHHHHHSC-SSCEEEE
T ss_pred CCCcEEEEcCCCCCCCCHHHH-HHHHHHHHHhC-CCCEEEE
Confidence 55 999999888777777777 77888887754 6888754
No 317
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=25.66 E-value=43 Score=23.96 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=27.4
Q ss_pred CCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCEEE
Q 031970 19 GADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVL 57 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piil 57 (150)
++|+++++-....+. +.+.+ ..+++.+.. +.|+++
T Consensus 88 Gadavlv~~P~y~~~~~~~~l-~~~f~~va~---~lPiil 123 (283)
T 2pcq_A 88 GAMALLATPPRYYHGSLGAGL-LRYYEALAE---KMPLFL 123 (283)
T ss_dssp TCSEEEECCCCTTGGGTTTHH-HHHHHHHHH---HSCEEE
T ss_pred CCCEEEecCCcCCCCCCHHHH-HHHHHHHhc---CCCEEE
Confidence 899999998887777 77776 677777776 578774
No 318
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=25.60 E-value=1.1e+02 Score=17.90 Aligned_cols=37 Identities=14% Similarity=0.253 Sum_probs=20.5
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeC
Q 031970 20 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61 (150)
Q Consensus 20 ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK 61 (150)
.|++|+=++..+...+ .++..+++..++.|+|++...
T Consensus 47 ~dlvi~D~~l~~~~g~-----~~~~~l~~~~~~~~ii~~s~~ 83 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGI-----EVIRHLAEHKSPASLILISGY 83 (135)
T ss_dssp TEEEEEECCTTTTHHH-----HHHHHHHHTTCCCEEEEEESS
T ss_pred CCEEEEeCCCCCCCHH-----HHHHHHHhCCCCCCEEEEEec
Confidence 4555544444443333 344555555677888887643
No 319
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=25.60 E-value=74 Score=21.29 Aligned_cols=44 Identities=18% Similarity=0.278 Sum_probs=27.8
Q ss_pred cccCCcEEEEEEeCCC---hhhHHHHHHHHHHHH--hhhCCCCCEEEEee
Q 031970 16 SYRGADVFVLAFSLVS---RASYENVLKKWIPEL--QHYSPGVPVVLVGT 60 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i--~~~~~~~piilv~n 60 (150)
.+..||++|++..-.+ +..+.+. -.|+... .....++|+.+++.
T Consensus 64 ~i~~aD~~ii~tPeYn~s~pg~LKn~-iDwlsr~~~~~~~~gKpv~~v~~ 112 (190)
T 3u7r_A 64 RIEHSDAVLAITPEYNRSYPGMIKNA-IDWATRPYGQNSWKGKPAAVIGT 112 (190)
T ss_dssp HHHTSSEEEEECCCBTTBCCHHHHHH-HHHHHCSTTCCTTTTCEEEEEEE
T ss_pred HHHhCCcEEEechhhcccCCHHHHHH-HHHhcccccCCccCCCEEEEEEe
Confidence 5778999999987766 4455554 2444321 11224799998875
No 320
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=25.41 E-value=82 Score=19.68 Aligned_cols=41 Identities=17% Similarity=-0.018 Sum_probs=25.8
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 65 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 65 (150)
.|..+|+.=|.+.+.....+ +.+- .. .++|++.+.+|.+|.
T Consensus 40 ka~LViiA~D~~p~~~~~~i-~~lc----~~-~~Ip~~~v~sk~~LG 80 (126)
T 2xzm_U 40 QALFVCVAEDCDQGNYVKLV-KALC----AK-NEIKYVSVPKRASLG 80 (126)
T ss_dssp CCSEEEEESSCCSTTHHHHH-HHHH----HH-TTCCEEEESCSHHHH
T ss_pred CceEEEEeCCCChHHHHHHH-HHHH----HH-hCCCEEEECCHHHHH
Confidence 57777777777655544433 2222 11 279999998877753
No 321
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=25.32 E-value=95 Score=21.83 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=29.4
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEE-EEeeCCCcc
Q 031970 17 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLDLR 65 (150)
Q Consensus 17 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-lv~nK~D~~ 65 (150)
...+|++|+|..... .+...+ ...++.+.+. +.+++ +|.|+.|..
T Consensus 212 ~~~aD~vilVv~~~~-~~~~~~-~~~~~~l~~~--~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 212 SKFTGNVVYVVNSEN-NNKDEV-KKGKELIEAT--GAKLLGVVLNRMPKD 257 (271)
T ss_dssp HHHHCEEEEEEETTS-CCHHHH-HHHHHHHHTT--TCEEEEEEEEEECC-
T ss_pred HHHCCEEEEEEeCCC-CcHHHH-HHHHHHHHhC--CCCEEEEEEeCCcCC
Confidence 356899999998764 344444 4555555543 56766 889998843
No 322
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=25.26 E-value=79 Score=19.26 Aligned_cols=65 Identities=20% Similarity=0.177 Sum_probs=38.4
Q ss_pred cccCCcEEEEEEeCCChhhH-H-HHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcC
Q 031970 16 SYRGADVFVLAFSLVSRASY-E-NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 93 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~-~-~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 93 (150)
.+.++|+++++......... . .+ ..++..+.....+.++.++++--... . -....+...++..|
T Consensus 42 ~l~~~d~iiig~pty~~g~~p~~~~-~~fl~~l~~~l~~k~~~~f~t~g~~~--~-----------~a~~~l~~~l~~~G 107 (138)
T 5nul_A 42 ELLNEDILILGCSAMTDEVLEESEF-EPFIEEISTKISGKKVALFGSYGWGD--G-----------KWMRDFEERMNGYG 107 (138)
T ss_dssp HHTTCSEEEEEECCBTTTBCCTTTH-HHHHHHHGGGCTTCEEEEEEEESSSC--S-----------HHHHHHHHHHHHTT
T ss_pred HHhhCCEEEEEcCccCCCCCChHHH-HHHHHHHHhhcCCCEEEEEEecCCCC--C-----------hHHHHHHHHHHHCC
Confidence 46689999999887543211 1 12 34444554334578999888743211 1 14566777777777
Q ss_pred C
Q 031970 94 A 94 (150)
Q Consensus 94 ~ 94 (150)
.
T Consensus 108 ~ 108 (138)
T 5nul_A 108 C 108 (138)
T ss_dssp C
T ss_pred C
Confidence 6
No 323
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=24.85 E-value=45 Score=23.94 Aligned_cols=37 Identities=11% Similarity=0.314 Sum_probs=27.3
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEE
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVL 57 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piil 57 (150)
++|+++++-....+.+.+.+ ..+++.+.... +.|+++
T Consensus 96 Gadavlv~~P~y~~~s~~~l-~~~f~~ia~a~-~lPiil 132 (291)
T 3a5f_A 96 GVDGLLVITPYYNKTTQKGL-VKHFKAVSDAV-STPIII 132 (291)
T ss_dssp TCSEEEEECCCSSCCCHHHH-HHHC-CTGGGC-CSCEEE
T ss_pred CCCEEEEcCCCCCCCCHHHH-HHHHHHHHHhc-CCCEEE
Confidence 79999999888777777776 67777776654 578774
No 324
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=24.64 E-value=73 Score=22.85 Aligned_cols=37 Identities=14% Similarity=0.307 Sum_probs=28.5
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEE
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVL 57 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piil 57 (150)
++|+++++-....+.+.+.+ ..+++.+.... +.|+++
T Consensus 99 Gadavlv~~P~y~~~~~~~l-~~~f~~va~a~-~lPiil 135 (293)
T 1f6k_A 99 GYDCLSAVTPFYYKFSFPEI-KHYYDTIIAET-GSNMIV 135 (293)
T ss_dssp TCSEEEEECCCSSCCCHHHH-HHHHHHHHHHH-CCCEEE
T ss_pred CCCEEEECCCCCCCCCHHHH-HHHHHHHHHhC-CCCEEE
Confidence 89999999888877777776 67777777654 478764
No 325
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=24.30 E-value=92 Score=18.25 Aligned_cols=40 Identities=13% Similarity=0.232 Sum_probs=21.8
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCC
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 63 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 63 (150)
..|++|+=++..+...++ .+..+++..++.|+|++....+
T Consensus 46 ~~dlii~d~~l~~~~g~~-----~~~~l~~~~~~~~ii~~s~~~~ 85 (134)
T 3f6c_A 46 KPDIVIIDVDIPGVNGIQ-----VLETLRKRQYSGIIIIVSAKND 85 (134)
T ss_dssp CCSEEEEETTCSSSCHHH-----HHHHHHHTTCCSEEEEEECC--
T ss_pred CCCEEEEecCCCCCChHH-----HHHHHHhcCCCCeEEEEeCCCC
Confidence 456666555544433333 3445555567888887765443
No 326
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=29.62 E-value=17 Score=24.63 Aligned_cols=44 Identities=27% Similarity=0.191 Sum_probs=27.5
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh----hCCCCCEEEEee
Q 031970 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQH----YSPGVPVVLVGT 60 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~----~~~~~piilv~n 60 (150)
.+..||++|++...-+..---. ++.|+..+.. ...++|+.++++
T Consensus 70 ~i~~AD~iIi~tP~Y~~s~p~~-lK~~iD~l~~~~~~~l~gK~v~~v~t 117 (199)
T 3s2y_A 70 QIATADAVVIVTPEYNYSVPGV-LKNAIDWLSRVSPQPLAGKPVALVTA 117 (199)
Confidence 5678999999988776422212 2455544443 234788888775
No 327
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=23.58 E-value=51 Score=23.94 Aligned_cols=46 Identities=15% Similarity=0.126 Sum_probs=28.7
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCc
Q 031970 17 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64 (150)
Q Consensus 17 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~ 64 (150)
+.++|++|++=|+++.....++ ..+++.+.+. +..|+++|.---|.
T Consensus 77 i~~~D~vi~aGDl~~~g~~~e~-~~~~~~L~~l-~~~~v~~V~GNHD~ 122 (296)
T 3rl5_A 77 MPYGDILLHTGDFTELGLPSEV-KKFNDWLGNL-PYEYKIVIAGNHEL 122 (296)
T ss_dssp CCSCSEEEECSCCSSSCCHHHH-HHHHHHHHTS-CCSEEEECCCTTCG
T ss_pred cCCCCEEEECCcccCCCCHHHH-HHHHHHHHhC-CCCeEEEEcCCccc
Confidence 4689999999999986655554 4555555543 22345555444444
No 328
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=23.27 E-value=65 Score=23.40 Aligned_cols=59 Identities=8% Similarity=0.162 Sum_probs=37.5
Q ss_pred CCcEEEEEEeCC---ChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHc
Q 031970 19 GADVFVLAFSLV---SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 92 (150)
Q Consensus 19 ~ad~~i~v~d~~---~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 92 (150)
++|+++++-... .+.+.+.+ ..+++.+.+.. +.|+++ -|-- ... ..+..+.+..+++..
T Consensus 103 Gadavlv~~Pyy~~~~~~s~~~l-~~~f~~va~a~-~lPiil-Yn~P-~tg-----------~~l~~~~~~~La~~~ 164 (309)
T 3fkr_A 103 GAAMVMAMPPYHGATFRVPEAQI-FEFYARVSDAI-AIPIMV-QDAP-ASG-----------TALSAPFLARMAREI 164 (309)
T ss_dssp TCSEEEECCSCBTTTBCCCHHHH-HHHHHHHHHHC-SSCEEE-EECG-GGC-----------CCCCHHHHHHHHHHS
T ss_pred CCCEEEEcCCCCccCCCCCHHHH-HHHHHHHHHhc-CCCEEE-EeCC-CCC-----------CCCCHHHHHHHHhhC
Confidence 789999886654 34566776 67788887765 688764 3421 111 124667777777654
No 329
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=23.24 E-value=86 Score=23.34 Aligned_cols=48 Identities=6% Similarity=0.041 Sum_probs=26.0
Q ss_pred ccccCCcEEEEEEeCCChh------hHHHHHHHHHHHHhhhCCCCC---EEEEeeCCC
Q 031970 15 LSYRGADVFVLAFSLVSRA------SYENVLKKWIPELQHYSPGVP---VVLVGTKLD 63 (150)
Q Consensus 15 ~~~~~ad~~i~v~d~~~~~------s~~~~~~~~~~~i~~~~~~~p---iilv~nK~D 63 (150)
..+..+|.+|++...+... ....+ ...++.+.+...+.+ ++.+.|+.+
T Consensus 265 ~al~~aD~vliv~~p~~~~~~~~~~~l~~l-~~~~~~l~~~~~~~~l~giv~vl~~~~ 321 (403)
T 3ez9_A 265 NGLAASDLLLTPTPPAQVDFHSTLKYLTRL-PEMLEQLEEEGVEPRLSASIGFMSKMT 321 (403)
T ss_dssp HHHHHCSEEEEEECSSHHHHHHHHHHHHTH-HHHHHHHHHTTCCCCCCEEEEEECC--
T ss_pred HHHHHCCEEEEEecCchhhHHHHHHHHHHH-HHHHHHHHhcCCCCceeEEEEEEeccC
Confidence 3566899999999876432 11222 344444554433433 355778776
No 330
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=22.94 E-value=85 Score=20.74 Aligned_cols=68 Identities=16% Similarity=0.243 Sum_probs=39.9
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--------------CCCCCEEEEeeCCCcccccccccCCCCCCccC
Q 031970 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--------------SPGVPVVLVGTKLDLREDKHYLADHPGLVPVT 81 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--------------~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~ 81 (150)
-+..||++|+++.+-.-.---.+ +.|+..+... ..+++++++.+--.-.... ...
T Consensus 91 ~l~~aD~iv~~~P~y~~~~pa~l-K~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~----------~~~ 159 (208)
T 2hpv_A 91 QFLSADKVVIANPMWNLNVPTRL-KAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGK----------DFA 159 (208)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHH-HHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSC----------SHH
T ss_pred HHHhCCEEEEEeccccCCCCHHH-HHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCc----------chH
Confidence 36689999999998874432233 6777776531 2467887776532211100 113
Q ss_pred HHHHHHHHHHcCC
Q 031970 82 TAQGEELRKQIGA 94 (150)
Q Consensus 82 ~~~~~~~~~~~~~ 94 (150)
...+..++...|+
T Consensus 160 ~~~l~~~~~~~G~ 172 (208)
T 2hpv_A 160 SQYIKAILNFIGV 172 (208)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCC
Confidence 3455667777776
No 331
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=22.30 E-value=68 Score=23.32 Aligned_cols=37 Identities=24% Similarity=0.251 Sum_probs=26.4
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEE
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVL 57 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piil 57 (150)
++|+++++-.. ...+.+.+ ..+++.+....+ +.|+++
T Consensus 102 Gadavlv~~P~-~~~s~~~l-~~~f~~va~a~~~~lPiil 139 (313)
T 3dz1_A 102 GAAGVMIAPPP-SLRTDEQI-TTYFRQATEAIGDDVPWVL 139 (313)
T ss_dssp TCSEEEECCCT-TCCSHHHH-HHHHHHHHHHHCTTSCEEE
T ss_pred CCCEEEECCCC-CCCCHHHH-HHHHHHHHHhCCCCCcEEE
Confidence 78998887555 44576776 778888877654 588764
No 332
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=22.25 E-value=1.3e+02 Score=19.77 Aligned_cols=45 Identities=18% Similarity=0.241 Sum_probs=29.2
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh---------CCCCCEEEEeeC
Q 031970 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHY---------SPGVPVVLVGTK 61 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~---------~~~~piilv~nK 61 (150)
-+..||++|+.+.+-.-.---.+ +.|+..+-.. ..+++++++.+-
T Consensus 48 ~l~~aD~iV~~~P~y~~~~pa~l-K~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~ 101 (177)
T 3ha2_A 48 LLLQNDRIILEFPLYWYSAPALL-KQWMDTVMTTKFATGHQYALEGKELGIVVST 101 (177)
T ss_dssp HHHTCSEEEEEEECBTTBCCHHH-HHHHHHHSCHHHHSTTTCTTTTCEEEEEEEE
T ss_pred HHHhCCEEEEECChhhccCCHHH-HHHHHHHhhcccccCCCcCCCCCEEEEEEeC
Confidence 46789999999998764322222 6677665321 246777777664
No 333
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=22.07 E-value=50 Score=21.56 Aligned_cols=47 Identities=4% Similarity=-0.021 Sum_probs=28.7
Q ss_pred ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh-----hCCCCCEEEEeeCC
Q 031970 15 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQH-----YSPGVPVVLVGTKL 62 (150)
Q Consensus 15 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~-----~~~~~piilv~nK~ 62 (150)
.-+..+|++|+........-.-.+ ..|+..+.. ...++|+.++++--
T Consensus 64 ~~l~~aD~ii~gsP~y~~~~~~~l-k~~ld~~~~~~~~~~l~~K~~~~~~t~g 115 (198)
T 3b6i_A 64 QELADYDAIIFGTPTRFGNMSGQM-RTFLDQTGGLWASGALYGKLASVFSSTG 115 (198)
T ss_dssp GGGGGCSEEEEEEEEETTEECHHH-HHHHTTCHHHHHHTTTTTCEEEEEEEES
T ss_pred HHHHHCCEEEEEeChhcCCchHHH-HHHHHHhhhhhhhcccCCCEEEEEEeCC
Confidence 356789999999888763322222 445444432 23578888777653
No 334
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=21.95 E-value=1.3e+02 Score=17.57 Aligned_cols=17 Identities=0% Similarity=0.266 Sum_probs=12.2
Q ss_pred EEEEEEeCCChhhHHHH
Q 031970 22 VFVLAFSLVSRASYENV 38 (150)
Q Consensus 22 ~~i~v~d~~~~~s~~~~ 38 (150)
-++++||+.+......+
T Consensus 5 ~vlV~YDI~~~krr~kv 21 (91)
T 3exc_X 5 KLLVVYDVSDDSKRNKL 21 (91)
T ss_dssp EEEEEEECCSHHHHHHH
T ss_pred EEEEEEeCCCchHHHHH
Confidence 57999999986544433
No 335
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=21.87 E-value=1.4e+02 Score=17.85 Aligned_cols=76 Identities=17% Similarity=0.202 Sum_probs=40.4
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 031970 18 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 97 (150)
Q Consensus 18 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 97 (150)
...|++|+=++..+...++ ++..+++..++.|+|++....+ ... ..-+...|...|
T Consensus 66 ~~~dlvi~D~~l~~~~g~~-----~~~~l~~~~~~~~ii~lt~~~~------------------~~~-~~~~~~~ga~~~ 121 (146)
T 4dad_A 66 DAFDILMIDGAALDTAELA-----AIEKLSRLHPGLTCLLVTTDAS------------------SQT-LLDAMRAGVRDV 121 (146)
T ss_dssp TTCSEEEEECTTCCHHHHH-----HHHHHHHHCTTCEEEEEESCCC------------------HHH-HHHHHTTTEEEE
T ss_pred CCCCEEEEeCCCCCccHHH-----HHHHHHHhCCCCcEEEEeCCCC------------------HHH-HHHHHHhCCcee
Confidence 3467666655554444433 3444555557789888765433 122 222334554345
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhC
Q 031970 98 IECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 98 ~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+.- .....++...+.+.+..
T Consensus 122 l~K----p~~~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 122 LRW----PLEPRALDDALKRAAAQ 141 (146)
T ss_dssp EES----SCCHHHHHHHHHHHHHT
T ss_pred EcC----CCCHHHHHHHHHHHHhh
Confidence 432 34677777766665543
No 336
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=21.65 E-value=1.1e+02 Score=17.45 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=19.5
Q ss_pred CCcEEEEEEeCC-ChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCC
Q 031970 19 GADVFVLAFSLV-SRASYENVLKKWIPELQHY--SPGVPVVLVGTKL 62 (150)
Q Consensus 19 ~ad~~i~v~d~~-~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~ 62 (150)
..|++|+=++.. +...++ ++..+++. .++.|+|++ ...
T Consensus 49 ~~dlvi~d~~~~~~~~g~~-----~~~~l~~~~~~~~~~ii~~-~~~ 89 (127)
T 2gkg_A 49 RPDLVVLAVDLSAGQNGYL-----ICGKLKKDDDLKNVPIVII-GNP 89 (127)
T ss_dssp CCSEEEEESBCGGGCBHHH-----HHHHHHHSTTTTTSCEEEE-ECG
T ss_pred CCCEEEEeCCCCCCCCHHH-----HHHHHhcCccccCCCEEEE-ecC
Confidence 356655544433 223332 34444444 357899888 543
No 337
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=21.54 E-value=1.3e+02 Score=17.40 Aligned_cols=20 Identities=10% Similarity=0.265 Sum_probs=12.4
Q ss_pred HHHHhhhCCCCCEEEEeeCC
Q 031970 43 IPELQHYSPGVPVVLVGTKL 62 (150)
Q Consensus 43 ~~~i~~~~~~~piilv~nK~ 62 (150)
+..+++..++.|+|++....
T Consensus 66 ~~~l~~~~~~~~ii~~s~~~ 85 (126)
T 1dbw_A 66 LRNLGDLKINIPSIVITGHG 85 (126)
T ss_dssp HHHHHHTTCCCCEEEEECTT
T ss_pred HHHHHhcCCCCCEEEEECCC
Confidence 34444445678998886543
No 338
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=21.46 E-value=59 Score=22.77 Aligned_cols=66 Identities=11% Similarity=-0.104 Sum_probs=40.5
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh------CCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHH
Q 031970 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHY------SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 89 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~------~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~ 89 (150)
-+..||++|++....+..-.-.+ +.|+..+... ..++|+.++++--.. ... .....+..++
T Consensus 95 ~i~~AD~iI~~sP~Yn~sipa~L-Kn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~-gg~-----------~a~~~Lr~~l 161 (247)
T 2q62_A 95 LSIWSEGQVWVSPERHGAMTGIM-KAQIDWIPLSTGSIRPTQGKTLAVMQVSGGS-QSF-----------NAVNQMRILG 161 (247)
T ss_dssp HHHHCSEEEEEEECSSSSCCHHH-HHHHHTSCSCBTTBCSSTTCEEEEEEECSSS-CCC-----------HHHHHHHHHH
T ss_pred HHHHCCEEEEEeCCCCCCccHHH-HHHHHHhhhccCcccccCCCEEEEEEeCCCc-cHH-----------HHHHHHHHHH
Confidence 46689999999998874322222 5666655432 247899888874221 111 1345667777
Q ss_pred HHcCC
Q 031970 90 KQIGA 94 (150)
Q Consensus 90 ~~~~~ 94 (150)
...++
T Consensus 162 ~~lg~ 166 (247)
T 2q62_A 162 RWMRM 166 (247)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77776
No 339
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=21.25 E-value=99 Score=23.22 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=31.3
Q ss_pred CCcEEEEEEeCCC------hhhHHHHHHHHHHHHhhhCCCCCEEEEeeC
Q 031970 19 GADVFVLAFSLVS------RASYENVLKKWIPELQHYSPGVPVVLVGTK 61 (150)
Q Consensus 19 ~ad~~i~v~d~~~------~~s~~~~~~~~~~~i~~~~~~~piilv~nK 61 (150)
.+|++++.+=.+| ...+..-+..++..+++..++.||+++.--
T Consensus 244 ~pdlVvI~lGtND~~~~~~~~~~~~~l~~li~~ir~~~P~a~Illv~p~ 292 (385)
T 3skv_A 244 PADLISLRVGTSNFMDGDGFVDFPANLVGFVQIIRERHPLTPIVLGSSV 292 (385)
T ss_dssp CCSEEEEEESHHHHTTTCCTTTHHHHHHHHHHHHHTTCSSSCEEEEECC
T ss_pred CCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEcCC
Confidence 6788888886554 234444447888888887788999988754
No 340
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=21.25 E-value=72 Score=20.87 Aligned_cols=71 Identities=14% Similarity=0.117 Sum_probs=40.2
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh-----hCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHH
Q 031970 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQH-----YSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 90 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~-----~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~ 90 (150)
-+.++|++|+....-...-.-.+ ..|+..+.. ...++|+.++++--....... .....+..++.
T Consensus 67 ~l~~aD~ii~gsP~y~~~~~~~l-k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~g~~----------~~~~~l~~~l~ 135 (199)
T 2zki_A 67 DMRWADGFAIGSPTRYGNMAGGL-KTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGHE----------TTILTMSTYAY 135 (199)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHH-HHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTSSSS----------HHHHHHTHHHH
T ss_pred HHHhCCEEEEECCccccCccHHH-HHHHHHhhhcccccccCCCEEEEEEeCCCCCCCHH----------HHHHHHHHHHH
Confidence 46689999999988763322222 455554421 235688887776433211110 14456667777
Q ss_pred HcCCcEEE
Q 031970 91 QIGASYYI 98 (150)
Q Consensus 91 ~~~~~~~~ 98 (150)
..++ .++
T Consensus 136 ~~g~-~~~ 142 (199)
T 2zki_A 136 HFGM-IIV 142 (199)
T ss_dssp HHTC-EEC
T ss_pred HCCe-EEe
Confidence 7776 443
No 341
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=21.13 E-value=1.1e+02 Score=20.15 Aligned_cols=39 Identities=10% Similarity=0.125 Sum_probs=27.0
Q ss_pred HHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEe
Q 031970 43 IPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC 100 (150)
Q Consensus 43 ~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 100 (150)
.+.|.+. ..|+|++|. .-..+ ..+++.++++. ++ |++.+
T Consensus 29 a~lI~~A--kRPvIl~Gg-v~~~~--------------A~~eL~~~ae~-~i-PVvtT 67 (174)
T 1ytl_A 29 ANMIKKA--KRPLLIVGP-DMTDE--------------MFERVKKFVEK-DI-TVVAT 67 (174)
T ss_dssp HHHHHHC--SSEEEEECS-CCCHH--------------HHHHHHHHHTS-SS-EEEEE
T ss_pred HHHHHcC--CCCEEEECC-CCCcc--------------HHHHHHHHHHc-CC-CEEEc
Confidence 4455543 689999998 64221 44677889999 87 87755
No 342
>2pd2_A Hypothetical protein ST0148; structural genomics, NPPSFA, national project on protein STR and functional analyses; 2.06A {Sulfolobus tokodaii}
Probab=21.02 E-value=1.3e+02 Score=17.46 Aligned_cols=36 Identities=8% Similarity=0.055 Sum_probs=21.5
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeC
Q 031970 25 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61 (150)
Q Consensus 25 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK 61 (150)
+||++++++.+...+....+.+.. .++..+.++.+-
T Consensus 3 vv~~v~d~~~~~~al~~~~n~~~~-~~~~~v~vv~~g 38 (108)
T 2pd2_A 3 VVVQIKDFDKVPQALRSVINLYND-IKDAEIEVVLHQ 38 (108)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHH-STTCEEEEEECG
T ss_pred EEEEeCChHHHHHHHHHHHHHHhh-CCCCeEEEEEcC
Confidence 456666888777664444444443 456677777654
No 343
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=21.00 E-value=79 Score=25.21 Aligned_cols=56 Identities=16% Similarity=0.094 Sum_probs=34.3
Q ss_pred CCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970 52 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 52 ~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
++|+++..|+.....+. ..+.+.++|...|. .+..+=++-|+|-.++-+.+++.+-
T Consensus 374 GvpvVVaiN~F~tDT~a------------Ei~~v~~~~~~~G~-~~~~~wa~GG~G~~~LA~~Vv~~~~ 429 (557)
T 3pzx_A 374 GVPAVVAINAFPTDTEA------------ELNLLYELCAKAGA-EVALSWAKGGEGGLELARKVLQTLE 429 (557)
T ss_dssp TCCEEEEEECCTTCCHH------------HHHHHHHHCCSSEE-EEECHHHHGGGGGHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCHH------------HHHHHHHHHHHcCC-CEEEEecccchhHHHHHHHHHHHHh
Confidence 79999999997643221 22344555555554 4443345556777777666666654
No 344
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=20.93 E-value=1.2e+02 Score=19.54 Aligned_cols=44 Identities=16% Similarity=0.140 Sum_probs=29.8
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCC
Q 031970 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL 62 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~ 62 (150)
.+.+.|.+++.+.+-...-...+ ..++..+. ..+.+++++++-.
T Consensus 84 ~l~~yD~iilg~Pvy~g~~~~~~-~~fl~~~~--l~gk~v~~f~t~g 127 (171)
T 4ici_A 84 NIGTYDVVFIGYPIWWDLAPRII-NTFIEGHS--LKGKTVVPFATSG 127 (171)
T ss_dssp TGGGCSEEEEEEECBTTBCCHHH-HHHHHHSC--CTTSEEEEEEECS
T ss_pred cHhHCCEEEEecccccCCchHHH-HHHHHHcC--CCcCEEEEEEecC
Confidence 46789999999998764333333 56665552 3578888888754
No 345
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=20.91 E-value=1.9e+02 Score=19.24 Aligned_cols=83 Identities=7% Similarity=0.049 Sum_probs=43.5
Q ss_pred CCcEEEEEEeCCChh--------hHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccccc-cccC--CCCCCccCH
Q 031970 19 GADVFVLAFSLVSRA--------SYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKH-YLAD--HPGLVPVTT 82 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~--------s~~~~~~~~~~~i~~~~-----~~~piilv~nK~D~~~~~~-~~~~--~~~~~~v~~ 82 (150)
.+|.+++.+=.+|.. .+...+..++..++... ++.+++++.. ........ .... ..+......
T Consensus 101 p~d~VvI~~GtND~~~~~~~~~~~~~~~l~~li~~ir~~~~~~~~p~~~iil~~p-~~~~~~~~~~~~~~~~~~~~~~~~ 179 (232)
T 3dci_A 101 PLDLVIIMLGTNDIKPVHGGRAEAAVSGMRRLAQIVETFIYKPREAVPKLLIVAP-PPCVAGPGGEPAGGRDIEQSMRLA 179 (232)
T ss_dssp SCSEEEEECCTTTTSGGGTSSHHHHHHHHHHHHHHHHHCCCSSTTCCCEEEEEEC-CCCCCCTTSSCGGGCCHHHHTTHH
T ss_pred CCCEEEEEeccCCCccccCCCHHHHHHHHHHHHHHHHHhcccccCCCCeEEEEeC-CCcCcccCcccccccHHHHHHHHH
Confidence 359999999777642 23333366677776654 5667776642 11111000 0000 000001234
Q ss_pred HHHHHHHHHcCCcEEEEeccC
Q 031970 83 AQGEELRKQIGASYYIECSSK 103 (150)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~Sa~ 103 (150)
..+.++++.+++ +++.+...
T Consensus 180 ~~~~~~a~~~~v-~~iD~~~~ 199 (232)
T 3dci_A 180 PLYRKLAAELGH-HFFDAGSV 199 (232)
T ss_dssp HHHHHHHHHHTC-EEEEGGGT
T ss_pred HHHHHHHHHhCC-eEEcchHh
Confidence 567788888997 88775443
No 346
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=20.54 E-value=1.1e+02 Score=22.28 Aligned_cols=50 Identities=18% Similarity=0.310 Sum_probs=33.2
Q ss_pred ccccCCcEEEEEEeCCChh--h----H---HHHHHHHHHHHhhhCCCCCEEEEeeCCCc
Q 031970 15 LSYRGADVFVLAFSLVSRA--S----Y---ENVLKKWIPELQHYSPGVPVVLVGTKLDL 64 (150)
Q Consensus 15 ~~~~~ad~~i~v~d~~~~~--s----~---~~~~~~~~~~i~~~~~~~piilv~nK~D~ 64 (150)
..+++||++|+.......+ + + -.+...+.+.+.+.+++.-++++.|=.|.
T Consensus 69 ~a~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~ 127 (321)
T 3p7m_A 69 KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLDI 127 (321)
T ss_dssp GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHH
T ss_pred HHHCCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCchHH
Confidence 5688999999986544321 1 1 12236677788888888777788776664
No 347
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=20.52 E-value=31 Score=24.26 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=19.3
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEee
Q 031970 21 DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60 (150)
Q Consensus 21 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~n 60 (150)
.++|+||+...+...+.+ .... .....+..+++|+.
T Consensus 104 ggII~~f~~p~~~~~~~i-~~~~---~~~~~dg~~v~Vg~ 139 (233)
T 3uc9_A 104 AGIILITDIRQTKPQELL-HQFM---IAAHRNTFVVLVNV 139 (233)
T ss_dssp EEEEEEECHHHHCGGGTH-HHHH---HHSCTTCEEEEEEC
T ss_pred ceEEEEEeCCCcchHHHH-HHHh---ccCCCCceEEEEec
Confidence 679999987665554433 3322 22223445555554
No 348
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=20.37 E-value=1.6e+02 Score=19.80 Aligned_cols=17 Identities=12% Similarity=0.372 Sum_probs=14.1
Q ss_pred cCCcEEEEEEeCCChhh
Q 031970 18 RGADVFVLAFSLVSRAS 34 (150)
Q Consensus 18 ~~ad~~i~v~d~~~~~s 34 (150)
.++|.+|++=|+.+...
T Consensus 31 ~~~D~vi~~GDl~~~~~ 47 (260)
T 2yvt_A 31 KQPDILVVVGNILKNEA 47 (260)
T ss_dssp HCCSEEEEESCCCCCHH
T ss_pred cCCCEEEECCCCCCccC
Confidence 47899999999998654
No 349
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=20.35 E-value=1.3e+02 Score=19.45 Aligned_cols=38 Identities=18% Similarity=0.076 Sum_probs=24.2
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEee
Q 031970 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~n 60 (150)
.++.||++|...|.-|.-+--++ -|... .++|++++.+
T Consensus 65 ~i~~aD~vvA~l~~~d~Gt~~Ei--G~A~a-----lgkPV~~l~~ 102 (152)
T 4fyk_A 65 WLQQADVVVAEVTQPSLGVGYEL--GRAVA-----LGKPILCLFR 102 (152)
T ss_dssp HHHHCSEEEEECSSCCHHHHHHH--HHHHH-----TTCCEEEEEC
T ss_pred HHHHCCEEEEeCCCCCCCHHHHH--HHHHH-----cCCeEEEEEe
Confidence 46789999998875554444333 23222 2689998876
No 350
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=20.33 E-value=1.5e+02 Score=17.86 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=21.8
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeC
Q 031970 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK 61 (150)
..|++|+=++..+...++- +..+++..++.|+|++...
T Consensus 58 ~~dlvi~D~~l~~~~g~~~-----~~~l~~~~~~~~ii~~s~~ 95 (153)
T 3hv2_A 58 EVDLVISAAHLPQMDGPTL-----LARIHQQYPSTTRILLTGD 95 (153)
T ss_dssp CCSEEEEESCCSSSCHHHH-----HHHHHHHCTTSEEEEECCC
T ss_pred CCCEEEEeCCCCcCcHHHH-----HHHHHhHCCCCeEEEEECC
Confidence 3576666555555444443 3344445567888887653
No 351
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Probab=20.25 E-value=1.2e+02 Score=21.87 Aligned_cols=51 Identities=14% Similarity=0.349 Sum_probs=33.3
Q ss_pred cccccCCcEEEEEEeCCChh--hH-------HHHHHHHHHHHhhhCCCCCEEEEeeCCCc
Q 031970 14 PLSYRGADVFVLAFSLVSRA--SY-------ENVLKKWIPELQHYSPGVPVVLVGTKLDL 64 (150)
Q Consensus 14 ~~~~~~ad~~i~v~d~~~~~--s~-------~~~~~~~~~~i~~~~~~~piilv~nK~D~ 64 (150)
...+++||++|++......+ +- -.+...+.+.+.+.+++.-++++.|=.|.
T Consensus 64 ~~a~~~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNPvd~ 123 (294)
T 1oju_A 64 YSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDV 123 (294)
T ss_dssp GGGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHH
T ss_pred HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcchH
Confidence 45688999999987655321 11 12235667777787778777777776664
Done!