BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031971
(150 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZM74|RN141_CHICK RING finger protein 141 OS=Gallus gallus GN=RNF141 PE=2 SV=1
Length = 230
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 51 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT--- 107
E+EC IC++ ++LP C HS C +C W R +SCP CR + +GD W+ +
Sbjct: 152 EDECCICMDGRVDLILP-CAHSFCQKCIDKWSDRHRSCPVCRRQV--TGAGDSWVVSDAP 208
Query: 108 SEDDIV 113
+EDDI
Sbjct: 209 TEDDIA 214
>sp|Q13064|MKRN3_HUMAN Probable E3 ubiquitin-protein ligase makorin-3 OS=Homo sapiens
GN=MKRN3 PE=1 SV=1
Length = 507
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 16/68 (23%)
Query: 54 CGICLEICCKI---------VLPDCNHSMCMRCYRNWRARSQ-------SCPFCRDSLRR 97
CGIC+E+ + +L +CNHS C+RC R WR+ Q SCP CR +
Sbjct: 311 CGICMEVVYEKANPNDRRFGILSNCNHSFCIRCIRRWRSARQFENRIVKSCPQCRVTSEL 370
Query: 98 VNSGDLWI 105
V + W+
Sbjct: 371 VIPSEFWV 378
>sp|Q2XNS1|RN141_CANFA RING finger protein 141 OS=Canis familiaris GN=RNF141 PE=2 SV=1
Length = 231
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 51 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT--- 107
EEEC IC++ ++LP C HS C +C W R ++CP CR L+ + + W+ +
Sbjct: 153 EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGANESWVVSDAP 209
Query: 108 SEDDIVD 114
+EDD+ +
Sbjct: 210 TEDDMAN 216
>sp|Q32L15|RN141_BOVIN RING finger protein 141 OS=Bos taurus GN=RNF141 PE=2 SV=1
Length = 230
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 51 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT--- 107
EEEC IC++ ++LP C HS C +C W R ++CP CR L+ + + W+ +
Sbjct: 152 EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGANESWVVSDAP 208
Query: 108 SEDDIVD 114
+EDD+ +
Sbjct: 209 TEDDMAN 215
>sp|Q5R7K8|RN141_PONAB RING finger protein 141 OS=Pongo abelii GN=RNF141 PE=2 SV=1
Length = 230
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 51 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT--- 107
EEEC IC++ ++LP C HS C +C W R ++CP CR L+ + + W+ +
Sbjct: 152 EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGANESWVVSDAP 208
Query: 108 SEDDIVD 114
+EDD+ +
Sbjct: 209 TEDDMAN 215
>sp|Q8WVD5|RN141_HUMAN RING finger protein 141 OS=Homo sapiens GN=RNF141 PE=1 SV=1
Length = 230
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 51 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT--- 107
EEEC IC++ ++LP C HS C +C W R ++CP CR L+ + + W+ +
Sbjct: 152 EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGANESWVVSDAP 208
Query: 108 SEDDIVD 114
+EDD+ +
Sbjct: 209 TEDDMAN 215
>sp|Q99MB7|RN141_MOUSE RING finger protein 141 OS=Mus musculus GN=Rnf141 PE=2 SV=2
Length = 230
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 51 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT--- 107
EEEC IC++ ++LP C HS C +C W R ++CP CR L+ + + W+ +
Sbjct: 152 EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGANESWVVSDAP 208
Query: 108 SEDDIVD 114
+EDD+ +
Sbjct: 209 TEDDMAN 215
>sp|Q6IV57|RN141_RAT RING finger protein 141 OS=Rattus norvegicus GN=Rnf141 PE=2 SV=1
Length = 230
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 51 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT--- 107
EEEC IC++ ++LP C HS C +C W R ++CP CR L+ + + W+ +
Sbjct: 152 EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGANESWVVSDAP 208
Query: 108 SEDDIVD 114
+EDD+ +
Sbjct: 209 TEDDMAN 215
>sp|Q60764|MKRN3_MOUSE Probable E3 ubiquitin-protein ligase makorin-3 OS=Mus musculus
GN=Mkrn3 PE=2 SV=2
Length = 544
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 16/68 (23%)
Query: 54 CGICLEICCKIVLPD---------CNHSMCMRCYRNWRARSQ-------SCPFCRDSLRR 97
CGIC+E+ + P CNH+ C+RC R WR+ +Q SCP CR S
Sbjct: 347 CGICMEVVYEKADPSDRRFGILFSCNHTYCLRCIRRWRSATQFENRISKSCPQCRVSSGF 406
Query: 98 VNSGDLWI 105
V + W+
Sbjct: 407 VIPSEFWV 414
>sp|Q6IV56|RN141_DANRE RING finger protein 141 OS=Danio rerio GN=rnf141 PE=2 SV=2
Length = 222
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 51 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSED 110
EEEC IC++ ++LP C HS C +C W +S++CP CR + N + W+ +
Sbjct: 144 EEECCICMDGKADLILP-CAHSFCQKCIDKWSGQSRNCPVCRIQVTAAN--ESWVMSDAP 200
Query: 111 DIVDLAS 117
D+A
Sbjct: 201 TGEDVAG 207
>sp|Q7ZX20|RNF8A_XENLA E3 ubiquitin-protein ligase RNF8-A OS=Xenopus laevis GN=rnf8-a PE=2
SV=1
Length = 540
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 12/146 (8%)
Query: 11 QLQRGITDVE---DKKQKEICDAKYKKKGRMDKGK--LSEID--IEREEECGICLEICCK 63
+L R D E + K KE+ + K +K+ + + L+ ++ ++ E +C IC E +
Sbjct: 332 ELNRSKNDFEQIIEAKNKELQETKEEKEKVFAQKEEVLNHMNDVLDNELQCIICSEHFIE 391
Query: 64 IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENL 123
V +C HS C C ++W+ R + CP CR + + L + D +VD S +N
Sbjct: 392 AVTLNCAHSFCSYCIKSWKKRKEECPICRQEI-VTETRSLVLDNCIDSMVDKLSPEMKN- 449
Query: 124 KRLFMYIDKLPFIT---PNPTLVSYD 146
+R + +++ + NP LV D
Sbjct: 450 RRAALILERKEMVQAEESNPVLVVSD 475
>sp|Q803C1|RNF8_DANRE E3 ubiquitin-protein ligase RNF8 OS=Danio rerio GN=rnf8 PE=2 SV=1
Length = 485
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 5 IFPSLLQLQRGITDVEDKKQKEI-CDAKYKKKGRMDK----GKLSEIDIEREEECGICLE 59
+ L +G +V K KE+ + K+K + K +++E+ +E E +C IC E
Sbjct: 339 VIEELKHAWQGFKEVLQAKDKELEVTKEEKEKAKAQKEEVVTQMTEV-LESELQCSICSE 397
Query: 60 ICCKIVLPDCNHSMCMRCYRNWRARSQSCPFC 91
+ + V +C HS C C WR R CP C
Sbjct: 398 LFIEAVTLNCAHSFCQHCISEWRNRKDKCPMC 429
>sp|Q13434|MKRN4_HUMAN Putative E3 ubiquitin-protein ligase makorin-4 OS=Homo sapiens
GN=MKRN4P PE=5 SV=1
Length = 485
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 16/77 (20%)
Query: 50 REEECGICLEICCKI---------VLPDCNHSMCMRCYRNWRARSQ-------SCPFCRD 93
+++ CGIC+E+ + +L +CNH+ C++C R WR+ + SCP CR
Sbjct: 312 KDKVCGICMEVVYEKANPNEHRFGILSNCNHTFCLKCIRKWRSAKEFESRIVKSCPQCRI 371
Query: 94 SLRRVNSGDLWIYTSED 110
+ V + W+ E+
Sbjct: 372 TSNFVIPSEYWVEEKEE 388
>sp|Q6NRG0|RNF8B_XENLA E3 ubiquitin-protein ligase RNF8-B OS=Xenopus laevis GN=rnf8-b PE=2
SV=1
Length = 532
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 48 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT 107
++ E +C IC E + V +C HS C C ++WR R + CP CR + + L +
Sbjct: 371 LDNELQCIICSEHFIEAVTLNCAHSFCSYCIKSWRKRKEECPICRQEILS-ETRSLVLDN 429
Query: 108 SEDDIVDLASISRENLKRLFMYIDKLPFITP---NPTLVSYD 146
D +VD S +N +R + +++ + NP LV D
Sbjct: 430 CIDSMVDKLSPEMKN-RRAALILERKEMVQAEESNPVLVVSD 470
>sp|E0X9N4|C3H69_ARATH Zinc finger CCCH domain-containing protein 69 OS=Arabidopsis
thaliana GN=At3g63550 PE=3 SV=1
Length = 350
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 34/143 (23%)
Query: 20 EDKKQKEICDAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLP---------DCN 70
E ++ K++C+ K+K+ L + + +E EC +CLE P +C+
Sbjct: 172 EREEHKKVCEKKHKQ--------LEALKLSQEIECCVCLERVLSKATPAERKFGLLTECD 223
Query: 71 HSMCMRCYRNWRARSQS-----------CPFCRDSLRRVNSGDLWIYTSEDDIVDLASIS 119
H+ C+ C RNWR+ S S CP CR V +W +++ ++ ++
Sbjct: 224 HAFCIACIRNWRSSSPSTGMDVNSTLRACPICRKLSYFVVPSVIW-FSAPEEKKEIMDNY 282
Query: 120 RENLKRL----FMYID-KLPFIT 137
RE L+ + F + D PF T
Sbjct: 283 REKLRSIDCKHFSFGDGNCPFGT 305
>sp|Q9UHC7|MKRN1_HUMAN E3 ubiquitin-protein ligase makorin-1 OS=Homo sapiens GN=MKRN1 PE=1
SV=3
Length = 482
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 16/73 (21%)
Query: 54 CGICLEICCK---------IVLPDCNHSMCMRCYRNWRARSQ-------SCPFCRDSLRR 97
CGIC+E+ + +L +CNH+ C++C R WR+ Q SCP CR +
Sbjct: 281 CGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 340
Query: 98 VNSGDLWIYTSED 110
V + W+ E+
Sbjct: 341 VIPSEYWVEEKEE 353
>sp|Q9QXP6|MKRN1_MOUSE E3 ubiquitin-protein ligase makorin-1 OS=Mus musculus GN=Mkrn1 PE=2
SV=1
Length = 481
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 16/73 (21%)
Query: 54 CGICLEICCK---------IVLPDCNHSMCMRCYRNWRARSQ-------SCPFCRDSLRR 97
CGIC+E+ + +L +CNH+ C++C R WR+ Q SCP CR +
Sbjct: 281 CGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 340
Query: 98 VNSGDLWIYTSED 110
V + W+ E+
Sbjct: 341 VIPSEYWVEEKEE 353
>sp|Q9TT91|MKRN1_MACEU E3 ubiquitin-protein ligase makorin-1 OS=Macropus eugenii GN=MKRN1
PE=2 SV=1
Length = 478
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 16/73 (21%)
Query: 54 CGICLEICCK---------IVLPDCNHSMCMRCYRNWRARSQ-------SCPFCRDSLRR 97
CGIC+E+ + +L +CNH+ C++C R WR+ Q SCP CR +
Sbjct: 277 CGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 336
Query: 98 VNSGDLWIYTSED 110
V + W+ E+
Sbjct: 337 VIPSEYWVEEKEE 349
>sp|Q8IYW5|RN168_HUMAN E3 ubiquitin-protein ligase RNF168 OS=Homo sapiens GN=RNF168 PE=1
SV=1
Length = 571
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 5/64 (7%)
Query: 53 ECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQ-SCPFCRDSLRRVNSGDLWIYTSEDD 111
+CGIC+EI + V CNH++C C+++ ++ CPFCR RRV+S + +T +
Sbjct: 15 QCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCR---RRVSSWTRY-HTRRNS 70
Query: 112 IVDL 115
+V++
Sbjct: 71 LVNV 74
>sp|Q80XJ2|RN168_MOUSE E3 ubiquitin-protein ligase RNF168 OS=Mus musculus GN=Rnf168 PE=2
SV=3
Length = 565
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 53 ECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQS-CPFCRDSLRRVNS 100
+CGIC+EI + V CNH++C C+++ ++ CPFCR RRV+S
Sbjct: 15 QCGICMEILLEPVTLPCNHTLCNPCFQSTVEKANLCCPFCR---RRVSS 60
>sp|Q4SRI6|MKRN1_TETNG Probable E3 ubiquitin-protein ligase makorin-1 OS=Tetraodon
nigroviridis GN=mkrn1 PE=3 SV=1
Length = 372
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 16/73 (21%)
Query: 54 CGICLEICCK---------IVLPDCNHSMCMRCYRNWRARSQ-------SCPFCRDSLRR 97
CG+C+E+ + +L +CNH C++C R WR+ Q SCP CR +
Sbjct: 226 CGVCMEVVFEKANPSERRFGILSNCNHCYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 285
Query: 98 VNSGDLWIYTSED 110
V + W+ ED
Sbjct: 286 VIPSEYWVEDKED 298
>sp|B2RYR0|RN168_RAT E3 ubiquitin-protein ligase RNF168 OS=Rattus norvegicus GN=Rnf168
PE=2 SV=1
Length = 564
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 53 ECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQ-SCPFCRDSLRRVNS 100
+CGIC+EI + V CNH++C C+++ ++ CPFCR RRV+S
Sbjct: 15 QCGICMEILVEPVTLPCNHTLCNPCFQSTVEKANLCCPFCR---RRVSS 60
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 48 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 95
I++ EC IC E + C H+ C C NW S+SCP CR L
Sbjct: 79 IKKTLECPICTEALQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQKL 126
>sp|Q9UTL9|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC144.05 PE=3 SV=1
Length = 1375
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 42/94 (44%)
Query: 7 PSLLQLQRGITDVEDKKQKEICDAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVL 66
P + L R + + + Q++I + +++ + + + E + C IC +I + +
Sbjct: 1045 PGHIHLLRELEEEKSNTQRKIAHFESRRRYLTNLYEHIVLKAESHQICIICRDIIKQGFI 1104
Query: 67 PDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNS 100
C H C C W S SCP C+ L + N+
Sbjct: 1105 TTCGHLYCSFCLEAWLKHSSSCPMCKTKLNKNNA 1138
>sp|Q2HJ46|RNF8_BOVIN E3 ubiquitin-protein ligase RNF8 OS=Bos taurus GN=RNF8 PE=2 SV=1
Length = 487
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 15 GITDVEDKKQKEICDAKYKKKGRMDKGKLSEID--IEREEECGICLEICCKIVLPDCNHS 72
I +DK+ ++ + K K + + ++ LS ++ +E E +C IC E + V +C HS
Sbjct: 365 AIIQAKDKELEQTKEEKEKVQAQKEE-VLSHMNDVLENELQCIICSEYFVEAVTLNCAHS 423
Query: 73 MCMRCYRNWRARSQSCPFCRDSLR 96
C C W R CP CR ++
Sbjct: 424 FCSYCINEWMKRKVECPICRKDIK 447
>sp|Q6GLT5|MKRN1_XENLA Probable E3 ubiquitin-protein ligase makorin-1 OS=Xenopus laevis
GN=mkrn1 PE=2 SV=1
Length = 408
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 16/73 (21%)
Query: 54 CGICLEICCK---------IVLPDCNHSMCMRCYRNWRARSQ-------SCPFCRDSLRR 97
CGIC+E+ + +L +C+HS C++C R WR+ Q SCP CR +
Sbjct: 247 CGICMEVVYEKTNPSERRFGILSNCSHSYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 306
Query: 98 VNSGDLWIYTSED 110
+ + W+ E+
Sbjct: 307 IIPSEYWVEEKEE 319
>sp|Q5NU14|MKRN1_TAKRU Probable E3 ubiquitin-protein ligase makorin-1 OS=Takifugu rubripes
GN=mkrn1 PE=2 SV=1
Length = 429
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 16/73 (21%)
Query: 54 CGICLEICCK---------IVLPDCNHSMCMRCYRNWRARSQ-------SCPFCRDSLRR 97
CG+C+E+ + +L +C+H C++C R WR+ Q SCP CR +
Sbjct: 226 CGVCMEVVFEKANPSERRFGILSNCSHCYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 285
Query: 98 VNSGDLWIYTSED 110
V + W+ ED
Sbjct: 286 VIPSEYWVEDKED 298
>sp|Q6P256|CHFR_XENTR E3 ubiquitin-protein ligase CHFR OS=Xenopus tropicalis GN=chfr PE=2
SV=1
Length = 626
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 35 KGRMDKGKLSEIDIEREEE---CGICLEICCKIV-LPDCNHSMCMRCYRNWRARSQSCPF 90
KG D+ K + ++ EE C IC E+ V L C H+ C CY W RS CP
Sbjct: 245 KGASDESKTPSMKPDKMEETLTCIICQELLHDCVSLQPCMHTFCAACYSGWMERSSLCPT 304
Query: 91 CRDSLRRV 98
CR + R+
Sbjct: 305 CRCPVERI 312
>sp|Q1L5Z9|LONF2_HUMAN LON peptidase N-terminal domain and RING finger protein 2 OS=Homo
sapiens GN=LONRF2 PE=2 SV=3
Length = 754
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 17/115 (14%)
Query: 53 ECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR----------VNSGD 102
EC +C+ + + V C H+ C++C + CP C+D L V + +
Sbjct: 448 ECALCMRLLFEPVTTPCGHTFCLKCLERCLDHAPHCPLCKDKLSELLASRNFNITVLAEE 507
Query: 103 LWIYTSEDDIVDLASISRENLKRLF-------MYIDKLPFITPNPTLVSYDPRYR 150
L D++ D I E + L +++ + F T L ++PRYR
Sbjct: 508 LIFRYLPDELSDRKRIYDEEMSELSNLTRDVPIFVCAMAFPTVPCPLHVFEPRYR 562
>sp|Q5D7I6|TRIM5_ALOSA Tripartite motif-containing protein 5 OS=Alouatta sara GN=TRIM5
PE=3 SV=1
Length = 551
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 46 IDIEREEECGICLEICCKIVLPDCNHSMCMRC--YRNWRARSQSCPFCRDSLRRVN 99
++I+ E C ICLE+ + + DC HS C C + +R +SCP CR S N
Sbjct: 7 VNIKEEVTCPICLELLTEPLSLDCGHSFCQACITANHKESRERSCPLCRVSYHSEN 62
>sp|O76064|RNF8_HUMAN E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens GN=RNF8 PE=1 SV=1
Length = 485
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 11 QLQRGITDVE---DKKQKEICDAKYKKKGRMDKGK---LSEID--IEREEECGICLEICC 62
+L R D E K KE+ K +K+ +M K LS ++ +E E +C IC E
Sbjct: 353 ELNRSKKDFEAIIQAKNKELEQTKEEKE-KMQAQKEEVLSHMNDVLENELQCIICSEYFI 411
Query: 63 KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96
+ V +C HS C C W R CP CR ++
Sbjct: 412 EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 445
>sp|Q9LZV8|ATL74_ARATH RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2
SV=1
Length = 159
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 53 ECGICLEICCKI----VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVN 99
EC ICL VLP CNHS M C W SCP CR SL V+
Sbjct: 104 ECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIEVH 154
>sp|Q5R4I2|RNF8_PONAB E3 ubiquitin-protein ligase RNF8 OS=Pongo abelii GN=RNF8 PE=2 SV=1
Length = 486
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 48 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96
+E E +C IC E + V +C HS C C W R CP CR ++
Sbjct: 398 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 446
>sp|Q9SG96|ATL72_ARATH RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2
SV=1
Length = 181
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 50 REEECGICL---EICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWI 105
+ EC ICL E K+ VLP CNH +RC W SCP CR SL + +
Sbjct: 110 KATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQPSPMAV 169
Query: 106 YTSEDDIV 113
++D+V
Sbjct: 170 SRRDEDMV 177
>sp|Q5NCC9|TRI58_MOUSE Tripartite motif-containing protein 58 OS=Mus musculus GN=Trim58
PE=2 SV=1
Length = 485
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 48 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQS------CPFCRDSLR 96
++ E C +CL+ + + DC HS C+RC + +S S CP CR R
Sbjct: 9 LQEEARCSVCLDFLQEPISVDCGHSFCLRCISEFCEKSDSAQGVYACPQCRGPFR 63
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 46 IDIEREEECGICLEICCKI----VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVN 99
I +E+ +C +CL +LP C+H+ + C W + +CP CR SL N
Sbjct: 199 ISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSLSTSN 256
>sp|Q7YR34|TRI26_PANTR Tripartite motif-containing protein 26 OS=Pan troglodytes GN=TRIM26
PE=3 SV=1
Length = 539
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 48 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQS---CPFCRDSLRRVNSGDLW 104
+E E C ICL+ V DC H C C + R S S CP C+ ++ N +W
Sbjct: 10 LEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKPFKKENIRPVW 69
Query: 105 IYTSEDDIVDLASISRENLKRL 126
LAS+ EN++RL
Sbjct: 70 ---------QLASLV-ENIERL 81
>sp|Q12899|TRI26_HUMAN Tripartite motif-containing protein 26 OS=Homo sapiens GN=TRIM26
PE=2 SV=1
Length = 539
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 48 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQS---CPFCRDSLRRVNSGDLW 104
+E E C ICL+ V DC H C C + R S S CP C+ ++ N +W
Sbjct: 10 LEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKPFKKENIRPVW 69
Query: 105 IYTSEDDIVDLASISRENLKRL 126
LAS+ EN++RL
Sbjct: 70 ---------QLASLV-ENIERL 81
>sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 2
OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1
Length = 1029
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 43 LSEIDIEREEECGICLEICCKIVLPDCNHSMCMRC-YRNWR-ARSQSCPFCRDSLRR 97
+ E+ + EC ICLE VL C H +C C +WR + S CP CR+++ +
Sbjct: 783 VEELRKGEQGECPICLEALEDAVLTPCAHRLCRECLLASWRNSTSGLCPVCRNTVSK 839
>sp|Q8VC56|RNF8_MOUSE E3 ubiquitin-protein ligase RNF8 OS=Mus musculus GN=Rnf8 PE=1 SV=1
Length = 488
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 48 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR-RVNS 100
+E E +C IC E + V +C HS C C W R CP CR + R NS
Sbjct: 400 LENELQCIICSEYFIEAVTLNCAHSFCSFCINEWMKRKVECPICRKDIESRTNS 453
>sp|Q5FWP4|CHFR_XENLA E3 ubiquitin-protein ligase CHFR OS=Xenopus laevis GN=chfr PE=1
SV=1
Length = 625
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 36 GRMDKGKLSEIDIEREEE---CGICLEICCKIV-LPDCNHSMCMRCYRNWRARSQSCPFC 91
G D+ K + ++ EE C IC E+ V L C H+ C CY W RS CP C
Sbjct: 245 GASDESKTPSMKPDKMEETLTCIICQELLHDCVSLQPCMHTFCAACYSGWMERSSLCPTC 304
Query: 92 RDSLRRV 98
R + R+
Sbjct: 305 RCPVERI 311
>sp|Q4KLN8|RNF8_RAT E3 ubiquitin-protein ligase RNF8 OS=Rattus norvegicus GN=Rnf8 PE=2
SV=1
Length = 487
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 48 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR-RVNS 100
+E E +C IC E + V +C HS C C W R CP CR + R NS
Sbjct: 399 LENELQCIICSEYFIEAVTLNCAHSFCSFCISEWMKRKVECPICRKDIESRTNS 452
>sp|Q8JFF3|MKRN1_SERQU Probable E3 ubiquitin-protein ligase makorin-1 OS=Seriola
quinqueradiata GN=mkrn1 PE=2 SV=1
Length = 435
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 16/73 (21%)
Query: 54 CGICLEICCK---------IVLPDCNHSMCMRCYRNWRARSQ-------SCPFCRDSLRR 97
CG+C+E+ + +L +C+H C++C R WR+ Q SCP CR +
Sbjct: 228 CGVCMEVVFEKANPSERRFGILSNCSHCYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 287
Query: 98 VNSGDLWIYTSED 110
V + W+ +D
Sbjct: 288 VIPSEYWVEDKDD 300
>sp|P22682|CBL_MOUSE E3 ubiquitin-protein ligase CBL OS=Mus musculus GN=Cbl PE=1 SV=3
Length = 913
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 54 CGICLEICCKIVLPDCNHSMCMRCYRNWR-ARSQSCPFCRDSLR 96
C IC E + + C H MC C +W+ + Q CPFCR ++
Sbjct: 379 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 422
>sp|Q5ZA07|C3H41_ORYSJ E3 ubiquitin-protein ligase makorin OS=Oryza sativa subsp. japonica
GN=MKRN PE=2 SV=1
Length = 368
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 30/119 (25%)
Query: 26 EICDAKYKKKGRMDKGKLSEIDIEREE--------ECGICLEICCK---------IVLPD 68
++C Y+ R + KL E + +R E EC +CL+ +L +
Sbjct: 180 KMCLHPYRPDEREEHTKLCEKNHKRLESLKRSQEIECSVCLDRVLSKPTAAERKFGLLSE 239
Query: 69 CNHSMCMRCYRNWRARS-----------QSCPFCRDSLRRVNSGDLWIYTSED--DIVD 114
C+H C+ C RNWR S ++CP CR V LW ++ E+ +I+D
Sbjct: 240 CDHPFCISCIRNWRNNSPTSGMDVNSALRACPICRKLSYYVIPSVLWYFSKEEKLEIID 298
>sp|P38239|YBR2_YEAST Uncharacterized RING finger protein YBR062C OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YBR062C PE=1
SV=2
Length = 180
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Query: 37 RMDKGKLSEIDIEREEECGICL------EICCKIVLPDCNHSMCMRCYRNWRARSQSCPF 90
R++K KL D C IC E + LP C+H + C W +RS +CP
Sbjct: 97 RINKKKLKATD-----NCSICYTNYLEDEYPLVVELPHCHHKFDLECLSVWLSRSTTCPL 151
Query: 91 CRDSL 95
CRD++
Sbjct: 152 CRDNV 156
>sp|Q65XV2|XB3_ORYSJ E3 ubiquitin-protein ligase XB3 OS=Oryza sativa subsp. japonica
GN=XB3 PE=1 SV=1
Length = 450
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 16/103 (15%)
Query: 12 LQRGITDVEDKKQKEICDA-KYK----KKGRMDKGKLSEIDIEREEECGICLEICCKIVL 66
L+ + + +++K+I + KY G + ++ E C IC + C I +
Sbjct: 276 LEAALMEANREREKKILNGTKYSLPSPSPGDDSADDDACSEVSDTELCCICFDQACTIEV 335
Query: 67 PDCNHSMCMRCY-----------RNWRARSQSCPFCRDSLRRV 98
DC H MC C S +CPFCR S+ R+
Sbjct: 336 QDCGHQMCAPCTLALCCHNKPNPTTLTPPSPACPFCRGSISRL 378
>sp|P0C775|P28_VACC8 E3 ubiquitin-protein ligase p28-like OS=Vaccinia virus (strain
LC16m8) GN=p28 PE=3 SV=1
Length = 239
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 15/72 (20%)
Query: 48 IEREEECGICLEICCKI---------VLPDCNHSMCMRCYRNWR------ARSQSCPFCR 92
+ +E+ECGIC E+ +L CNH C+ C W S +CP CR
Sbjct: 164 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHKTRRETGASDNCPICR 223
Query: 93 DSLRRVNSGDLW 104
R + +
Sbjct: 224 TRFRNITMSKFY 235
>sp|Q49PZ0|P28_VACC0 E3 ubiquitin ligase p28-like OS=Vaccinia virus (strain LC16m0)
GN=p28 PE=3 SV=1
Length = 239
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 15/72 (20%)
Query: 48 IEREEECGICLEICCKI---------VLPDCNHSMCMRCYRNWR------ARSQSCPFCR 92
+ +E+ECGIC E+ +L CNH C+ C W S +CP CR
Sbjct: 164 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHKTRRETGASDNCPICR 223
Query: 93 DSLRRVNSGDLW 104
R + +
Sbjct: 224 TRFRNITMSKFY 235
>sp|Q9XF63|ATL3_ARATH RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2
SV=1
Length = 324
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 53 ECGICLEICCKI----VLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 95
EC ICL K +LP CNHS + C W +CP CR+++
Sbjct: 126 ECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTV 172
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,025,482
Number of Sequences: 539616
Number of extensions: 2178548
Number of successful extensions: 9642
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 383
Number of HSP's that attempted gapping in prelim test: 9076
Number of HSP's gapped (non-prelim): 827
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)