Query 031971
Match_columns 150
No_of_seqs 199 out of 1486
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 07:52:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031971.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031971hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15227 zf-C3HC4_4: zinc fing 99.4 5.4E-14 1.2E-18 79.9 2.8 38 54-91 1-42 (42)
2 PLN03208 E3 ubiquitin-protein 99.4 3.8E-13 8.2E-18 99.1 4.0 53 45-97 12-80 (193)
3 PF13920 zf-C3HC4_3: Zinc fing 99.3 8.8E-13 1.9E-17 77.6 2.8 47 51-97 2-49 (50)
4 PF13923 zf-C3HC4_2: Zinc fing 99.3 1.2E-12 2.6E-17 73.2 2.6 38 54-91 1-39 (39)
5 PF13639 zf-RING_2: Ring finge 99.3 7.8E-13 1.7E-17 75.8 1.7 40 53-92 2-44 (44)
6 PHA02929 N1R/p28-like protein; 99.3 2.2E-12 4.8E-17 98.5 3.6 51 49-99 172-230 (238)
7 smart00504 Ubox Modified RING 99.3 3.7E-12 8E-17 78.1 3.9 46 51-96 1-46 (63)
8 TIGR00599 rad18 DNA repair pro 99.3 4.3E-12 9.4E-17 103.2 5.4 69 46-117 21-89 (397)
9 KOG0287 Postreplication repair 99.2 6.9E-12 1.5E-16 98.8 3.3 85 48-138 20-104 (442)
10 KOG0317 Predicted E3 ubiquitin 99.2 9.4E-12 2E-16 96.1 3.6 49 49-97 237-285 (293)
11 KOG0823 Predicted E3 ubiquitin 99.2 1.1E-11 2.4E-16 93.1 2.5 48 49-96 45-95 (230)
12 PF00097 zf-C3HC4: Zinc finger 99.1 2.8E-11 6E-16 68.1 2.8 38 54-91 1-41 (41)
13 PHA02926 zinc finger-like prot 99.1 3.9E-11 8.4E-16 89.8 3.2 54 49-102 168-236 (242)
14 KOG0320 Predicted E3 ubiquitin 99.1 3.5E-11 7.7E-16 87.0 2.4 50 49-98 129-180 (187)
15 COG5432 RAD18 RING-finger-cont 99.1 7.1E-11 1.5E-15 91.5 3.7 79 48-132 22-100 (391)
16 cd00162 RING RING-finger (Real 99.1 1.3E-10 2.8E-15 65.7 3.1 42 53-94 1-44 (45)
17 PF12678 zf-rbx1: RING-H2 zinc 99.0 1.7E-10 3.6E-15 73.2 2.9 42 51-92 19-73 (73)
18 KOG4628 Predicted E3 ubiquitin 99.0 4.2E-10 9E-15 89.9 5.1 69 29-98 208-280 (348)
19 PF04564 U-box: U-box domain; 99.0 2.3E-10 4.9E-15 72.5 2.8 62 50-114 3-65 (73)
20 smart00184 RING Ring finger. E 99.0 5.9E-10 1.3E-14 60.8 3.0 38 54-91 1-39 (39)
21 COG5243 HRD1 HRD ubiquitin lig 98.9 4.8E-10 1E-14 89.4 3.3 47 49-95 285-344 (491)
22 PF14634 zf-RING_5: zinc-RING 98.9 6E-10 1.3E-14 63.8 2.8 41 53-93 1-44 (44)
23 PF13445 zf-RING_UBOX: RING-ty 98.9 6.6E-10 1.4E-14 63.2 2.2 35 54-89 1-43 (43)
24 KOG2164 Predicted E3 ubiquitin 98.9 9.8E-10 2.1E-14 90.7 2.6 48 51-98 186-238 (513)
25 PF14835 zf-RING_6: zf-RING of 98.9 2.3E-10 5E-15 69.7 -1.1 59 49-112 5-64 (65)
26 KOG1039 Predicted E3 ubiquitin 98.8 3.9E-09 8.4E-14 84.6 4.1 95 45-139 155-264 (344)
27 COG5574 PEX10 RING-finger-cont 98.8 3.9E-09 8.5E-14 80.8 3.0 48 49-96 213-262 (271)
28 KOG2177 Predicted E3 ubiquitin 98.7 5.2E-09 1.1E-13 80.6 2.0 46 48-93 10-55 (386)
29 KOG2660 Locus-specific chromos 98.7 1.6E-08 3.5E-13 79.6 3.5 91 48-138 12-107 (331)
30 TIGR00570 cdk7 CDK-activating 98.6 6.1E-08 1.3E-12 76.5 6.2 49 50-98 2-56 (309)
31 PF12861 zf-Apc11: Anaphase-pr 98.6 2.8E-08 6E-13 64.2 3.0 48 49-96 19-82 (85)
32 KOG0978 E3 ubiquitin ligase in 98.6 1.7E-08 3.6E-13 86.8 1.3 50 49-98 641-691 (698)
33 KOG0802 E3 ubiquitin ligase [P 98.6 2.4E-08 5.2E-13 85.0 1.8 47 49-95 289-340 (543)
34 COG5540 RING-finger-containing 98.5 4.6E-08 1E-12 76.4 2.6 47 50-96 322-372 (374)
35 KOG1002 Nucleotide excision re 98.5 3.6E-08 7.9E-13 82.0 1.0 81 2-96 501-586 (791)
36 KOG4172 Predicted E3 ubiquitin 98.4 5.7E-08 1.2E-12 57.2 0.4 45 52-96 8-54 (62)
37 KOG0824 Predicted E3 ubiquitin 98.4 2E-07 4.3E-12 72.8 2.4 48 50-97 6-54 (324)
38 KOG4159 Predicted E3 ubiquitin 98.3 3.3E-07 7.2E-12 74.9 2.7 52 46-97 79-130 (398)
39 KOG0311 Predicted E3 ubiquitin 98.3 1.3E-07 2.8E-12 75.2 -0.1 60 48-109 40-101 (381)
40 COG5152 Uncharacterized conser 98.2 6.2E-07 1.4E-11 66.3 2.5 61 51-115 196-256 (259)
41 KOG4265 Predicted E3 ubiquitin 98.1 2.1E-06 4.6E-11 68.5 2.7 49 49-97 288-337 (349)
42 KOG0804 Cytoplasmic Zn-finger 98.0 4.2E-06 9E-11 68.6 2.7 51 44-96 168-222 (493)
43 KOG1734 Predicted RING-contain 98.0 8.4E-06 1.8E-10 63.0 3.9 48 49-96 222-281 (328)
44 KOG0297 TNF receptor-associate 98.0 4.3E-06 9.3E-11 68.6 2.5 50 48-97 18-68 (391)
45 PF11789 zf-Nse: Zinc-finger o 97.9 6.1E-06 1.3E-10 49.7 2.1 42 49-90 9-53 (57)
46 COG5194 APC11 Component of SCF 97.9 5.9E-06 1.3E-10 52.4 2.0 46 51-96 20-81 (88)
47 KOG1813 Predicted E3 ubiquitin 97.9 4.7E-06 1E-10 65.0 1.7 47 50-96 240-286 (313)
48 KOG2879 Predicted E3 ubiquitin 97.8 2.1E-05 4.6E-10 60.9 3.4 56 41-96 229-287 (298)
49 KOG4692 Predicted E3 ubiquitin 97.7 3E-05 6.5E-10 62.1 3.6 48 49-96 420-467 (489)
50 KOG1493 Anaphase-promoting com 97.7 7.7E-06 1.7E-10 51.5 -0.1 47 50-96 19-81 (84)
51 KOG0828 Predicted E3 ubiquitin 97.7 1.7E-05 3.6E-10 65.9 1.8 48 49-96 569-634 (636)
52 PF11793 FANCL_C: FANCL C-term 97.7 7.1E-06 1.5E-10 51.4 -0.5 46 51-96 2-66 (70)
53 KOG1785 Tyrosine kinase negati 97.7 1.7E-05 3.7E-10 64.4 1.5 46 51-96 369-416 (563)
54 KOG4275 Predicted E3 ubiquitin 97.7 1.7E-05 3.7E-10 61.9 1.4 44 50-97 299-343 (350)
55 smart00744 RINGv The RING-vari 97.5 8.6E-05 1.9E-09 43.3 2.6 40 53-92 1-49 (49)
56 COG5219 Uncharacterized conser 97.5 4.7E-05 1E-09 67.6 1.4 52 45-96 1463-1523(1525)
57 KOG1571 Predicted E3 ubiquitin 97.3 0.00026 5.5E-09 56.8 4.1 47 48-97 302-348 (355)
58 KOG0825 PHD Zn-finger protein 97.3 5.7E-05 1.2E-09 65.8 -0.1 53 50-102 122-177 (1134)
59 COG5222 Uncharacterized conser 97.2 0.00016 3.4E-09 56.9 1.9 43 51-93 274-318 (427)
60 KOG2930 SCF ubiquitin ligase, 97.2 0.00015 3.3E-09 48.3 1.6 46 50-95 45-107 (114)
61 PHA03096 p28-like protein; Pro 97.2 0.00048 1E-08 54.3 4.3 68 15-95 154-233 (284)
62 KOG1645 RING-finger-containing 97.2 0.00025 5.4E-09 57.8 2.3 47 50-96 3-56 (463)
63 KOG0827 Predicted E3 ubiquitin 97.0 0.00034 7.5E-09 56.7 2.0 44 52-95 5-55 (465)
64 PF14447 Prok-RING_4: Prokaryo 96.9 0.00045 9.8E-09 40.9 1.3 46 50-97 6-51 (55)
65 KOG4367 Predicted Zn-finger pr 96.8 0.00064 1.4E-08 56.1 1.9 35 49-83 2-36 (699)
66 KOG1001 Helicase-like transcri 96.7 0.00029 6.3E-09 61.5 -0.7 45 52-97 455-501 (674)
67 KOG4185 Predicted E3 ubiquitin 96.7 0.00082 1.8E-08 53.0 1.9 45 51-95 3-54 (296)
68 KOG4739 Uncharacterized protei 96.7 0.0012 2.6E-08 50.4 2.4 43 53-97 5-49 (233)
69 COG5236 Uncharacterized conser 96.6 0.0019 4E-08 52.0 2.9 48 49-96 59-108 (493)
70 PF07800 DUF1644: Protein of u 96.4 0.0068 1.5E-07 43.6 4.7 88 50-142 1-141 (162)
71 PF14570 zf-RING_4: RING/Ubox 96.4 0.0033 7.1E-08 36.4 2.5 42 54-95 1-47 (48)
72 KOG1814 Predicted E3 ubiquitin 96.3 0.0063 1.4E-07 49.8 4.7 46 49-94 182-238 (445)
73 KOG2114 Vacuolar assembly/sort 96.3 0.0028 6.1E-08 56.0 2.7 43 50-95 839-882 (933)
74 PF10367 Vps39_2: Vacuolar sor 96.3 0.0018 3.9E-08 43.2 1.1 37 43-79 70-108 (109)
75 KOG3800 Predicted E3 ubiquitin 96.1 0.0086 1.9E-07 47.0 4.1 44 53-96 2-51 (300)
76 KOG4445 Uncharacterized conser 95.9 0.0095 2.1E-07 47.1 3.8 48 49-96 113-186 (368)
77 PF04641 Rtf2: Rtf2 RING-finge 95.8 0.011 2.4E-07 46.0 3.8 50 48-98 110-163 (260)
78 PF05290 Baculo_IE-1: Baculovi 95.8 0.016 3.6E-07 40.5 4.1 48 50-97 79-133 (140)
79 KOG1941 Acetylcholine receptor 95.7 0.0041 8.8E-08 50.8 1.0 47 49-95 363-415 (518)
80 KOG0826 Predicted E3 ubiquitin 95.6 0.0084 1.8E-07 47.8 2.4 46 50-95 299-345 (357)
81 KOG3039 Uncharacterized conser 95.6 0.011 2.4E-07 45.5 2.9 49 50-98 220-272 (303)
82 PF03854 zf-P11: P-11 zinc fin 95.2 0.0084 1.8E-07 34.4 0.8 42 54-97 5-47 (50)
83 PF08746 zf-RING-like: RING-li 95.0 0.032 6.9E-07 31.5 2.8 38 54-91 1-43 (43)
84 KOG1428 Inhibitor of type V ad 94.6 0.033 7.3E-07 52.4 3.5 50 49-98 3484-3546(3738)
85 KOG3268 Predicted E3 ubiquitin 94.6 0.028 6E-07 41.4 2.4 47 51-97 165-229 (234)
86 KOG0298 DEAD box-containing he 94.5 0.0095 2.1E-07 54.9 -0.3 47 48-94 1150-1197(1394)
87 KOG4362 Transcriptional regula 94.4 0.0095 2.1E-07 51.8 -0.4 50 49-98 19-71 (684)
88 PHA02825 LAP/PHD finger-like p 94.2 0.066 1.4E-06 38.6 3.6 47 49-96 6-59 (162)
89 PF05883 Baculo_RING: Baculovi 94.1 0.017 3.7E-07 40.5 0.5 33 51-83 26-67 (134)
90 KOG2817 Predicted E3 ubiquitin 94.0 0.048 1E-06 44.6 2.8 47 49-95 332-384 (394)
91 KOG3002 Zn finger protein [Gen 94.0 0.037 8E-07 44.1 2.1 45 49-96 46-91 (299)
92 PHA02862 5L protein; Provision 93.8 0.065 1.4E-06 38.1 2.9 45 51-96 2-53 (156)
93 KOG1940 Zn-finger protein [Gen 93.4 0.051 1.1E-06 42.7 1.9 43 51-93 158-204 (276)
94 KOG1100 Predicted E3 ubiquitin 93.3 0.038 8.3E-07 41.7 1.1 39 54-96 161-200 (207)
95 PF02891 zf-MIZ: MIZ/SP-RING z 93.1 0.042 9.2E-07 32.0 0.9 43 51-94 2-50 (50)
96 KOG3161 Predicted E3 ubiquitin 92.9 0.038 8.3E-07 47.9 0.7 40 48-89 8-51 (861)
97 COG5175 MOT2 Transcriptional r 92.6 0.15 3.2E-06 41.2 3.5 49 50-98 13-66 (480)
98 PF10272 Tmpp129: Putative tra 92.2 0.31 6.7E-06 39.8 5.0 26 71-96 313-351 (358)
99 PF12906 RINGv: RING-variant d 92.0 0.09 1.9E-06 30.1 1.3 38 54-91 1-47 (47)
100 KOG3970 Predicted E3 ubiquitin 92.0 0.14 3E-06 39.1 2.6 48 49-96 48-105 (299)
101 KOG1952 Transcription factor N 91.3 0.15 3.3E-06 45.4 2.6 47 49-95 189-246 (950)
102 KOG2932 E3 ubiquitin ligase in 91.1 0.076 1.6E-06 42.3 0.4 45 51-97 90-135 (389)
103 KOG3039 Uncharacterized conser 90.9 0.17 3.6E-06 39.2 2.1 40 43-82 35-74 (303)
104 KOG2034 Vacuolar sorting prote 90.4 0.14 3.1E-06 45.8 1.5 34 48-81 814-849 (911)
105 KOG1812 Predicted E3 ubiquitin 90.2 0.16 3.5E-06 41.8 1.6 34 50-83 145-182 (384)
106 KOG1815 Predicted E3 ubiquitin 87.1 0.42 9E-06 40.1 2.1 35 49-83 68-103 (444)
107 COG5109 Uncharacterized conser 86.9 0.39 8.4E-06 38.5 1.7 47 49-95 334-386 (396)
108 COG5220 TFB3 Cdk activating ki 86.8 0.3 6.6E-06 37.7 1.0 47 50-96 9-64 (314)
109 KOG3899 Uncharacterized conser 86.6 0.4 8.7E-06 38.0 1.6 28 69-96 325-365 (381)
110 KOG0309 Conserved WD40 repeat- 82.5 0.88 1.9E-05 40.5 2.0 25 66-90 1045-1069(1081)
111 KOG3579 Predicted E3 ubiquitin 82.0 0.73 1.6E-05 36.4 1.2 35 49-83 266-304 (352)
112 KOG0825 PHD Zn-finger protein 80.0 1.5 3.2E-05 39.4 2.5 47 50-96 95-154 (1134)
113 KOG1812 Predicted E3 ubiquitin 75.2 1.4 3E-05 36.4 1.0 41 51-91 306-351 (384)
114 KOG3113 Uncharacterized conser 74.3 4.1 8.8E-05 31.8 3.3 47 49-97 109-159 (293)
115 KOG3053 Uncharacterized conser 73.8 2.3 4.9E-05 33.2 1.8 50 49-98 18-84 (293)
116 KOG3799 Rab3 effector RIM1 and 73.7 2.2 4.7E-05 30.1 1.5 22 46-71 60-82 (169)
117 PF14569 zf-UDP: Zinc-binding 73.6 4.5 9.8E-05 25.7 2.8 47 50-96 8-62 (80)
118 PF07191 zinc-ribbons_6: zinc- 73.0 0.22 4.9E-06 31.0 -3.1 40 52-96 2-41 (70)
119 PF10571 UPF0547: Uncharacteri 72.9 2 4.4E-05 21.4 0.9 9 54-62 3-11 (26)
120 PF06844 DUF1244: Protein of u 72.8 2.3 4.9E-05 26.2 1.3 12 72-83 11-22 (68)
121 KOG4718 Non-SMC (structural ma 72.1 2.9 6.3E-05 31.7 2.0 47 50-96 180-227 (235)
122 PF10235 Cript: Microtubule-as 70.1 3.1 6.8E-05 27.2 1.6 36 51-95 44-79 (90)
123 COG5183 SSM4 Protein involved 69.5 4.4 9.5E-05 36.7 2.8 48 49-96 10-66 (1175)
124 KOG0827 Predicted E3 ubiquitin 67.6 0.63 1.4E-05 38.3 -2.5 46 51-96 196-245 (465)
125 PF04216 FdhE: Protein involve 66.1 1.3 2.8E-05 35.0 -1.1 46 49-94 170-220 (290)
126 PF10497 zf-4CXXC_R1: Zinc-fin 65.8 8.1 0.00018 25.9 3.0 26 70-95 37-71 (105)
127 KOG2113 Predicted RNA binding 65.4 5.7 0.00012 32.0 2.4 53 42-96 334-387 (394)
128 KOG4185 Predicted E3 ubiquitin 64.6 1.1 2.3E-05 35.3 -1.8 44 51-94 207-265 (296)
129 PF02318 FYVE_2: FYVE-type zin 64.4 2.9 6.2E-05 28.5 0.6 45 50-94 53-103 (118)
130 COG0068 HypF Hydrogenase matur 64.1 5.6 0.00012 35.4 2.4 47 49-95 99-183 (750)
131 KOG2068 MOT2 transcription fac 63.6 6.5 0.00014 31.7 2.5 45 52-96 250-298 (327)
132 KOG0824 Predicted E3 ubiquitin 62.1 3.3 7.1E-05 33.1 0.6 53 44-96 98-151 (324)
133 TIGR01562 FdhE formate dehydro 61.3 1.7 3.7E-05 34.8 -1.1 46 49-94 182-233 (305)
134 PF06906 DUF1272: Protein of u 60.2 11 0.00024 22.4 2.5 42 53-96 7-52 (57)
135 PF01363 FYVE: FYVE zinc finge 59.0 2.2 4.8E-05 25.9 -0.7 31 50-80 8-42 (69)
136 PF10146 zf-C4H2: Zinc finger- 58.6 9.4 0.0002 29.3 2.5 28 73-100 196-223 (230)
137 smart00064 FYVE Protein presen 58.0 9.7 0.00021 22.9 2.1 31 51-81 10-44 (68)
138 PF07975 C1_4: TFIIH C1-like d 57.9 11 0.00023 22.0 2.1 25 68-92 26-50 (51)
139 KOG0269 WD40 repeat-containing 57.3 10 0.00022 34.0 2.8 44 52-95 780-827 (839)
140 KOG2231 Predicted E3 ubiquitin 56.7 8.1 0.00018 34.2 2.1 44 53-96 2-52 (669)
141 cd00065 FYVE FYVE domain; Zinc 55.1 9.7 0.00021 21.9 1.7 30 52-81 3-36 (57)
142 PF14446 Prok-RING_1: Prokaryo 54.9 14 0.0003 21.8 2.3 30 51-80 5-38 (54)
143 KOG4451 Uncharacterized conser 54.7 11 0.00023 29.1 2.2 26 74-99 252-277 (286)
144 PF05605 zf-Di19: Drought indu 54.2 7.4 0.00016 22.5 1.1 36 51-93 2-39 (54)
145 PF13240 zinc_ribbon_2: zinc-r 53.8 2 4.3E-05 20.7 -1.2 9 85-93 13-21 (23)
146 PRK03564 formate dehydrogenase 53.5 3.7 8E-05 32.9 -0.4 44 50-93 186-234 (309)
147 KOG1829 Uncharacterized conser 53.3 4.8 0.0001 35.0 0.2 24 67-93 535-558 (580)
148 smart00132 LIM Zinc-binding do 52.3 10 0.00022 19.5 1.4 34 54-95 2-37 (39)
149 KOG2041 WD40 repeat protein [G 52.3 19 0.00041 32.5 3.6 78 15-96 1088-1185(1189)
150 PF00628 PHD: PHD-finger; Int 52.0 2.2 4.8E-05 24.2 -1.4 41 53-93 1-50 (51)
151 smart00647 IBR In Between Ring 50.6 2.2 4.8E-05 25.1 -1.6 16 68-83 45-60 (64)
152 COG4647 AcxC Acetone carboxyla 50.4 7.6 0.00016 27.2 0.8 22 55-76 61-82 (165)
153 COG3813 Uncharacterized protei 49.7 14 0.00029 23.3 1.7 24 71-96 29-52 (84)
154 PRK04023 DNA polymerase II lar 49.1 8.5 0.00018 35.7 1.1 46 50-97 625-675 (1121)
155 KOG2066 Vacuolar assembly/sort 48.9 10 0.00022 34.1 1.5 41 50-91 783-830 (846)
156 PF04710 Pellino: Pellino; In 48.3 5.9 0.00013 32.8 0.0 46 51-96 328-401 (416)
157 COG3492 Uncharacterized protei 47.5 10 0.00022 24.9 1.0 12 72-83 42-53 (104)
158 PF04423 Rad50_zn_hook: Rad50 47.3 7.2 0.00016 22.6 0.3 11 86-96 21-31 (54)
159 KOG1609 Protein involved in mR 44.4 19 0.0004 28.2 2.3 46 51-96 78-134 (323)
160 KOG2169 Zn-finger transcriptio 43.8 19 0.00041 31.8 2.4 69 43-115 298-372 (636)
161 PF13901 DUF4206: Domain of un 43.5 17 0.00038 27.1 1.9 39 50-93 151-197 (202)
162 PLN02189 cellulose synthase 43.3 17 0.00037 33.8 2.1 47 50-96 33-87 (1040)
163 TIGR00622 ssl1 transcription f 42.2 24 0.00052 24.0 2.2 41 52-92 56-110 (112)
164 KOG3842 Adaptor protein Pellin 41.4 25 0.00055 28.5 2.5 47 50-96 340-414 (429)
165 PRK11595 DNA utilization prote 39.2 26 0.00055 26.5 2.2 38 52-94 6-43 (227)
166 PF15616 TerY-C: TerY-C metal 38.9 13 0.00029 26.0 0.6 49 43-97 69-117 (131)
167 PLN02436 cellulose synthase A 38.4 22 0.00049 33.2 2.1 47 50-96 35-89 (1094)
168 PF14353 CpXC: CpXC protein 38.4 22 0.00047 24.3 1.6 45 52-96 2-49 (128)
169 KOG2979 Protein involved in DN 37.4 20 0.00043 28.0 1.4 43 51-93 176-221 (262)
170 PLN02638 cellulose synthase A 35.5 27 0.00059 32.7 2.2 47 50-96 16-70 (1079)
171 smart00154 ZnF_AN1 AN1-like Zi 32.3 30 0.00065 18.7 1.2 22 54-75 1-24 (39)
172 KOG1814 Predicted E3 ubiquitin 31.4 28 0.00061 29.1 1.4 34 49-82 366-405 (445)
173 KOG0801 Predicted E3 ubiquitin 31.4 16 0.00035 26.7 0.0 24 51-74 177-203 (205)
174 smart00290 ZnF_UBP Ubiquitin C 30.9 33 0.00071 19.1 1.3 23 54-76 2-24 (50)
175 PF01485 IBR: IBR domain; Int 30.8 3.9 8.4E-05 24.0 -2.8 31 52-82 19-59 (64)
176 TIGR00143 hypF [NiFe] hydrogen 30.7 29 0.00062 31.1 1.5 47 50-96 67-151 (711)
177 KOG2462 C2H2-type Zn-finger pr 30.4 27 0.00058 27.6 1.1 48 49-96 159-226 (279)
178 PF09723 Zn-ribbon_8: Zinc rib 30.0 9.5 0.00021 21.0 -1.1 24 68-93 10-34 (42)
179 PLN02400 cellulose synthase 28.7 33 0.00072 32.2 1.6 47 50-96 35-89 (1085)
180 KOG1356 Putative transcription 28.6 50 0.0011 30.2 2.6 47 49-95 227-281 (889)
181 PF00412 LIM: LIM domain; Int 28.4 19 0.0004 20.6 -0.1 10 86-95 27-36 (58)
182 KOG1815 Predicted E3 ubiquitin 28.3 23 0.0005 29.7 0.5 31 52-82 164-197 (444)
183 PF14311 DUF4379: Domain of un 27.4 38 0.00082 19.5 1.2 8 84-91 48-55 (55)
184 smart00249 PHD PHD zinc finger 27.2 36 0.00078 17.9 1.0 27 54-80 2-31 (47)
185 cd00350 rubredoxin_like Rubred 26.8 49 0.0011 17.0 1.4 11 84-94 16-26 (33)
186 PLN02915 cellulose synthase A 26.7 46 0.00099 31.2 2.1 47 50-96 14-68 (1044)
187 PF10186 Atg14: UV radiation r 25.3 50 0.0011 25.4 1.9 19 54-80 2-20 (302)
188 KOG2807 RNA polymerase II tran 24.4 53 0.0012 26.8 1.8 42 51-92 330-374 (378)
189 KOG0802 E3 ubiquitin ligase [P 24.3 51 0.0011 28.4 1.9 44 49-96 477-520 (543)
190 KOG3726 Uncharacterized conser 23.8 42 0.0009 29.9 1.2 40 51-93 654-697 (717)
191 COG5627 MMS21 DNA repair prote 23.6 42 0.00091 26.1 1.1 40 51-90 189-231 (275)
192 KOG2789 Putative Zn-finger pro 23.4 37 0.00081 28.3 0.8 32 51-82 74-107 (482)
193 PF07503 zf-HYPF: HypF finger; 22.9 63 0.0014 17.1 1.4 23 73-95 1-31 (35)
194 PF06937 EURL: EURL protein; 22.8 3E+02 0.0064 21.9 5.5 46 74-133 58-104 (285)
195 KOG1140 N-end rule pathway, re 22.5 1.1E+02 0.0023 30.5 3.6 33 65-97 1147-1199(1738)
196 PF01428 zf-AN1: AN1-like Zinc 22.2 51 0.0011 18.0 1.0 20 57-76 6-26 (43)
197 COG5162 Transcription initiati 22.1 60 0.0013 23.7 1.5 28 118-145 70-97 (197)
198 PLN02195 cellulose synthase A 22.0 83 0.0018 29.4 2.8 46 51-96 6-59 (977)
199 PRK11088 rrmA 23S rRNA methylt 22.0 54 0.0012 25.2 1.5 22 52-73 3-27 (272)
200 KOG2071 mRNA cleavage and poly 21.8 52 0.0011 28.8 1.4 33 49-81 511-556 (579)
201 PRK01343 zinc-binding protein; 21.5 47 0.001 19.8 0.8 12 85-96 9-20 (57)
202 PRK00418 DNA gyrase inhibitor; 21.5 67 0.0015 19.5 1.5 10 86-95 7-16 (62)
203 PF12132 DUF3587: Protein of u 21.4 73 0.0016 24.0 2.0 25 59-83 149-177 (199)
204 COG3058 FdhE Uncharacterized p 21.2 1.8E+02 0.004 23.2 4.2 45 49-93 183-233 (308)
205 PF06827 zf-FPG_IleRS: Zinc fi 21.1 19 0.00042 18.0 -0.8 12 53-64 3-14 (30)
206 KOG4443 Putative transcription 20.9 52 0.0011 29.2 1.2 48 48-95 15-72 (694)
207 PF03884 DUF329: Domain of unk 20.8 49 0.0011 19.7 0.7 10 87-96 4-13 (57)
208 PLN02248 cellulose synthase-li 20.5 82 0.0018 29.9 2.4 29 68-96 149-177 (1135)
No 1
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.45 E-value=5.4e-14 Score=79.89 Aligned_cols=38 Identities=37% Similarity=0.837 Sum_probs=29.7
Q ss_pred ccccccccccceecCCCCcccHHHHHHHhhCC----CCCccc
Q 031971 54 CGICLEICCKIVLPDCNHSMCMRCYRNWRARS----QSCPFC 91 (150)
Q Consensus 54 C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~----~~CP~C 91 (150)
|+||+++|.+|++++|||+||..||.+|++.. ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999999999976632 469987
No 2
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.37 E-value=3.8e-13 Score=99.14 Aligned_cols=53 Identities=26% Similarity=0.750 Sum_probs=45.2
Q ss_pred ccCCCCcccccccccccccceecCCCCcccHHHHHHHhhC----------------CCCCccccccccc
Q 031971 45 EIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR----------------SQSCPFCRDSLRR 97 (150)
Q Consensus 45 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~----------------~~~CP~Cr~~~~~ 97 (150)
..+..+++.|+||++.+.+|+.++|||.||..||..|+.. ...||.||..++.
T Consensus 12 ~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 12 LVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred eccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 3444678999999999999999999999999999999742 3579999998863
No 3
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.32 E-value=8.8e-13 Score=77.62 Aligned_cols=47 Identities=36% Similarity=0.863 Sum_probs=41.9
Q ss_pred cccccccccccccceecCCCCc-ccHHHHHHHhhCCCCCccccccccc
Q 031971 51 EEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 97 (150)
Q Consensus 51 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 97 (150)
+..|.||++...+++.++|||. ||..|+.+|......||+||.++..
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 5789999999999999999999 9999999999999999999998853
No 4
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.31 E-value=1.2e-12 Score=73.18 Aligned_cols=38 Identities=34% Similarity=0.951 Sum_probs=33.9
Q ss_pred ccccccccccc-eecCCCCcccHHHHHHHhhCCCCCccc
Q 031971 54 CGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFC 91 (150)
Q Consensus 54 C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~C 91 (150)
|+||++.+.+| +.++|||.||..|+.+|++....||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999 689999999999999999988899987
No 5
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.30 E-value=7.8e-13 Score=75.79 Aligned_cols=40 Identities=43% Similarity=0.976 Sum_probs=35.2
Q ss_pred ccccccccccc---ceecCCCCcccHHHHHHHhhCCCCCcccc
Q 031971 53 ECGICLEICCK---IVLPDCNHSMCMRCYRNWRARSQSCPFCR 92 (150)
Q Consensus 53 ~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr 92 (150)
.|+||++.+.. ++.++|||.||..|+.+|++.+..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 69999999953 46789999999999999999989999997
No 6
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.28 E-value=2.2e-12 Score=98.47 Aligned_cols=51 Identities=33% Similarity=0.972 Sum_probs=43.7
Q ss_pred CCcccccccccccccc--------eecCCCCcccHHHHHHHhhCCCCCccccccccccC
Q 031971 49 EREEECGICLEICCKI--------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVN 99 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p--------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 99 (150)
.++..|+||++.+.++ +.++|||.||..||.+|+....+||+||..+....
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~ 230 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVI 230 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEe
Confidence 4578999999987653 56789999999999999999999999999986543
No 7
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.28 E-value=3.7e-12 Score=78.09 Aligned_cols=46 Identities=22% Similarity=0.306 Sum_probs=42.6
Q ss_pred cccccccccccccceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 51 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 51 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
++.|+||.+.+.+|+.++|||+||..||..|+.....||.|+.+++
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 3679999999999999999999999999999888889999999884
No 8
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.28 E-value=4.3e-12 Score=103.17 Aligned_cols=69 Identities=25% Similarity=0.526 Sum_probs=58.0
Q ss_pred cCCCCcccccccccccccceecCCCCcccHHHHHHHhhCCCCCccccccccccCCCCccccCchhhhhhhhh
Q 031971 46 IDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLAS 117 (150)
Q Consensus 46 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~i~~~~~ 117 (150)
..++..+.|+||.+.+.+|++++|||.||..|+..|+.....||.|+..+.. ..+..+..+.++++...
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~---~~Lr~N~~L~~iVe~~~ 89 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE---SKLRSNWLVSEIVESFK 89 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc---ccCccchHHHHHHHHHH
Confidence 3457789999999999999999999999999999999887889999998853 25666777777777643
No 9
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=99.21 E-value=6.9e-12 Score=98.75 Aligned_cols=85 Identities=26% Similarity=0.575 Sum_probs=66.6
Q ss_pred CCCcccccccccccccceecCCCCcccHHHHHHHhhCCCCCccccccccccCCCCccccCchhhhhhhhhhcHHHHHHHH
Q 031971 48 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLF 127 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 127 (150)
+...+.|.||.++|..|+++||||+||.-||+.++.....||.|+..++.. .++-+..+.+|+......+. .|+
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es---~Lr~n~il~Eiv~S~~~~R~---~Ll 93 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTES---DLRNNRILDEIVKSLNFARN---HLL 93 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchh---hhhhhhHHHHHHHHHHHHHH---HHH
Confidence 456789999999999999999999999999999999999999999998654 45556667777777555443 455
Q ss_pred HHHhcCCCCCC
Q 031971 128 MYIDKLPFITP 138 (150)
Q Consensus 128 ~~~~~~p~~~~ 138 (150)
.++..=|.-+|
T Consensus 94 ~fl~~~~~p~P 104 (442)
T KOG0287|consen 94 QFLLESPAPSP 104 (442)
T ss_pred HHHhcCCCCCc
Confidence 66655454444
No 10
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=9.4e-12 Score=96.07 Aligned_cols=49 Identities=29% Similarity=0.834 Sum_probs=45.5
Q ss_pred CCcccccccccccccceecCCCCcccHHHHHHHhhCCCCCccccccccc
Q 031971 49 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 97 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 97 (150)
+....|.+|++...+|..+||||.||..||..|......||+||..++.
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence 5568999999999999999999999999999999988999999998853
No 11
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.1e-11 Score=93.14 Aligned_cols=48 Identities=29% Similarity=0.800 Sum_probs=43.7
Q ss_pred CCcccccccccccccceecCCCCcccHHHHHHHhh---CCCCCcccccccc
Q 031971 49 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA---RSQSCPFCRDSLR 96 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~~~ 96 (150)
...+.|.||++...+||++.|||.||..||.+|+. ....||+|+..++
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence 45789999999999999999999999999999998 4567999999875
No 12
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.15 E-value=2.8e-11 Score=68.14 Aligned_cols=38 Identities=47% Similarity=1.065 Sum_probs=35.0
Q ss_pred ccccccccccce-ecCCCCcccHHHHHHHhh--CCCCCccc
Q 031971 54 CGICLEICCKIV-LPDCNHSMCMRCYRNWRA--RSQSCPFC 91 (150)
Q Consensus 54 C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~--~~~~CP~C 91 (150)
|+||++.+.+++ +++|||.||..|+.+|+. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999998 899999999999999887 56789987
No 13
>PHA02926 zinc finger-like protein; Provisional
Probab=99.12 E-value=3.9e-11 Score=89.83 Aligned_cols=54 Identities=37% Similarity=0.985 Sum_probs=42.7
Q ss_pred CCccccccccccccc---------ceecCCCCcccHHHHHHHhhC------CCCCccccccccccCCCC
Q 031971 49 EREEECGICLEICCK---------IVLPDCNHSMCMRCYRNWRAR------SQSCPFCRDSLRRVNSGD 102 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~---------p~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~~~~~~ 102 (150)
.++..|+||++...+ ++..+|+|.||..||..|... ...||+||..+....+..
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSr 236 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSK 236 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeecccc
Confidence 457899999998643 356799999999999999974 346999999987554433
No 14
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=3.5e-11 Score=87.05 Aligned_cols=50 Identities=28% Similarity=0.729 Sum_probs=43.5
Q ss_pred CCccccccccccccc--ceecCCCCcccHHHHHHHhhCCCCCcccccccccc
Q 031971 49 EREEECGICLEICCK--IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 98 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~--p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 98 (150)
+....|+||++.+.+ |+.+.|||.||..||+..+.....||.|++.++..
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 345899999999886 45689999999999999999999999999987643
No 15
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=99.09 E-value=7.1e-11 Score=91.45 Aligned_cols=79 Identities=20% Similarity=0.365 Sum_probs=60.6
Q ss_pred CCCcccccccccccccceecCCCCcccHHHHHHHhhCCCCCccccccccccCCCCccccCchhhhhhhhhhcHHHHHHHH
Q 031971 48 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLF 127 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 127 (150)
+...+.|-||-+.+..|+.++|||+||.-||.+++.....||.||.+.... ..+.+..+.++.+.... +-.-++
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~es---rlr~~s~~~ei~es~~~---~r~~l~ 95 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCES---RLRGSSGSREINESHAR---NRDLLR 95 (391)
T ss_pred chhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHhh---hcccchhHHHHHHhhhh---ccHHHH
Confidence 455689999999999999999999999999999999999999999987543 24445556666666444 444444
Q ss_pred HHHhc
Q 031971 128 MYIDK 132 (150)
Q Consensus 128 ~~~~~ 132 (150)
.+++.
T Consensus 96 ~~L~~ 100 (391)
T COG5432 96 KVLES 100 (391)
T ss_pred HHHhc
Confidence 55543
No 16
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.06 E-value=1.3e-10 Score=65.67 Aligned_cols=42 Identities=38% Similarity=0.971 Sum_probs=36.3
Q ss_pred cccccccccccceec-CCCCcccHHHHHHHhhC-CCCCcccccc
Q 031971 53 ECGICLEICCKIVLP-DCNHSMCMRCYRNWRAR-SQSCPFCRDS 94 (150)
Q Consensus 53 ~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~ 94 (150)
.|+||++.+.+++.+ +|||.||..|+..|... ...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 499999999777655 59999999999999886 7789999875
No 17
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.03 E-value=1.7e-10 Score=73.17 Aligned_cols=42 Identities=31% Similarity=0.871 Sum_probs=34.7
Q ss_pred cccccccccccccc-------------eecCCCCcccHHHHHHHhhCCCCCcccc
Q 031971 51 EEECGICLEICCKI-------------VLPDCNHSMCMRCYRNWRARSQSCPFCR 92 (150)
Q Consensus 51 ~~~C~IC~~~~~~p-------------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr 92 (150)
+..|+||++.+.++ +..+|||.||..||.+|++....||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 34599999999432 3458999999999999999999999997
No 18
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=4.2e-10 Score=89.86 Aligned_cols=69 Identities=23% Similarity=0.473 Sum_probs=48.9
Q ss_pred HHHHHhhcccccCCCcccCCCCcccccccccccccc---eecCCCCcccHHHHHHHhhCC-CCCcccccccccc
Q 031971 29 DAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKI---VLPDCNHSMCMRCYRNWRARS-QSCPFCRDSLRRV 98 (150)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~ 98 (150)
.+...++..-............ ..|+||++.+.+. ..|||+|.||..||.+|+... ..||+|+..+.+.
T Consensus 208 ~k~~l~~~p~~~f~~~~~~~~~-~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 208 IKRLLKKLPVRTFTKGDDEDAT-DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred HHHHHhhCCcEEeccccccCCC-ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence 4444455443333322222222 5999999999975 578999999999999999876 4599999987543
No 19
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.00 E-value=2.3e-10 Score=72.52 Aligned_cols=62 Identities=21% Similarity=0.297 Sum_probs=45.8
Q ss_pred CcccccccccccccceecCCCCcccHHHHHHHhhC-CCCCccccccccccCCCCccccCchhhhhh
Q 031971 50 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRRVNSGDLWIYTSEDDIVD 114 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~~~~~i~~ 114 (150)
+.+.|+|+.+++.+|+.+++||+|+..+|..|+.. ...||.|+.++... ++..|..+...++
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~---~l~pn~~Lk~~I~ 65 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES---DLIPNRALKSAIE 65 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG---GSEE-HHHHHHHH
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc---cceECHHHHHHHH
Confidence 57899999999999999999999999999999997 88999999988543 4555554544433
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.96 E-value=5.9e-10 Score=60.83 Aligned_cols=38 Identities=39% Similarity=1.037 Sum_probs=34.6
Q ss_pred ccccccccccceecCCCCcccHHHHHHHhh-CCCCCccc
Q 031971 54 CGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFC 91 (150)
Q Consensus 54 C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~-~~~~CP~C 91 (150)
|+||++....++.++|||.||..|+..|.. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999988999999999999999999987 66779987
No 21
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=4.8e-10 Score=89.44 Aligned_cols=47 Identities=30% Similarity=0.843 Sum_probs=41.6
Q ss_pred CCcccccccccccc-c------------ceecCCCCcccHHHHHHHhhCCCCCccccccc
Q 031971 49 EREEECGICLEICC-K------------IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 95 (150)
Q Consensus 49 ~~~~~C~IC~~~~~-~------------p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 95 (150)
..+..|.||++.+- . |..++|||.+|..|++.|.+++.+||+||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 46789999999844 2 47899999999999999999999999999995
No 22
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.94 E-value=6e-10 Score=63.77 Aligned_cols=41 Identities=34% Similarity=0.985 Sum_probs=35.4
Q ss_pred cccccccccc---cceecCCCCcccHHHHHHHhhCCCCCccccc
Q 031971 53 ECGICLEICC---KIVLPDCNHSMCMRCYRNWRARSQSCPFCRD 93 (150)
Q Consensus 53 ~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~ 93 (150)
.|++|++.+. .+.+++|||+||..|+..+......||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4899999992 4678999999999999998766789999974
No 23
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.91 E-value=6.6e-10 Score=63.20 Aligned_cols=35 Identities=29% Similarity=0.800 Sum_probs=21.8
Q ss_pred cccccccccc----ceecCCCCcccHHHHHHHhhC----CCCCc
Q 031971 54 CGICLEICCK----IVLPDCNHSMCMRCYRNWRAR----SQSCP 89 (150)
Q Consensus 54 C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~----~~~CP 89 (150)
|+||.+ +.+ |+.++|||+||..|+.++..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 887 899999999999999997763 34565
No 24
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=9.8e-10 Score=90.68 Aligned_cols=48 Identities=31% Similarity=0.705 Sum_probs=41.9
Q ss_pred cccccccccccccceecCCCCcccHHHHHHHhh-----CCCCCcccccccccc
Q 031971 51 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-----RSQSCPFCRDSLRRV 98 (150)
Q Consensus 51 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~~~~~ 98 (150)
+..||||++....|+.+.|||.||..||..++. +...||+|+..+...
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK 238 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence 889999999999999999999999999999444 246899999988653
No 25
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.86 E-value=2.3e-10 Score=69.74 Aligned_cols=59 Identities=29% Similarity=0.618 Sum_probs=30.1
Q ss_pred CCccccccccccccccee-cCCCCcccHHHHHHHhhCCCCCccccccccccCCCCccccCchhhh
Q 031971 49 EREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDI 112 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~i 112 (150)
++.+.|++|.+.+.+|+. ..|.|.||..|+..-.. ..||+|+.+. ...+++.|..+.++
T Consensus 5 e~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Pa---w~qD~~~NrqLd~~ 64 (65)
T PF14835_consen 5 EELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPA---WIQDIQINRQLDSM 64 (65)
T ss_dssp HHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B----S-SS----HHHHHH
T ss_pred HHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChH---HHHHHHhhhhhhcc
Confidence 456889999999999985 69999999999977433 4599998887 34466666655544
No 26
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=3.9e-09 Score=84.58 Aligned_cols=95 Identities=34% Similarity=0.699 Sum_probs=74.6
Q ss_pred ccCCCCcccccccccccccce-----e---cCCCCcccHHHHHHHhh--C-----CCCCccccccccccCCCCccccCch
Q 031971 45 EIDIEREEECGICLEICCKIV-----L---PDCNHSMCMRCYRNWRA--R-----SQSCPFCRDSLRRVNSGDLWIYTSE 109 (150)
Q Consensus 45 ~~~~~~~~~C~IC~~~~~~p~-----~---~~CgH~fC~~Ci~~~~~--~-----~~~CP~Cr~~~~~~~~~~~~~~~~~ 109 (150)
......+..|.||++...+.. . .+|.|.||..||..|.. + .+.||.||.....+.+..+|+....
T Consensus 155 a~~~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~~Wv~t~~ 234 (344)
T KOG1039|consen 155 ALQKSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSSFWVETKE 234 (344)
T ss_pred CcCccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccccceeeeecc
Confidence 333366889999999988765 3 67999999999999984 3 5789999999998888888888776
Q ss_pred hhhhhhhhhcHHHHHHHHHHHhcCCCCCCC
Q 031971 110 DDIVDLASISRENLKRLFMYIDKLPFITPN 139 (150)
Q Consensus 110 ~~i~~~~~~~~~~~~~l~~~~~~~p~~~~~ 139 (150)
.+.....+...+.-.+...|+.+.+...|.
T Consensus 235 ~k~~li~e~~~~~s~~~c~yf~~~~g~cPf 264 (344)
T KOG1039|consen 235 EKQKLIEEYEAEMSAKDCKYFSQGLGSCPF 264 (344)
T ss_pred cccccHHHHHHHhhccchhhhcCCCCCCCC
Confidence 665555555556666667888888888775
No 27
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=3.9e-09 Score=80.80 Aligned_cols=48 Identities=27% Similarity=0.693 Sum_probs=43.0
Q ss_pred CCcccccccccccccceecCCCCcccHHHHHH-HhhCCCC-Ccccccccc
Q 031971 49 EREEECGICLEICCKIVLPDCNHSMCMRCYRN-WRARSQS-CPFCRDSLR 96 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~-~~~~~~~-CP~Cr~~~~ 96 (150)
..+..|+||++....|..++|||.||..||.. |-..+.. ||+||+...
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 45889999999999999999999999999999 8776555 999999774
No 28
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=5.2e-09 Score=80.60 Aligned_cols=46 Identities=37% Similarity=0.789 Sum_probs=41.4
Q ss_pred CCCcccccccccccccceecCCCCcccHHHHHHHhhCCCCCccccc
Q 031971 48 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRD 93 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~ 93 (150)
..+.+.|+||++.+.+|.+++|||+||..|+..++.....||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 4678999999999999999999999999999996556678999994
No 29
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.67 E-value=1.6e-08 Score=79.65 Aligned_cols=91 Identities=19% Similarity=0.396 Sum_probs=73.4
Q ss_pred CCCccccccccccccccee-cCCCCcccHHHHHHHhhCCCCCccccccccccC-CCCccccCchhhhhhhhh--hcHHHH
Q 031971 48 IEREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVN-SGDLWIYTSEDDIVDLAS--ISRENL 123 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~-~~~~~~~~~~~~i~~~~~--~~~~~~ 123 (150)
+....+|.+|..+|.++.+ ..|-|+||..||..++.....||.|...+.... ...+..+..+++++-... ....++
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLVPgl~erE~ 91 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLVPGLQEREM 91 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHHcchHHHHHH
Confidence 4567899999999999965 589999999999998888999999999886443 555666667777665443 567788
Q ss_pred HHHHHHHhcCC-CCCC
Q 031971 124 KRLFMYIDKLP-FITP 138 (150)
Q Consensus 124 ~~l~~~~~~~p-~~~~ 138 (150)
+++..|+.+.| +.+|
T Consensus 92 k~~rdFy~~~~~~d~~ 107 (331)
T KOG2660|consen 92 KRRRDFYKSRPLVDVP 107 (331)
T ss_pred HHHHHHHHhCCCcccC
Confidence 99999999998 6655
No 30
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.65 E-value=6.1e-08 Score=76.47 Aligned_cols=49 Identities=27% Similarity=0.617 Sum_probs=37.3
Q ss_pred Ccccccccccc--cccc---eecCCCCcccHHHHHH-HhhCCCCCcccccccccc
Q 031971 50 REEECGICLEI--CCKI---VLPDCNHSMCMRCYRN-WRARSQSCPFCRDSLRRV 98 (150)
Q Consensus 50 ~~~~C~IC~~~--~~~p---~~~~CgH~fC~~Ci~~-~~~~~~~CP~Cr~~~~~~ 98 (150)
++..||+|... +..- .+.+|||.||..|+.. |..+...||.|+..+...
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence 34689999983 3332 1227999999999999 656677899999988654
No 31
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.62 E-value=2.8e-08 Score=64.20 Aligned_cols=48 Identities=29% Similarity=0.769 Sum_probs=38.9
Q ss_pred CCccccccccccccc------------c-eecCCCCcccHHHHHHHhhC---CCCCcccccccc
Q 031971 49 EREEECGICLEICCK------------I-VLPDCNHSMCMRCYRNWRAR---SQSCPFCRDSLR 96 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~------------p-~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~ 96 (150)
.++..|+||...|.. | +.-.|+|.|+..||..|+.. +..||+||.+..
T Consensus 19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 357889999988872 2 34479999999999999984 478999999764
No 32
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.7e-08 Score=86.80 Aligned_cols=50 Identities=22% Similarity=0.666 Sum_probs=44.6
Q ss_pred CCcccccccccccccceecCCCCcccHHHHHH-HhhCCCCCcccccccccc
Q 031971 49 EREEECGICLEICCKIVLPDCNHSMCMRCYRN-WRARSQSCPFCRDSLRRV 98 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~-~~~~~~~CP~Cr~~~~~~ 98 (150)
..-+.|++|.....+.+++.|||.||..|+.+ +-.+...||.|...|...
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAN 691 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 45789999999999999999999999999999 555889999999998644
No 33
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2.4e-08 Score=84.96 Aligned_cols=47 Identities=38% Similarity=0.725 Sum_probs=43.3
Q ss_pred CCccccccccccccc-----ceecCCCCcccHHHHHHHhhCCCCCccccccc
Q 031971 49 EREEECGICLEICCK-----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 95 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 95 (150)
..+..|+||.+.+.. |..++|||.||..|+..|+++..+||.||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 347899999999998 78999999999999999999999999999954
No 34
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=4.6e-08 Score=76.40 Aligned_cols=47 Identities=30% Similarity=0.768 Sum_probs=40.8
Q ss_pred Ccccccccccccccc---eecCCCCcccHHHHHHHhh-CCCCCcccccccc
Q 031971 50 REEECGICLEICCKI---VLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLR 96 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~ 96 (150)
....|+||++.+.+. +.+||.|.||..|+..|+. .+..||+||.+++
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 457899999998753 5789999999999999998 5778999999874
No 35
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.48 E-value=3.6e-08 Score=81.98 Aligned_cols=81 Identities=21% Similarity=0.559 Sum_probs=57.4
Q ss_pred cccccchhhhhhcccCchhhHHHHHHHHHHHHhhcccccCCCcccCCCCcccccccccccccceecCCCCcccHHHHHHH
Q 031971 2 KGVIFPSLLQLQRGITDVEDKKQKEICDAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNW 81 (150)
Q Consensus 2 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~ 81 (150)
|++||-+|.||++......--. ++++. .+.. +-.....|.+|.+.-.+++..+|.|.||..|+.++
T Consensus 501 YAnIF~LitRmRQ~aDHP~LVl--------~S~~~-----n~~~-enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~ey 566 (791)
T KOG1002|consen 501 YANIFTLITRMRQAADHPDLVL--------YSANA-----NLPD-ENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEY 566 (791)
T ss_pred HHHHHHHHHHHHHhccCcceee--------ehhhc-----CCCc-cccCceeecccCChhhhhHhhhhhHHHHHHHHHHH
Confidence 8889999998885433322111 11111 1111 12456789999999999999999999999999987
Q ss_pred hh-----CCCCCcccccccc
Q 031971 82 RA-----RSQSCPFCRDSLR 96 (150)
Q Consensus 82 ~~-----~~~~CP~Cr~~~~ 96 (150)
.. ...+||.|...++
T Consensus 567 v~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 567 VESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred HHhhhcccCCCCcccccccc
Confidence 65 3578999988775
No 36
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=5.7e-08 Score=57.20 Aligned_cols=45 Identities=38% Similarity=0.820 Sum_probs=40.4
Q ss_pred ccccccccccccceecCCCCc-ccHHHHHH-HhhCCCCCcccccccc
Q 031971 52 EECGICLEICCKIVLPDCNHS-MCMRCYRN-WRARSQSCPFCRDSLR 96 (150)
Q Consensus 52 ~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~-~~~~~~~CP~Cr~~~~ 96 (150)
..|.||++...+.+...|||. .|..|-.+ |......||+||+++.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 779999999999999999995 79999988 6557889999999875
No 37
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2e-07 Score=72.78 Aligned_cols=48 Identities=25% Similarity=0.641 Sum_probs=42.3
Q ss_pred CcccccccccccccceecCCCCcccHHHHHH-HhhCCCCCccccccccc
Q 031971 50 REEECGICLEICCKIVLPDCNHSMCMRCYRN-WRARSQSCPFCRDSLRR 97 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~-~~~~~~~CP~Cr~~~~~ 97 (150)
....|+||+....-|+.++|+|.||.-||+. ++.....|++||.++..
T Consensus 6 ~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred cCCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 4567999999999999999999999999999 44566779999999864
No 38
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=3.3e-07 Score=74.92 Aligned_cols=52 Identities=33% Similarity=0.751 Sum_probs=46.6
Q ss_pred cCCCCcccccccccccccceecCCCCcccHHHHHHHhhCCCCCccccccccc
Q 031971 46 IDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 97 (150)
Q Consensus 46 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 97 (150)
..+..++.|.||...+..|++++|||+||..|+.+-+.....||.||..+..
T Consensus 79 ~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 79 EEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred ccccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 3347789999999999999999999999999999977788899999998863
No 39
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.3e-07 Score=75.17 Aligned_cols=60 Identities=28% Similarity=0.626 Sum_probs=47.2
Q ss_pred CCCcccccccccccccceec-CCCCcccHHHHHH-HhhCCCCCccccccccccCCCCccccCch
Q 031971 48 IEREEECGICLEICCKIVLP-DCNHSMCMRCYRN-WRARSQSCPFCRDSLRRVNSGDLWIYTSE 109 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~-~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~ 109 (150)
+..++.|+||++++....++ .|+|.||..||.. ...+...||.||+.+.. .+.++.+...
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S--krsLr~Dp~f 101 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS--KRSLRIDPNF 101 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc--cccCCCCccH
Confidence 45689999999999998765 7999999999988 45578899999998852 3445555443
No 40
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=98.24 E-value=6.2e-07 Score=66.33 Aligned_cols=61 Identities=23% Similarity=0.589 Sum_probs=50.2
Q ss_pred cccccccccccccceecCCCCcccHHHHHHHhhCCCCCccccccccccCCCCccccCchhhhhhh
Q 031971 51 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDL 115 (150)
Q Consensus 51 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~i~~~ 115 (150)
.+.|.||...+..|+.+.|||.||..|..+-.+....|.+|.+... ..+++...++.++..
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~----G~f~V~~d~~kmL~~ 256 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATY----GRFWVVSDLQKMLNK 256 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhc----cceeHHhhHHHHHhh
Confidence 5799999999999999999999999999887777889999988653 246676666665543
No 41
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=2.1e-06 Score=68.48 Aligned_cols=49 Identities=33% Similarity=0.821 Sum_probs=43.7
Q ss_pred CCcccccccccccccceecCCCCc-ccHHHHHHHhhCCCCCccccccccc
Q 031971 49 EREEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 97 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 97 (150)
+....|.||+....+.+++||.|. .|..|.+...-....||+||.++..
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 446799999999999999999995 7999999987778999999999863
No 42
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.98 E-value=4.2e-06 Score=68.58 Aligned_cols=51 Identities=29% Similarity=0.632 Sum_probs=41.7
Q ss_pred cccCCCCcccccccccccccc----eecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 44 SEIDIEREEECGICLEICCKI----VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 44 ~~~~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
....+.+..+||||++.+..- +++.|.|+|+..|+..|. ..+||+||....
T Consensus 168 ~~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 168 PPTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred CCCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence 445567788999999999864 467999999999999995 478999987543
No 43
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=8.4e-06 Score=62.98 Aligned_cols=48 Identities=25% Similarity=0.690 Sum_probs=39.5
Q ss_pred CCcccccccccccccc----------eecCCCCcccHHHHHHHhh--CCCCCcccccccc
Q 031971 49 EREEECGICLEICCKI----------VLPDCNHSMCMRCYRNWRA--RSQSCPFCRDSLR 96 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p----------~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~ 96 (150)
-++..|+||-..+... ..++|+|.|+..||+.|.- .+.+||.|+..+.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 4577899999876643 4689999999999999976 5678999998873
No 44
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.96 E-value=4.3e-06 Score=68.63 Aligned_cols=50 Identities=28% Similarity=0.723 Sum_probs=45.6
Q ss_pred CCCccccccccccccccee-cCCCCcccHHHHHHHhhCCCCCccccccccc
Q 031971 48 IEREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 97 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 97 (150)
..+++.|++|...+.+|+. +.|||.||..|+..|......||.|+.....
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~ 68 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQ 68 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccch
Confidence 5778999999999999998 5999999999999999999999999887753
No 45
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.93 E-value=6.1e-06 Score=49.68 Aligned_cols=42 Identities=21% Similarity=0.369 Sum_probs=29.9
Q ss_pred CCccccccccccccccee-cCCCCcccHHHHHHHhh--CCCCCcc
Q 031971 49 EREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRA--RSQSCPF 90 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~--~~~~CP~ 90 (150)
...+.|||.+..+.+|+. ..|||.|....|..|+. +...||.
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 457899999999999986 59999999999999984 4567987
No 46
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.92 E-value=5.9e-06 Score=52.42 Aligned_cols=46 Identities=26% Similarity=0.567 Sum_probs=36.4
Q ss_pred cccccccccccccc---------------e-ecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 51 EEECGICLEICCKI---------------V-LPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 51 ~~~C~IC~~~~~~p---------------~-~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
...|+||..-+-++ + ---|.|.|+..||.+|+.....||++|....
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 35688887665531 1 2259999999999999999999999999764
No 47
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=4.7e-06 Score=64.99 Aligned_cols=47 Identities=21% Similarity=0.500 Sum_probs=42.6
Q ss_pred CcccccccccccccceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 50 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
-.+.|-||...+..||.+.|||.||..|...-++....|++|.....
T Consensus 240 ~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred CCccccccccccccchhhcCCceeehhhhccccccCCcceecccccc
Confidence 46789999999999999999999999999887778899999988774
No 48
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=2.1e-05 Score=60.87 Aligned_cols=56 Identities=27% Similarity=0.538 Sum_probs=44.1
Q ss_pred CCCcccCCCCcccccccccccccceec-CCCCcccHHHHHHHhh--CCCCCcccccccc
Q 031971 41 GKLSEIDIEREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRA--RSQSCPFCRDSLR 96 (150)
Q Consensus 41 ~~~~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~ 96 (150)
++......+.+.+|++|.+....|.+. +|||.||..|+..-.. .+..||.|..+..
T Consensus 229 p~~sss~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 229 PKFSSSTGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCcccccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 334444457789999999999999654 6999999999988433 4689999988764
No 49
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=3e-05 Score=62.11 Aligned_cols=48 Identities=23% Similarity=0.620 Sum_probs=44.0
Q ss_pred CCcccccccccccccceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 49 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
.++..|+||......++..||+|.-|..||.+.+-+.+.|-.|+..+.
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 467899999999999999999999999999999889999999988764
No 50
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=7.7e-06 Score=51.48 Aligned_cols=47 Identities=28% Similarity=0.708 Sum_probs=36.5
Q ss_pred Cccccccccccccc------------cee-cCCCCcccHHHHHHHhh---CCCCCcccccccc
Q 031971 50 REEECGICLEICCK------------IVL-PDCNHSMCMRCYRNWRA---RSQSCPFCRDSLR 96 (150)
Q Consensus 50 ~~~~C~IC~~~~~~------------p~~-~~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~~~ 96 (150)
.+.+|.||.-.|.. |.. --|.|.|+..||.+|+. ++..||+||....
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 34589999988773 222 25999999999999997 3567999998764
No 51
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=1.7e-05 Score=65.87 Aligned_cols=48 Identities=29% Similarity=0.706 Sum_probs=38.7
Q ss_pred CCccccccccccccc-----------------ceecCCCCcccHHHHHHHhhC-CCCCcccccccc
Q 031971 49 EREEECGICLEICCK-----------------IVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLR 96 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 96 (150)
+....|+||+..+.- -..+||.|.|+..|+.+|... +-.||.||.+++
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 456789999976551 134699999999999999994 558999999874
No 52
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.68 E-value=7.1e-06 Score=51.45 Aligned_cols=46 Identities=28% Similarity=0.793 Sum_probs=23.4
Q ss_pred cccccccccccc-c---cee----cCCCCcccHHHHHHHhhC-----------CCCCcccccccc
Q 031971 51 EEECGICLEICC-K---IVL----PDCNHSMCMRCYRNWRAR-----------SQSCPFCRDSLR 96 (150)
Q Consensus 51 ~~~C~IC~~~~~-~---p~~----~~CgH~fC~~Ci~~~~~~-----------~~~CP~Cr~~~~ 96 (150)
+..|+||+..+. + |.. ..|+..||..|+.+|+.. ...||.|+.+++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 467999998765 2 221 279999999999999862 135999999885
No 53
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.68 E-value=1.7e-05 Score=64.37 Aligned_cols=46 Identities=35% Similarity=0.905 Sum_probs=40.9
Q ss_pred cccccccccccccceecCCCCcccHHHHHHHhh--CCCCCcccccccc
Q 031971 51 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRA--RSQSCPFCRDSLR 96 (150)
Q Consensus 51 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~ 96 (150)
-..|.||-+.=++..+-+|||..|..|+..|.. .+..||.||..+.
T Consensus 369 FeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 369 FELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 357999999999999999999999999999985 3678999999885
No 54
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=1.7e-05 Score=61.92 Aligned_cols=44 Identities=30% Similarity=0.834 Sum_probs=36.9
Q ss_pred CcccccccccccccceecCCCCc-ccHHHHHHHhhCCCCCccccccccc
Q 031971 50 REEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 97 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 97 (150)
....|+||++...+.+.|+|||. -|..|=.+ ...||+||..+.+
T Consensus 299 ~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr----m~eCPICRqyi~r 343 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDCVFLECGHMVTCTKCGKR----MNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHHhcCCcceEEeecCcEEeehhhccc----cccCchHHHHHHH
Confidence 37789999999999999999995 69999443 4589999997753
No 55
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.52 E-value=8.6e-05 Score=43.26 Aligned_cols=40 Identities=20% Similarity=0.674 Sum_probs=31.2
Q ss_pred ccccccc--ccccceecCCC-----CcccHHHHHHHhhC--CCCCcccc
Q 031971 53 ECGICLE--ICCKIVLPDCN-----HSMCMRCYRNWRAR--SQSCPFCR 92 (150)
Q Consensus 53 ~C~IC~~--~~~~p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr 92 (150)
.|.||++ .-.++...||. |.++..|+.+|+.. ...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889997 33456778886 77999999999963 45899984
No 56
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.46 E-value=4.7e-05 Score=67.57 Aligned_cols=52 Identities=27% Similarity=0.705 Sum_probs=41.1
Q ss_pred ccCCCCccccccccccccc-----c--eecCCCCcccHHHHHHHhh--CCCCCcccccccc
Q 031971 45 EIDIEREEECGICLEICCK-----I--VLPDCNHSMCMRCYRNWRA--RSQSCPFCRDSLR 96 (150)
Q Consensus 45 ~~~~~~~~~C~IC~~~~~~-----p--~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~ 96 (150)
....+....|+||...+.- | ....|.|.||..|+..|.. +...||.||..++
T Consensus 1463 ~~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1463 DEKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hhhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3445778899999988772 2 2346999999999999998 4578999998775
No 57
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00026 Score=56.84 Aligned_cols=47 Identities=28% Similarity=0.700 Sum_probs=36.7
Q ss_pred CCCcccccccccccccceecCCCCcccHHHHHHHhhCCCCCccccccccc
Q 031971 48 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 97 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 97 (150)
......|.||.+...+.+.++|||..| |..-.. ....||+||..+..
T Consensus 302 ~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~-~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK-HLPQCPVCRQRIRL 348 (355)
T ss_pred cCCCCceEEecCCccceeeecCCcEEE--chHHHh-hCCCCchhHHHHHH
Confidence 455788999999999999999999876 655433 33459999998753
No 58
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.28 E-value=5.7e-05 Score=65.83 Aligned_cols=53 Identities=26% Similarity=0.622 Sum_probs=41.6
Q ss_pred Ccccccccccccccce---ecCCCCcccHHHHHHHhhCCCCCccccccccccCCCC
Q 031971 50 REEECGICLEICCKIV---LPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGD 102 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 102 (150)
....|++|+..+.+.. ..+|+|.||..|+..|.....+||+||..+..+.+..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~e 177 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKVLE 177 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheeeeec
Confidence 3456777777777653 3489999999999999999999999999887554433
No 59
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.24 E-value=0.00016 Score=56.94 Aligned_cols=43 Identities=21% Similarity=0.570 Sum_probs=38.0
Q ss_pred cccccccccccccceec-CCCCcccHHHHHH-HhhCCCCCccccc
Q 031971 51 EEECGICLEICCKIVLP-DCNHSMCMRCYRN-WRARSQSCPFCRD 93 (150)
Q Consensus 51 ~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~-~~~~~~~CP~Cr~ 93 (150)
.+.|+.|..++.+|+.+ .|||.||..||.. .+...+.||.|..
T Consensus 274 ~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred cccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 38999999999999877 7999999999998 5667789999955
No 60
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00015 Score=48.26 Aligned_cols=46 Identities=22% Similarity=0.615 Sum_probs=36.0
Q ss_pred Ccccccccccccccc-----------------eecCCCCcccHHHHHHHhhCCCCCccccccc
Q 031971 50 REEECGICLEICCKI-----------------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 95 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p-----------------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 95 (150)
.-..|+||..-+-+. +--.|.|.|+..||.+|++....||+|.+.-
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 357899998654421 1126999999999999999999999997754
No 61
>PHA03096 p28-like protein; Provisional
Probab=97.21 E-value=0.00048 Score=54.30 Aligned_cols=68 Identities=22% Similarity=0.382 Sum_probs=43.7
Q ss_pred ccCchhhHHH-HHHHHHHHHhhcccccCCCcccCCCCccccccccccccc--------ceecCCCCcccHHHHHHHhhC-
Q 031971 15 GITDVEDKKQ-KEICDAKYKKKGRMDKGKLSEIDIEREEECGICLEICCK--------IVLPDCNHSMCMRCYRNWRAR- 84 (150)
Q Consensus 15 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~--------p~~~~CgH~fC~~Ci~~~~~~- 84 (150)
+..|.+++.+ .+.|.+....-++ .-.|.||++.... .....|.|.||..|+..|...
T Consensus 154 hp~d~eqr~~h~k~c~~~~~~~~~-------------~k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~ 220 (284)
T PHA03096 154 HPTDIKQRYNEQKTCLSYQLRLLL-------------SKICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTES 220 (284)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHH-------------HhhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhh
Confidence 3456666665 4555544433222 1569999997663 245589999999999999873
Q ss_pred --CCCCccccccc
Q 031971 85 --SQSCPFCRDSL 95 (150)
Q Consensus 85 --~~~CP~Cr~~~ 95 (150)
...||.||...
T Consensus 221 ~~~e~~~~c~~~~ 233 (284)
T PHA03096 221 LYKETEPENRRLN 233 (284)
T ss_pred hhcccCccccchh
Confidence 34566665543
No 62
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00025 Score=57.77 Aligned_cols=47 Identities=26% Similarity=0.699 Sum_probs=38.6
Q ss_pred Ccccccccccccccc-----eecCCCCcccHHHHHHHhhC--CCCCcccccccc
Q 031971 50 REEECGICLEICCKI-----VLPDCNHSMCMRCYRNWRAR--SQSCPFCRDSLR 96 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 96 (150)
...+||||++.+.-| +.+.|||.|-..||.+|+.+ ...||.|....+
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat 56 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT 56 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence 356899999988865 56799999999999999963 357999977654
No 63
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.00034 Score=56.70 Aligned_cols=44 Identities=27% Similarity=0.721 Sum_probs=33.3
Q ss_pred ccccccccccccc----eecCCCCcccHHHHHHHhhC---CCCCccccccc
Q 031971 52 EECGICLEICCKI----VLPDCNHSMCMRCYRNWRAR---SQSCPFCRDSL 95 (150)
Q Consensus 52 ~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~ 95 (150)
..|.||.+.+... .+-.|||.|+..|+..|... ...||.|+-.+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 4699996655542 23459999999999999984 25799998444
No 64
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.90 E-value=0.00045 Score=40.92 Aligned_cols=46 Identities=28% Similarity=0.677 Sum_probs=36.6
Q ss_pred CcccccccccccccceecCCCCcccHHHHHHHhhCCCCCccccccccc
Q 031971 50 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 97 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 97 (150)
....|-.|...-...+.++|||..|..|...+ +...||+|..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChh--hccCCCCCCCcccC
Confidence 34567777777778889999999999997654 55789999988853
No 65
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=96.81 E-value=0.00064 Score=56.08 Aligned_cols=35 Identities=29% Similarity=0.686 Sum_probs=31.8
Q ss_pred CCcccccccccccccceecCCCCcccHHHHHHHhh
Q 031971 49 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA 83 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~ 83 (150)
++++.|+||...+.+|++++|||+.|..|....+.
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 57889999999999999999999999999987554
No 66
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.73 E-value=0.00029 Score=61.52 Aligned_cols=45 Identities=27% Similarity=0.823 Sum_probs=37.8
Q ss_pred ccccccccccccceecCCCCcccHHHHHHHhh-C-CCCCccccccccc
Q 031971 52 EECGICLEICCKIVLPDCNHSMCMRCYRNWRA-R-SQSCPFCRDSLRR 97 (150)
Q Consensus 52 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~-~-~~~CP~Cr~~~~~ 97 (150)
..|.+|.+ ...++.+.|||.||..|+..... . ...||.||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 89999999 77889999999999999998544 2 3469999998753
No 67
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.00082 Score=52.98 Aligned_cols=45 Identities=31% Similarity=0.728 Sum_probs=37.3
Q ss_pred ccccccccccccc------ceecCCCCcccHHHHHHHhh-CCCCCccccccc
Q 031971 51 EEECGICLEICCK------IVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSL 95 (150)
Q Consensus 51 ~~~C~IC~~~~~~------p~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~ 95 (150)
.+.|-||-+.++. |..+.|||++|..|+..... ....||.||.+.
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 4579999988874 67888999999999999665 456789999984
No 68
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.69 E-value=0.0012 Score=50.44 Aligned_cols=43 Identities=28% Similarity=0.811 Sum_probs=30.1
Q ss_pred cccccccccc-cc-eecCCCCcccHHHHHHHhhCCCCCccccccccc
Q 031971 53 ECGICLEICC-KI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 97 (150)
Q Consensus 53 ~C~IC~~~~~-~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 97 (150)
.|..|..... ++ .++.|+|.||..|...- ....||.|++++..
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~--~~~~C~lCkk~ir~ 49 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKAS--SPDVCPLCKKSIRI 49 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccC--Cccccccccceeee
Confidence 4666665444 33 36799999999996542 22389999998753
No 69
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.57 E-value=0.0019 Score=51.96 Aligned_cols=48 Identities=25% Similarity=0.590 Sum_probs=41.3
Q ss_pred CCcccccccccccccceecCCCCcccHHHHHHH--hhCCCCCcccccccc
Q 031971 49 EREEECGICLEICCKIVLPDCNHSMCMRCYRNW--RARSQSCPFCRDSLR 96 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~--~~~~~~CP~Cr~~~~ 96 (150)
++...|.||-+.+.-...+||+|..|--|..+. +...+.||+||....
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 556789999999999999999999999999874 457899999988653
No 70
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=96.42 E-value=0.0068 Score=43.59 Aligned_cols=88 Identities=18% Similarity=0.368 Sum_probs=54.9
Q ss_pred CcccccccccccccceecCCC------------Ccc-cHHHHHHHhhC-------------------------------C
Q 031971 50 REEECGICLEICCKIVLPDCN------------HSM-CMRCYRNWRAR-------------------------------S 85 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~~~~Cg------------H~f-C~~Ci~~~~~~-------------------------------~ 85 (150)
++.+|+||++..-++|+|-|. .++ +..|+.++.+. .
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPE 80 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccc
Confidence 367899999999999988543 322 68899887650 1
Q ss_pred CCCccccccccccCCCCccccCchhhhhhhhh--------hcHHHHHHHHHHHh-cCCCCCCCcce
Q 031971 86 QSCPFCRDSLRRVNSGDLWIYTSEDDIVDLAS--------ISRENLKRLFMYID-KLPFITPNPTL 142 (150)
Q Consensus 86 ~~CP~Cr~~~~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~~~l~~~~~-~~p~~~~~~~~ 142 (150)
..||+||..+.. +.+........+... .+..+..+|....+ +.|..-|..|.
T Consensus 81 L~CPLCRG~V~G-----Wtvve~AR~~LN~K~RsC~~e~C~F~GtY~eLrKHar~~HP~~rP~~vD 141 (162)
T PF07800_consen 81 LACPLCRGEVKG-----WTVVEPARRFLNAKKRSCSQESCSFSGTYSELRKHARSEHPSARPSEVD 141 (162)
T ss_pred ccCccccCceec-----eEEchHHHHHhccCCccCcccccccccCHHHHHHHHHhhCCCCCCccCC
Confidence 369999998853 222222333322222 35556666654444 35888886653
No 71
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.39 E-value=0.0033 Score=36.35 Aligned_cols=42 Identities=26% Similarity=0.696 Sum_probs=21.0
Q ss_pred ccccccccccc--eec--CCCCcccHHHHHHHhh-CCCCCccccccc
Q 031971 54 CGICLEICCKI--VLP--DCNHSMCMRCYRNWRA-RSQSCPFCRDSL 95 (150)
Q Consensus 54 C~IC~~~~~~p--~~~--~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~ 95 (150)
|++|.+.+... ... +||+..|..|.....+ ....||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888887432 222 6888999999988775 578999999864
No 72
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0063 Score=49.85 Aligned_cols=46 Identities=22% Similarity=0.524 Sum_probs=35.1
Q ss_pred CCcccccccccccccc---eecCCCCcccHHHHHHHhh--------CCCCCcccccc
Q 031971 49 EREEECGICLEICCKI---VLPDCNHSMCMRCYRNWRA--------RSQSCPFCRDS 94 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~--------~~~~CP~Cr~~ 94 (150)
...+.|.||++...-. +.+||+|.||+.|+..+.. +...||-+.-.
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 3567899999977653 5789999999999999765 23467766554
No 73
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=0.0028 Score=55.98 Aligned_cols=43 Identities=26% Similarity=0.512 Sum_probs=36.1
Q ss_pred Ccccccccccccccc-eecCCCCcccHHHHHHHhhCCCCCccccccc
Q 031971 50 REEECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 95 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 95 (150)
....|..|...+.-| |...|||.||..|+. .+...||.|+...
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchhh
Confidence 346899999999988 468999999999987 4668899997743
No 74
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.28 E-value=0.0018 Score=43.15 Aligned_cols=37 Identities=19% Similarity=0.460 Sum_probs=29.6
Q ss_pred CcccCCCCcccccccccccccc--eecCCCCcccHHHHH
Q 031971 43 LSEIDIEREEECGICLEICCKI--VLPDCNHSMCMRCYR 79 (150)
Q Consensus 43 ~~~~~~~~~~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~ 79 (150)
.....+.+...|++|...+... +..||||.||..|+.
T Consensus 70 ~~~v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 70 SRSVVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CceEEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 3444557788899999999876 367999999999975
No 75
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.0086 Score=46.97 Aligned_cols=44 Identities=25% Similarity=0.656 Sum_probs=32.9
Q ss_pred cccccccc-cccc----eecCCCCcccHHHHHH-HhhCCCCCcccccccc
Q 031971 53 ECGICLEI-CCKI----VLPDCNHSMCMRCYRN-WRARSQSCPFCRDSLR 96 (150)
Q Consensus 53 ~C~IC~~~-~~~p----~~~~CgH~fC~~Ci~~-~~~~~~~CP~Cr~~~~ 96 (150)
.||+|... +.+| .+-+|||..|..|..+ +..+...||.|...+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 48888753 3333 2239999999999999 4457889999988764
No 76
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=95.93 E-value=0.0095 Score=47.06 Aligned_cols=48 Identities=25% Similarity=0.676 Sum_probs=37.8
Q ss_pred CCcccccccccccccc---eecCCCCcccHHHHHHHhh-----------------------CCCCCcccccccc
Q 031971 49 EREEECGICLEICCKI---VLPDCNHSMCMRCYRNWRA-----------------------RSQSCPFCRDSLR 96 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~-----------------------~~~~CP~Cr~~~~ 96 (150)
...-.|.||+--|.+. ..++|.|-|+..|+-+++. ....||+||..+.
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 3466899999988863 4679999999999988764 1246999999875
No 77
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.84 E-value=0.011 Score=46.02 Aligned_cols=50 Identities=16% Similarity=0.349 Sum_probs=40.3
Q ss_pred CCCcccccccccccccc----eecCCCCcccHHHHHHHhhCCCCCcccccccccc
Q 031971 48 IEREEECGICLEICCKI----VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 98 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 98 (150)
....+.|||....|..- .+.+|||.|+..++.... ....||.|-.++...
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEE 163 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccC
Confidence 35678999999988642 356999999999999974 456799999999743
No 78
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=95.81 E-value=0.016 Score=40.46 Aligned_cols=48 Identities=33% Similarity=0.817 Sum_probs=39.4
Q ss_pred Ccccccccccccccceec----CCCCcccHHHHHH-Hhh--CCCCCccccccccc
Q 031971 50 REEECGICLEICCKIVLP----DCNHSMCMRCYRN-WRA--RSQSCPFCRDSLRR 97 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~-~~~--~~~~CP~Cr~~~~~ 97 (150)
.-.+|.||.+.-.+...+ -||-..|..|-.. |.. ....||.|+..+..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 567999999999987655 4999999999999 554 45789999988754
No 79
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.71 E-value=0.0041 Score=50.76 Aligned_cols=47 Identities=32% Similarity=0.605 Sum_probs=37.1
Q ss_pred CCcccccccccccccc----eecCCCCcccHHHHHHHhh--CCCCCccccccc
Q 031971 49 EREEECGICLEICCKI----VLPDCNHSMCMRCYRNWRA--RSQSCPFCRDSL 95 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~ 95 (150)
+-.+.|..|-+.+.-. --+||.|.|+..|+.+++. ...+||.||+-.
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 3468899999887632 3579999999999999776 357899999533
No 80
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.0084 Score=47.82 Aligned_cols=46 Identities=17% Similarity=0.370 Sum_probs=38.6
Q ss_pred Ccccccccccccccceec-CCCCcccHHHHHHHhhCCCCCccccccc
Q 031971 50 REEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSL 95 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 95 (150)
+...||+|+....+|..+ --|-.||..|+..+......||+-..+.
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 457899999999998655 5599999999999999999999765554
No 81
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=0.011 Score=45.48 Aligned_cols=49 Identities=14% Similarity=0.259 Sum_probs=42.7
Q ss_pred Ccccccccccccccc----eecCCCCcccHHHHHHHhhCCCCCcccccccccc
Q 031971 50 REEECGICLEICCKI----VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 98 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 98 (150)
....||+|.+.+.+. ++-+|||.+|..|...+......||+|-.++...
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence 568899999999984 4669999999999999988889999999988643
No 82
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=95.19 E-value=0.0084 Score=34.42 Aligned_cols=42 Identities=31% Similarity=0.782 Sum_probs=26.1
Q ss_pred ccccccccccceecCCC-CcccHHHHHHHhhCCCCCccccccccc
Q 031971 54 CGICLEICCKIVLPDCN-HSMCMRCYRNWRARSQSCPFCRDSLRR 97 (150)
Q Consensus 54 C~IC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 97 (150)
|.-|. |.+.....|. |-.|..|+...+..+..||+|..++++
T Consensus 5 CKsCW--f~~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 5 CKSCW--FANKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp --SS---S--SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred Chhhh--hcCCCeeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 44444 4444566777 778999999999999999999998864
No 83
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=94.97 E-value=0.032 Score=31.46 Aligned_cols=38 Identities=29% Similarity=0.712 Sum_probs=22.5
Q ss_pred ccccccccccceec---CCCCcccHHHHHHHhhCCC--CCccc
Q 031971 54 CGICLEICCKIVLP---DCNHSMCMRCYRNWRARSQ--SCPFC 91 (150)
Q Consensus 54 C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~~--~CP~C 91 (150)
|.+|.++....+.= .|+-.++..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 67888888877653 5999999999999766433 69987
No 84
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=94.64 E-value=0.033 Score=52.42 Aligned_cols=50 Identities=24% Similarity=0.686 Sum_probs=37.1
Q ss_pred CCcccccccccc-cc--cceecCCCCcccHHHHHHHhhC----------CCCCcccccccccc
Q 031971 49 EREEECGICLEI-CC--KIVLPDCNHSMCMRCYRNWRAR----------SQSCPFCRDSLRRV 98 (150)
Q Consensus 49 ~~~~~C~IC~~~-~~--~p~~~~CgH~fC~~Ci~~~~~~----------~~~CP~Cr~~~~~~ 98 (150)
..+..|-||+.. +. ..+.+.|+|.|+..|.++.+++ -..||+|+.++...
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 457789999853 33 2368999999999999875542 24799999887543
No 85
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.62 E-value=0.028 Score=41.35 Aligned_cols=47 Identities=23% Similarity=0.620 Sum_probs=34.1
Q ss_pred cccccccccccccce-------ecCCCCcccHHHHHHHhhC-----------CCCCccccccccc
Q 031971 51 EEECGICLEICCKIV-------LPDCNHSMCMRCYRNWRAR-----------SQSCPFCRDSLRR 97 (150)
Q Consensus 51 ~~~C~IC~~~~~~p~-------~~~CgH~fC~~Ci~~~~~~-----------~~~CP~Cr~~~~~ 97 (150)
...|.||..+--+.. ...||..|+.-|+..|+.+ -..||.|..++..
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 345777776544321 3479999999999999973 1469999998864
No 86
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.47 E-value=0.0095 Score=54.85 Aligned_cols=47 Identities=32% Similarity=0.767 Sum_probs=41.6
Q ss_pred CCCcccccccccccc-cceecCCCCcccHHHHHHHhhCCCCCcccccc
Q 031971 48 IEREEECGICLEICC-KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDS 94 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~ 94 (150)
+.....|.||.+.+. ......|||.+|..|...|+..+..||.|...
T Consensus 1150 ~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1150 LSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred hhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 345679999999999 56789999999999999999999999999753
No 87
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=94.41 E-value=0.0095 Score=51.85 Aligned_cols=50 Identities=24% Similarity=0.596 Sum_probs=41.4
Q ss_pred CCcccccccccccccceecCCCCcccHHHHHH---HhhCCCCCcccccccccc
Q 031971 49 EREEECGICLEICCKIVLPDCNHSMCMRCYRN---WRARSQSCPFCRDSLRRV 98 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~---~~~~~~~CP~Cr~~~~~~ 98 (150)
...+.|+||...+..|+.+.|.|.||..|+.. |......||+|+..+.+.
T Consensus 19 ~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 19 QKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred hhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 45788999999999999999999999999876 333467899999877543
No 88
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.21 E-value=0.066 Score=38.62 Aligned_cols=47 Identities=23% Similarity=0.600 Sum_probs=35.5
Q ss_pred CCcccccccccccccceecCCCCc-----ccHHHHHHHhh--CCCCCcccccccc
Q 031971 49 EREEECGICLEICCKIVLPDCNHS-----MCMRCYRNWRA--RSQSCPFCRDSLR 96 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~CgH~-----fC~~Ci~~~~~--~~~~CP~Cr~~~~ 96 (150)
..+..|-||.+.-. +...||... -|..|+.+|.. +...|+.|+.++.
T Consensus 6 ~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 45678999998754 334577653 39999999997 4578999988764
No 89
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=94.13 E-value=0.017 Score=40.49 Aligned_cols=33 Identities=27% Similarity=0.627 Sum_probs=26.8
Q ss_pred ccccccccccccc--ce-ecCCC------CcccHHHHHHHhh
Q 031971 51 EEECGICLEICCK--IV-LPDCN------HSMCMRCYRNWRA 83 (150)
Q Consensus 51 ~~~C~IC~~~~~~--p~-~~~Cg------H~fC~~Ci~~~~~ 83 (150)
...|.||++.+.+ .+ .++|| |.||..|+.+|..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 6789999999887 43 45666 6899999999954
No 90
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=0.048 Score=44.59 Aligned_cols=47 Identities=17% Similarity=0.333 Sum_probs=37.5
Q ss_pred CCccccccccccccc---ceecCCCCcccHHHHHHHhhC-C--CCCccccccc
Q 031971 49 EREEECGICLEICCK---IVLPDCNHSMCMRCYRNWRAR-S--QSCPFCRDSL 95 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~-~--~~CP~Cr~~~ 95 (150)
...+.|||=.+.-.+ |..+.|||..+.+-+.+..++ . ..||.|....
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred cceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 456899998776653 789999999999999997664 3 6899996544
No 91
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=93.98 E-value=0.037 Score=44.05 Aligned_cols=45 Identities=24% Similarity=0.531 Sum_probs=36.5
Q ss_pred CCcccccccccccccce-ecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 49 EREEECGICLEICCKIV-LPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
.+-+.||||.+.+..|+ .-+=||.-|..|-.+ ....||.||.++.
T Consensus 46 ~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~---~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK---VSNKCPTCRLPIG 91 (299)
T ss_pred hhhccCchhhccCcccceecCCCcEehhhhhhh---hcccCCccccccc
Confidence 45689999999999985 345589999999653 4678999999886
No 92
>PHA02862 5L protein; Provisional
Probab=93.84 E-value=0.065 Score=38.08 Aligned_cols=45 Identities=20% Similarity=0.687 Sum_probs=34.1
Q ss_pred cccccccccccccceecCCCC-----cccHHHHHHHhh--CCCCCcccccccc
Q 031971 51 EEECGICLEICCKIVLPDCNH-----SMCMRCYRNWRA--RSQSCPFCRDSLR 96 (150)
Q Consensus 51 ~~~C~IC~~~~~~p~~~~CgH-----~fC~~Ci~~~~~--~~~~CP~Cr~~~~ 96 (150)
...|=||.+.-.+. .-||.. .-|..|+.+|.+ +...|+.|+.+..
T Consensus 2 ~diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 35689999876544 467664 358999999998 4578999988764
No 93
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=93.36 E-value=0.051 Score=42.67 Aligned_cols=43 Identities=30% Similarity=0.683 Sum_probs=35.6
Q ss_pred ccccccccccccc----ceecCCCCcccHHHHHHHhhCCCCCccccc
Q 031971 51 EEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRD 93 (150)
Q Consensus 51 ~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~ 93 (150)
...||||.+.+.. |..++|||..+..|........-.||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 4449999987663 567899999999999987665699999988
No 94
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.28 E-value=0.038 Score=41.71 Aligned_cols=39 Identities=31% Similarity=0.760 Sum_probs=32.0
Q ss_pred ccccccccccceecCCCC-cccHHHHHHHhhCCCCCcccccccc
Q 031971 54 CGICLEICCKIVLPDCNH-SMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 54 C~IC~~~~~~p~~~~CgH-~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
|-.|.+.-...+++||.| .+|..|-.. ...||+|+.+..
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 999999888888999999 689999432 456999988764
No 95
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=93.10 E-value=0.042 Score=31.96 Aligned_cols=43 Identities=19% Similarity=0.519 Sum_probs=21.4
Q ss_pred ccccccccccccccee-cCCCCcccHHHHHHHhh-----CCCCCcccccc
Q 031971 51 EEECGICLEICCKIVL-PDCNHSMCMRCYRNWRA-----RSQSCPFCRDS 94 (150)
Q Consensus 51 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~ 94 (150)
.+.|++....+..|+. ..|.|.-|.+ +..|+. ....||.|.++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 3679999999999975 6899986643 222333 35679999763
No 96
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.90 E-value=0.038 Score=47.85 Aligned_cols=40 Identities=30% Similarity=0.633 Sum_probs=31.9
Q ss_pred CCCcccccccccccc----cceecCCCCcccHHHHHHHhhCCCCCc
Q 031971 48 IEREEECGICLEICC----KIVLPDCNHSMCMRCYRNWRARSQSCP 89 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~CP 89 (150)
+.+-+.|+||+..|. .|+.+-|||+.|..|+..... ..||
T Consensus 8 w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn--~scp 51 (861)
T KOG3161|consen 8 WVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN--ASCP 51 (861)
T ss_pred hHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh--ccCC
Confidence 345678999988776 488999999999999988544 4566
No 97
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.60 E-value=0.15 Score=41.24 Aligned_cols=49 Identities=29% Similarity=0.606 Sum_probs=35.2
Q ss_pred Cccccccccccccc--ce--ecCCCCcccHHHHHHHhh-CCCCCcccccccccc
Q 031971 50 REEECGICLEICCK--IV--LPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRV 98 (150)
Q Consensus 50 ~~~~C~IC~~~~~~--p~--~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~ 98 (150)
++..||+|++.+.. .- --+||-..|.-|+....+ -...||-||......
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 34459999997663 22 347888889999777554 367899999987643
No 98
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=92.22 E-value=0.31 Score=39.78 Aligned_cols=26 Identities=31% Similarity=0.839 Sum_probs=20.5
Q ss_pred CcccHHHHHHHhh-------------CCCCCcccccccc
Q 031971 71 HSMCMRCYRNWRA-------------RSQSCPFCRDSLR 96 (150)
Q Consensus 71 H~fC~~Ci~~~~~-------------~~~~CP~Cr~~~~ 96 (150)
...|..|+-+|.. ++..||.||+.+.
T Consensus 313 PmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 313 PMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred chHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 4568999988875 3457999999885
No 99
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=92.00 E-value=0.09 Score=30.14 Aligned_cols=38 Identities=26% Similarity=0.714 Sum_probs=24.0
Q ss_pred cccccccccc--ceecCCCC-----cccHHHHHHHhh--CCCCCccc
Q 031971 54 CGICLEICCK--IVLPDCNH-----SMCMRCYRNWRA--RSQSCPFC 91 (150)
Q Consensus 54 C~IC~~~~~~--p~~~~CgH-----~fC~~Ci~~~~~--~~~~CP~C 91 (150)
|-||++.-.+ +...||+- ..|..|+.+|.. +...|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 5678876553 56778774 358999999987 45678876
No 100
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.98 E-value=0.14 Score=39.10 Aligned_cols=48 Identities=19% Similarity=0.466 Sum_probs=38.9
Q ss_pred CCcccccccccccccc--eecCCCCcccHHHHHHHhhC--------CCCCcccccccc
Q 031971 49 EREEECGICLEICCKI--VLPDCNHSMCMRCYRNWRAR--------SQSCPFCRDSLR 96 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~--------~~~CP~Cr~~~~ 96 (150)
.....|..|...+... +.+.|-|.|+..|+.+|-.. .-.||.|..++.
T Consensus 48 DY~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 4566799999888754 67899999999999998762 457999988773
No 101
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=91.35 E-value=0.15 Score=45.45 Aligned_cols=47 Identities=30% Similarity=0.704 Sum_probs=36.1
Q ss_pred CCccccccccccccc--ce--ecCCCCcccHHHHHHHhh-------CCCCCccccccc
Q 031971 49 EREEECGICLEICCK--IV--LPDCNHSMCMRCYRNWRA-------RSQSCPFCRDSL 95 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~--p~--~~~CgH~fC~~Ci~~~~~-------~~~~CP~Cr~~~ 95 (150)
.....|.||.+.+.. |+ -..|-|.|+..||..|-. ....||.|....
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 356789999998875 32 235779999999999975 346899998544
No 102
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.10 E-value=0.076 Score=42.28 Aligned_cols=45 Identities=27% Similarity=0.617 Sum_probs=31.8
Q ss_pred ccccccccccccc-ceecCCCCcccHHHHHHHhhCCCCCccccccccc
Q 031971 51 EEECGICLEICCK-IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 97 (150)
Q Consensus 51 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 97 (150)
...|.-|--.+.. ..+++|.|.||.+|...- ..+.||.|...+.+
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~--~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARSD--SDKICPLCDDRVQR 135 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhcC--ccccCcCcccHHHH
Confidence 3456667544432 457899999999997642 35789999777643
No 103
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.94 E-value=0.17 Score=39.16 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=33.7
Q ss_pred CcccCCCCcccccccccccccceecCCCCcccHHHHHHHh
Q 031971 43 LSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWR 82 (150)
Q Consensus 43 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~ 82 (150)
+....+..-..|+.|+..+.+|+..+=||.||..||.++.
T Consensus 35 LgrDsiK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 35 LGRDSIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYI 74 (303)
T ss_pred hcccccCCcceeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence 4444456677899999999999999999999999999854
No 104
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.39 E-value=0.14 Score=45.84 Aligned_cols=34 Identities=21% Similarity=0.424 Sum_probs=27.7
Q ss_pred CCCcccccccccccc-cc-eecCCCCcccHHHHHHH
Q 031971 48 IEREEECGICLEICC-KI-VLPDCNHSMCMRCYRNW 81 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~-~p-~~~~CgH~fC~~Ci~~~ 81 (150)
++....|.+|...+. .| ...+|||.|+..|+.+.
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~ 849 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRH 849 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHH
Confidence 567889999998654 45 46799999999999874
No 105
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.19 E-value=0.16 Score=41.79 Aligned_cols=34 Identities=29% Similarity=0.699 Sum_probs=25.7
Q ss_pred Ccccccccccccccc----eecCCCCcccHHHHHHHhh
Q 031971 50 REEECGICLEICCKI----VLPDCNHSMCMRCYRNWRA 83 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~ 83 (150)
...+|.||......+ ....|+|.||..|+.++.+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 467899999433332 3568999999999998765
No 106
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.15 E-value=0.42 Score=40.06 Aligned_cols=35 Identities=29% Similarity=0.780 Sum_probs=30.2
Q ss_pred CCccccccccccccc-ceecCCCCcccHHHHHHHhh
Q 031971 49 EREEECGICLEICCK-IVLPDCNHSMCMRCYRNWRA 83 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~ 83 (150)
.....|.||.+.... ...+.|||.||..|+..++.
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhh
Confidence 445899999999885 67789999999999999776
No 107
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=86.88 E-value=0.39 Score=38.47 Aligned_cols=47 Identities=21% Similarity=0.501 Sum_probs=36.3
Q ss_pred CCcccccccccccc---cceecCCCCcccHHHHHHHhhC---CCCCccccccc
Q 031971 49 EREEECGICLEICC---KIVLPDCNHSMCMRCYRNWRAR---SQSCPFCRDSL 95 (150)
Q Consensus 49 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~ 95 (150)
..-+.||+=.+.-. .|+++.|||..-..-+....++ ...||.|....
T Consensus 334 Hs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~ 386 (396)
T COG5109 334 HSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMS 386 (396)
T ss_pred cceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcch
Confidence 45688998766554 4789999999999999887663 46899996543
No 108
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=86.83 E-value=0.3 Score=37.65 Aligned_cols=47 Identities=26% Similarity=0.653 Sum_probs=33.4
Q ss_pred Ccccccccccc-cccc-e---ec-CCCCcccHHHHHHHh-hCCCCCc--ccccccc
Q 031971 50 REEECGICLEI-CCKI-V---LP-DCNHSMCMRCYRNWR-ARSQSCP--FCRDSLR 96 (150)
Q Consensus 50 ~~~~C~IC~~~-~~~p-~---~~-~CgH~fC~~Ci~~~~-~~~~~CP--~Cr~~~~ 96 (150)
.+..||+|... +-+| + +- .|-|..|-+|+.+.+ .+...|| -|.+-+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 46689999864 2334 1 22 499999999999954 4677899 7866543
No 109
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.62 E-value=0.4 Score=37.99 Aligned_cols=28 Identities=29% Similarity=0.696 Sum_probs=21.7
Q ss_pred CCCcccHHHHHHHhh-------------CCCCCcccccccc
Q 031971 69 CNHSMCMRCYRNWRA-------------RSQSCPFCRDSLR 96 (150)
Q Consensus 69 CgH~fC~~Ci~~~~~-------------~~~~CP~Cr~~~~ 96 (150)
|....|..|+-+|.. ++..||.||+.+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 445678999988764 4568999999875
No 110
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=82.50 E-value=0.88 Score=40.53 Aligned_cols=25 Identities=24% Similarity=0.607 Sum_probs=22.0
Q ss_pred ecCCCCcccHHHHHHHhhCCCCCcc
Q 031971 66 LPDCNHSMCMRCYRNWRARSQSCPF 90 (150)
Q Consensus 66 ~~~CgH~fC~~Ci~~~~~~~~~CP~ 90 (150)
...|||..+..|...|+.....||.
T Consensus 1045 Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1045 CGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hccccccccHHHHHHHHhcCCcCCC
Confidence 4579999999999999998888875
No 111
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.96 E-value=0.73 Score=36.43 Aligned_cols=35 Identities=23% Similarity=0.507 Sum_probs=29.2
Q ss_pred CCcccccccccccccceecCC----CCcccHHHHHHHhh
Q 031971 49 EREEECGICLEICCKIVLPDC----NHSMCMRCYRNWRA 83 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~C----gH~fC~~Ci~~~~~ 83 (150)
...+.|.+|.+.+.|--...| .|.||..|-++..+
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK 304 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIK 304 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCHHHHH
Confidence 346899999999999877766 49999999888665
No 112
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=79.98 E-value=1.5 Score=39.37 Aligned_cols=47 Identities=13% Similarity=0.358 Sum_probs=34.5
Q ss_pred Ccccccccccccccce----ec---CCCCcccHHHHHHHhhC------CCCCcccccccc
Q 031971 50 REEECGICLEICCKIV----LP---DCNHSMCMRCYRNWRAR------SQSCPFCRDSLR 96 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~----~~---~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~ 96 (150)
...+|.+|..-+.+++ .. .|+|.+|..||..|..+ ...|++|...+.
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 3567888877777632 33 49999999999999873 346888877663
No 113
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.16 E-value=1.4 Score=36.40 Aligned_cols=41 Identities=22% Similarity=0.604 Sum_probs=29.7
Q ss_pred ccccccccccccc-----ceecCCCCcccHHHHHHHhhCCCCCccc
Q 031971 51 EEECGICLEICCK-----IVLPDCNHSMCMRCYRNWRARSQSCPFC 91 (150)
Q Consensus 51 ~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~CP~C 91 (150)
-..|+.|.-.+.. -++-.|||-||..|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 4468877766542 2444599999999999998877766555
No 114
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.33 E-value=4.1 Score=31.79 Aligned_cols=47 Identities=13% Similarity=0.245 Sum_probs=36.3
Q ss_pred CCccccccccccccc----ceecCCCCcccHHHHHHHhhCCCCCccccccccc
Q 031971 49 EREEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 97 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 97 (150)
...+.|||=.-.+.. ....+|||.|-..-+.+.. ...|+.|...+..
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~ 159 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQE 159 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcccc
Confidence 346789987766665 3567999999998887763 6889999998863
No 115
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.77 E-value=2.3 Score=33.21 Aligned_cols=50 Identities=28% Similarity=0.546 Sum_probs=36.0
Q ss_pred CCccccccccccccccee----cCCC-----CcccHHHHHHHhh--------CCCCCcccccccccc
Q 031971 49 EREEECGICLEICCKIVL----PDCN-----HSMCMRCYRNWRA--------RSQSCPFCRDSLRRV 98 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~----~~Cg-----H~fC~~Ci~~~~~--------~~~~CP~Cr~~~~~~ 98 (150)
+.+-.|-||+..=.+-.. -||. |.-|..|+.+|.. +...||.|+......
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv 84 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV 84 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence 456789999987776422 2554 5679999999986 235799998876543
No 116
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.74 E-value=2.2 Score=30.11 Aligned_cols=22 Identities=27% Similarity=0.824 Sum_probs=15.5
Q ss_pred cCCCCcccccccccc-cccceecCCCC
Q 031971 46 IDIEREEECGICLEI-CCKIVLPDCNH 71 (150)
Q Consensus 46 ~~~~~~~~C~IC~~~-~~~p~~~~CgH 71 (150)
....++.+|.||... |.+ .|||
T Consensus 60 aGv~ddatC~IC~KTKFAD----G~GH 82 (169)
T KOG3799|consen 60 AGVGDDATCGICHKTKFAD----GCGH 82 (169)
T ss_pred cccCcCcchhhhhhccccc----ccCc
Confidence 445788999999964 444 4666
No 117
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=73.62 E-value=4.5 Score=25.73 Aligned_cols=47 Identities=23% Similarity=0.670 Sum_probs=20.7
Q ss_pred Cccccccccccccc-----ce--ecCCCCcccHHHHHH-HhhCCCCCcccccccc
Q 031971 50 REEECGICLEICCK-----IV--LPDCNHSMCMRCYRN-WRARSQSCPFCRDSLR 96 (150)
Q Consensus 50 ~~~~C~IC~~~~~~-----p~--~~~CgH~fC~~Ci~~-~~~~~~~CP~Cr~~~~ 96 (150)
....|.||-+.+.. +. --.|+--.|..|..- ...+...||.|+.+..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 45679999987653 21 236777789999865 5567899999997764
No 118
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=73.01 E-value=0.22 Score=31.01 Aligned_cols=40 Identities=23% Similarity=0.546 Sum_probs=21.7
Q ss_pred ccccccccccccceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 52 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 52 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
..||.|...+.... ||.+|..|-..+ .....||.|..++.
T Consensus 2 ~~CP~C~~~L~~~~----~~~~C~~C~~~~-~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHYHCEACQKDY-KKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET----TEEEETTT--EE-EEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC----CEEECccccccc-eecccCCCcccHHH
Confidence 57999987755322 778888886653 23467999988764
No 119
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=72.90 E-value=2 Score=21.39 Aligned_cols=9 Identities=22% Similarity=0.316 Sum_probs=4.2
Q ss_pred ccccccccc
Q 031971 54 CGICLEICC 62 (150)
Q Consensus 54 C~IC~~~~~ 62 (150)
||-|...+.
T Consensus 3 CP~C~~~V~ 11 (26)
T PF10571_consen 3 CPECGAEVP 11 (26)
T ss_pred CCCCcCCch
Confidence 455544443
No 120
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=72.75 E-value=2.3 Score=26.17 Aligned_cols=12 Identities=25% Similarity=0.999 Sum_probs=8.8
Q ss_pred cccHHHHHHHhh
Q 031971 72 SMCMRCYRNWRA 83 (150)
Q Consensus 72 ~fC~~Ci~~~~~ 83 (150)
.||..|+..|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999976
No 121
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=72.07 E-value=2.9 Score=31.71 Aligned_cols=47 Identities=21% Similarity=0.557 Sum_probs=38.0
Q ss_pred Ccccccccccccccce-ecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 50 REEECGICLEICCKIV-LPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
.--.|.+|..+....+ --+||-.++..|+..+.+....||.|..-.+
T Consensus 180 nlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w~ 227 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGDLWT 227 (235)
T ss_pred HHHHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchhcccC
Confidence 3458999999877655 4578888999999999998899999965554
No 122
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=70.12 E-value=3.1 Score=27.23 Aligned_cols=36 Identities=19% Similarity=0.606 Sum_probs=28.3
Q ss_pred cccccccccccccceecCCCCcccHHHHHHHhhCCCCCccccccc
Q 031971 51 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 95 (150)
Q Consensus 51 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 95 (150)
.-.|.||...+..+ ||.||..|.- ....|.+|-+.+
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAY----kkGiCamCGKki 79 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAY----KKGICAMCGKKI 79 (90)
T ss_pred CccccccccccccC-----CCccChhhhc----ccCcccccCCee
Confidence 45799998776665 8899999943 457899998877
No 123
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=69.46 E-value=4.4 Score=36.67 Aligned_cols=48 Identities=21% Similarity=0.577 Sum_probs=36.7
Q ss_pred CCcccccccccc--cccceecCCCCc-----ccHHHHHHHhh--CCCCCcccccccc
Q 031971 49 EREEECGICLEI--CCKIVLPDCNHS-----MCMRCYRNWRA--RSQSCPFCRDSLR 96 (150)
Q Consensus 49 ~~~~~C~IC~~~--~~~p~~~~CgH~-----fC~~Ci~~~~~--~~~~CP~Cr~~~~ 96 (150)
+++..|.||... -.+|..-||..+ .|.+|+.+|.. ....|-.|..++.
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 345889999854 445777777753 49999999998 4578999988764
No 124
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.56 E-value=0.63 Score=38.30 Aligned_cols=46 Identities=24% Similarity=0.370 Sum_probs=39.0
Q ss_pred cccccccccccccc----eecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 51 EEECGICLEICCKI----VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 51 ~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
.-.|+||...+..- ..+-|||.++..|+..|+.....||.|+..+.
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~ 245 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELP 245 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence 45799999877643 46789999999999999998889999999875
No 125
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=66.07 E-value=1.3 Score=34.98 Aligned_cols=46 Identities=24% Similarity=0.517 Sum_probs=23.1
Q ss_pred CCcccccccccccccceecCC---C--CcccHHHHHHHhhCCCCCcccccc
Q 031971 49 EREEECGICLEICCKIVLPDC---N--HSMCMRCYRNWRARSQSCPFCRDS 94 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~C---g--H~fC~~Ci~~~~~~~~~CP~Cr~~ 94 (150)
+..-.||+|-....-.++..= | +.+|..|-..|......||.|-..
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 455799999987665544332 4 467999999998888899999554
No 126
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=65.82 E-value=8.1 Score=25.92 Aligned_cols=26 Identities=31% Similarity=0.653 Sum_probs=19.1
Q ss_pred CCcccHHHHHHHhh---------CCCCCccccccc
Q 031971 70 NHSMCMRCYRNWRA---------RSQSCPFCRDSL 95 (150)
Q Consensus 70 gH~fC~~Ci~~~~~---------~~~~CP~Cr~~~ 95 (150)
.-.||..|+..+.. ....||.||.--
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiC 71 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGIC 71 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCee
Confidence 56799999988443 346799998743
No 127
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=65.38 E-value=5.7 Score=32.01 Aligned_cols=53 Identities=6% Similarity=-0.153 Sum_probs=40.4
Q ss_pred CCcccCCCCcccccccccccccceecCCCC-cccHHHHHHHhhCCCCCcccccccc
Q 031971 42 KLSEIDIEREEECGICLEICCKIVLPDCNH-SMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 42 ~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH-~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
+.....+...+.|-.|-..+..-...+||| .||..|.. ..-...||.|.....
T Consensus 334 ~~~~~~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~~ 387 (394)
T KOG2113|consen 334 ESPTNGLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHNDH 387 (394)
T ss_pred ccccccchhhcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccce
Confidence 344455667889999998888888889999 48999976 345678999976543
No 128
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.64 E-value=1.1 Score=35.32 Aligned_cols=44 Identities=30% Similarity=0.653 Sum_probs=34.1
Q ss_pred ccccccccccccc------ceecC--------CCCcccHHHHHHHhh-CCCCCcccccc
Q 031971 51 EEECGICLEICCK------IVLPD--------CNHSMCMRCYRNWRA-RSQSCPFCRDS 94 (150)
Q Consensus 51 ~~~C~IC~~~~~~------p~~~~--------CgH~fC~~Ci~~~~~-~~~~CP~Cr~~ 94 (150)
...|.||...+.. |..+. |||+.|..|+...+. ....||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 4679999887772 45556 999999999999544 44789999874
No 129
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=64.38 E-value=2.9 Score=28.53 Aligned_cols=45 Identities=24% Similarity=0.506 Sum_probs=27.5
Q ss_pred Cccccccccccccc-----ceecCCCCcccHHHHHHH-hhCCCCCcccccc
Q 031971 50 REEECGICLEICCK-----IVLPDCNHSMCMRCYRNW-RARSQSCPFCRDS 94 (150)
Q Consensus 50 ~~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~-~~~~~~CP~Cr~~ 94 (150)
....|.+|...|.- .+-..|+|.+|..|-..- ......|.+|.+.
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHHH
Confidence 56689999876542 234689999999984431 1123468888653
No 130
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=64.08 E-value=5.6 Score=35.37 Aligned_cols=47 Identities=23% Similarity=0.599 Sum_probs=35.3
Q ss_pred CCcccccccccccccc----------eecCCCCcc--------------------cHHHHHHHhh--------CCCCCcc
Q 031971 49 EREEECGICLEICCKI----------VLPDCNHSM--------------------CMRCYRNWRA--------RSQSCPF 90 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p----------~~~~CgH~f--------------------C~~Ci~~~~~--------~~~~CP~ 90 (150)
.+.-+|.-|+..+.+| ..+.||..| |..|.+++.. +...||.
T Consensus 99 pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~ 178 (750)
T COG0068 99 PDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPK 178 (750)
T ss_pred CchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcc
Confidence 4557999999988875 235788777 9999988765 3468999
Q ss_pred ccccc
Q 031971 91 CRDSL 95 (150)
Q Consensus 91 Cr~~~ 95 (150)
|.-.+
T Consensus 179 CGP~~ 183 (750)
T COG0068 179 CGPHL 183 (750)
T ss_pred cCCCe
Confidence 96654
No 131
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=63.63 E-value=6.5 Score=31.70 Aligned_cols=45 Identities=24% Similarity=0.594 Sum_probs=35.9
Q ss_pred cccccccccccc----ceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 52 EECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 52 ~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
..|+||.+.... .+-.+||+..|..|+.........||.||.+..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 689999997632 234578888899998888888899999997764
No 132
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.12 E-value=3.3 Score=33.06 Aligned_cols=53 Identities=23% Similarity=0.420 Sum_probs=42.2
Q ss_pred cccCCCCcccccccccccccceec-CCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 44 SEIDIEREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 44 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
.+....+...|-+|...+..|... .|+|.||..|...|......||.|+....
T Consensus 98 dA~~~~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 98 DAGFQQDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKIS 151 (324)
T ss_pred hccccCCccceeeeeeeEEecccccCceeeeeecCCchhhhhhhccchhhcCcC
Confidence 333345677899999999988654 59999999999999988888998877653
No 133
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=61.31 E-value=1.7 Score=34.79 Aligned_cols=46 Identities=20% Similarity=0.467 Sum_probs=33.6
Q ss_pred CCcccccccccccccceec----CCC--CcccHHHHHHHhhCCCCCcccccc
Q 031971 49 EREEECGICLEICCKIVLP----DCN--HSMCMRCYRNWRARSQSCPFCRDS 94 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~----~Cg--H~fC~~Ci~~~~~~~~~CP~Cr~~ 94 (150)
+..-.||+|-....-.++. .=| +.+|..|-..|......||.|...
T Consensus 182 ~~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 182 ESRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 3455999999876544322 244 356899999999988999999763
No 134
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=60.24 E-value=11 Score=22.40 Aligned_cols=42 Identities=21% Similarity=0.460 Sum_probs=27.5
Q ss_pred cccccccccccce--ecCCCC--cccHHHHHHHhhCCCCCcccccccc
Q 031971 53 ECGICLEICCKIV--LPDCNH--SMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 53 ~C~IC~~~~~~p~--~~~CgH--~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
.|-.|-..+.... ..-|++ +||..|....+ ...||.|...+.
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv 52 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELV 52 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCccc
Confidence 4555655554321 334553 79999998865 467999988774
No 135
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=59.03 E-value=2.2 Score=25.88 Aligned_cols=31 Identities=19% Similarity=0.525 Sum_probs=15.7
Q ss_pred Ccccccccccccccce----ecCCCCcccHHHHHH
Q 031971 50 REEECGICLEICCKIV----LPDCNHSMCMRCYRN 80 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~ 80 (150)
+...|.+|...|.--. --.||+.||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~ 42 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQ 42 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-E
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCC
Confidence 4568999999985321 237999999988654
No 136
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=58.58 E-value=9.4 Score=29.33 Aligned_cols=28 Identities=25% Similarity=0.697 Sum_probs=22.4
Q ss_pred ccHHHHHHHhhCCCCCccccccccccCC
Q 031971 73 MCMRCYRNWRARSQSCPFCRDSLRRVNS 100 (150)
Q Consensus 73 fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 100 (150)
-|..|-.....+...||+|+......++
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsRSrnp 223 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSRSRNP 223 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccccccCCC
Confidence 3999988888888999999887754443
No 137
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=57.94 E-value=11 Score=22.04 Aligned_cols=25 Identities=24% Similarity=0.761 Sum_probs=13.6
Q ss_pred CCCCcccHHHHHHHhhCCCCCcccc
Q 031971 68 DCNHSMCMRCYRNWRARSQSCPFCR 92 (150)
Q Consensus 68 ~CgH~fC~~Ci~~~~~~~~~CP~Cr 92 (150)
.|++.||.+|=.=.-+.--.||-|.
T Consensus 26 ~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CCCCccccCcChhhhccccCCcCCC
Confidence 6889999999433333456788873
No 139
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=57.29 E-value=10 Score=34.00 Aligned_cols=44 Identities=16% Similarity=0.445 Sum_probs=32.6
Q ss_pred cccccccccccccee--cCCCCcccHHHHHHHhhCCCCCcc--ccccc
Q 031971 52 EECGICLEICCKIVL--PDCNHSMCMRCYRNWRARSQSCPF--CRDSL 95 (150)
Q Consensus 52 ~~C~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~CP~--Cr~~~ 95 (150)
..|.+|...+..-.. --|||.-|..|+..|......||. |...-
T Consensus 780 ~~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~~c 827 (839)
T KOG0269|consen 780 AKCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPHLC 827 (839)
T ss_pred cCceeecceeeeeEeecccccccccHHHHHHHHhcCCCCccccCCccc
Confidence 467777766654322 369999999999999998888887 65543
No 140
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.66 E-value=8.1 Score=34.19 Aligned_cols=44 Identities=30% Similarity=0.677 Sum_probs=35.7
Q ss_pred cccccccccccceecCCCC-cccHHHHHHHhh--C----CCCCcccccccc
Q 031971 53 ECGICLEICCKIVLPDCNH-SMCMRCYRNWRA--R----SQSCPFCRDSLR 96 (150)
Q Consensus 53 ~C~IC~~~~~~p~~~~CgH-~fC~~Ci~~~~~--~----~~~CP~Cr~~~~ 96 (150)
.|+||-....-+..-+||| ..|..|..+... . ...||.||..+.
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcccccccccCccccccee
Confidence 5899999888888899999 899999988443 3 456899998653
No 141
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=55.13 E-value=9.7 Score=21.92 Aligned_cols=30 Identities=20% Similarity=0.447 Sum_probs=21.2
Q ss_pred ccccccccccccc----eecCCCCcccHHHHHHH
Q 031971 52 EECGICLEICCKI----VLPDCNHSMCMRCYRNW 81 (150)
Q Consensus 52 ~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~ 81 (150)
..|.+|...|..- .-..||+.||..|....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCe
Confidence 4578887766642 23479999999997653
No 142
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=54.95 E-value=14 Score=21.81 Aligned_cols=30 Identities=17% Similarity=0.516 Sum_probs=22.9
Q ss_pred cccccccccccc--cce--ecCCCCcccHHHHHH
Q 031971 51 EEECGICLEICC--KIV--LPDCNHSMCMRCYRN 80 (150)
Q Consensus 51 ~~~C~IC~~~~~--~p~--~~~CgH~fC~~Ci~~ 80 (150)
...|++|-+.|. +.+ -..||-.++..|...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 457999999994 443 358999999999543
No 143
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=54.72 E-value=11 Score=29.12 Aligned_cols=26 Identities=27% Similarity=0.801 Sum_probs=20.8
Q ss_pred cHHHHHHHhhCCCCCccccccccccC
Q 031971 74 CMRCYRNWRARSQSCPFCRDSLRRVN 99 (150)
Q Consensus 74 C~~Ci~~~~~~~~~CP~Cr~~~~~~~ 99 (150)
|..|-.....+...||+|+......+
T Consensus 252 ClsChqqIHRNAPiCPlCKaKsRSrN 277 (286)
T KOG4451|consen 252 CLSCHQQIHRNAPICPLCKAKSRSRN 277 (286)
T ss_pred HHHHHHHHhcCCCCCcchhhccccCC
Confidence 88888887778899999988765433
No 144
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=54.18 E-value=7.4 Score=22.52 Aligned_cols=36 Identities=22% Similarity=0.546 Sum_probs=20.5
Q ss_pred cccccccccccccceecCCCCcccHHHHHHHhh--CCCCCccccc
Q 031971 51 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRA--RSQSCPFCRD 93 (150)
Q Consensus 51 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~ 93 (150)
.+.||.|.+.+... .+...|...-.. ....||+|..
T Consensus 2 ~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 2 SFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchh
Confidence 56899998854432 123333333222 3467999975
No 145
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=53.79 E-value=2 Score=20.72 Aligned_cols=9 Identities=33% Similarity=0.973 Sum_probs=4.0
Q ss_pred CCCCccccc
Q 031971 85 SQSCPFCRD 93 (150)
Q Consensus 85 ~~~CP~Cr~ 93 (150)
...||.|..
T Consensus 13 ~~fC~~CG~ 21 (23)
T PF13240_consen 13 AKFCPNCGT 21 (23)
T ss_pred CcchhhhCC
Confidence 344555433
No 146
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=53.55 E-value=3.7 Score=32.94 Aligned_cols=44 Identities=18% Similarity=0.474 Sum_probs=33.0
Q ss_pred Cccccccccccccccee-c--CCCC--cccHHHHHHHhhCCCCCccccc
Q 031971 50 REEECGICLEICCKIVL-P--DCNH--SMCMRCYRNWRARSQSCPFCRD 93 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~~-~--~CgH--~fC~~Ci~~~~~~~~~CP~Cr~ 93 (150)
....||+|-....-.+. . .=|+ .+|..|-..|......||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 56899999987654432 1 3343 4689999999988899999975
No 147
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=53.28 E-value=4.8 Score=34.99 Aligned_cols=24 Identities=29% Similarity=0.786 Sum_probs=18.2
Q ss_pred cCCCCcccHHHHHHHhhCCCCCccccc
Q 031971 67 PDCNHSMCMRCYRNWRARSQSCPFCRD 93 (150)
Q Consensus 67 ~~CgH~fC~~Ci~~~~~~~~~CP~Cr~ 93 (150)
..||+.||..|+. ..+..||.|-.
T Consensus 535 ~~C~avfH~~C~~---r~s~~CPrC~R 558 (580)
T KOG1829|consen 535 STCLAVFHKKCLR---RKSPCCPRCER 558 (580)
T ss_pred HHHHHHHHHHHHh---ccCCCCCchHH
Confidence 3699999999944 45566999944
No 148
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=52.32 E-value=10 Score=19.46 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=18.7
Q ss_pred ccccccccccc--eecCCCCcccHHHHHHHhhCCCCCccccccc
Q 031971 54 CGICLEICCKI--VLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 95 (150)
Q Consensus 54 C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 95 (150)
|..|.+.+... ....=+..|+..| ..|..|..++
T Consensus 2 C~~C~~~i~~~~~~~~~~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLRALGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEEeCCccccccC--------CCCcccCCcC
Confidence 66677666552 2223345555555 5566666554
No 149
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=52.32 E-value=19 Score=32.52 Aligned_cols=78 Identities=15% Similarity=0.307 Sum_probs=39.7
Q ss_pred ccCchhhHHHHHHHHHHHHhhcccccCCCcc-------cCCCCcccccccccccccc------ee-------cCCCCccc
Q 031971 15 GITDVEDKKQKEICDAKYKKKGRMDKGKLSE-------IDIEREEECGICLEICCKI------VL-------PDCNHSMC 74 (150)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~C~IC~~~~~~p------~~-------~~CgH~fC 74 (150)
++.+.+.++..+...+-+.+....+...... .-...++.|+-|...|... ++ ..|.|.-+
T Consensus 1088 ~l~~a~kq~ye~La~~iFsk~~p~d~~~~~vdc~~cg~~i~~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~ 1167 (1189)
T KOG2041|consen 1088 ELDDAEKQEYENLAFRIFSKNPPVDPNSAKVDCSVCGAKIDPYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAH 1167 (1189)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCCCccceeeeecCCcCCccCCCChhhcCcCceeeccCCccccceEEEccccccccc
Confidence 4555555555666666676666543332211 1113456777777766531 11 12333322
Q ss_pred HHHHHHHhhCCCCCcccccccc
Q 031971 75 MRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 75 ~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
..=|. +...||+|.....
T Consensus 1168 ~~EIs----~y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1168 QHEIS----KYNCCPLCHSMES 1185 (1189)
T ss_pred ccccc----ccccCccccChhh
Confidence 22211 3467999977653
No 150
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=51.95 E-value=2.2 Score=24.16 Aligned_cols=41 Identities=22% Similarity=0.368 Sum_probs=25.2
Q ss_pred cccccccccccceec---CCCCcccHHHHHHHhh------CCCCCccccc
Q 031971 53 ECGICLEICCKIVLP---DCNHSMCMRCYRNWRA------RSQSCPFCRD 93 (150)
Q Consensus 53 ~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~------~~~~CP~Cr~ 93 (150)
.|.||...-.+-.++ .|+..||..|+..-.. ....||.|+.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 377888733333333 6777899998765221 2467887753
No 151
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=50.64 E-value=2.2 Score=25.11 Aligned_cols=16 Identities=38% Similarity=1.171 Sum_probs=13.3
Q ss_pred CCCCcccHHHHHHHhh
Q 031971 68 DCNHSMCMRCYRNWRA 83 (150)
Q Consensus 68 ~CgH~fC~~Ci~~~~~ 83 (150)
.||+.||..|...|..
T Consensus 45 ~C~~~fC~~C~~~~H~ 60 (64)
T smart00647 45 KCGFSFCFRCKVPWHS 60 (64)
T ss_pred CCCCeECCCCCCcCCC
Confidence 6899999999887743
No 152
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=50.38 E-value=7.6 Score=27.25 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=15.8
Q ss_pred cccccccccceecCCCCcccHH
Q 031971 55 GICLEICCKIVLPDCNHSMCMR 76 (150)
Q Consensus 55 ~IC~~~~~~p~~~~CgH~fC~~ 76 (150)
-||.+.-.....-.|||+||..
T Consensus 61 fi~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 61 FICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred EEEecccccEEEEeccccccCh
Confidence 3666665555667999999964
No 153
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.70 E-value=14 Score=23.28 Aligned_cols=24 Identities=29% Similarity=0.660 Sum_probs=18.8
Q ss_pred CcccHHHHHHHhhCCCCCcccccccc
Q 031971 71 HSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 71 H~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
|+||..|....+ ...||.|...+.
T Consensus 29 cTFCadCae~~l--~g~CPnCGGelv 52 (84)
T COG3813 29 CTFCADCAENRL--HGLCPNCGGELV 52 (84)
T ss_pred eehhHhHHHHhh--cCcCCCCCchhh
Confidence 679999988654 367999987764
No 154
>PRK04023 DNA polymerase II large subunit; Validated
Probab=49.09 E-value=8.5 Score=35.67 Aligned_cols=46 Identities=20% Similarity=0.416 Sum_probs=32.4
Q ss_pred CcccccccccccccceecCCCC-----cccHHHHHHHhhCCCCCccccccccc
Q 031971 50 REEECGICLEICCKIVLPDCNH-----SMCMRCYRNWRARSQSCPFCRDSLRR 97 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~~~~CgH-----~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 97 (150)
....|+-|-..........||. .||..| .+......||.|......
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~C--G~~~~~y~CPKCG~El~~ 675 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRC--GIEVEEDECEKCGREPTP 675 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccc--cCcCCCCcCCCCCCCCCc
Confidence 4568888888765545557884 589999 333445679999887753
No 155
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.93 E-value=10 Score=34.12 Aligned_cols=41 Identities=27% Similarity=0.503 Sum_probs=28.7
Q ss_pred Ccccccccccccc-------cceecCCCCcccHHHHHHHhhCCCCCccc
Q 031971 50 REEECGICLEICC-------KIVLPDCNHSMCMRCYRNWRARSQSCPFC 91 (150)
Q Consensus 50 ~~~~C~IC~~~~~-------~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C 91 (150)
.+..|..|.+... ..+.+.|||.|+..|+.....+.. |-.|
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 3448999998655 235789999999999987443332 5544
No 156
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=48.32 E-value=5.9 Score=32.80 Aligned_cols=46 Identities=22% Similarity=0.647 Sum_probs=0.0
Q ss_pred cccccccccccc--------------c---c--eecCCCCcccHHHHHHHhhC---------CCCCcccccccc
Q 031971 51 EEECGICLEICC--------------K---I--VLPDCNHSMCMRCYRNWRAR---------SQSCPFCRDSLR 96 (150)
Q Consensus 51 ~~~C~IC~~~~~--------------~---p--~~~~CgH~fC~~Ci~~~~~~---------~~~CP~Cr~~~~ 96 (150)
.-+||+|+..-. + | ...||||..-.+...-|.+. ...||+|-.++.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 678999996422 1 2 24489997766666668661 257999988875
No 157
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.52 E-value=10 Score=24.93 Aligned_cols=12 Identities=33% Similarity=1.082 Sum_probs=10.7
Q ss_pred cccHHHHHHHhh
Q 031971 72 SMCMRCYRNWRA 83 (150)
Q Consensus 72 ~fC~~Ci~~~~~ 83 (150)
.||..|+..|..
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 499999999976
No 158
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=47.30 E-value=7.2 Score=22.60 Aligned_cols=11 Identities=36% Similarity=1.044 Sum_probs=5.9
Q ss_pred CCCcccccccc
Q 031971 86 QSCPFCRDSLR 96 (150)
Q Consensus 86 ~~CP~Cr~~~~ 96 (150)
..||+|..++.
T Consensus 21 ~~CPlC~r~l~ 31 (54)
T PF04423_consen 21 GCCPLCGRPLD 31 (54)
T ss_dssp EE-TTT--EE-
T ss_pred CcCCCCCCCCC
Confidence 38999999885
No 159
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=44.37 E-value=19 Score=28.18 Aligned_cols=46 Identities=20% Similarity=0.569 Sum_probs=35.2
Q ss_pred ccccccccccccc----ceecCCCC-----cccHHHHHHHhh--CCCCCcccccccc
Q 031971 51 EEECGICLEICCK----IVLPDCNH-----SMCMRCYRNWRA--RSQSCPFCRDSLR 96 (150)
Q Consensus 51 ~~~C~IC~~~~~~----p~~~~CgH-----~fC~~Ci~~~~~--~~~~CP~Cr~~~~ 96 (150)
...|-||...... +...+|.. ..+..|+..|.. +...|..|.....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 4789999986653 45667764 348999999998 6778999988664
No 160
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=43.76 E-value=19 Score=31.80 Aligned_cols=69 Identities=14% Similarity=0.235 Sum_probs=42.9
Q ss_pred CcccCCCCcccccccccccccce-ecCCCCcccHHHHHHHhh-----CCCCCccccccccccCCCCccccCchhhhhhh
Q 031971 43 LSEIDIEREEECGICLEICCKIV-LPDCNHSMCMRCYRNWRA-----RSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDL 115 (150)
Q Consensus 43 ~~~~~~~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~~~~~~~~~~~~~~~~~~i~~~ 115 (150)
.....+.-.+.|+|+...+.-|. -..|.|.-|.+-..- +. ....||+|.+... ...+..+..+.+++..
T Consensus 298 i~tt~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~-lq~n~~~pTW~CPVC~~~~~---~e~l~iD~~~~~iL~~ 372 (636)
T KOG2169|consen 298 IATTSLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSY-LQMNEQKPTWRCPVCQKAAP---FEGLIIDGYFLNILQS 372 (636)
T ss_pred ceeccceeEecCCcccceeecCCcccccccceecchhhh-HHhccCCCeeeCccCCcccc---ccchhhhHHHHHHHhh
Confidence 44555667899999988877765 468888766654321 21 2467999988763 2344444444444433
No 161
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=43.47 E-value=17 Score=27.13 Aligned_cols=39 Identities=28% Similarity=0.635 Sum_probs=25.8
Q ss_pred Ccccccccccc-cccce-------ecCCCCcccHHHHHHHhhCCCCCccccc
Q 031971 50 REEECGICLEI-CCKIV-------LPDCNHSMCMRCYRNWRARSQSCPFCRD 93 (150)
Q Consensus 50 ~~~~C~IC~~~-~~~p~-------~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~ 93 (150)
..+.|.+|.+. +.-|- -..|+-.||..|.. . ..||.|..
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~---~--~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR---K--KSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC---C--CCCCCcHh
Confidence 46788888752 22221 12688999999954 2 67999954
No 162
>PLN02189 cellulose synthase
Probab=43.33 E-value=17 Score=33.84 Aligned_cols=47 Identities=26% Similarity=0.709 Sum_probs=34.3
Q ss_pred Cccccccccccccc-----c--eecCCCCcccHHHHHH-HhhCCCCCcccccccc
Q 031971 50 REEECGICLEICCK-----I--VLPDCNHSMCMRCYRN-WRARSQSCPFCRDSLR 96 (150)
Q Consensus 50 ~~~~C~IC~~~~~~-----p--~~~~CgH~fC~~Ci~~-~~~~~~~CP~Cr~~~~ 96 (150)
....|.||-+.+.. + ..-.||--.|..|..- ..+++..||.|+....
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 34589999998662 2 1235777789999854 4557889999998875
No 163
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.19 E-value=24 Score=24.04 Aligned_cols=41 Identities=22% Similarity=0.376 Sum_probs=30.1
Q ss_pred ccccccccccccce--------------ecCCCCcccHHHHHHHhhCCCCCcccc
Q 031971 52 EECGICLEICCKIV--------------LPDCNHSMCMRCYRNWRARSQSCPFCR 92 (150)
Q Consensus 52 ~~C~IC~~~~~~p~--------------~~~CgH~fC~~Ci~~~~~~~~~CP~Cr 92 (150)
..|--|+..|.++. -..|++.||.+|-.=+.+.-..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 35888888776541 247899999999665666667799885
No 164
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=41.39 E-value=25 Score=28.48 Aligned_cols=47 Identities=28% Similarity=0.693 Sum_probs=29.9
Q ss_pred Ccccccccccccc--------------c---c--eecCCCCcccHHHHHHHhhC---------CCCCcccccccc
Q 031971 50 REEECGICLEICC--------------K---I--VLPDCNHSMCMRCYRNWRAR---------SQSCPFCRDSLR 96 (150)
Q Consensus 50 ~~~~C~IC~~~~~--------------~---p--~~~~CgH~fC~~Ci~~~~~~---------~~~CP~Cr~~~~ 96 (150)
.+-.||+|+..-. + | ...||||..-..=..=|.+. ...||+|-..+.
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 3678999986422 1 1 23489996555444447651 357999987764
No 165
>PRK11595 DNA utilization protein GntX; Provisional
Probab=39.16 E-value=26 Score=26.53 Aligned_cols=38 Identities=24% Similarity=0.509 Sum_probs=19.4
Q ss_pred ccccccccccccceecCCCCcccHHHHHHHhhCCCCCcccccc
Q 031971 52 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDS 94 (150)
Q Consensus 52 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~ 94 (150)
..|.+|...+... ....|..|...+......||.|..+
T Consensus 6 ~~C~~C~~~~~~~-----~~~lC~~C~~~l~~~~~~C~~Cg~~ 43 (227)
T PRK11595 6 GLCWLCRMPLALS-----HWGICSVCSRALRTLKTCCPQCGLP 43 (227)
T ss_pred CcCccCCCccCCC-----CCcccHHHHhhCCcccCcCccCCCc
Confidence 3577777654321 1235777766543223456666544
No 166
>PF15616 TerY-C: TerY-C metal binding domain
Probab=38.93 E-value=13 Score=26.03 Aligned_cols=49 Identities=16% Similarity=0.441 Sum_probs=35.9
Q ss_pred CcccCCCCcccccccccccccceecCCCCcccHHHHHHHhhCCCCCccccccccc
Q 031971 43 LSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 97 (150)
Q Consensus 43 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 97 (150)
.....+.....||-|-..+.-.+- .||+.||.. -.....||-|......
T Consensus 69 vntseL~g~PgCP~CGn~~~fa~C-~CGkl~Ci~-----g~~~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 69 VNTSELIGAPGCPHCGNQYAFAVC-GCGKLFCID-----GEGEVTCPWCGNEGSF 117 (131)
T ss_pred EehHHhcCCCCCCCCcChhcEEEe-cCCCEEEeC-----CCCCEECCCCCCeeee
Confidence 344455667899999988776655 899999863 1346789999887653
No 167
>PLN02436 cellulose synthase A
Probab=38.40 E-value=22 Score=33.24 Aligned_cols=47 Identities=26% Similarity=0.668 Sum_probs=34.0
Q ss_pred Cccccccccccccc-----ce--ecCCCCcccHHHHHH-HhhCCCCCcccccccc
Q 031971 50 REEECGICLEICCK-----IV--LPDCNHSMCMRCYRN-WRARSQSCPFCRDSLR 96 (150)
Q Consensus 50 ~~~~C~IC~~~~~~-----p~--~~~CgH~fC~~Ci~~-~~~~~~~CP~Cr~~~~ 96 (150)
....|.||-+.+.. +. .-.||--.|..|..- ..+.+..||.|+....
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 34589999998652 21 225777789999854 4457889999988875
No 168
>PF14353 CpXC: CpXC protein
Probab=38.38 E-value=22 Score=24.30 Aligned_cols=45 Identities=20% Similarity=0.177 Sum_probs=24.4
Q ss_pred ccccccccccccceecCCCCcccHHHHHHHhh---CCCCCcccccccc
Q 031971 52 EECGICLEICCKIVLPDCNHSMCMRCYRNWRA---RSQSCPFCRDSLR 96 (150)
Q Consensus 52 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~~~ 96 (150)
.+||-|...+...+.+.-.-..=..=....+. ....||.|...+.
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 46888887777544332222222222233333 2457999988764
No 169
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=37.37 E-value=20 Score=28.04 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=33.4
Q ss_pred cccccccccccccce-ecCCCCcccHHHHHHHhhC--CCCCccccc
Q 031971 51 EEECGICLEICCKIV-LPDCNHSMCMRCYRNWRAR--SQSCPFCRD 93 (150)
Q Consensus 51 ~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~ 93 (150)
.+.||+=...+..|+ ...|||.|=.+-+..+... ...||+=..
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC 221 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGC 221 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccC
Confidence 578998877888886 5699999999999997765 456776443
No 170
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=35.54 E-value=27 Score=32.70 Aligned_cols=47 Identities=28% Similarity=0.656 Sum_probs=34.4
Q ss_pred Cccccccccccccc-----c--eecCCCCcccHHHHHH-HhhCCCCCcccccccc
Q 031971 50 REEECGICLEICCK-----I--VLPDCNHSMCMRCYRN-WRARSQSCPFCRDSLR 96 (150)
Q Consensus 50 ~~~~C~IC~~~~~~-----p--~~~~CgH~fC~~Ci~~-~~~~~~~CP~Cr~~~~ 96 (150)
....|.||-+.+.. + ..-.||--.|..|..= ..+++..||.|+....
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 34589999987663 2 1236777789999843 4557889999988775
No 171
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=32.34 E-value=30 Score=18.74 Aligned_cols=22 Identities=18% Similarity=0.396 Sum_probs=10.3
Q ss_pred cccccccccc-ceecC-CCCcccH
Q 031971 54 CGICLEICCK-IVLPD-CNHSMCM 75 (150)
Q Consensus 54 C~IC~~~~~~-p~~~~-CgH~fC~ 75 (150)
|.+|.....- |..=. |+..||.
T Consensus 1 C~~C~~~~~l~~f~C~~C~~~FC~ 24 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCGNLFCG 24 (39)
T ss_pred CcccCCcccccCeECCccCCcccc
Confidence 3444443333 44333 6666665
No 172
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.43 E-value=28 Score=29.12 Aligned_cols=34 Identities=15% Similarity=0.376 Sum_probs=24.4
Q ss_pred CCcccccccccccccc------eecCCCCcccHHHHHHHh
Q 031971 49 EREEECGICLEICCKI------VLPDCNHSMCMRCYRNWR 82 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p------~~~~CgH~fC~~Ci~~~~ 82 (150)
...-.||-|.-.+... .-+.|||.||.-|-....
T Consensus 366 ~N~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~l~ 405 (445)
T KOG1814|consen 366 SNSKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAELLY 405 (445)
T ss_pred hcCCCCCcccceeecCCCccceeeccccccceeehhhhcC
Confidence 4456799888777643 356899999988876543
No 173
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.40 E-value=16 Score=26.69 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=14.8
Q ss_pred cccccccccccccc---eecCCCCccc
Q 031971 51 EEECGICLEICCKI---VLPDCNHSMC 74 (150)
Q Consensus 51 ~~~C~IC~~~~~~p---~~~~CgH~fC 74 (150)
.-+|.||++.+... ..+||-..|+
T Consensus 177 kGECvICLEdL~~GdtIARLPCLCIYH 203 (205)
T KOG0801|consen 177 KGECVICLEDLEAGDTIARLPCLCIYH 203 (205)
T ss_pred CCcEEEEhhhccCCCceeccceEEEee
Confidence 34677777776643 3567766554
No 174
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=30.93 E-value=33 Score=19.08 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=13.9
Q ss_pred ccccccccccceecCCCCcccHH
Q 031971 54 CGICLEICCKIVLPDCNHSMCMR 76 (150)
Q Consensus 54 C~IC~~~~~~p~~~~CgH~fC~~ 76 (150)
|..|...-.--+-+.|+|.+|..
T Consensus 2 C~~C~~~~~l~~CL~C~~~~c~~ 24 (50)
T smart00290 2 CSVCGTIENLWLCLTCGQVGCGR 24 (50)
T ss_pred cccCCCcCCeEEecCCCCcccCC
Confidence 56666444333556788888743
No 175
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=30.84 E-value=3.9 Score=23.99 Aligned_cols=31 Identities=29% Similarity=0.635 Sum_probs=16.9
Q ss_pred ccccc--cccccccc-------eec-CCCCcccHHHHHHHh
Q 031971 52 EECGI--CLEICCKI-------VLP-DCNHSMCMRCYRNWR 82 (150)
Q Consensus 52 ~~C~I--C~~~~~~p-------~~~-~CgH~fC~~Ci~~~~ 82 (150)
..|+- |...+... +.= .|++.||..|-..|.
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H 59 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPWH 59 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSESC
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCcccC
Confidence 36766 77766532 222 399999999977663
No 176
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=30.71 E-value=29 Score=31.13 Aligned_cols=47 Identities=23% Similarity=0.615 Sum_probs=34.2
Q ss_pred Ccccccccccccccce----------ecCCCCcc--------------------cHHHHHHHhh--------CCCCCccc
Q 031971 50 REEECGICLEICCKIV----------LPDCNHSM--------------------CMRCYRNWRA--------RSQSCPFC 91 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~----------~~~CgH~f--------------------C~~Ci~~~~~--------~~~~CP~C 91 (150)
+.-.|.-|+..+.+|. -+.||..| |..|..++.. ....||.|
T Consensus 67 D~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C~~C 146 (711)
T TIGR00143 67 DVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIACPRC 146 (711)
T ss_pred chhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccCCCC
Confidence 4568999999888752 34677666 9999999754 23579999
Q ss_pred ccccc
Q 031971 92 RDSLR 96 (150)
Q Consensus 92 r~~~~ 96 (150)
--.+.
T Consensus 147 gp~l~ 151 (711)
T TIGR00143 147 GPQLN 151 (711)
T ss_pred CcEEE
Confidence 66663
No 177
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=30.36 E-value=27 Score=27.62 Aligned_cols=48 Identities=19% Similarity=0.614 Sum_probs=35.1
Q ss_pred CCccccccccccccc-c--------eecCCCCcccHHHHHH-Hhh----------CCCCCcccccccc
Q 031971 49 EREEECGICLEICCK-I--------VLPDCNHSMCMRCYRN-WRA----------RSQSCPFCRDSLR 96 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~-p--------~~~~CgH~fC~~Ci~~-~~~----------~~~~CP~Cr~~~~ 96 (150)
.....|.+|-..+.. | -.++|...+|..-..+ |+- ..+.||.|.+.|.
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFA 226 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFA 226 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhc
Confidence 456789999877663 1 2458888888888876 875 2368999998874
No 178
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=30.05 E-value=9.5 Score=21.01 Aligned_cols=24 Identities=21% Similarity=0.559 Sum_probs=13.0
Q ss_pred CCCCcccHHHHHHHh-hCCCCCccccc
Q 031971 68 DCNHSMCMRCYRNWR-ARSQSCPFCRD 93 (150)
Q Consensus 68 ~CgH~fC~~Ci~~~~-~~~~~CP~Cr~ 93 (150)
.|||.|-..- ... .....||.|..
T Consensus 10 ~Cg~~fe~~~--~~~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQ--SISEDDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEE--EcCCCCCCcCCCCCC
Confidence 5666653321 111 13567999987
No 179
>PLN02400 cellulose synthase
Probab=28.73 E-value=33 Score=32.18 Aligned_cols=47 Identities=26% Similarity=0.698 Sum_probs=34.1
Q ss_pred Cccccccccccccc-----c--eecCCCCcccHHHHHH-HhhCCCCCcccccccc
Q 031971 50 REEECGICLEICCK-----I--VLPDCNHSMCMRCYRN-WRARSQSCPFCRDSLR 96 (150)
Q Consensus 50 ~~~~C~IC~~~~~~-----p--~~~~CgH~fC~~Ci~~-~~~~~~~CP~Cr~~~~ 96 (150)
....|.||-+.+.. + ..-.|+--.|..|..= ..+++..||.|+....
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 34589999987663 2 2336777789999843 4457889999988775
No 180
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=28.60 E-value=50 Score=30.18 Aligned_cols=47 Identities=26% Similarity=0.665 Sum_probs=33.5
Q ss_pred CCccccccccccccc--ceecCCCCcccHHHHHHHhh------CCCCCccccccc
Q 031971 49 EREEECGICLEICCK--IVLPDCNHSMCMRCYRNWRA------RSQSCPFCRDSL 95 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~--p~~~~CgH~fC~~Ci~~~~~------~~~~CP~Cr~~~ 95 (150)
.....|-.|.....+ -+-..||+.+|..|+..|.- ....|+.|+..-
T Consensus 227 g~~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C 281 (889)
T KOG1356|consen 227 GIREMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKC 281 (889)
T ss_pred CcchhhhhhcccccceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhc
Confidence 345789999987775 35678999999999999941 224566665443
No 181
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=28.39 E-value=19 Score=20.56 Aligned_cols=10 Identities=30% Similarity=0.717 Sum_probs=5.4
Q ss_pred CCCccccccc
Q 031971 86 QSCPFCRDSL 95 (150)
Q Consensus 86 ~~CP~Cr~~~ 95 (150)
..|-.|+.++
T Consensus 27 f~C~~C~~~l 36 (58)
T PF00412_consen 27 FKCSKCGKPL 36 (58)
T ss_dssp SBETTTTCBT
T ss_pred cccCCCCCcc
Confidence 4455555554
No 182
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.30 E-value=23 Score=29.70 Aligned_cols=31 Identities=23% Similarity=0.554 Sum_probs=20.6
Q ss_pred ccccccccc---cccceecCCCCcccHHHHHHHh
Q 031971 52 EECGICLEI---CCKIVLPDCNHSMCMRCYRNWR 82 (150)
Q Consensus 52 ~~C~IC~~~---~~~p~~~~CgH~fC~~Ci~~~~ 82 (150)
..|+..... ...++.-.|||.||..|...|.
T Consensus 164 ~~C~~av~~~~~~~~~v~C~~g~~FC~~C~~~~H 197 (444)
T KOG1815|consen 164 PGCGLAVKFGSLESVEVDCGCGHEFCFACGEESH 197 (444)
T ss_pred CCCCceeeccCCCccceeCCCCchhHhhcccccc
Confidence 455544432 3345677899999999987664
No 183
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=27.42 E-value=38 Score=19.52 Aligned_cols=8 Identities=50% Similarity=1.776 Sum_probs=5.5
Q ss_pred CCCCCccc
Q 031971 84 RSQSCPFC 91 (150)
Q Consensus 84 ~~~~CP~C 91 (150)
....||.|
T Consensus 48 ~~~~CP~C 55 (55)
T PF14311_consen 48 RGKGCPYC 55 (55)
T ss_pred CCCCCCCC
Confidence 45678877
No 184
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=26.84 E-value=49 Score=17.04 Aligned_cols=11 Identities=27% Similarity=0.785 Sum_probs=7.4
Q ss_pred CCCCCcccccc
Q 031971 84 RSQSCPFCRDS 94 (150)
Q Consensus 84 ~~~~CP~Cr~~ 94 (150)
....||.|...
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 34578888664
No 186
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=26.75 E-value=46 Score=31.20 Aligned_cols=47 Identities=21% Similarity=0.588 Sum_probs=34.6
Q ss_pred Cccccccccccccc-----c--eecCCCCcccHHHHHH-HhhCCCCCcccccccc
Q 031971 50 REEECGICLEICCK-----I--VLPDCNHSMCMRCYRN-WRARSQSCPFCRDSLR 96 (150)
Q Consensus 50 ~~~~C~IC~~~~~~-----p--~~~~CgH~fC~~Ci~~-~~~~~~~CP~Cr~~~~ 96 (150)
....|.||-+.+.. + ..-.|+--.|..|..- ..+++..||.|+....
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 45689999987663 2 1236777789999843 4457889999988875
No 187
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=25.31 E-value=50 Score=25.42 Aligned_cols=19 Identities=32% Similarity=0.779 Sum_probs=11.3
Q ss_pred ccccccccccceecCCCCcccHHHHHH
Q 031971 54 CGICLEICCKIVLPDCNHSMCMRCYRN 80 (150)
Q Consensus 54 C~IC~~~~~~p~~~~CgH~fC~~Ci~~ 80 (150)
|+||. .+-.+.+|..|+..
T Consensus 2 C~iC~--------~~~~~~~C~~C~~~ 20 (302)
T PF10186_consen 2 CPICH--------NSRRRFYCANCVNN 20 (302)
T ss_pred CCCCC--------CCCCCeECHHHHHH
Confidence 66666 33344567777665
No 188
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=24.42 E-value=53 Score=26.75 Aligned_cols=42 Identities=19% Similarity=0.449 Sum_probs=26.8
Q ss_pred cccccccccccccc---eecCCCCcccHHHHHHHhhCCCCCcccc
Q 031971 51 EEECGICLEICCKI---VLPDCNHSMCMRCYRNWRARSQSCPFCR 92 (150)
Q Consensus 51 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr 92 (150)
...|-.|.+..... .--.|.+.||.+|-.=..+.--.||-|.
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred CcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 34488885554433 2347889999999544444456788886
No 189
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.33 E-value=51 Score=28.43 Aligned_cols=44 Identities=25% Similarity=0.759 Sum_probs=34.5
Q ss_pred CCcccccccccccccceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 49 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
+....|.+|.... .....+|. +..|+..|...+..||.|+....
T Consensus 477 ~~~~~~~~~~~~~-~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~ 520 (543)
T KOG0802|consen 477 EPNDVCAICYQEM-SARITPCS---HALCLRKWLYVQEVCPLCHTYMK 520 (543)
T ss_pred cccCcchHHHHHH-Hhcccccc---chhHHHhhhhhccccCCCchhhh
Confidence 3467899999888 55566777 56777889988899999988764
No 190
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.77 E-value=42 Score=29.93 Aligned_cols=40 Identities=15% Similarity=0.320 Sum_probs=27.4
Q ss_pred cccccccccccc----cceecCCCCcccHHHHHHHhhCCCCCccccc
Q 031971 51 EEECGICLEICC----KIVLPDCNHSMCMRCYRNWRARSQSCPFCRD 93 (150)
Q Consensus 51 ~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~ 93 (150)
..+|-+|...-. -+.++.|+-.||..|... -...||.|--
T Consensus 654 ~r~C~vcq~pedse~~v~rt~~C~~~~C~~c~~~---~~~~~~vC~~ 697 (717)
T KOG3726|consen 654 IRTCKVCQLPEDSETDVCRTTFCYTPYCVACSLD---YASISEVCGP 697 (717)
T ss_pred HHHHHHhcCCcCccccccCccccCCcchHhhhhh---hhccCcccCc
Confidence 456888875332 245779999999999444 3456888844
No 191
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=23.63 E-value=42 Score=26.05 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=30.4
Q ss_pred cccccccccccccce-ecCCCCcccHHHHHHHhhC--CCCCcc
Q 031971 51 EEECGICLEICCKIV-LPDCNHSMCMRCYRNWRAR--SQSCPF 90 (150)
Q Consensus 51 ~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~--~~~CP~ 90 (150)
+.+|+|=+....-|+ ...|.|.|=.+-|...++. ...||.
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~ 231 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPR 231 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecch
Confidence 578999776666664 5799999999999998874 345653
No 192
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=23.39 E-value=37 Score=28.34 Aligned_cols=32 Identities=22% Similarity=0.658 Sum_probs=25.2
Q ss_pred cccccccccccccce--ecCCCCcccHHHHHHHh
Q 031971 51 EEECGICLEICCKIV--LPDCNHSMCMRCYRNWR 82 (150)
Q Consensus 51 ~~~C~IC~~~~~~p~--~~~CgH~fC~~Ci~~~~ 82 (150)
...|+||+-+..... +.-|....|..|+.++.
T Consensus 74 ~~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~~ 107 (482)
T KOG2789|consen 74 KTECPICFLYYPSAKNLVRCCSETICGECFAPFG 107 (482)
T ss_pred cccCceeeeecccccchhhhhccchhhhheeccc
Confidence 468999998877643 45788999999987754
No 193
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=22.89 E-value=63 Score=17.13 Aligned_cols=23 Identities=22% Similarity=0.635 Sum_probs=11.4
Q ss_pred ccHHHHHHHhh--------CCCCCccccccc
Q 031971 73 MCMRCYRNWRA--------RSQSCPFCRDSL 95 (150)
Q Consensus 73 fC~~Ci~~~~~--------~~~~CP~Cr~~~ 95 (150)
.|..|+.++.. ...+|+.|--.+
T Consensus 1 lC~~C~~Ey~~p~~RR~~~~~isC~~CGPr~ 31 (35)
T PF07503_consen 1 LCDDCLKEYFDPSNRRFHYQFISCTNCGPRY 31 (35)
T ss_dssp --HHHHHHHCSTTSTTTT-TT--BTTCC-SC
T ss_pred CCHHHHHHHcCCCCCcccCcCccCCCCCCCE
Confidence 36777777643 235688885544
No 194
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=22.84 E-value=3e+02 Score=21.88 Aligned_cols=46 Identities=20% Similarity=0.538 Sum_probs=25.5
Q ss_pred cHHHHHHHhh-CCCCCccccccccccCCCCccccCchhhhhhhhhhcHHHHHHHHHHHhcC
Q 031971 74 CMRCYRNWRA-RSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKL 133 (150)
Q Consensus 74 C~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~ 133 (150)
+.+|...|.- -...|| |..+.+ .-.+ +..++.+.++.++..|.++=
T Consensus 58 HrdCFEK~HlIanQ~~p--rsk~sk----------StYe--~vK~~lSkkinwivqyAQnk 104 (285)
T PF06937_consen 58 HRDCFEKYHLIANQDCP--RSKLSK----------STYE--EVKTILSKKINWIVQYAQNK 104 (285)
T ss_pred hHHHHHHHHHHHcCCCC--cccccc----------chHH--HHHHHHHHHHHHHHHHHhcc
Confidence 4788888644 456677 332221 1111 12225566778888877754
No 195
>KOG1140 consensus N-end rule pathway, recognition component UBR1 [Posttranslational modification, protein turnover, chaperones]
Probab=22.48 E-value=1.1e+02 Score=30.52 Aligned_cols=33 Identities=27% Similarity=0.721 Sum_probs=24.4
Q ss_pred eecCCCCcccHHHHHHHhh--------------------CCCCCccccccccc
Q 031971 65 VLPDCNHSMCMRCYRNWRA--------------------RSQSCPFCRDSLRR 97 (150)
Q Consensus 65 ~~~~CgH~fC~~Ci~~~~~--------------------~~~~CP~Cr~~~~~ 97 (150)
+...|||..+..|.+++.+ +...||.|+.....
T Consensus 1147 ~~s~c~h~mh~~c~~~~~~a~r~~~n~~~~~l~~~~se~~l~lCp~c~slsn~ 1199 (1738)
T KOG1140|consen 1147 VLSSCGHHMHYGCFKRYVQAKRFRENARTAPLCQHYSENGLFLCPLCKSLSNV 1199 (1738)
T ss_pred eeeccCCcchHHHHHHHHHHHHHHHHhhhcCcccccccCCcccCCchHhhhhc
Confidence 3457999999999988654 12469999886643
No 196
>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.
Probab=22.19 E-value=51 Score=18.05 Aligned_cols=20 Identities=20% Similarity=0.476 Sum_probs=8.7
Q ss_pred cccccccceecC-CCCcccHH
Q 031971 57 CLEICCKIVLPD-CNHSMCMR 76 (150)
Q Consensus 57 C~~~~~~p~~~~-CgH~fC~~ 76 (150)
|......|+.=+ |+..||..
T Consensus 6 C~~~~~~~~~C~~C~~~FC~~ 26 (43)
T PF01428_consen 6 CKKKDFLPFKCKHCGKSFCLK 26 (43)
T ss_dssp T--BCTSHEE-TTTS-EE-TT
T ss_pred CcCccCCCeECCCCCcccCcc
Confidence 555555555433 77777764
No 197
>COG5162 Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=22.13 E-value=60 Score=23.72 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=22.2
Q ss_pred hcHHHHHHHHHHHhcCCCCCCCcceeec
Q 031971 118 ISRENLKRLFMYIDKLPFITPNPTLVSY 145 (150)
Q Consensus 118 ~~~~~~~~l~~~~~~~p~~~~~~~~~~~ 145 (150)
+-+..+..+...+.+.|-++||+|++-|
T Consensus 70 ~Kdktlee~l~~mDsy~PliPd~v~DYy 97 (197)
T COG5162 70 MKDKTLEELLQNMDSYTPLIPDSVTDYY 97 (197)
T ss_pred hhHHHHHHHHHhcccCCCCccHHHHHHH
Confidence 3455677888888999999999998665
No 198
>PLN02195 cellulose synthase A
Probab=22.04 E-value=83 Score=29.37 Aligned_cols=46 Identities=17% Similarity=0.452 Sum_probs=33.1
Q ss_pred ccccccccccccc-----c--eecCCCCcccHHHHHH-HhhCCCCCcccccccc
Q 031971 51 EEECGICLEICCK-----I--VLPDCNHSMCMRCYRN-WRARSQSCPFCRDSLR 96 (150)
Q Consensus 51 ~~~C~IC~~~~~~-----p--~~~~CgH~fC~~Ci~~-~~~~~~~CP~Cr~~~~ 96 (150)
...|.||-+.+.. + ..-.||---|..|..= -.+++..||.|+....
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 4579999986552 2 2346888889999843 3346889999988765
No 199
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=21.97 E-value=54 Score=25.25 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=14.6
Q ss_pred cccccccccccc-c--eecCCCCcc
Q 031971 52 EECGICLEICCK-I--VLPDCNHSM 73 (150)
Q Consensus 52 ~~C~IC~~~~~~-p--~~~~CgH~f 73 (150)
+.||+|...+.. . ..-+.||+|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCC
Confidence 679999998862 2 233456766
No 200
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=21.84 E-value=52 Score=28.77 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=25.2
Q ss_pred CCccccccccccccc-------------ceecCCCCcccHHHHHHH
Q 031971 49 EREEECGICLEICCK-------------IVLPDCNHSMCMRCYRNW 81 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~-------------p~~~~CgH~fC~~Ci~~~ 81 (150)
+....|+||.+.|.. .+.+.=|-.||..|+..-
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeeccCceeeccccchH
Confidence 567899999998873 455556888899998763
No 201
>PRK01343 zinc-binding protein; Provisional
Probab=21.54 E-value=47 Score=19.81 Aligned_cols=12 Identities=25% Similarity=0.769 Sum_probs=9.6
Q ss_pred CCCCcccccccc
Q 031971 85 SQSCPFCRDSLR 96 (150)
Q Consensus 85 ~~~CP~Cr~~~~ 96 (150)
...||.|++++.
T Consensus 9 ~~~CP~C~k~~~ 20 (57)
T PRK01343 9 TRPCPECGKPST 20 (57)
T ss_pred CCcCCCCCCcCc
Confidence 467999999864
No 202
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=21.48 E-value=67 Score=19.48 Aligned_cols=10 Identities=30% Similarity=0.982 Sum_probs=6.9
Q ss_pred CCCccccccc
Q 031971 86 QSCPFCRDSL 95 (150)
Q Consensus 86 ~~CP~Cr~~~ 95 (150)
..||.|++++
T Consensus 7 v~CP~C~k~~ 16 (62)
T PRK00418 7 VNCPTCGKPV 16 (62)
T ss_pred ccCCCCCCcc
Confidence 4677777765
No 203
>PF12132 DUF3587: Protein of unknown function (DUF3587); InterPro: IPR021982 This entry is represented by Hyposoter fugitivus ichnovirus, Gp7; it is a family of uncharacterised viral proteins.
Probab=21.36 E-value=73 Score=23.96 Aligned_cols=25 Identities=24% Similarity=0.590 Sum_probs=17.5
Q ss_pred cccccceecCCC----CcccHHHHHHHhh
Q 031971 59 EICCKIVLPDCN----HSMCMRCYRNWRA 83 (150)
Q Consensus 59 ~~~~~p~~~~Cg----H~fC~~Ci~~~~~ 83 (150)
+.+..|....|. |.||..++..|+.
T Consensus 149 ~~f~~p~~~~C~~gHfHHyCs~HV~~WL~ 177 (199)
T PF12132_consen 149 EKFVKPSVDECEYGHFHHYCSQHVNSWLN 177 (199)
T ss_pred ccccCCCCCCCCCCCcChhhHHHHHHHHH
Confidence 344556555565 6789999999986
No 204
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=21.17 E-value=1.8e+02 Score=23.19 Aligned_cols=45 Identities=18% Similarity=0.521 Sum_probs=32.3
Q ss_pred CCccccccccccccccee----cCCCCcc--cHHHHHHHhhCCCCCccccc
Q 031971 49 EREEECGICLEICCKIVL----PDCNHSM--CMRCYRNWRARSQSCPFCRD 93 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~----~~CgH~f--C~~Ci~~~~~~~~~CP~Cr~ 93 (150)
+.-..||+|-......++ ..=|-.| |.-|...|......|-.|..
T Consensus 183 e~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR~KC~nC~~ 233 (308)
T COG3058 183 ESRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVRVKCSNCEQ 233 (308)
T ss_pred cccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHHHHHhccccc
Confidence 345689999987765432 2334333 89999999988888888855
No 205
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=21.10 E-value=19 Score=18.02 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=4.3
Q ss_pred cccccccccccc
Q 031971 53 ECGICLEICCKI 64 (150)
Q Consensus 53 ~C~IC~~~~~~p 64 (150)
.|+.|...+.+.
T Consensus 3 ~C~rC~~~~~~~ 14 (30)
T PF06827_consen 3 KCPRCWNYIEDI 14 (30)
T ss_dssp B-TTT--BBEEE
T ss_pred cCccCCCcceEe
Confidence 355555554443
No 206
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=20.88 E-value=52 Score=29.22 Aligned_cols=48 Identities=23% Similarity=0.421 Sum_probs=33.2
Q ss_pred CCCcccccccccccccc-----eecCCCCcccHHHHHHHhh-----CCCCCccccccc
Q 031971 48 IEREEECGICLEICCKI-----VLPDCNHSMCMRCYRNWRA-----RSQSCPFCRDSL 95 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~~ 95 (150)
....+.|++|-..=..+ ..-.||-.++..|+..|.. +...||-||...
T Consensus 15 ~~~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe 72 (694)
T KOG4443|consen 15 IIVCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCE 72 (694)
T ss_pred hhhhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeee
Confidence 34567788887654432 2237888899999998876 346788887654
No 207
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=20.77 E-value=49 Score=19.71 Aligned_cols=10 Identities=30% Similarity=1.125 Sum_probs=4.1
Q ss_pred CCcccccccc
Q 031971 87 SCPFCRDSLR 96 (150)
Q Consensus 87 ~CP~Cr~~~~ 96 (150)
.||.|++++.
T Consensus 4 ~CP~C~k~~~ 13 (57)
T PF03884_consen 4 KCPICGKPVE 13 (57)
T ss_dssp E-TTT--EEE
T ss_pred cCCCCCCeec
Confidence 4666666654
No 208
>PLN02248 cellulose synthase-like protein
Probab=20.54 E-value=82 Score=29.86 Aligned_cols=29 Identities=24% Similarity=0.816 Sum_probs=24.7
Q ss_pred CCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 68 DCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 68 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
.|++..|.+|...-.+....||-|+.+..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKSGGICPGCKEPYK 177 (1135)
T ss_pred cccchhHHhHhhhhhhcCCCCCCCccccc
Confidence 57778899999987777889999998874
Done!