Query 031971
Match_columns 150
No_of_seqs 199 out of 1486
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 12:29:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031971.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031971hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t1h_A Gspef-atpub14, armadill 99.6 6.1E-16 2.1E-20 97.9 5.6 66 47-115 4-70 (78)
2 4ayc_A E3 ubiquitin-protein li 99.6 1.8E-16 6.2E-21 111.0 1.5 49 49-97 51-99 (138)
3 3ztg_A E3 ubiquitin-protein li 99.6 1.4E-15 4.9E-20 99.1 5.5 69 45-115 7-78 (92)
4 2ckl_A Polycomb group ring fin 99.6 1E-15 3.5E-20 102.8 4.4 92 47-138 11-106 (108)
5 2egp_A Tripartite motif-contai 99.6 6.2E-16 2.1E-20 97.9 2.6 63 46-111 7-76 (79)
6 2djb_A Polycomb group ring fin 99.6 3.3E-15 1.1E-19 93.3 5.7 54 45-98 9-63 (72)
7 2kr4_A Ubiquitin conjugation f 99.6 3.4E-15 1.2E-19 96.5 4.9 67 46-115 9-75 (85)
8 3lrq_A E3 ubiquitin-protein li 99.6 1.2E-15 4E-20 101.3 2.6 50 48-97 19-70 (100)
9 2ecw_A Tripartite motif-contai 99.6 3.6E-15 1.2E-19 95.3 4.8 64 46-112 14-83 (85)
10 3ng2_A RNF4, snurf, ring finge 99.5 3.3E-15 1.1E-19 92.7 3.9 51 48-98 7-64 (71)
11 2csy_A Zinc finger protein 183 99.5 6E-15 2E-19 94.1 5.1 50 47-96 11-60 (81)
12 3fl2_A E3 ubiquitin-protein li 99.5 3.5E-15 1.2E-19 102.5 4.2 66 48-115 49-115 (124)
13 2ecy_A TNF receptor-associated 99.5 9.2E-15 3.1E-19 89.7 5.5 52 46-97 10-62 (66)
14 2yur_A Retinoblastoma-binding 99.5 6.6E-15 2.3E-19 92.5 4.8 52 45-96 9-63 (74)
15 2ct2_A Tripartite motif protei 99.5 9.2E-15 3.2E-19 94.2 5.5 55 44-98 8-69 (88)
16 2kre_A Ubiquitin conjugation f 99.5 8.6E-15 2.9E-19 97.4 5.4 67 46-115 24-90 (100)
17 2ysl_A Tripartite motif-contai 99.5 1.1E-14 3.9E-19 90.8 5.6 52 46-97 15-69 (73)
18 2ecv_A Tripartite motif-contai 99.5 4.8E-15 1.6E-19 94.7 4.0 63 46-111 14-82 (85)
19 2d8t_A Dactylidin, ring finger 99.5 9.4E-15 3.2E-19 91.0 4.0 50 48-97 12-61 (71)
20 1wgm_A Ubiquitin conjugation f 99.5 2.1E-14 7.3E-19 95.1 6.0 67 46-115 17-84 (98)
21 2y43_A E3 ubiquitin-protein li 99.5 6.8E-15 2.3E-19 97.2 3.5 64 49-115 20-84 (99)
22 2ea6_A Ring finger protein 4; 99.5 1.5E-14 5.1E-19 89.1 4.0 51 46-96 10-67 (69)
23 2ysj_A Tripartite motif-contai 99.5 3.7E-14 1.3E-18 86.1 5.3 46 46-91 15-63 (63)
24 2xeu_A Ring finger protein 4; 99.5 1.1E-14 3.8E-19 88.4 2.3 48 50-97 2-56 (64)
25 1jm7_A BRCA1, breast cancer ty 99.5 8.1E-14 2.8E-18 93.7 6.5 63 50-115 20-85 (112)
26 3l11_A E3 ubiquitin-protein li 99.5 8.8E-15 3E-19 99.2 1.6 69 47-115 11-84 (115)
27 2kiz_A E3 ubiquitin-protein li 99.5 6.8E-14 2.3E-18 86.4 5.5 50 48-97 11-63 (69)
28 1z6u_A NP95-like ring finger p 99.5 3E-14 1E-18 101.2 4.3 66 48-115 75-141 (150)
29 1iym_A EL5; ring-H2 finger, ub 99.5 3.4E-14 1.2E-18 83.9 3.5 49 48-96 2-54 (55)
30 2ecn_A Ring finger protein 141 99.5 4.9E-14 1.7E-18 87.3 4.1 50 47-97 11-60 (70)
31 2l0b_A E3 ubiquitin-protein li 99.5 6.8E-14 2.3E-18 91.3 4.9 50 47-96 36-88 (91)
32 2ecj_A Tripartite motif-contai 99.4 1.1E-13 3.7E-18 82.5 4.9 46 46-91 10-58 (58)
33 2ect_A Ring finger protein 126 99.4 9.5E-14 3.3E-18 87.7 4.8 52 47-98 11-65 (78)
34 3hct_A TNF receptor-associated 99.4 6.1E-14 2.1E-18 95.6 3.5 53 45-97 12-65 (118)
35 2ckl_B Ubiquitin ligase protei 99.4 4.2E-14 1.4E-18 101.6 2.7 66 48-115 51-118 (165)
36 1g25_A CDK-activating kinase a 99.4 9.1E-14 3.1E-18 85.0 3.7 48 50-97 2-55 (65)
37 2ecm_A Ring finger and CHY zin 99.4 8.4E-14 2.9E-18 82.1 2.8 48 49-96 3-54 (55)
38 1chc_A Equine herpes virus-1 r 99.4 7.6E-14 2.6E-18 85.9 2.7 49 49-97 3-52 (68)
39 1jm7_B BARD1, BRCA1-associated 99.4 7.3E-14 2.5E-18 95.0 2.5 62 49-115 20-82 (117)
40 2ep4_A Ring finger protein 24; 99.4 2.3E-13 7.9E-18 85.1 4.6 51 47-97 11-64 (74)
41 1x4j_A Ring finger protein 38; 99.4 1E-13 3.5E-18 87.0 2.4 48 49-96 21-71 (75)
42 2c2l_A CHIP, carboxy terminus 99.4 3.8E-13 1.3E-17 103.0 5.8 66 46-114 203-269 (281)
43 3knv_A TNF receptor-associated 99.4 1.5E-13 5.2E-18 96.6 3.2 53 44-96 24-77 (141)
44 4ap4_A E3 ubiquitin ligase RNF 99.4 1.6E-13 5.4E-18 94.4 3.1 57 49-105 5-68 (133)
45 1rmd_A RAG1; V(D)J recombinati 99.4 1.8E-13 6.1E-18 92.8 2.9 50 48-97 20-70 (116)
46 2yu4_A E3 SUMO-protein ligase 99.4 2.4E-13 8.2E-18 89.2 3.2 65 48-115 4-78 (94)
47 1e4u_A Transcriptional repress 99.3 1.2E-12 4.1E-17 83.1 5.6 51 47-97 7-62 (78)
48 2f42_A STIP1 homology and U-bo 99.3 1.4E-12 4.9E-17 94.9 6.5 67 46-115 101-168 (179)
49 1v87_A Deltex protein 2; ring- 99.3 6E-13 2.1E-17 89.8 4.0 48 50-97 24-94 (114)
50 2ecl_A Ring-box protein 2; RNF 99.3 9.6E-13 3.3E-17 84.0 3.8 47 50-96 14-75 (81)
51 1bor_A Transcription factor PM 99.3 3.8E-13 1.3E-17 80.1 0.9 45 49-96 4-48 (56)
52 3hcs_A TNF receptor-associated 99.3 1.5E-12 5.1E-17 93.8 3.4 53 45-97 12-65 (170)
53 4ic3_A E3 ubiquitin-protein li 99.2 1.5E-12 5.2E-17 81.7 1.4 45 49-97 22-67 (74)
54 3dpl_R Ring-box protein 1; ubi 99.2 5.8E-12 2E-16 84.4 4.1 47 50-96 36-100 (106)
55 2vje_A E3 ubiquitin-protein li 99.2 4.4E-12 1.5E-16 77.5 2.7 49 49-97 6-57 (64)
56 4ap4_A E3 ubiquitin ligase RNF 99.2 2.8E-12 9.6E-17 88.1 1.8 50 49-98 70-126 (133)
57 3htk_C E3 SUMO-protein ligase 99.2 7.8E-12 2.7E-16 95.5 4.0 67 46-115 176-247 (267)
58 2vje_B MDM4 protein; proto-onc 99.2 7.6E-12 2.6E-16 76.2 2.5 48 50-97 6-56 (63)
59 2y1n_A E3 ubiquitin-protein li 99.2 1.6E-11 5.5E-16 98.7 4.5 48 50-97 331-379 (389)
60 2ecg_A Baculoviral IAP repeat- 99.1 1.9E-11 6.5E-16 76.7 2.4 44 50-97 24-68 (75)
61 2yho_A E3 ubiquitin-protein li 99.1 1.2E-11 4.1E-16 78.6 1.2 45 50-98 17-62 (79)
62 4a0k_B E3 ubiquitin-protein li 99.0 3.1E-11 1.1E-15 82.2 0.2 47 50-96 47-111 (117)
63 2ea5_A Cell growth regulator w 99.0 2.7E-10 9.2E-15 70.3 3.5 45 49-97 13-58 (68)
64 2d8s_A Cellular modulator of i 98.9 8.3E-10 2.8E-14 70.2 4.0 49 48-96 12-69 (80)
65 2bay_A PRE-mRNA splicing facto 98.9 3.7E-10 1.3E-14 68.2 2.0 48 51-98 3-51 (61)
66 3t6p_A Baculoviral IAP repeat- 98.9 3.5E-10 1.2E-14 90.0 0.6 45 49-97 293-338 (345)
67 1wim_A KIAA0161 protein; ring 98.8 1.2E-09 4.3E-14 71.1 2.5 46 49-94 3-61 (94)
68 2ct0_A Non-SMC element 1 homol 98.8 1E-08 3.4E-13 64.2 5.1 49 49-97 13-64 (74)
69 1vyx_A ORF K3, K3RING; zinc-bi 98.4 2.6E-07 8.7E-12 55.4 4.3 48 49-96 4-58 (60)
70 3k1l_B Fancl; UBC, ring, RWD, 98.3 1E-07 3.5E-12 75.4 1.0 49 49-97 306-373 (381)
71 3vk6_A E3 ubiquitin-protein li 98.3 5.4E-07 1.8E-11 58.9 3.4 46 53-98 3-50 (101)
72 3nw0_A Non-structural maintena 97.5 0.00013 4.3E-09 55.1 5.0 48 50-97 179-229 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 97.1 0.00024 8.2E-09 46.2 2.1 33 50-82 2-38 (101)
74 3m62_A Ubiquitin conjugation f 96.4 0.0031 1.1E-07 55.8 4.9 64 47-113 887-951 (968)
75 2ko5_A Ring finger protein Z; 95.4 0.022 7.4E-07 36.6 4.3 49 48-98 25-74 (99)
76 2cs3_A Protein C14ORF4, MY039 91.7 0.23 8E-06 30.9 3.9 36 48-83 12-51 (93)
77 2lri_C Autoimmune regulator; Z 89.0 0.43 1.5E-05 28.4 3.4 47 49-95 10-60 (66)
78 3i2d_A E3 SUMO-protein ligase 88.8 0.62 2.1E-05 37.1 5.1 62 49-113 247-313 (371)
79 4fo9_A E3 SUMO-protein ligase 88.3 0.73 2.5E-05 36.5 5.2 63 48-113 212-279 (360)
80 1wil_A KIAA1045 protein; ring 86.7 1.1 3.7E-05 28.1 4.2 46 48-93 12-75 (89)
81 3u5n_A E3 ubiquitin-protein li 83.9 0.46 1.6E-05 34.5 1.9 47 49-95 5-55 (207)
82 1weo_A Cellulose synthase, cat 83.2 1.9 6.5E-05 27.3 4.2 47 50-96 15-69 (93)
83 2l5u_A Chromodomain-helicase-D 82.2 1.1 3.9E-05 26.0 2.8 46 48-93 8-57 (61)
84 2k16_A Transcription initiatio 78.0 0.95 3.2E-05 27.3 1.5 48 49-96 16-70 (75)
85 2l43_A N-teminal domain from h 77.1 1.1 3.9E-05 28.1 1.7 48 48-95 22-76 (88)
86 1joc_A EEA1, early endosomal a 76.9 1 3.5E-05 30.2 1.6 30 51-80 69-102 (125)
87 1zbd_B Rabphilin-3A; G protein 76.5 1.4 4.9E-05 29.9 2.3 30 49-78 53-87 (134)
88 2zet_C Melanophilin; complex, 72.6 1.4 4.7E-05 30.7 1.4 44 50-94 67-117 (153)
89 3o36_A Transcription intermedi 72.5 2.4 8.3E-05 29.9 2.7 46 50-95 3-52 (184)
90 1vfy_A Phosphatidylinositol-3- 72.3 1.9 6.7E-05 25.9 1.9 29 51-79 11-43 (73)
91 2lbm_A Transcriptional regulat 71.5 4.7 0.00016 27.6 3.9 45 49-93 61-116 (142)
92 1z60_A TFIIH basal transcripti 71.0 3.3 0.00011 24.0 2.6 40 52-91 16-58 (59)
93 2ro1_A Transcription intermedi 69.3 2.1 7.1E-05 30.7 1.7 45 51-95 2-50 (189)
94 3ql9_A Transcriptional regulat 69.2 5.8 0.0002 26.7 3.9 45 49-93 55-110 (129)
95 3mjh_B Early endosome antigen 69.2 0.77 2.6E-05 23.8 -0.4 15 50-64 4-18 (34)
96 2yw8_A RUN and FYVE domain-con 68.3 2.3 7.8E-05 26.1 1.6 31 50-80 18-52 (82)
97 1f62_A Transcription factor WS 68.0 2.5 8.4E-05 23.3 1.6 41 53-93 2-49 (51)
98 2ku3_A Bromodomain-containing 68.0 2.3 7.9E-05 25.5 1.5 46 49-94 14-66 (71)
99 2yql_A PHD finger protein 21A; 67.6 0.72 2.5E-05 26.3 -0.8 45 49-93 7-55 (56)
100 2jmo_A Parkin; IBR, E3 ligase, 67.4 0.39 1.3E-05 29.6 -2.1 20 68-89 55-74 (80)
101 1z2q_A LM5-1; membrane protein 67.2 2.6 8.8E-05 26.0 1.7 31 50-80 20-54 (84)
102 1mm2_A MI2-beta; PHD, zinc fin 67.1 1.3 4.4E-05 25.7 0.2 46 49-94 7-56 (61)
103 1dvp_A HRS, hepatocyte growth 65.4 2.3 8E-05 30.9 1.4 33 48-80 158-194 (220)
104 2o35_A Hypothetical protein DU 65.3 2.6 8.8E-05 27.2 1.4 12 72-83 42-53 (105)
105 3fyb_A Protein of unknown func 65.3 2.6 8.8E-05 27.1 1.4 12 72-83 41-52 (104)
106 1x4u_A Zinc finger, FYVE domai 65.1 2.7 9.2E-05 25.9 1.5 30 50-79 13-46 (84)
107 1we9_A PHD finger family prote 64.9 1.1 3.9E-05 26.0 -0.3 46 49-94 4-58 (64)
108 3zyq_A Hepatocyte growth facto 63.2 3 0.0001 30.6 1.7 33 48-80 161-197 (226)
109 1wd2_A Ariadne-1 protein homol 62.8 0.67 2.3E-05 27.0 -1.6 34 51-84 6-47 (60)
110 1m3v_A FLIN4, fusion of the LI 62.3 5 0.00017 26.2 2.5 47 50-96 31-80 (122)
111 3t7l_A Zinc finger FYVE domain 61.8 3 0.0001 26.1 1.2 31 50-80 19-53 (90)
112 1xwh_A Autoimmune regulator; P 61.6 1.2 4.1E-05 26.2 -0.6 46 49-94 6-55 (66)
113 1y02_A CARP2, FYVE-ring finger 61.2 0.73 2.5E-05 30.8 -1.8 46 49-94 17-66 (120)
114 2gmg_A Hypothetical protein PF 61.1 2.1 7.2E-05 27.9 0.4 28 63-95 67-94 (105)
115 1wfk_A Zinc finger, FYVE domai 60.6 3.6 0.00012 25.7 1.4 32 49-80 7-42 (88)
116 2e6r_A Jumonji/ARID domain-con 60.5 1.1 3.8E-05 28.3 -1.0 49 46-94 11-66 (92)
117 1fp0_A KAP-1 corepressor; PHD 59.9 3 0.0001 26.2 1.0 47 48-94 22-72 (88)
118 2yt5_A Metal-response element- 59.7 2 7E-05 25.0 0.1 47 49-95 4-62 (66)
119 3v43_A Histone acetyltransfera 59.4 14 0.00049 23.7 4.3 44 49-92 3-62 (112)
120 1wev_A Riken cDNA 1110020M19; 57.5 1.9 6.4E-05 27.0 -0.3 47 50-96 15-74 (88)
121 1x62_A C-terminal LIM domain p 56.4 7.4 0.00025 23.1 2.3 40 49-96 13-52 (79)
122 2pv0_B DNA (cytosine-5)-methyl 56.0 12 0.00041 29.8 4.1 27 68-94 112-148 (386)
123 4g9i_A Hydrogenase maturation 55.6 6.1 0.00021 34.4 2.5 48 49-96 104-189 (772)
124 3ttc_A HYPF, transcriptional r 55.2 6 0.00021 33.8 2.3 47 49-95 15-99 (657)
125 2puy_A PHD finger protein 21A; 54.5 1.8 6.2E-05 24.9 -0.7 46 50-95 4-53 (60)
126 1wem_A Death associated transc 53.0 7.7 0.00026 23.2 2.0 44 51-95 16-71 (76)
127 1x64_A Alpha-actinin-2 associa 52.4 13 0.00046 22.5 3.1 40 49-96 23-62 (89)
128 2fiy_A Protein FDHE homolog; F 51.8 1.4 4.7E-05 34.2 -2.0 46 49-94 180-231 (309)
129 3a1b_A DNA (cytosine-5)-methyl 51.6 15 0.00052 25.6 3.6 26 68-93 98-133 (159)
130 2cor_A Pinch protein; LIM doma 51.4 12 0.00043 22.2 2.8 39 50-96 14-52 (79)
131 3vth_A Hydrogenase maturation 51.0 7.3 0.00025 33.9 2.2 48 49-96 109-194 (761)
132 2lv9_A Histone-lysine N-methyl 50.7 4 0.00014 26.0 0.4 43 50-93 27-75 (98)
133 2d8v_A Zinc finger FYVE domain 48.8 8 0.00027 22.9 1.5 33 49-82 6-39 (67)
134 1wen_A Inhibitor of growth fam 48.0 8 0.00028 23.0 1.5 45 49-95 14-66 (71)
135 1nyp_A Pinch protein; LIM doma 48.0 8 0.00027 21.9 1.5 38 51-96 5-42 (66)
136 1wig_A KIAA1808 protein; LIM d 47.7 9.2 0.00031 22.4 1.7 37 52-96 6-42 (73)
137 2ysm_A Myeloid/lymphoid or mix 47.3 4.1 0.00014 26.3 0.1 44 49-92 5-55 (111)
138 2dar_A PDZ and LIM domain prot 46.6 6.2 0.00021 24.1 0.8 39 50-96 24-62 (90)
139 2xjy_A Rhombotin-2; oncoprotei 46.2 11 0.00037 24.6 2.1 48 49-96 27-77 (131)
140 1wyh_A SLIM 2, skeletal muscle 45.5 16 0.00055 20.9 2.6 38 51-96 5-44 (72)
141 1rut_X Flinc4, fusion protein 45.3 6.9 0.00024 27.5 1.0 47 50-96 31-80 (188)
142 1x6a_A LIMK-2, LIM domain kina 44.7 10 0.00035 22.5 1.6 37 52-96 16-52 (81)
143 2d8z_A Four and A half LIM dom 44.4 10 0.00035 21.7 1.6 37 52-96 6-42 (70)
144 3mpx_A FYVE, rhogef and PH dom 44.2 4.7 0.00016 31.9 0.0 31 51-81 375-409 (434)
145 2xqn_T Testin, TESS; metal-bin 43.2 18 0.00063 23.3 2.8 45 50-96 29-74 (126)
146 2d8x_A Protein pinch; LIM doma 43.1 7 0.00024 22.5 0.6 38 51-96 5-42 (70)
147 3lqh_A Histone-lysine N-methyl 42.7 4.6 0.00016 28.8 -0.3 44 52-95 3-64 (183)
148 1weu_A Inhibitor of growth fam 41.0 8.7 0.0003 24.2 0.9 45 49-95 34-86 (91)
149 1wew_A DNA-binding family prot 40.6 11 0.00037 22.7 1.3 45 49-94 14-72 (78)
150 1x4l_A Skeletal muscle LIM-pro 39.5 19 0.00065 20.7 2.2 38 51-96 5-46 (72)
151 2ct7_A Ring finger protein 31; 39.1 1.6 5.4E-05 27.1 -2.9 28 54-81 28-61 (86)
152 3c6w_A P28ING5, inhibitor of g 38.4 4.4 0.00015 23.3 -0.8 43 49-93 7-57 (59)
153 2ri7_A Nucleosome-remodeling f 38.0 8.3 0.00028 26.7 0.5 46 49-95 6-60 (174)
154 1x63_A Skeletal muscle LIM-pro 37.5 16 0.00056 21.5 1.8 38 51-96 15-54 (82)
155 1x68_A FHL5 protein; four-and- 36.8 12 0.0004 22.0 1.0 37 52-96 6-46 (76)
156 2jrp_A Putative cytoplasmic pr 36.7 1.2 4.1E-05 27.7 -3.6 11 52-62 3-13 (81)
157 2dlo_A Thyroid receptor-intera 36.5 10 0.00035 22.5 0.7 38 51-96 15-52 (81)
158 1v6g_A Actin binding LIM prote 36.0 11 0.00036 22.4 0.7 37 52-96 16-52 (81)
159 2vpb_A Hpygo1, pygopus homolog 35.8 21 0.00071 20.8 1.9 30 49-78 6-40 (65)
160 3o70_A PHD finger protein 13; 35.7 6.7 0.00023 23.2 -0.3 44 49-93 17-66 (68)
161 2cuq_A Four and A half LIM dom 35.2 16 0.00055 21.4 1.4 37 52-96 16-52 (80)
162 2cur_A Skeletal muscle LIM-pro 34.7 10 0.00036 21.7 0.5 36 52-95 6-41 (69)
163 2cu8_A Cysteine-rich protein 2 34.2 12 0.00041 21.9 0.7 38 51-96 9-47 (76)
164 2rgt_A Fusion of LIM/homeobox 33.8 37 0.0013 23.1 3.3 45 49-95 31-75 (169)
165 3c5k_A HD6, histone deacetylas 33.3 29 0.00099 22.4 2.5 25 51-75 24-48 (109)
166 3ask_A E3 ubiquitin-protein li 32.1 8.9 0.00031 28.3 -0.2 42 52-93 175-224 (226)
167 3asl_A E3 ubiquitin-protein li 31.4 8.3 0.00028 22.9 -0.4 41 53-93 20-68 (70)
168 1wff_A Riken cDNA 2810002D23 p 30.3 34 0.0012 21.2 2.3 27 50-76 24-52 (85)
169 2ehe_A Four and A half LIM dom 30.2 26 0.00088 20.6 1.8 37 52-96 16-54 (82)
170 1x4k_A Skeletal muscle LIM-pro 30.2 16 0.00053 21.0 0.7 37 52-96 6-44 (72)
171 3shb_A E3 ubiquitin-protein li 30.2 6.7 0.00023 23.9 -1.0 41 53-93 28-76 (77)
172 2vnf_A ING 4, P29ING4, inhibit 29.9 7 0.00024 22.4 -0.9 43 49-93 8-58 (60)
173 1x3h_A Leupaxin; paxillin fami 29.7 16 0.00054 21.5 0.7 37 52-96 16-52 (80)
174 1wep_A PHF8; structural genomi 29.4 39 0.0013 20.1 2.5 45 50-95 11-64 (79)
175 1iml_A CRIP, cysteine rich int 29.1 16 0.00054 21.3 0.6 42 50-93 26-69 (76)
176 2e6s_A E3 ubiquitin-protein li 28.8 7.8 0.00027 23.5 -0.8 41 53-93 28-76 (77)
177 2kgg_A Histone demethylase jar 28.5 26 0.00088 19.2 1.4 40 53-92 4-52 (52)
178 2jtn_A LIM domain-binding prot 28.2 36 0.0012 23.5 2.5 43 52-96 88-130 (182)
179 2jmi_A Protein YNG1, ING1 homo 27.8 10 0.00035 23.8 -0.5 43 49-93 24-75 (90)
180 1x61_A Thyroid receptor intera 27.6 81 0.0028 17.7 3.7 29 52-80 34-63 (72)
181 2l3k_A Rhombotin-2, linker, LI 27.6 26 0.0009 22.6 1.6 33 50-82 35-69 (123)
182 2g6q_A Inhibitor of growth pro 27.0 8.7 0.0003 22.2 -0.8 43 49-93 9-59 (62)
183 1wee_A PHD finger family prote 27.0 10 0.00035 22.4 -0.5 45 49-94 14-66 (72)
184 2cup_A Skeletal muscle LIM-pro 26.2 38 0.0013 20.7 2.1 45 50-96 32-77 (101)
185 2egq_A FHL1 protein; LIM domai 25.5 20 0.00069 20.8 0.6 37 52-96 16-57 (77)
186 2l4z_A DNA endonuclease RBBP8, 25.4 37 0.0013 22.1 2.0 38 51-96 61-99 (123)
187 2ffw_A Midline-1; B-BOX, ring 25.3 85 0.0029 18.6 3.5 31 50-80 29-62 (78)
188 2dj7_A Actin-binding LIM prote 25.2 38 0.0013 20.0 1.9 40 49-96 13-53 (80)
189 2kwj_A Zinc finger protein DPF 25.1 32 0.0011 22.1 1.6 40 53-92 3-59 (114)
190 1g47_A Pinch protein; LIM doma 24.8 34 0.0012 19.7 1.6 39 50-96 10-50 (77)
191 1j2o_A FLIN2, fusion of rhombo 24.7 34 0.0012 21.7 1.7 35 49-83 28-65 (114)
192 2jne_A Hypothetical protein YF 24.4 3.4 0.00012 26.5 -3.1 40 52-96 33-72 (101)
193 2iyb_E Testin, TESS, TES; LIM 24.4 20 0.00067 20.3 0.4 36 53-96 4-43 (65)
194 4gut_A Lysine-specific histone 24.0 35 0.0012 29.5 2.0 31 51-81 13-53 (776)
195 4gne_A Histone-lysine N-methyl 22.5 21 0.00071 23.1 0.3 44 49-95 13-63 (107)
196 2jvx_A NF-kappa-B essential mo 22.4 14 0.00047 18.0 -0.5 13 52-64 4-16 (28)
197 2rsd_A E3 SUMO-protein ligase 22.1 8.8 0.0003 22.5 -1.5 44 49-93 8-64 (68)
198 2co8_A NEDD9 interacting prote 22.0 73 0.0025 18.7 2.8 40 49-96 13-53 (82)
199 2d8y_A Eplin protein; LIM doma 21.4 83 0.0028 18.8 3.0 39 50-96 14-53 (91)
200 1x4w_A Hypothetical protein FL 20.4 57 0.0019 19.2 1.9 28 49-76 13-44 (67)
201 1erd_A Pheromone ER-2; NMR {Eu 20.0 13 0.00044 19.0 -0.9 15 66-80 9-23 (40)
No 1
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.61 E-value=6.1e-16 Score=97.94 Aligned_cols=66 Identities=17% Similarity=0.305 Sum_probs=54.6
Q ss_pred CCCCcccccccccccccceecCCCCcccHHHHHHHhhC-CCCCccccccccccCCCCccccCchhhhhhh
Q 031971 47 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRRVNSGDLWIYTSEDDIVDL 115 (150)
Q Consensus 47 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~~~~~i~~~ 115 (150)
.+.+.+.|+||++.+.+|++++|||+||..||..|+.. ...||.||..+.. ..+..+..+.++++.
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~---~~l~~n~~l~~~i~~ 70 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH---AGLTPNYVLKSLIAL 70 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS---CCCEECTTTHHHHHH
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh---hhCccCHHHHHHHHH
Confidence 35678999999999999999999999999999999986 7889999998853 345566666655544
No 2
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.59 E-value=1.8e-16 Score=111.02 Aligned_cols=49 Identities=37% Similarity=0.879 Sum_probs=45.4
Q ss_pred CCcccccccccccccceecCCCCcccHHHHHHHhhCCCCCccccccccc
Q 031971 49 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 97 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 97 (150)
.+++.|+||++.+.+|++++|||+||..||..|+.....||.||.++..
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 4567899999999999999999999999999999999999999999854
No 3
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.59 E-value=1.4e-15 Score=99.11 Aligned_cols=69 Identities=25% Similarity=0.416 Sum_probs=54.1
Q ss_pred ccCCCCcccccccccccccceecC-CCCcccHHHHHHHhhC--CCCCccccccccccCCCCccccCchhhhhhh
Q 031971 45 EIDIEREEECGICLEICCKIVLPD-CNHSMCMRCYRNWRAR--SQSCPFCRDSLRRVNSGDLWIYTSEDDIVDL 115 (150)
Q Consensus 45 ~~~~~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~~~~~~~~~~i~~~ 115 (150)
...+.+.+.|+||++.+.+|++++ |||+||..||..|+.. ...||.||..+. ....+..+..+.++++.
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~--~~~~~~~n~~l~~~i~~ 78 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV--SPDALIANKFLRQAVNN 78 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC--CTTSCEECHHHHHHHHH
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC--CccccCcCHHHHHHHHH
Confidence 344678899999999999999999 9999999999998863 468999999873 22345566656555544
No 4
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.58 E-value=1e-15 Score=102.81 Aligned_cols=92 Identities=18% Similarity=0.360 Sum_probs=64.5
Q ss_pred CCCCcccccccccccccceec-CCCCcccHHHHHHHhhCCCCCccccccccccC-CCCccccCchhhhhhhhh--hcHHH
Q 031971 47 DIEREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRRVN-SGDLWIYTSEDDIVDLAS--ISREN 122 (150)
Q Consensus 47 ~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~-~~~~~~~~~~~~i~~~~~--~~~~~ 122 (150)
.+.+.+.|+||++.+.+|+.+ +|||+||..|+..|+.....||.||..+.... ...+..+..+.++++... .....
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~e 90 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPGLFKNE 90 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHSTTHHHHH
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhhhHHHHH
Confidence 346789999999999999987 99999999999999998899999999986421 113445555555554422 22344
Q ss_pred HHHHHHHHhcCCCCCC
Q 031971 123 LKRLFMYIDKLPFITP 138 (150)
Q Consensus 123 ~~~l~~~~~~~p~~~~ 138 (150)
..+-..++.+.+...|
T Consensus 91 ~~~~~~~~~~~~~~~p 106 (108)
T 2ckl_A 91 MKRRRDFYAAHPSADA 106 (108)
T ss_dssp HHHHHHHHHHSCC---
T ss_pred HHhHHHHHHhCccccC
Confidence 4455566666665544
No 5
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.57 E-value=6.2e-16 Score=97.93 Aligned_cols=63 Identities=29% Similarity=0.537 Sum_probs=51.0
Q ss_pred cCCCCcccccccccccccceecCCCCcccHHHHHHHhhC-------CCCCccccccccccCCCCccccCchhh
Q 031971 46 IDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-------SQSCPFCRDSLRRVNSGDLWIYTSEDD 111 (150)
Q Consensus 46 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-------~~~CP~Cr~~~~~~~~~~~~~~~~~~~ 111 (150)
..+.+.+.|+||++.+.+|+.++|||.||..|+..|+.. ...||.||..+.. ..+..+..+.+
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~---~~l~~n~~l~~ 76 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF---EHLQANQHLAN 76 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS---SGGGTCSSSCC
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH---hhCCcCHHHHH
Confidence 345678999999999999999999999999999999875 6789999999853 23444444433
No 6
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=3.3e-15 Score=93.33 Aligned_cols=54 Identities=20% Similarity=0.429 Sum_probs=47.9
Q ss_pred ccCCCCcccccccccccccceec-CCCCcccHHHHHHHhhCCCCCcccccccccc
Q 031971 45 EIDIEREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 98 (150)
Q Consensus 45 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 98 (150)
...+.+.+.|+||++.+.+|+.+ +|||.||..||..|+.....||.||..+...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 34457789999999999999987 9999999999999999889999999998643
No 7
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.55 E-value=3.4e-15 Score=96.46 Aligned_cols=67 Identities=15% Similarity=-0.008 Sum_probs=55.9
Q ss_pred cCCCCcccccccccccccceecCCCCcccHHHHHHHhhCCCCCccccccccccCCCCccccCchhhhhhh
Q 031971 46 IDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDL 115 (150)
Q Consensus 46 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~i~~~ 115 (150)
..+.+.+.|+||++.+.+||+++|||+||..||..|+.....||.|+.++... .+..|..+.++++.
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~---~l~pn~~L~~~i~~ 75 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES---MLEPVPELKEQIQA 75 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG---GCEECHHHHHHHHH
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH---hcchHHHHHHHHHH
Confidence 34567899999999999999999999999999999998888999999988642 46666666665554
No 8
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.55 E-value=1.2e-15 Score=101.34 Aligned_cols=50 Identities=34% Similarity=0.810 Sum_probs=45.3
Q ss_pred CCCccccccccccccccee-cCCCCcccHHHHHHHhhCC-CCCccccccccc
Q 031971 48 IEREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRARS-QSCPFCRDSLRR 97 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~ 97 (150)
+.+.+.|+||++.+.+|+. ++|||.||..||..|+... ..||.||..+..
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 3567899999999999999 9999999999999999876 799999999854
No 9
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=3.6e-15 Score=95.31 Aligned_cols=64 Identities=34% Similarity=0.578 Sum_probs=51.7
Q ss_pred cCCCCcccccccccccccceecCCCCcccHHHHHHHhhC------CCCCccccccccccCCCCccccCchhhh
Q 031971 46 IDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR------SQSCPFCRDSLRRVNSGDLWIYTSEDDI 112 (150)
Q Consensus 46 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~~~~~~~~~~~~~~~i 112 (150)
..+.+.+.|+||++.+.+|+.++|||.||..|+..|+.. ...||.||..+.. ..+..+..+.++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~---~~~~~n~~l~~~ 83 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF---GNLKPNLHVANI 83 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT---TCCEECSCCCSS
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH---HhCCcCHHHHHh
Confidence 345678999999999999999999999999999999876 6789999999853 244455444443
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.54 E-value=3.3e-15 Score=92.72 Aligned_cols=51 Identities=27% Similarity=0.732 Sum_probs=46.0
Q ss_pred CCCcccccccccccccc-------eecCCCCcccHHHHHHHhhCCCCCcccccccccc
Q 031971 48 IEREEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 98 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 98 (150)
..+...|+||++.+.+| +.++|||.||..|+.+|+.....||.||..+...
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 35678999999999987 8899999999999999999889999999998644
No 11
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=6e-15 Score=94.08 Aligned_cols=50 Identities=22% Similarity=0.460 Sum_probs=46.0
Q ss_pred CCCCcccccccccccccceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 47 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 47 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
.....+.|+||++.+.+|++++|||.||..|+..|+.....||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34567899999999999999999999999999999998899999999885
No 12
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.54 E-value=3.5e-15 Score=102.48 Aligned_cols=66 Identities=24% Similarity=0.507 Sum_probs=52.3
Q ss_pred CCCcccccccccccccceecCCCCcccHHHHHHHhhC-CCCCccccccccccCCCCccccCchhhhhhh
Q 031971 48 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRRVNSGDLWIYTSEDDIVDL 115 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~~~~~i~~~ 115 (150)
+.+.+.|+||++.+.+|++++|||+||..||..|+.. ...||.||..+.. ...+..+..+.++++.
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~--~~~~~~n~~l~~~i~~ 115 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR--SYAMQVNQPLQTVLNQ 115 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT--TCCCCCCHHHHHHHHH
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC--CCCCCCCHHHHHHHHH
Confidence 3567899999999999999999999999999999874 4599999999863 1345555555555543
No 13
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=9.2e-15 Score=89.71 Aligned_cols=52 Identities=23% Similarity=0.637 Sum_probs=46.1
Q ss_pred cCCCCcccccccccccccceecCCCCcccHHHHHHHhh-CCCCCccccccccc
Q 031971 46 IDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRR 97 (150)
Q Consensus 46 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 97 (150)
..+.+.+.|+||++.+.+|+.++|||.||..|+..|+. ....||.||..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 34567899999999999999999999999999999994 56789999998853
No 14
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.53 E-value=6.6e-15 Score=92.48 Aligned_cols=52 Identities=31% Similarity=0.577 Sum_probs=45.7
Q ss_pred ccCCCCcccccccccccccceecC-CCCcccHHHHHHHhhCC--CCCcccccccc
Q 031971 45 EIDIEREEECGICLEICCKIVLPD-CNHSMCMRCYRNWRARS--QSCPFCRDSLR 96 (150)
Q Consensus 45 ~~~~~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~ 96 (150)
...+.+.+.|+||++.+.+|+.++ |||.||..||..|+... ..||.||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 444577899999999999999999 99999999999999754 68999999764
No 15
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=9.2e-15 Score=94.21 Aligned_cols=55 Identities=31% Similarity=0.649 Sum_probs=47.6
Q ss_pred cccCCCCccccccccccccc----ceecCCCCcccHHHHHHHhhCC---CCCcccccccccc
Q 031971 44 SEIDIEREEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARS---QSCPFCRDSLRRV 98 (150)
Q Consensus 44 ~~~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~---~~CP~Cr~~~~~~ 98 (150)
....+.+.+.|+||++.+.+ |+.++|||.||..|+..|+... ..||.||..+...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 8 NLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 34456778999999999998 9999999999999999998864 7899999988643
No 16
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.53 E-value=8.6e-15 Score=97.35 Aligned_cols=67 Identities=15% Similarity=0.009 Sum_probs=55.5
Q ss_pred cCCCCcccccccccccccceecCCCCcccHHHHHHHhhCCCCCccccccccccCCCCccccCchhhhhhh
Q 031971 46 IDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDL 115 (150)
Q Consensus 46 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~i~~~ 115 (150)
..+.+.+.|+||++.+.+||+++|||+||..||..|+.....||.|+.++.. ..+..|..+.++++.
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~---~~L~pn~~Lk~~I~~ 90 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE---SMLEPVPELKEQIQA 90 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT---TSSEECHHHHHHHHH
T ss_pred ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh---hhceECHHHHHHHHH
Confidence 3456789999999999999999999999999999999888899999999863 356666666555443
No 17
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.1e-14 Score=90.78 Aligned_cols=52 Identities=35% Similarity=0.800 Sum_probs=46.1
Q ss_pred cCCCCcccccccccccccceecCCCCcccHHHHHHHhh---CCCCCccccccccc
Q 031971 46 IDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA---RSQSCPFCRDSLRR 97 (150)
Q Consensus 46 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~~~~ 97 (150)
..+.+.+.|+||++.+.+|+.++|||.||..|+..|+. ....||.||..+..
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 44567899999999999999999999999999999986 45689999998853
No 18
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=4.8e-15 Score=94.74 Aligned_cols=63 Identities=29% Similarity=0.654 Sum_probs=51.3
Q ss_pred cCCCCcccccccccccccceecCCCCcccHHHHHHHhhC------CCCCccccccccccCCCCccccCchhh
Q 031971 46 IDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR------SQSCPFCRDSLRRVNSGDLWIYTSEDD 111 (150)
Q Consensus 46 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~~~~~~~~~~~~~~~ 111 (150)
..+.+.+.|+||++.+.+|+.++|||.||..|+..|+.. ...||.||..+.. .++..+..+.+
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~---~~~~~n~~l~~ 82 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP---ENIRPNRHVAN 82 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS---SSCCCSCCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH---HhcCccHHHHH
Confidence 345678999999999999999999999999999999875 7899999999864 33444444443
No 19
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=9.4e-15 Score=90.97 Aligned_cols=50 Identities=28% Similarity=0.692 Sum_probs=45.9
Q ss_pred CCCcccccccccccccceecCCCCcccHHHHHHHhhCCCCCccccccccc
Q 031971 48 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 97 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 97 (150)
..+...|+||++.+.+|+.++|||.||..|+..|+.....||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 45678999999999999999999999999999999988999999998853
No 20
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.51 E-value=2.1e-14 Score=95.08 Aligned_cols=67 Identities=16% Similarity=0.104 Sum_probs=55.2
Q ss_pred cCCCCcccccccccccccceecCCC-CcccHHHHHHHhhCCCCCccccccccccCCCCccccCchhhhhhh
Q 031971 46 IDIEREEECGICLEICCKIVLPDCN-HSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDL 115 (150)
Q Consensus 46 ~~~~~~~~C~IC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~i~~~ 115 (150)
..+.+.+.|+||++++.+||+++|| |+||..||..|+.....||+|+.++.. ..+..|..+.++++.
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~---~~L~pn~~Lk~~I~~ 84 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM---DQIRPNTELKEKIQR 84 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT---TTSEECHHHHHHHHH
T ss_pred hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh---hhceEcHHHHHHHHH
Confidence 3456789999999999999999999 999999999999888899999999863 355566656555443
No 21
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.51 E-value=6.8e-15 Score=97.23 Aligned_cols=64 Identities=27% Similarity=0.577 Sum_probs=52.9
Q ss_pred CCcccccccccccccceec-CCCCcccHHHHHHHhhCCCCCccccccccccCCCCccccCchhhhhhh
Q 031971 49 EREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDL 115 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~i~~~ 115 (150)
.+.+.|+||++.+.+|+.+ +|||+||..|+..|+.....||.||..+.. ..+..+..+.++++.
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~---~~l~~n~~l~~~i~~ 84 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE---PDLKNNRILDELVKS 84 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG---GGCEECHHHHHHHHH
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh---hhCCcCHHHHHHHHH
Confidence 4578999999999999887 999999999999999988999999998864 345555555555554
No 22
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.5e-14 Score=89.06 Aligned_cols=51 Identities=27% Similarity=0.755 Sum_probs=45.7
Q ss_pred cCCCCcccccccccccccc-------eecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 46 IDIEREEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 46 ~~~~~~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
....+...|+||++.+.++ +.++|||.||..|+..|+.....||+||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 3346788999999999987 88999999999999999998899999999875
No 23
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3.7e-14 Score=86.13 Aligned_cols=46 Identities=35% Similarity=0.803 Sum_probs=41.3
Q ss_pred cCCCCcccccccccccccceecCCCCcccHHHHHHHhh---CCCCCccc
Q 031971 46 IDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA---RSQSCPFC 91 (150)
Q Consensus 46 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~---~~~~CP~C 91 (150)
..+.+.+.|+||++.+.+|+.++|||.||..||..|+. ....||.|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 44577899999999999999999999999999999997 45689988
No 24
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.47 E-value=1.1e-14 Score=88.37 Aligned_cols=48 Identities=29% Similarity=0.796 Sum_probs=43.7
Q ss_pred Ccccccccccccccc-------eecCCCCcccHHHHHHHhhCCCCCccccccccc
Q 031971 50 REEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 97 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 97 (150)
+...|+||++.+.++ +.++|||.||..|+.+|+.....||.||..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 467899999999887 789999999999999999988999999998864
No 25
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.47 E-value=8.1e-14 Score=93.66 Aligned_cols=63 Identities=27% Similarity=0.597 Sum_probs=49.8
Q ss_pred CcccccccccccccceecCCCCcccHHHHHHHhhCC---CCCccccccccccCCCCccccCchhhhhhh
Q 031971 50 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARS---QSCPFCRDSLRRVNSGDLWIYTSEDDIVDL 115 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~CP~Cr~~~~~~~~~~~~~~~~~~~i~~~ 115 (150)
+.+.|+||++.+.+|+.++|||.||..|+..|+... ..||.||..+... .+..+..+.++++.
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~---~~~~~~~l~~~~~~ 85 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR---SLQESTRFSQLVEE 85 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT---TCBCCCSSSHHHHH
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh---hcCccHHHHHHHHH
Confidence 467899999999999999999999999999998854 4899999998643 34444444444443
No 26
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.47 E-value=8.8e-15 Score=99.19 Aligned_cols=69 Identities=29% Similarity=0.618 Sum_probs=53.0
Q ss_pred CCCCcccccccccccccceecCCCCcccHHHHHHHhhC-CCCCcccccccccc----CCCCccccCchhhhhhh
Q 031971 47 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRRV----NSGDLWIYTSEDDIVDL 115 (150)
Q Consensus 47 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~----~~~~~~~~~~~~~i~~~ 115 (150)
...+++.|+||++.+.+|++++|||+||..|+..|+.. ...||.||..+... ......++..+.+++..
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~ 84 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQK 84 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHH
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHH
Confidence 34567899999999999999999999999999999875 67899999998531 12334445555555444
No 27
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=6.8e-14 Score=86.39 Aligned_cols=50 Identities=30% Similarity=0.703 Sum_probs=43.6
Q ss_pred CCCcccccccccccc---cceecCCCCcccHHHHHHHhhCCCCCccccccccc
Q 031971 48 IEREEECGICLEICC---KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 97 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 97 (150)
......|+||++.+. .++.++|||.||..|+..|+.....||+||..+..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 456788999999885 35779999999999999999988899999998864
No 28
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.46 E-value=3e-14 Score=101.19 Aligned_cols=66 Identities=26% Similarity=0.486 Sum_probs=52.5
Q ss_pred CCCcccccccccccccceecCCCCcccHHHHHHHhhCC-CCCccccccccccCCCCccccCchhhhhhh
Q 031971 48 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARS-QSCPFCRDSLRRVNSGDLWIYTSEDDIVDL 115 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~~~~~~~~i~~~ 115 (150)
+.+.+.|+||++.+.+|++++|||+||..||..|+... ..||.||..+... ..+..+..+.++++.
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~--~~l~~n~~l~~lv~~ 141 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN--YIMIPNEILQTLLDL 141 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT--CCCCBCHHHHHHHHH
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC--CCCCCCHHHHHHHHH
Confidence 35678999999999999999999999999999998865 4899999998643 145555555555543
No 29
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.46 E-value=3.4e-14 Score=83.89 Aligned_cols=49 Identities=24% Similarity=0.684 Sum_probs=43.0
Q ss_pred CCCccccccccccccc---ceecC-CCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 48 IEREEECGICLEICCK---IVLPD-CNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
+++...|+||++.+.+ ++.++ |||.||..|+.+|+.....||+||..+.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3567889999999987 67776 9999999999999999999999998763
No 30
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=4.9e-14 Score=87.27 Aligned_cols=50 Identities=34% Similarity=0.937 Sum_probs=45.6
Q ss_pred CCCCcccccccccccccceecCCCCcccHHHHHHHhhCCCCCccccccccc
Q 031971 47 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 97 (150)
Q Consensus 47 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 97 (150)
...+...|+||++.+.+ +.++|||.||..|+..|+.....||.||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 34667899999999999 899999999999999999999999999998864
No 31
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.45 E-value=6.8e-14 Score=91.25 Aligned_cols=50 Identities=28% Similarity=0.606 Sum_probs=44.5
Q ss_pred CCCCccccccccccccc---ceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 47 DIEREEECGICLEICCK---IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 47 ~~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
...++..|+||++.+.. ++.++|||.||..||..|+.....||+||..+.
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 34567899999999887 678899999999999999999999999999874
No 32
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.1e-13 Score=82.47 Aligned_cols=46 Identities=33% Similarity=0.919 Sum_probs=40.4
Q ss_pred cCCCCcccccccccccccceecCCCCcccHHHHHHHhh---CCCCCccc
Q 031971 46 IDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA---RSQSCPFC 91 (150)
Q Consensus 46 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~---~~~~CP~C 91 (150)
..+.+...|+||++.+.+|+.++|||.||..|+..|+. ....||+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34567889999999999999999999999999999954 56789987
No 33
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.44 E-value=9.5e-14 Score=87.71 Aligned_cols=52 Identities=31% Similarity=0.587 Sum_probs=45.1
Q ss_pred CCCCcccccccccccccc---eecCCCCcccHHHHHHHhhCCCCCcccccccccc
Q 031971 47 DIEREEECGICLEICCKI---VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 98 (150)
Q Consensus 47 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 98 (150)
.......|+||++.+.++ ..++|||.||..||..|+.....||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 346678999999999865 4579999999999999999889999999998643
No 34
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.43 E-value=6.1e-14 Score=95.55 Aligned_cols=53 Identities=26% Similarity=0.524 Sum_probs=46.7
Q ss_pred ccCCCCcccccccccccccceecCCCCcccHHHHHHHhhCCC-CCccccccccc
Q 031971 45 EIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQ-SCPFCRDSLRR 97 (150)
Q Consensus 45 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~ 97 (150)
...+.+.+.|+||++.+.+|+.++|||.||..||..|+.... .||.||..+..
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred ccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 345678899999999999999999999999999999988654 99999998853
No 35
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.42 E-value=4.2e-14 Score=101.57 Aligned_cols=66 Identities=24% Similarity=0.529 Sum_probs=52.7
Q ss_pred CCCcccccccccccccceec-CCCCcccHHHHHHHhhC-CCCCccccccccccCCCCccccCchhhhhhh
Q 031971 48 IEREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRAR-SQSCPFCRDSLRRVNSGDLWIYTSEDDIVDL 115 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~~~~~i~~~ 115 (150)
+.+.+.|+||++.+.+|+.+ +|||.||..||..|+.. ...||.||..+.. ...+..+..+.++++.
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~--~~~l~~~~~l~~~i~~ 118 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS--KRSLRPDPNFDALISK 118 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS--GGGEEECHHHHHHHHH
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC--cccCCcCHHHHHHHHH
Confidence 44677999999999999887 99999999999999986 7889999999853 2335555556555544
No 36
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.42 E-value=9.1e-14 Score=84.95 Aligned_cols=48 Identities=23% Similarity=0.594 Sum_probs=41.2
Q ss_pred Cccccccccc-ccccc----eecCCCCcccHHHHHHHhh-CCCCCccccccccc
Q 031971 50 REEECGICLE-ICCKI----VLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRR 97 (150)
Q Consensus 50 ~~~~C~IC~~-~~~~p----~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 97 (150)
++..|+||++ .+.+| +.++|||.||..|+.+|+. +...||.||..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 4678999999 89888 4689999999999999865 45789999999864
No 37
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.41 E-value=8.4e-14 Score=82.14 Aligned_cols=48 Identities=25% Similarity=0.581 Sum_probs=42.4
Q ss_pred CCccccccccccccc----ceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 49 EREEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
.....|+||++.+.+ ++.++|||.||..|+..|+.....||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 356789999999866 678999999999999999998899999998763
No 38
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.41 E-value=7.6e-14 Score=85.88 Aligned_cols=49 Identities=29% Similarity=0.766 Sum_probs=44.0
Q ss_pred CCcccccccccccccc-eecCCCCcccHHHHHHHhhCCCCCccccccccc
Q 031971 49 EREEECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 97 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 97 (150)
.....|+||++.+.++ +.++|||.||..|+.+|+.....||.||..+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3467899999999996 789999999999999999988999999998863
No 39
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.40 E-value=7.3e-14 Score=95.04 Aligned_cols=62 Identities=27% Similarity=0.552 Sum_probs=51.0
Q ss_pred CCcccccccccccccceec-CCCCcccHHHHHHHhhCCCCCccccccccccCCCCccccCchhhhhhh
Q 031971 49 EREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDL 115 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~i~~~ 115 (150)
.+.+.|+||++.+.+|+++ +|||+||..||..|+. ..||.||..+.. ..+..+..+.++++.
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~---~~~~~n~~l~~l~~~ 82 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI---QDLKINRQLDSMIQL 82 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC---SSCCCCHHHHHHHHH
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc---ccccccHHHHHHHHH
Confidence 4578899999999999998 9999999999999987 789999999843 345555556565554
No 40
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.3e-13 Score=85.07 Aligned_cols=51 Identities=24% Similarity=0.602 Sum_probs=44.1
Q ss_pred CCCCccccccccccccccee---cCCCCcccHHHHHHHhhCCCCCccccccccc
Q 031971 47 DIEREEECGICLEICCKIVL---PDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 97 (150)
Q Consensus 47 ~~~~~~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 97 (150)
.......|+||++.+.++.. ++|||.||..|+..|+.....||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 34667899999999987643 4999999999999999988899999998853
No 41
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=1e-13 Score=87.03 Aligned_cols=48 Identities=23% Similarity=0.639 Sum_probs=43.5
Q ss_pred CCcccccccccccccc---eecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 49 EREEECGICLEICCKI---VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
.+...|+||++.+..+ +.++|||.||..|+..|+.....||+||..+.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 4678999999999887 67899999999999999998899999999875
No 42
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.38 E-value=3.8e-13 Score=103.03 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=52.4
Q ss_pred cCCCCcccccccccccccceecCCCCcccHHHHHHHhhC-CCCCccccccccccCCCCccccCchhhhhh
Q 031971 46 IDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRRVNSGDLWIYTSEDDIVD 114 (150)
Q Consensus 46 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~~~~~i~~ 114 (150)
......+.|+||++.+.+||+++|||+||..||..|+.. ...||.|+.+++. ..+..|..+.++++
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~---~~l~~n~~l~~~i~ 269 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ---EQLIPNLAMKEVID 269 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG---GGCEECHHHHHHHH
T ss_pred CCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch---hcCcccHHHHHHHH
Confidence 344578999999999999999999999999999998874 4459999999853 24555555555443
No 43
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.38 E-value=1.5e-13 Score=96.60 Aligned_cols=53 Identities=19% Similarity=0.434 Sum_probs=46.5
Q ss_pred cccCCCCcccccccccccccceecCCCCcccHHHHHHHhhCC-CCCcccccccc
Q 031971 44 SEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARS-QSCPFCRDSLR 96 (150)
Q Consensus 44 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~ 96 (150)
....+.+.+.|+||++.+.+|+.++|||.||..||..|+... ..||.||.++.
T Consensus 24 ~~~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 24 LGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp TGGGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred hhccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 344567899999999999999999999999999999998755 48999999763
No 44
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.38 E-value=1.6e-13 Score=94.36 Aligned_cols=57 Identities=26% Similarity=0.712 Sum_probs=48.4
Q ss_pred CCcccccccccccccc-------eecCCCCcccHHHHHHHhhCCCCCccccccccccCCCCccc
Q 031971 49 EREEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWI 105 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 105 (150)
.+.+.|+||++.+.+| +.++|||.||..||.+|+.....||.||..+.......+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i 68 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 68 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccccccccc
Confidence 4578999999999998 89999999999999999999899999999986544333333
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.37 E-value=1.8e-13 Score=92.82 Aligned_cols=50 Identities=26% Similarity=0.513 Sum_probs=45.1
Q ss_pred CCCcccccccccccccceecCCCCcccHHHHHHHhhC-CCCCccccccccc
Q 031971 48 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRR 97 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 97 (150)
+.+.+.|+||++.+.+|+.++|||.||..|+..|+.. ...||.||..+..
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 3457899999999999999999999999999999985 7799999998864
No 46
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=2.4e-13 Score=89.23 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=49.9
Q ss_pred CCCcccccccccccccceecC-CCCcccHHHHHHHhhC------CCCCcc--cccc-ccccCCCCccccCchhhhhhh
Q 031971 48 IEREEECGICLEICCKIVLPD-CNHSMCMRCYRNWRAR------SQSCPF--CRDS-LRRVNSGDLWIYTSEDDIVDL 115 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~------~~~CP~--Cr~~-~~~~~~~~~~~~~~~~~i~~~ 115 (150)
..+.+.||||++.|.+||+++ |||+||..||..|+.. ...||. |+.. +.. .++..|..+..+++.
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~---~~L~pn~~L~~~I~~ 78 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK---SDLIQDEALRRAIEN 78 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG---GGEEECHHHHHHHHH
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH---hhCcCCHHHHHHHHH
Confidence 456889999999999999995 9999999999998864 358999 8866 532 345555555554443
No 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.35 E-value=1.2e-12 Score=83.14 Aligned_cols=51 Identities=27% Similarity=0.622 Sum_probs=41.4
Q ss_pred CCCCcccccccccccc--cceecC--CCCcccHHHHHHHh-hCCCCCccccccccc
Q 031971 47 DIEREEECGICLEICC--KIVLPD--CNHSMCMRCYRNWR-ARSQSCPFCRDSLRR 97 (150)
Q Consensus 47 ~~~~~~~C~IC~~~~~--~p~~~~--CgH~fC~~Ci~~~~-~~~~~CP~Cr~~~~~ 97 (150)
.+++++.|+||++.+. ++..++ |||.||..|+..++ .....||.||..+..
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3567899999999884 445555 99999999999965 456789999999864
No 48
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.34 E-value=1.4e-12 Score=94.86 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=53.6
Q ss_pred cCCCCcccccccccccccceecCCCCcccHHHHHHHhhC-CCCCccccccccccCCCCccccCchhhhhhh
Q 031971 46 IDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRRVNSGDLWIYTSEDDIVDL 115 (150)
Q Consensus 46 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~~~~~i~~~ 115 (150)
..+.+.+.||||++++.+||+++|||+||..||..|+.. ...||.|+.++... .+..|..+.++++.
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~---~L~pN~~Lk~~Ie~ 168 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD---QLIPNLAMKEVIDA 168 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG---GCEECHHHHHHHHH
T ss_pred cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh---hCcchHHHHHHHHH
Confidence 345688999999999999999999999999999998874 34799999988532 45566556555443
No 49
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.34 E-value=6e-13 Score=89.79 Aligned_cols=48 Identities=29% Similarity=0.626 Sum_probs=40.9
Q ss_pred Ccccccccccccccce------------------ecCCCCcccHHHHHHHh-----hCCCCCccccccccc
Q 031971 50 REEECGICLEICCKIV------------------LPDCNHSMCMRCYRNWR-----ARSQSCPFCRDSLRR 97 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~------------------~~~CgH~fC~~Ci~~~~-----~~~~~CP~Cr~~~~~ 97 (150)
.+..|+||++.+.++. .++|||.||..||..|+ .....||+||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4568999999997654 78999999999999999 456799999998853
No 50
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=9.6e-13 Score=84.01 Aligned_cols=47 Identities=28% Similarity=0.748 Sum_probs=40.4
Q ss_pred Cccccccccccccc--------------cee-cCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 50 REEECGICLEICCK--------------IVL-PDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 50 ~~~~C~IC~~~~~~--------------p~~-~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
++..|+||++.+.+ ++. .+|||.||..||.+|+..+..||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 46779999999976 334 469999999999999999999999999874
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.30 E-value=3.8e-13 Score=80.07 Aligned_cols=45 Identities=22% Similarity=0.490 Sum_probs=40.3
Q ss_pred CCcccccccccccccceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 49 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
.+.+.|+||++.+.+|+.++|||+||..|+..| ...||.||..+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence 467889999999999999999999999998773 578999999875
No 52
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.28 E-value=1.5e-12 Score=93.78 Aligned_cols=53 Identities=26% Similarity=0.533 Sum_probs=46.6
Q ss_pred ccCCCCcccccccccccccceecCCCCcccHHHHHHHhhC-CCCCccccccccc
Q 031971 45 EIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRR 97 (150)
Q Consensus 45 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 97 (150)
...+.+.+.|+||++.+.+|+.++|||+||..|+..|+.. ...||.||..+..
T Consensus 12 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred ccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 3456788999999999999999999999999999999875 4599999998853
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.24 E-value=1.5e-12 Score=81.69 Aligned_cols=45 Identities=29% Similarity=0.741 Sum_probs=40.8
Q ss_pred CCcccccccccccccceecCCCCc-ccHHHHHHHhhCCCCCccccccccc
Q 031971 49 EREEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 97 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 97 (150)
.+...|+||++.+.+++.++|||. ||..|+..| ..||+||..+..
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 346789999999999999999999 999999988 889999998864
No 54
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.23 E-value=5.8e-12 Score=84.42 Aligned_cols=47 Identities=23% Similarity=0.613 Sum_probs=41.5
Q ss_pred Ccccccccccccccc------------------eecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 50 REEECGICLEICCKI------------------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
++..|+||++.+.++ +.++|||.||..||.+|+.....||+||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 467899999998865 34799999999999999999999999999864
No 55
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.21 E-value=4.4e-12 Score=77.46 Aligned_cols=49 Identities=24% Similarity=0.604 Sum_probs=43.8
Q ss_pred CCcccccccccccccceec--CCCCc-ccHHHHHHHhhCCCCCccccccccc
Q 031971 49 EREEECGICLEICCKIVLP--DCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 97 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~--~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 97 (150)
.++..|+||++...+++.+ +|||. ||..|+..|......||+||.++..
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 3567899999999999877 99999 8999999999888899999998853
No 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.21 E-value=2.8e-12 Score=88.05 Aligned_cols=50 Identities=28% Similarity=0.764 Sum_probs=45.1
Q ss_pred CCcccccccccccccc-------eecCCCCcccHHHHHHHhhCCCCCcccccccccc
Q 031971 49 EREEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 98 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 98 (150)
.+...|+||++.+.++ +.++|||.||..|+.+|+.....||.||..+...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 4678899999999886 8899999999999999999999999999988643
No 57
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.20 E-value=7.8e-12 Score=95.52 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=53.7
Q ss_pred cCCCCcccccccccccccceec-CCCCcccHHHHHHHhhC--CCCCcc--ccccccccCCCCccccCchhhhhhh
Q 031971 46 IDIEREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRAR--SQSCPF--CRDSLRRVNSGDLWIYTSEDDIVDL 115 (150)
Q Consensus 46 ~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~--~~~CP~--Cr~~~~~~~~~~~~~~~~~~~i~~~ 115 (150)
......+.||||++.|.+||+. .|||+||..||..|+.. ...||. |+..+.. .++..+..+..+++.
T Consensus 176 ~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~---~dL~pN~~L~~lve~ 247 (267)
T 3htk_C 176 EGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM---RDFVRDPIMELRCKI 247 (267)
T ss_dssp CSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG---GGEEECHHHHHHHHH
T ss_pred cCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch---hhCCcCHHHHHHHHH
Confidence 3346789999999999999985 99999999999998764 357999 9998853 456677666666555
No 58
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.18 E-value=7.6e-12 Score=76.15 Aligned_cols=48 Identities=21% Similarity=0.542 Sum_probs=42.8
Q ss_pred Ccccccccccccccceec--CCCCc-ccHHHHHHHhhCCCCCccccccccc
Q 031971 50 REEECGICLEICCKIVLP--DCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 97 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~~~--~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 97 (150)
....|+||++...+++.+ +|||. ||..|+..|......||+||.++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 456899999999999877 99998 9999999988888899999998853
No 59
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.17 E-value=1.6e-11 Score=98.73 Aligned_cols=48 Identities=33% Similarity=0.862 Sum_probs=44.0
Q ss_pred CcccccccccccccceecCCCCcccHHHHHHHhh-CCCCCccccccccc
Q 031971 50 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRR 97 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 97 (150)
....|+||++.+.+|+.++|||.||..|+..|.. ....||.||..+..
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3478999999999999999999999999999998 78899999999864
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=1.9e-11 Score=76.72 Aligned_cols=44 Identities=30% Similarity=0.745 Sum_probs=38.9
Q ss_pred CcccccccccccccceecCCCCc-ccHHHHHHHhhCCCCCccccccccc
Q 031971 50 REEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 97 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 97 (150)
+...|+||++.+.+|+.++|||. ||..|+..+ ..||+||.++..
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----CCCccCCceecC
Confidence 45679999999999999999999 999999653 789999998864
No 61
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.11 E-value=1.2e-11 Score=78.60 Aligned_cols=45 Identities=31% Similarity=0.696 Sum_probs=39.9
Q ss_pred CcccccccccccccceecCCCCc-ccHHHHHHHhhCCCCCcccccccccc
Q 031971 50 REEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRRV 98 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 98 (150)
+...|+||++.+.+++.++|||. ||..|+..| ..||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 45679999999999999999999 999999876 4899999998654
No 62
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.02 E-value=3.1e-11 Score=82.16 Aligned_cols=47 Identities=23% Similarity=0.613 Sum_probs=1.0
Q ss_pred Ccccccccccccccc------------------eecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 50 REEECGICLEICCKI------------------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
.+..|+||++.+.++ +.++|+|.||..||.+|+.....||+||.++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 457899999998763 23589999999999999999999999999863
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=2.7e-10 Score=70.29 Aligned_cols=45 Identities=31% Similarity=0.804 Sum_probs=40.1
Q ss_pred CCcccccccccccccceecCCCCc-ccHHHHHHHhhCCCCCccccccccc
Q 031971 49 EREEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 97 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 97 (150)
.+...|.||++...+++.+||||. ||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 457889999999999999999999 99999884 4789999999864
No 64
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=8.3e-10 Score=70.24 Aligned_cols=49 Identities=20% Similarity=0.554 Sum_probs=41.1
Q ss_pred CCCcccccccccccc--cceecCCC-----CcccHHHHHHHhhCC--CCCcccccccc
Q 031971 48 IEREEECGICLEICC--KIVLPDCN-----HSMCMRCYRNWRARS--QSCPFCRDSLR 96 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~ 96 (150)
..+...|.||++.+. +++.++|+ |.||..||.+|+..+ ..||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 345678999998774 56788996 999999999999854 58999999885
No 65
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.91 E-value=3.7e-10 Score=68.22 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=43.1
Q ss_pred cccccccccccccceec-CCCCcccHHHHHHHhhCCCCCcccccccccc
Q 031971 51 EEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 98 (150)
Q Consensus 51 ~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 98 (150)
.+.|+||++.+.+|+.+ ++||+|+..||.+|+.....||+.+.++...
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 47899999999999998 9999999999999998777899999988643
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.85 E-value=3.5e-10 Score=89.99 Aligned_cols=45 Identities=27% Similarity=0.846 Sum_probs=41.0
Q ss_pred CCcccccccccccccceecCCCCc-ccHHHHHHHhhCCCCCccccccccc
Q 031971 49 EREEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 97 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 97 (150)
.+...|+||++.+.+|+.++|||. ||..|+..| ..||.||.++..
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 457899999999999999999999 999999988 789999999864
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.83 E-value=1.2e-09 Score=71.12 Aligned_cols=46 Identities=22% Similarity=0.579 Sum_probs=37.5
Q ss_pred CCcccccccccccccceec---CCCCcccHHHHHHHhhC--------CCCCcc--cccc
Q 031971 49 EREEECGICLEICCKIVLP---DCNHSMCMRCYRNWRAR--------SQSCPF--CRDS 94 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~ 94 (150)
.+.+.|+||++.+..+..+ +|||.||..|+..|+.. ...||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3577899999999887543 79999999999996541 247999 9887
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=1e-08 Score=64.21 Aligned_cols=49 Identities=20% Similarity=0.518 Sum_probs=41.0
Q ss_pred CCccccccccccccccee-cCCCCcccHHHHHHHhhCC--CCCccccccccc
Q 031971 49 EREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRARS--QSCPFCRDSLRR 97 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 97 (150)
+....|+||.+.+..... ..|+|.|+..||.+|++.. ..||+||.....
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 445789999999986543 3899999999999999876 899999988753
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.42 E-value=2.6e-07 Score=55.42 Aligned_cols=48 Identities=23% Similarity=0.511 Sum_probs=39.7
Q ss_pred CCcccccccccccccceecCCCC-----cccHHHHHHHhh--CCCCCcccccccc
Q 031971 49 EREEECGICLEICCKIVLPDCNH-----SMCMRCYRNWRA--RSQSCPFCRDSLR 96 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~CgH-----~fC~~Ci~~~~~--~~~~CP~Cr~~~~ 96 (150)
++...|.||++...++..+||.+ .||..|+.+|+. ++..||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45678999999877777788654 799999999987 4678999998774
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.32 E-value=1e-07 Score=75.37 Aligned_cols=49 Identities=24% Similarity=0.623 Sum_probs=39.2
Q ss_pred CCccccccccccccc----ce----ecCCCCcccHHHHHHHhhCC-----------CCCccccccccc
Q 031971 49 EREEECGICLEICCK----IV----LPDCNHSMCMRCYRNWRARS-----------QSCPFCRDSLRR 97 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~----p~----~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 97 (150)
+....|+||++.+.+ |. ...|||.||..|+.+|+... ..||.||.+++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 456789999998886 21 24799999999999999731 469999999863
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.27 E-value=5.4e-07 Score=58.95 Aligned_cols=46 Identities=24% Similarity=0.499 Sum_probs=38.1
Q ss_pred ccccccccccc-ceecCCCCcccHHHHHHHhh-CCCCCcccccccccc
Q 031971 53 ECGICLEICCK-IVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRV 98 (150)
Q Consensus 53 ~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~ 98 (150)
.|++|--.+.. ..++||.|.||.+|+..|.+ +.+.||.|+.++...
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 58888877665 45789999999999999875 578999999998654
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.48 E-value=0.00013 Score=55.09 Aligned_cols=48 Identities=21% Similarity=0.506 Sum_probs=39.3
Q ss_pred Cccccccccccccccee-cCCCCcccHHHHHHHhhC--CCCCccccccccc
Q 031971 50 REEECGICLEICCKIVL-PDCNHSMCMRCYRNWRAR--SQSCPFCRDSLRR 97 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 97 (150)
....|.+|.+.+..... ..|+|.||..|+..|+.. ...||.|+...+.
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 36789999999887654 349999999999999875 4589999987754
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.06 E-value=0.00024 Score=46.15 Aligned_cols=33 Identities=21% Similarity=0.452 Sum_probs=28.0
Q ss_pred Ccccccccccc-ccccee--cCCCCcccHHHHHH-Hh
Q 031971 50 REEECGICLEI-CCKIVL--PDCNHSMCMRCYRN-WR 82 (150)
Q Consensus 50 ~~~~C~IC~~~-~~~p~~--~~CgH~fC~~Ci~~-~~ 82 (150)
++..|+||.+. +.+|+. +.|+|+||..|+.. |.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 45789999975 678877 89999999999998 54
No 74
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=96.41 E-value=0.0031 Score=55.82 Aligned_cols=64 Identities=14% Similarity=0.064 Sum_probs=52.2
Q ss_pred CCCCcccccccccccccceecCCC-CcccHHHHHHHhhCCCCCccccccccccCCCCccccCchhhhh
Q 031971 47 DIEREEECGICLEICCKIVLPDCN-HSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIV 113 (150)
Q Consensus 47 ~~~~~~~C~IC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~i~ 113 (150)
+.-+.+.|||-.+.+.+||+++-| ++|=...|.+|+....+||.=|.+++.. .+.+|..+...+
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~---~liPN~~Lk~~I 951 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE---DVTPNEELRQKI 951 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG---GCEECHHHHHHH
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc---cccccHHHHHHH
Confidence 346789999999999999999998 5999999999999888999999988643 345555554443
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.43 E-value=0.022 Score=36.64 Aligned_cols=49 Identities=27% Similarity=0.531 Sum_probs=39.0
Q ss_pred CCCcccccccccccccceecCCC-CcccHHHHHHHhhCCCCCcccccccccc
Q 031971 48 IEREEECGICLEICCKIVLPDCN-HSMCMRCYRNWRARSQSCPFCRDSLRRV 98 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 98 (150)
.-....|..|.-... ..+.|. |-.|..|+...+..+..||+|+.++.+.
T Consensus 25 ~~G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 25 HLGPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CSCCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred ccCcccChhhccccC--CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 345678999985544 455555 8899999999999999999999998644
No 76
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=91.74 E-value=0.23 Score=30.92 Aligned_cols=36 Identities=25% Similarity=0.475 Sum_probs=29.0
Q ss_pred CCCcccccccccccccceecCC----CCcccHHHHHHHhh
Q 031971 48 IEREEECGICLEICCKIVLPDC----NHSMCMRCYRNWRA 83 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~~p~~~~C----gH~fC~~Ci~~~~~ 83 (150)
....+.|.+|.+.+.+.-...| +|.||..|-+...+
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence 3567899999999998755544 59999999988665
No 77
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=89.03 E-value=0.43 Score=28.45 Aligned_cols=47 Identities=17% Similarity=0.400 Sum_probs=31.8
Q ss_pred CCcccccccccccccceecCCCCcccHHHHHHHhh----CCCCCccccccc
Q 031971 49 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDSL 95 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~ 95 (150)
.....|.||.+.-.--.--.|...||..|+...+. +...||.|....
T Consensus 10 ~~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 34567999986422111237889999999977544 356899997643
No 78
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=88.84 E-value=0.62 Score=37.07 Aligned_cols=62 Identities=21% Similarity=0.344 Sum_probs=41.6
Q ss_pred CCccccccccccccccee-cCCCCcccHH--HHHHHhh--CCCCCccccccccccCCCCccccCchhhhh
Q 031971 49 EREEECGICLEICCKIVL-PDCNHSMCMR--CYRNWRA--RSQSCPFCRDSLRRVNSGDLWIYTSEDDIV 113 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~--Ci~~~~~--~~~~CP~Cr~~~~~~~~~~~~~~~~~~~i~ 113 (150)
.-.+.||+-...+..|+. ..|.|.-|.+ -+..+.. ....||+|.+.+. ..++.++..+.+++
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~---~~dL~ID~~~~~IL 313 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA---LENLAISEFVDDIL 313 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC---GGGEEEBHHHHHHH
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC---HHHeeEcHHHHHHH
Confidence 457899999999999975 6899985544 3333222 5678999988774 33455555444443
No 79
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=88.27 E-value=0.73 Score=36.53 Aligned_cols=63 Identities=16% Similarity=0.243 Sum_probs=41.5
Q ss_pred CCCccccccccccccccee-cCCCCcccHH--HHHHHhh--CCCCCccccccccccCCCCccccCchhhhh
Q 031971 48 IEREEECGICLEICCKIVL-PDCNHSMCMR--CYRNWRA--RSQSCPFCRDSLRRVNSGDLWIYTSEDDIV 113 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~--Ci~~~~~--~~~~CP~Cr~~~~~~~~~~~~~~~~~~~i~ 113 (150)
..-.+.||+-...+..|+. ..|.|.-|.+ -+..+.. ....||+|.+.+. ..++.++..+.+++
T Consensus 212 ~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~---~~dL~ID~~~~~IL 279 (360)
T 4fo9_A 212 LRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA---YESLILDGLFMEIL 279 (360)
T ss_dssp EEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC---GGGEEEBHHHHHHH
T ss_pred eEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC---HHHeEEcHHHHHHH
Confidence 3457899999999999975 6899985543 3333222 4678999998874 23455544444433
No 80
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=86.65 E-value=1.1 Score=28.14 Aligned_cols=46 Identities=20% Similarity=0.510 Sum_probs=31.9
Q ss_pred CCCcccccccccccccce--ecCCCCcccHHHHHHHhh----------------CCCCCccccc
Q 031971 48 IEREEECGICLEICCKIV--LPDCNHSMCMRCYRNWRA----------------RSQSCPFCRD 93 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~~p~--~~~CgH~fC~~Ci~~~~~----------------~~~~CP~Cr~ 93 (150)
...+..|.||-..-.+.. ---|+-.||..|+.+... ...+||.|..
T Consensus 12 ~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCCCcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 357889999985544332 225889999999999522 2358999944
No 81
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=83.89 E-value=0.46 Score=34.49 Aligned_cols=47 Identities=21% Similarity=0.413 Sum_probs=31.2
Q ss_pred CCcccccccccccccceecCCCCcccHHHHHHHhh----CCCCCccccccc
Q 031971 49 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDSL 95 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~ 95 (150)
..+..|.+|...=.-..--.|...||..|+.+-+. +...||.|+..-
T Consensus 5 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 34567999985422111236888999999866333 457899998754
No 82
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=83.22 E-value=1.9 Score=27.27 Aligned_cols=47 Identities=26% Similarity=0.672 Sum_probs=35.9
Q ss_pred Ccccccccccccccc----e---ecCCCCcccHHHHHH-HhhCCCCCcccccccc
Q 031971 50 REEECGICLEICCKI----V---LPDCNHSMCMRCYRN-WRARSQSCPFCRDSLR 96 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p----~---~~~CgH~fC~~Ci~~-~~~~~~~CP~Cr~~~~ 96 (150)
....|.||-+.+-.. + --.|+-..|..|..- ..+....||.|+....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 457899999876531 2 236777889999877 6668899999998875
No 83
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=82.17 E-value=1.1 Score=25.98 Aligned_cols=46 Identities=22% Similarity=0.496 Sum_probs=30.8
Q ss_pred CCCcccccccccccccceecCCCCcccHHHHHHHhh----CCCCCccccc
Q 031971 48 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRD 93 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~ 93 (150)
...+..|.+|...-.--.--.|...||..|+..-+. ....||.|..
T Consensus 8 ~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCCSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCCCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 356778999987321111236888999999987332 4568999965
No 84
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=77.95 E-value=0.95 Score=27.28 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=32.9
Q ss_pred CCcccccccccccccceec---CCCCcccHHHHHHHhh----CCCCCcccccccc
Q 031971 49 EREEECGICLEICCKIVLP---DCNHSMCMRCYRNWRA----RSQSCPFCRDSLR 96 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~~ 96 (150)
.+...|.+|...-....++ .|...||..|+..-.. ....||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 4556799998765432233 6888999999865322 3567999987664
No 85
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=77.06 E-value=1.1 Score=28.07 Aligned_cols=48 Identities=25% Similarity=0.499 Sum_probs=33.0
Q ss_pred CCCcccccccccccc-c-ceec---CCCCcccHHHHHHH--hhCCCCCccccccc
Q 031971 48 IEREEECGICLEICC-K-IVLP---DCNHSMCMRCYRNW--RARSQSCPFCRDSL 95 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~-~-p~~~---~CgH~fC~~Ci~~~--~~~~~~CP~Cr~~~ 95 (150)
..++..|.||...-. + ..++ .|.-.|+..|+..- -.+...||.|....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 356789999997642 1 1222 68789999998752 22567899997654
No 86
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=76.89 E-value=1 Score=30.16 Aligned_cols=30 Identities=20% Similarity=0.495 Sum_probs=22.2
Q ss_pred cccccccccccccce----ecCCCCcccHHHHHH
Q 031971 51 EEECGICLEICCKIV----LPDCNHSMCMRCYRN 80 (150)
Q Consensus 51 ~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~ 80 (150)
...|.+|...|.--. --.||+.||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 457999999887431 237999999999543
No 87
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=76.46 E-value=1.4 Score=29.89 Aligned_cols=30 Identities=27% Similarity=0.672 Sum_probs=21.3
Q ss_pred CCccccccccccccc-----ceecCCCCcccHHHH
Q 031971 49 EREEECGICLEICCK-----IVLPDCNHSMCMRCY 78 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci 78 (150)
.....|.+|...+.- .+-..|.|.+|..|-
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 457889999998841 134578888888773
No 88
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=72.57 E-value=1.4 Score=30.69 Aligned_cols=44 Identities=20% Similarity=0.445 Sum_probs=30.2
Q ss_pred Cccccccccccccc-----ceecCCCCcccHHHHHHHhh--CCCCCcccccc
Q 031971 50 REEECGICLEICCK-----IVLPDCNHSMCMRCYRNWRA--RSQSCPFCRDS 94 (150)
Q Consensus 50 ~~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~ 94 (150)
.+..|.+|...|.- .+-..|.|.+|..|-. |.. ....|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 57899999997652 1345899999999952 322 34567777654
No 89
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=72.53 E-value=2.4 Score=29.94 Aligned_cols=46 Identities=22% Similarity=0.453 Sum_probs=30.4
Q ss_pred CcccccccccccccceecCCCCcccHHHHHHHhh----CCCCCccccccc
Q 031971 50 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDSL 95 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~ 95 (150)
.+..|.+|.+.=.-..--.|...||..|+.+-+. +...||.|+..-
T Consensus 3 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 4567999985422111236888999999866333 457899998754
No 90
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=72.26 E-value=1.9 Score=25.85 Aligned_cols=29 Identities=17% Similarity=0.437 Sum_probs=21.7
Q ss_pred cccccccccccccce----ecCCCCcccHHHHH
Q 031971 51 EEECGICLEICCKIV----LPDCNHSMCMRCYR 79 (150)
Q Consensus 51 ~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~ 79 (150)
+..|.+|...|.--. --.||..||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 458999998887432 23799999999853
No 91
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=71.55 E-value=4.7 Score=27.62 Aligned_cols=45 Identities=22% Similarity=0.474 Sum_probs=31.7
Q ss_pred CCcccccccccccccceecCCCCcccHHHHHHHh-----------hCCCCCccccc
Q 031971 49 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWR-----------ARSQSCPFCRD 93 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~-----------~~~~~CP~Cr~ 93 (150)
..+..|.+|.+-=.--.--.|...||..|+.+-+ .....||.|+.
T Consensus 61 g~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4567899998654322234788899999999632 24578999964
No 92
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=71.01 E-value=3.3 Score=24.05 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=28.7
Q ss_pred ccccccccccccce---ecCCCCcccHHHHHHHhhCCCCCccc
Q 031971 52 EECGICLEICCKIV---LPDCNHSMCMRCYRNWRARSQSCPFC 91 (150)
Q Consensus 52 ~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~CP~C 91 (150)
..|--|...+.+.. -..|++.||.+|=.=..+.--.||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 35888998887654 35789999999944333445678877
No 93
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=69.26 E-value=2.1 Score=30.66 Aligned_cols=45 Identities=16% Similarity=0.367 Sum_probs=29.1
Q ss_pred cccccccccccccceecCCCCcccHHHHHHHhh----CCCCCccccccc
Q 031971 51 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDSL 95 (150)
Q Consensus 51 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~ 95 (150)
+..|.+|...-.--.-..|...||..|+.+-+. +...||.|+..-
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 356889985432112236777899999865222 456899997653
No 94
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=69.24 E-value=5.8 Score=26.71 Aligned_cols=45 Identities=22% Similarity=0.474 Sum_probs=30.8
Q ss_pred CCcccccccccccccceecCCCCcccHHHHHHHh-----------hCCCCCccccc
Q 031971 49 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWR-----------ARSQSCPFCRD 93 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~-----------~~~~~CP~Cr~ 93 (150)
..+..|.+|.+--.-..--.|-..||..|+.+-+ .....|+.|+.
T Consensus 55 g~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 4556799998653322223788999999998631 24578999954
No 95
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=69.18 E-value=0.77 Score=23.75 Aligned_cols=15 Identities=13% Similarity=0.235 Sum_probs=9.9
Q ss_pred Ccccccccccccccc
Q 031971 50 REEECGICLEICCKI 64 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p 64 (150)
+.+.||+|+..+..+
T Consensus 4 EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 4 EGFICPQCMKSLGSA 18 (34)
T ss_dssp EEEECTTTCCEESSH
T ss_pred cccCCcHHHHHcCCH
Confidence 456777777766654
No 96
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=68.26 E-value=2.3 Score=26.15 Aligned_cols=31 Identities=23% Similarity=0.535 Sum_probs=22.8
Q ss_pred Ccccccccccccccce----ecCCCCcccHHHHHH
Q 031971 50 REEECGICLEICCKIV----LPDCNHSMCMRCYRN 80 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~ 80 (150)
+...|.+|...|.--. --.||..||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 3457999999887431 237999999999654
No 97
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=68.05 E-value=2.5 Score=23.33 Aligned_cols=41 Identities=24% Similarity=0.556 Sum_probs=26.2
Q ss_pred ccccccccccccee---cCCCCcccHHHHHHHhh----CCCCCccccc
Q 031971 53 ECGICLEICCKIVL---PDCNHSMCMRCYRNWRA----RSQSCPFCRD 93 (150)
Q Consensus 53 ~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~ 93 (150)
.|.+|...-....+ -.|...||..|+.+=+. +...||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 47788754322222 26888999999965222 3567999965
No 98
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=68.02 E-value=2.3 Score=25.54 Aligned_cols=46 Identities=24% Similarity=0.569 Sum_probs=31.4
Q ss_pred CCcccccccccccc---ccee--cCCCCcccHHHHHHH--hhCCCCCcccccc
Q 031971 49 EREEECGICLEICC---KIVL--PDCNHSMCMRCYRNW--RARSQSCPFCRDS 94 (150)
Q Consensus 49 ~~~~~C~IC~~~~~---~p~~--~~CgH~fC~~Ci~~~--~~~~~~CP~Cr~~ 94 (150)
..+..|.||...-. +.++ -.|.-.|+..|+..- -.+...||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 56788999987641 2222 278889999998652 2246789999654
No 99
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.63 E-value=0.72 Score=26.29 Aligned_cols=45 Identities=20% Similarity=0.475 Sum_probs=28.4
Q ss_pred CCcccccccccccccceecCCCCcccHHHHHHHhh----CCCCCccccc
Q 031971 49 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRD 93 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~ 93 (150)
..+..|.+|...-.--.--.|...||..|+.+-+. ....||.|..
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 45678999987421111236778899999875222 3456888854
No 100
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=67.36 E-value=0.39 Score=29.61 Aligned_cols=20 Identities=20% Similarity=0.835 Sum_probs=15.8
Q ss_pred CCCCcccHHHHHHHhhCCCCCc
Q 031971 68 DCNHSMCMRCYRNWRARSQSCP 89 (150)
Q Consensus 68 ~CgH~fC~~Ci~~~~~~~~~CP 89 (150)
.||+.||..|...|.. ..|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 6899999999888855 5553
No 101
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=67.22 E-value=2.6 Score=26.03 Aligned_cols=31 Identities=23% Similarity=0.537 Sum_probs=23.2
Q ss_pred Ccccccccccccccce----ecCCCCcccHHHHHH
Q 031971 50 REEECGICLEICCKIV----LPDCNHSMCMRCYRN 80 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~ 80 (150)
+...|.+|...|.--. --.||..||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 4568999999887432 247999999999654
No 102
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=67.09 E-value=1.3 Score=25.73 Aligned_cols=46 Identities=20% Similarity=0.366 Sum_probs=29.5
Q ss_pred CCcccccccccccccceecCCCCcccHHHHHHHhh----CCCCCcccccc
Q 031971 49 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDS 94 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~ 94 (150)
..+..|.+|.+.-.--.--.|...||..|+..-+. ....||.|...
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 45677999986321111226778899999875222 35679999764
No 103
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=65.38 E-value=2.3 Score=30.95 Aligned_cols=33 Identities=15% Similarity=0.339 Sum_probs=23.7
Q ss_pred CCCcccccccccccccce----ecCCCCcccHHHHHH
Q 031971 48 IEREEECGICLEICCKIV----LPDCNHSMCMRCYRN 80 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~ 80 (150)
+.++..|.+|...|.--. --.||+.||..|...
T Consensus 158 W~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 158 WADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 345679999998887321 237999999988543
No 104
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=65.33 E-value=2.6 Score=27.19 Aligned_cols=12 Identities=33% Similarity=1.082 Sum_probs=10.7
Q ss_pred cccHHHHHHHhh
Q 031971 72 SMCMRCYRNWRA 83 (150)
Q Consensus 72 ~fC~~Ci~~~~~ 83 (150)
.||..|+..|..
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 105
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=65.31 E-value=2.6 Score=27.14 Aligned_cols=12 Identities=25% Similarity=0.977 Sum_probs=10.7
Q ss_pred cccHHHHHHHhh
Q 031971 72 SMCMRCYRNWRA 83 (150)
Q Consensus 72 ~fC~~Ci~~~~~ 83 (150)
.||..|+..|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 106
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.05 E-value=2.7 Score=25.90 Aligned_cols=30 Identities=23% Similarity=0.595 Sum_probs=22.0
Q ss_pred Ccccccccccccccce----ecCCCCcccHHHHH
Q 031971 50 REEECGICLEICCKIV----LPDCNHSMCMRCYR 79 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~ 79 (150)
+...|.+|...|.--. --.||..||..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 3467999999886331 23799999999944
No 107
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=64.90 E-value=1.1 Score=26.03 Aligned_cols=46 Identities=22% Similarity=0.456 Sum_probs=31.0
Q ss_pred CCccccccccccccc-ceec---CCCCcccHHHHHHHhh-----CCCCCcccccc
Q 031971 49 EREEECGICLEICCK-IVLP---DCNHSMCMRCYRNWRA-----RSQSCPFCRDS 94 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~-p~~~---~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~ 94 (150)
.+...|++|.....+ ...+ .|...||..|+.--.. ....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 456789999987643 2233 6778899999754211 45679999764
No 108
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=63.18 E-value=3 Score=30.58 Aligned_cols=33 Identities=21% Similarity=0.461 Sum_probs=24.2
Q ss_pred CCCcccccccccccccce----ecCCCCcccHHHHHH
Q 031971 48 IEREEECGICLEICCKIV----LPDCNHSMCMRCYRN 80 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~ 80 (150)
+.+...|.+|...|.--. --.||+.||..|...
T Consensus 161 W~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 161 WVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cccCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 345679999998887321 247999999999654
No 109
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=62.80 E-value=0.67 Score=27.03 Aligned_cols=34 Identities=24% Similarity=0.606 Sum_probs=22.5
Q ss_pred cccccccccccccc-----eecC---CCCcccHHHHHHHhhC
Q 031971 51 EEECGICLEICCKI-----VLPD---CNHSMCMRCYRNWRAR 84 (150)
Q Consensus 51 ~~~C~IC~~~~~~p-----~~~~---CgH~fC~~Ci~~~~~~ 84 (150)
.-.||-|...+... ++-. |++.||..|...|...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 34688888776642 2222 7888888887777653
No 110
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=62.26 E-value=5 Score=26.17 Aligned_cols=47 Identities=13% Similarity=0.073 Sum_probs=35.4
Q ss_pred Cccccccccccccc---ceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 50 REEECGICLEICCK---IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 50 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
+-+.|..|...+.+ .....=|..||..|..+.......|..|..++.
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 35789999988863 344566778999998876554458999999885
No 111
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=61.81 E-value=3 Score=26.14 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=22.9
Q ss_pred Ccccccccccccccc----eecCCCCcccHHHHHH
Q 031971 50 REEECGICLEICCKI----VLPDCNHSMCMRCYRN 80 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~ 80 (150)
+...|.+|...|.-- .--.||+.||..|...
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 346799999888732 1247999999999654
No 112
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=61.57 E-value=1.2 Score=26.24 Aligned_cols=46 Identities=20% Similarity=0.466 Sum_probs=30.0
Q ss_pred CCcccccccccccccceecCCCCcccHHHHHHHhh----CCCCCcccccc
Q 031971 49 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDS 94 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~ 94 (150)
..+..|.+|.+.-.--.--.|...||..|+.+-+. ....||.|...
T Consensus 6 ~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 45778999986421111236878899999875222 45679999654
No 113
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=61.20 E-value=0.73 Score=30.82 Aligned_cols=46 Identities=22% Similarity=0.520 Sum_probs=29.1
Q ss_pred CCcccccccccccccc----eecCCCCcccHHHHHHHhhCCCCCcccccc
Q 031971 49 EREEECGICLEICCKI----VLPDCNHSMCMRCYRNWRARSQSCPFCRDS 94 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~ 94 (150)
.....|..|...|.-. ---.||..||..|..........|-.|-..
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 3456899999988743 234899999999966544445667777553
No 114
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=61.10 E-value=2.1 Score=27.88 Aligned_cols=28 Identities=14% Similarity=0.305 Sum_probs=18.7
Q ss_pred cceecCCCCcccHHHHHHHhhCCCCCccccccc
Q 031971 63 KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 95 (150)
Q Consensus 63 ~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 95 (150)
.+.-..||+.|. .-......||.|+...
T Consensus 67 p~~C~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 67 PAQCRKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp CCBBTTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred CcChhhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 445668999982 1123457899998864
No 115
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=60.59 E-value=3.6 Score=25.70 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=23.6
Q ss_pred CCcccccccccccccce----ecCCCCcccHHHHHH
Q 031971 49 EREEECGICLEICCKIV----LPDCNHSMCMRCYRN 80 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~ 80 (150)
.+...|.+|...|.--. --.||..||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 34567999999887431 247999999999654
No 116
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.51 E-value=1.1 Score=28.34 Aligned_cols=49 Identities=16% Similarity=0.231 Sum_probs=31.7
Q ss_pred cCCCCccccccccccccccee---cCCCCcccHHHHHHHh----hCCCCCcccccc
Q 031971 46 IDIEREEECGICLEICCKIVL---PDCNHSMCMRCYRNWR----ARSQSCPFCRDS 94 (150)
Q Consensus 46 ~~~~~~~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~----~~~~~CP~Cr~~ 94 (150)
....+...|.||...-....+ -.|...||..|+.+-+ .....||.|...
T Consensus 11 ~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hhccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 334566789999876432222 2677888888986422 235679999664
No 117
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=59.87 E-value=3 Score=26.24 Aligned_cols=47 Identities=15% Similarity=0.359 Sum_probs=31.2
Q ss_pred CCCcccccccccccccceecCCCCcccHHHHHHHhh----CCCCCcccccc
Q 031971 48 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDS 94 (150)
Q Consensus 48 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~ 94 (150)
...+..|.+|...-.--.--.|.-.|+..|+.+-+. +...||.|...
T Consensus 22 d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 355778999996521111236777899999866332 45679999764
No 118
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=59.65 E-value=2 Score=25.01 Aligned_cols=47 Identities=17% Similarity=0.333 Sum_probs=31.9
Q ss_pred CCcccccccccccc---ccee--cCCCCcccHHHHHHH-------hhCCCCCccccccc
Q 031971 49 EREEECGICLEICC---KIVL--PDCNHSMCMRCYRNW-------RARSQSCPFCRDSL 95 (150)
Q Consensus 49 ~~~~~C~IC~~~~~---~p~~--~~CgH~fC~~Ci~~~-------~~~~~~CP~Cr~~~ 95 (150)
.++..|.+|..... ..++ -.|...||..|+..- -.....||.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 45778999997643 2222 378889999998752 12457899997644
No 119
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=59.43 E-value=14 Score=23.75 Aligned_cols=44 Identities=27% Similarity=0.486 Sum_probs=27.7
Q ss_pred CCccccccccccc-----cc--cee--cCCCCcccHHHHHH-------HhhCCCCCcccc
Q 031971 49 EREEECGICLEIC-----CK--IVL--PDCNHSMCMRCYRN-------WRARSQSCPFCR 92 (150)
Q Consensus 49 ~~~~~C~IC~~~~-----~~--p~~--~~CgH~fC~~Ci~~-------~~~~~~~CP~Cr 92 (150)
.....|.+|...- .+ ..+ ..|+..||..|+.. .......||.|+
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred ccCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 3456799998642 11 222 37999999999842 223456677774
No 120
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=57.53 E-value=1.9 Score=27.02 Aligned_cols=47 Identities=13% Similarity=0.398 Sum_probs=32.6
Q ss_pred Ccccccccccccc---cceec--CCCCcccHHHHHHHh--------hCCCCCcccccccc
Q 031971 50 REEECGICLEICC---KIVLP--DCNHSMCMRCYRNWR--------ARSQSCPFCRDSLR 96 (150)
Q Consensus 50 ~~~~C~IC~~~~~---~p~~~--~CgH~fC~~Ci~~~~--------~~~~~CP~Cr~~~~ 96 (150)
.+..|.+|...-. +.+++ .|...||..|+.+-+ .....|+.|.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 4678999997643 23332 788899999987622 24578999977554
No 121
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.37 E-value=7.4 Score=23.12 Aligned_cols=40 Identities=15% Similarity=0.324 Sum_probs=30.6
Q ss_pred CCcccccccccccccceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 49 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
.....|+-|...+...++..-+..||..| ..|-.|+..+.
T Consensus 13 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGVFVKLRDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCCSSSCCCCCSSCEECSSCEECTTT--------TSCSSSCCCHH
T ss_pred CCCCccccCCCCccCcEEEECcceeCcCc--------CeeCCCCCCCC
Confidence 45678999999888766666777777777 67888888774
No 122
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=55.96 E-value=12 Score=29.84 Aligned_cols=27 Identities=26% Similarity=0.712 Sum_probs=21.1
Q ss_pred CCCCcccHHHHHHHhh----------CCCCCcccccc
Q 031971 68 DCNHSMCMRCYRNWRA----------RSQSCPFCRDS 94 (150)
Q Consensus 68 ~CgH~fC~~Ci~~~~~----------~~~~CP~Cr~~ 94 (150)
.|...||..||...+. ....|-+|...
T Consensus 112 ~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 112 DCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp TCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 7889999999998763 35678888543
No 123
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=55.61 E-value=6.1 Score=34.38 Aligned_cols=48 Identities=25% Similarity=0.587 Sum_probs=35.7
Q ss_pred CCcccccccccccccc----------eecCCCCcc--------------------cHHHHHHHhh--------CCCCCcc
Q 031971 49 EREEECGICLEICCKI----------VLPDCNHSM--------------------CMRCYRNWRA--------RSQSCPF 90 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p----------~~~~CgH~f--------------------C~~Ci~~~~~--------~~~~CP~ 90 (150)
-+.-.|+-|+..+.+| .-+.||..| |..|-.++.. +...||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 3456899999988875 234677766 9999999865 3468999
Q ss_pred cccccc
Q 031971 91 CRDSLR 96 (150)
Q Consensus 91 Cr~~~~ 96 (150)
|--.+.
T Consensus 184 CGP~l~ 189 (772)
T 4g9i_A 184 CGPSYR 189 (772)
T ss_dssp TSCCEE
T ss_pred CCceEE
Confidence 976653
No 124
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=55.18 E-value=6 Score=33.79 Aligned_cols=47 Identities=23% Similarity=0.587 Sum_probs=35.2
Q ss_pred CCcccccccccccccc----------eecCCCCcc--------------------cHHHHHHHhh--------CCCCCcc
Q 031971 49 EREEECGICLEICCKI----------VLPDCNHSM--------------------CMRCYRNWRA--------RSQSCPF 90 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p----------~~~~CgH~f--------------------C~~Ci~~~~~--------~~~~CP~ 90 (150)
-+.-.|+-|+..+.+| .-+.||..| |..|..++.. +...||.
T Consensus 15 pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~ 94 (657)
T 3ttc_A 15 PDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPE 94 (657)
T ss_dssp CCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCcc
Confidence 4567899999888875 234677666 9999999865 3468999
Q ss_pred ccccc
Q 031971 91 CRDSL 95 (150)
Q Consensus 91 Cr~~~ 95 (150)
|--.+
T Consensus 95 CGP~l 99 (657)
T 3ttc_A 95 CGPYL 99 (657)
T ss_dssp TSCCE
T ss_pred cCccc
Confidence 96655
No 125
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=54.54 E-value=1.8 Score=24.89 Aligned_cols=46 Identities=20% Similarity=0.492 Sum_probs=29.1
Q ss_pred CcccccccccccccceecCCCCcccHHHHHHHhh----CCCCCccccccc
Q 031971 50 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDSL 95 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~ 95 (150)
.+..|.+|...-.--.--.|...|+..|+.+-+. +...||.|....
T Consensus 4 ~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCCSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 4667999987421111236888899999875222 346799886654
No 126
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=53.04 E-value=7.7 Score=23.18 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=29.6
Q ss_pred cccccccccccccceec---CCCCcccHHHHHHH---------hhCCCCCccccccc
Q 031971 51 EEECGICLEICCKIVLP---DCNHSMCMRCYRNW---------RARSQSCPFCRDSL 95 (150)
Q Consensus 51 ~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~---------~~~~~~CP~Cr~~~ 95 (150)
...| +|........++ .|...||..|+.-- ......||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 4667 898876543333 67889999998421 12568899997643
No 127
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=52.39 E-value=13 Score=22.47 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=31.0
Q ss_pred CCcccccccccccccceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 49 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
.....|.-|.+.+...++..-+..||..| ..|-.|...+.
T Consensus 23 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 62 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAVVKARDKYRHPEC--------FVCADCNLNLK 62 (89)
T ss_dssp CSCCBCTTTCCBCCSCCEESSSCEECTTT--------CCCSSSCCCTT
T ss_pred CcCCCcccCCCEecccEEEECCceECccC--------CEecCCCCCCC
Confidence 44578999999888766666777787777 67888988875
No 128
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=51.83 E-value=1.4 Score=34.24 Aligned_cols=46 Identities=20% Similarity=0.431 Sum_probs=34.8
Q ss_pred CCcccccccccccccceec----CCC--CcccHHHHHHHhhCCCCCcccccc
Q 031971 49 EREEECGICLEICCKIVLP----DCN--HSMCMRCYRNWRARSQSCPFCRDS 94 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~----~Cg--H~fC~~Ci~~~~~~~~~CP~Cr~~ 94 (150)
+....||+|-....-.++. .=| +.+|..|-..|......||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 5678999999877655443 244 356889988898888899999764
No 129
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=51.61 E-value=15 Score=25.56 Aligned_cols=26 Identities=19% Similarity=0.664 Sum_probs=20.0
Q ss_pred CCCCcccHHHHHHHhh----------CCCCCccccc
Q 031971 68 DCNHSMCMRCYRNWRA----------RSQSCPFCRD 93 (150)
Q Consensus 68 ~CgH~fC~~Ci~~~~~----------~~~~CP~Cr~ 93 (150)
+|...||..||..... ....|-+|..
T Consensus 98 ~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 98 NCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp TTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 5888999999998664 2457888854
No 130
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.37 E-value=12 Score=22.17 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=29.3
Q ss_pred CcccccccccccccceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 50 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
....|+-|...+....+..-|..||..| ..|..|+.++.
T Consensus 14 ~~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 2cor_A 14 GKYICQKCHAIIDEQPLIFKNDPYHPDH--------FNCANCGKELT 52 (79)
T ss_dssp CCCBCTTTCCBCCSCCCCCSSSCCCTTT--------SBCSSSCCBCC
T ss_pred CCCCCccCCCEecceEEEECcceeCCCC--------CEeCCCCCccC
Confidence 3567999998888666666677777766 67888888875
No 131
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=51.02 E-value=7.3 Score=33.85 Aligned_cols=48 Identities=23% Similarity=0.496 Sum_probs=35.0
Q ss_pred CCcccccccccccccc----------eecCCCCcc--------------------cHHHHHHHhh--------CCCCCcc
Q 031971 49 EREEECGICLEICCKI----------VLPDCNHSM--------------------CMRCYRNWRA--------RSQSCPF 90 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p----------~~~~CgH~f--------------------C~~Ci~~~~~--------~~~~CP~ 90 (150)
-+.-.|+-|+..+.+| .-+.||..| |..|..++.. +...||.
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~ 188 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFD 188 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTT
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCc
Confidence 3456899999988875 234677554 9999999865 3467999
Q ss_pred cccccc
Q 031971 91 CRDSLR 96 (150)
Q Consensus 91 Cr~~~~ 96 (150)
|--.+.
T Consensus 189 CGP~l~ 194 (761)
T 3vth_A 189 CGPSLS 194 (761)
T ss_dssp TSCCEE
T ss_pred cCCeeE
Confidence 966553
No 132
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=50.67 E-value=4 Score=25.98 Aligned_cols=43 Identities=19% Similarity=0.301 Sum_probs=28.1
Q ss_pred Ccccccccccccccceec---CCCCcccHHHHHHHhh---CCCCCccccc
Q 031971 50 REEECGICLEICCKIVLP---DCNHSMCMRCYRNWRA---RSQSCPFCRD 93 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~---~~~~CP~Cr~ 93 (150)
+...| ||.....+..++ .|...|+..|+..-.. ....||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34567 787665544444 6777899999865222 3468999964
No 133
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=48.83 E-value=8 Score=22.95 Aligned_cols=33 Identities=27% Similarity=0.580 Sum_probs=24.0
Q ss_pred CCcccccccccccccceecCC-CCcccHHHHHHHh
Q 031971 49 EREEECGICLEICCKIVLPDC-NHSMCMRCYRNWR 82 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~C-gH~fC~~Ci~~~~ 82 (150)
++..-|.||.+.-. -.-+.| |-.||..|..+..
T Consensus 6 ee~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNEDAT-LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSCCC-EEETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCCCe-EEecCCCCceehHHHHHHHc
Confidence 45567999998732 335688 6799999987743
No 134
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=48.04 E-value=8 Score=23.04 Aligned_cols=45 Identities=16% Similarity=0.434 Sum_probs=28.7
Q ss_pred CCcccccccccccccceec---C--CC-CcccHHHHHHHh--hCCCCCccccccc
Q 031971 49 EREEECGICLEICCKIVLP---D--CN-HSMCMRCYRNWR--ARSQSCPFCRDSL 95 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~---~--Cg-H~fC~~Ci~~~~--~~~~~CP~Cr~~~ 95 (150)
.+...| +|...-.. .++ . |. ..||..|+.--. .....||.|+..-
T Consensus 14 ~~~~~C-~C~~~~~g-~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSCS-SEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCCC-CEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccc
Confidence 456678 89875433 243 3 55 589999986211 1456799997644
No 135
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=48.03 E-value=8 Score=21.95 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=26.6
Q ss_pred cccccccccccccceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 51 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 51 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
...|+.|...+....+..-|..|+..| ..|..|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (66)
T 1nyp_A 5 VPICGACRRPIEGRVVNAMGKQWHVEH--------FVCAKCEKPFL 42 (66)
T ss_dssp CCEETTTTEECCSCEECCTTSBEETTT--------CBCTTTCCBCS
T ss_pred CCCCcccCCEecceEEEECccccccCc--------CEECCCCCCCC
Confidence 356888888777655556666676666 66888877764
No 136
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.72 E-value=9.2 Score=22.40 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=22.3
Q ss_pred ccccccccccccceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 52 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 52 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
..|+-|...+...++..-+..||..| ..|-.|..++.
T Consensus 6 ~~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSSCCBCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecCeeEEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 35777777666555555565666555 55666666553
No 137
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=47.34 E-value=4.1 Score=26.26 Aligned_cols=44 Identities=16% Similarity=0.336 Sum_probs=29.0
Q ss_pred CCccccccccccccc-c--eecCCCCcccHHHHHHHhh----CCCCCcccc
Q 031971 49 EREEECGICLEICCK-I--VLPDCNHSMCMRCYRNWRA----RSQSCPFCR 92 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~-p--~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr 92 (150)
.++..|.+|.+.-.. . .-..|+..||..|+..... ....||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 457789999876432 1 1247889999999976433 344566664
No 138
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.60 E-value=6.2 Score=24.14 Aligned_cols=39 Identities=18% Similarity=0.383 Sum_probs=29.7
Q ss_pred CcccccccccccccceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 50 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
....|+-|...+....+..-|..||..| ..|-.|+.++.
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 62 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEE--------FNCAHCKNTMA 62 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCccCCCEecceEEEECCccccccC--------CccCCCCCCCC
Confidence 4567999999887666666677777776 67888888775
No 139
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=46.20 E-value=11 Score=24.56 Aligned_cols=48 Identities=19% Similarity=0.358 Sum_probs=34.2
Q ss_pred CCccccccccccccc---ceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 49 EREEECGICLEICCK---IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
.+-+.|..|...+.. +....=|..||..|..+.......|..|..++.
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 356889999988853 344556778999998775433337999988774
No 140
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.50 E-value=16 Score=20.89 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=26.0
Q ss_pred cccccccccccc--cceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 51 EEECGICLEICC--KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 51 ~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
...|+-|...+. +.++..-|..|+..| ..|-.|..++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHC--------FLCSGCEQPLG 44 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTT--------CBCTTTCCBTT
T ss_pred CCCCccCCCccccCccEEEECccccCccc--------CeECCCCCcCC
Confidence 356888888777 345556677777766 66777877764
No 141
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=45.29 E-value=6.9 Score=27.52 Aligned_cols=47 Identities=19% Similarity=0.357 Sum_probs=31.6
Q ss_pred Cccccccccccccc---ceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 50 REEECGICLEICCK---IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 50 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
+-+.|..|...+.. .....=|..||..|..+.......|..|..++.
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccc
Confidence 46788888888764 444455778899887664332226888877664
No 142
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.72 E-value=10 Score=22.49 Aligned_cols=37 Identities=16% Similarity=0.315 Sum_probs=25.5
Q ss_pred ccccccccccccceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 52 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 52 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
..|+.|.+.+.+..+..-+..||..| ..|..|..++.
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMTGPFMVAGEFKYHPEC--------FACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCCSCCBCCTTCCBCTTS--------CBCTTTCCBCC
T ss_pred CcCccCCCCcCceEEEECCceecccc--------CCccCCCCccC
Confidence 46888888777655555666666665 66788877764
No 143
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.40 E-value=10 Score=21.69 Aligned_cols=37 Identities=19% Similarity=0.347 Sum_probs=22.5
Q ss_pred ccccccccccccceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 52 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 52 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
..|+-|...+....+..-+..|+..| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITTGGVTYREQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCSSEEESSSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCcccCCeeccceEEECccccCCCC--------CccCCCCCcCC
Confidence 45777777666554445555666555 55667766653
No 144
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=44.25 E-value=4.7 Score=31.93 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=0.0
Q ss_pred cccccccccccccc----eecCCCCcccHHHHHHH
Q 031971 51 EEECGICLEICCKI----VLPDCNHSMCMRCYRNW 81 (150)
Q Consensus 51 ~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~ 81 (150)
...|.+|...|.-- .--.||+.||..|....
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~ 409 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNK 409 (434)
T ss_dssp -----------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCe
Confidence 56799999887632 23479999999998653
No 145
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=43.18 E-value=18 Score=23.27 Aligned_cols=45 Identities=18% Similarity=0.378 Sum_probs=34.0
Q ss_pred Ccccccccccccccc-eecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 50 REEECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
+-+.|..|...+... ....=|..||..|..+. ....|..|..++.
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKN--HAVVCQGCHNAID 74 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHH--SCCBCTTTCSBCC
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcC--cCccCcccCCcCC
Confidence 468899999888753 34566778999997653 4578999998885
No 146
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.10 E-value=7 Score=22.51 Aligned_cols=38 Identities=26% Similarity=0.533 Sum_probs=23.8
Q ss_pred cccccccccccccceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 51 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 51 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
...|+-|...+...++..-+..||..| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRVIKAMNNSWHPEC--------FRCDLCQEVLA 42 (70)
T ss_dssp SSBCSSSCCBCCSCCEEETTEEECTTT--------SBCSSSCCBCS
T ss_pred CCcCccCCCEecceEEEECcccccccC--------CEeCCCCCcCC
Confidence 346777777766555445555566655 56777777664
No 147
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=42.69 E-value=4.6 Score=28.81 Aligned_cols=44 Identities=14% Similarity=0.304 Sum_probs=30.1
Q ss_pred ccccccccccccce----ec---CCCCcccHHHHHHH------hh-----CCCCCccccccc
Q 031971 52 EECGICLEICCKIV----LP---DCNHSMCMRCYRNW------RA-----RSQSCPFCRDSL 95 (150)
Q Consensus 52 ~~C~IC~~~~~~p~----~~---~CgH~fC~~Ci~~~------~~-----~~~~CP~Cr~~~ 95 (150)
..|+||.....+.- .+ .|...||..|..-- .. ....||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 46999998776542 33 57789999997321 11 257899998754
No 148
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=41.05 E-value=8.7 Score=24.19 Aligned_cols=45 Identities=16% Similarity=0.434 Sum_probs=28.5
Q ss_pred CCcccccccccccccceec---C--CC-CcccHHHHHHHh--hCCCCCccccccc
Q 031971 49 EREEECGICLEICCKIVLP---D--CN-HSMCMRCYRNWR--ARSQSCPFCRDSL 95 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~---~--Cg-H~fC~~Ci~~~~--~~~~~CP~Cr~~~ 95 (150)
.+...| +|...... .++ . |. ..||..|+.--. .....||.|+...
T Consensus 34 ~e~~yC-iC~~~~~g-~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCCS-CCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCCC-CEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 345677 99886543 344 3 55 579999986211 1356899997643
No 149
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=40.60 E-value=11 Score=22.73 Aligned_cols=45 Identities=20% Similarity=0.312 Sum_probs=30.0
Q ss_pred CCcccccccccccccceec-----CCCCcccHHHHHHHh---------hCCCCCcccccc
Q 031971 49 EREEECGICLEICCKIVLP-----DCNHSMCMRCYRNWR---------ARSQSCPFCRDS 94 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~-----~CgH~fC~~Ci~~~~---------~~~~~CP~Cr~~ 94 (150)
.....| ||........++ .|...||..|+.--. .....||.|+..
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 356678 898874444333 577899999985311 135679999764
No 150
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.51 E-value=19 Score=20.66 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=23.8
Q ss_pred ccccccccccccc----ceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 51 EEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 51 ~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
...|+-|...+.. .++..-+..||..| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCccc--------CEeccCCCcCC
Confidence 3467777777664 34445566666666 56777776663
No 151
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=39.06 E-value=1.6 Score=27.11 Aligned_cols=28 Identities=29% Similarity=0.771 Sum_probs=19.8
Q ss_pred cccccccccc-----ceec-CCCCcccHHHHHHH
Q 031971 54 CGICLEICCK-----IVLP-DCNHSMCMRCYRNW 81 (150)
Q Consensus 54 C~IC~~~~~~-----p~~~-~CgH~fC~~Ci~~~ 81 (150)
||-|...+.. .+.- .||+.||..|-..|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 8877664431 2343 49999999998888
No 152
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=38.44 E-value=4.4 Score=23.30 Aligned_cols=43 Identities=16% Similarity=0.447 Sum_probs=26.3
Q ss_pred CCcccccccccccccceec---C--CC-CcccHHHHHHHh--hCCCCCccccc
Q 031971 49 EREEECGICLEICCKIVLP---D--CN-HSMCMRCYRNWR--ARSQSCPFCRD 93 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~---~--Cg-H~fC~~Ci~~~~--~~~~~CP~Cr~ 93 (150)
.+...| +|...... .++ . |. ..||..|+.--. .+...||.|+.
T Consensus 7 ~e~~yC-~C~~~~~g-~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSYG-EMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECCS-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCCC-CeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 455667 89875433 333 3 65 589999986211 13567998864
No 153
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=38.04 E-value=8.3 Score=26.73 Aligned_cols=46 Identities=20% Similarity=0.376 Sum_probs=30.1
Q ss_pred CCccccccccccccc-ceec---CCCCcccHHHHHHH--h---hCCCCCccccccc
Q 031971 49 EREEECGICLEICCK-IVLP---DCNHSMCMRCYRNW--R---ARSQSCPFCRDSL 95 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~-p~~~---~CgH~fC~~Ci~~~--~---~~~~~CP~Cr~~~ 95 (150)
.+...| +|.....+ ...+ .|..+||..|+.-- . .....||.|+..-
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 456778 99876532 2222 67889999998431 1 2467899997643
No 154
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.52 E-value=16 Score=21.52 Aligned_cols=38 Identities=13% Similarity=0.369 Sum_probs=26.8
Q ss_pred cccccccccccc--cceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 51 EEECGICLEICC--KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 51 ~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
...|+.|...+. +.++..-|..||..| ..|-.|+.++.
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYKGTVWHKDC--------FTCSNCKQVIG 54 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECSSCEEETTT--------CCCSSSCCCCT
T ss_pred CCcCccCCcccccCceEEEECcccccccc--------CchhhCCCccC
Confidence 357888888877 444555677777766 67888887774
No 155
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.78 E-value=12 Score=21.96 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=24.1
Q ss_pred cccccccccccc----ceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 52 EECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 52 ~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
..|+.|...+.. .++..-+..||..| ..|..|+.++.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCccc--------CChhhCCCcCC
Confidence 468888877774 44445566666666 56777776663
No 156
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=36.72 E-value=1.2 Score=27.71 Aligned_cols=11 Identities=18% Similarity=0.452 Sum_probs=6.5
Q ss_pred ccccccccccc
Q 031971 52 EECGICLEICC 62 (150)
Q Consensus 52 ~~C~IC~~~~~ 62 (150)
..||.|...+.
T Consensus 3 ~~CP~C~~~l~ 13 (81)
T 2jrp_A 3 ITCPVCHHALE 13 (81)
T ss_dssp CCCSSSCSCCE
T ss_pred CCCCCCCCccc
Confidence 45677765544
No 157
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.51 E-value=10 Score=22.49 Aligned_cols=38 Identities=21% Similarity=0.489 Sum_probs=24.4
Q ss_pred cccccccccccccceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 51 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 51 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
...|+-|...+.+.++..-+..|+..| ..|..|..++.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPILDRILRAMGKAYHPGC--------FTCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTT--------CBCSSSCCBCT
T ss_pred CCccccCCCeecceeEEECCccccHHh--------cCcccCCCccC
Confidence 456777777776555545555666655 56777877664
No 158
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.96 E-value=11 Score=22.44 Aligned_cols=37 Identities=19% Similarity=0.386 Sum_probs=25.8
Q ss_pred ccccccccccccceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 52 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 52 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
..|+-|...+...++..-+..||..| ..|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIEGEVVSALGKTYHPDC--------FVCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTTT--------SSCSSSCCCCC
T ss_pred CcCccccCEeccceEEECCceeCccC--------CccccCCCCCC
Confidence 37888888777555555666666666 66888877764
No 159
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=35.76 E-value=21 Score=20.78 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=20.2
Q ss_pred CCcccccccccccccc-eec----CCCCcccHHHH
Q 031971 49 EREEECGICLEICCKI-VLP----DCNHSMCMRCY 78 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p-~~~----~CgH~fC~~Ci 78 (150)
.....|++|.....+- ..+ .|.-.||..|+
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 4566899999876543 222 67788999997
No 160
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=35.69 E-value=6.7 Score=23.18 Aligned_cols=44 Identities=18% Similarity=0.513 Sum_probs=27.9
Q ss_pred CCcccccccccccccceec---CCCCcccHHHHHHHhh---CCCCCccccc
Q 031971 49 EREEECGICLEICCKIVLP---DCNHSMCMRCYRNWRA---RSQSCPFCRD 93 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~---~~~~CP~Cr~ 93 (150)
.+...| ||........++ .|...|+..|+.--.. ....||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 456678 898765543343 5777888888754221 3467888864
No 161
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.18 E-value=16 Score=21.44 Aligned_cols=37 Identities=16% Similarity=0.365 Sum_probs=24.6
Q ss_pred ccccccccccccceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 52 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 52 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
..|+-|...+....+..-+..|+..| ..|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQGGVTYRDQPWHREC--------LVCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSCCEESSSSEECTTT--------CBCSSSCCBCT
T ss_pred CcCCCCCCEecCcEEEECCchhhhhh--------CCcccCCCcCC
Confidence 46778877776655555566666665 56777877763
No 162
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.72 E-value=10 Score=21.65 Aligned_cols=36 Identities=17% Similarity=0.322 Sum_probs=19.0
Q ss_pred ccccccccccccceecCCCCcccHHHHHHHhhCCCCCccccccc
Q 031971 52 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 95 (150)
Q Consensus 52 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 95 (150)
..|+-|...+....+..-+..||..| ..|..|..++
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L 41 (69)
T 2cur_A 6 SGCVKCNKAITSGGITYQDQPWHADC--------FVCVTCSKKL 41 (69)
T ss_dssp CCCSSSCCCCCTTCEEETTEEECTTT--------TBCTTTCCBC
T ss_pred CCCcccCCEeCcceEEECccccccCc--------CEECCCCCCC
Confidence 45666666555433333444455444 4566666655
No 163
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.25 E-value=12 Score=21.85 Aligned_cols=38 Identities=16% Similarity=0.376 Sum_probs=26.2
Q ss_pred cccccccccccc-cceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 51 EEECGICLEICC-KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 51 ~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
...|+.|.+.+. ...+..-+..||..| ..|..|+.++.
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFC--------LKCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTT--------CBCSSSCCBCC
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCC--------CCCCCCCCccC
Confidence 457888988877 334445566666666 67888888775
No 164
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=33.83 E-value=37 Score=23.10 Aligned_cols=45 Identities=11% Similarity=0.265 Sum_probs=30.7
Q ss_pred CCcccccccccccccceecCCCCcccHHHHHHHhhCCCCCccccccc
Q 031971 49 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 95 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 95 (150)
.+-+.|..|...+.......=|..||..|..+.. ...|..|...+
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~~C~~C~~~I 75 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQLGI 75 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH--SCBCTTTCCBC
T ss_pred cccCccCCCCCcCCCCCcccCCeeeecccccccc--ccccccccccc
Confidence 3568899998888765444557789999976632 34566666655
No 165
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=33.31 E-value=29 Score=22.40 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=20.6
Q ss_pred cccccccccccccceecCCCCcccH
Q 031971 51 EEECGICLEICCKIVLPDCNHSMCM 75 (150)
Q Consensus 51 ~~~C~IC~~~~~~p~~~~CgH~fC~ 75 (150)
...|..|...-...+-+.|||.+|.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCCCCeeeeeecCccccC
Confidence 4579999987666778999999995
No 166
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=32.10 E-value=8.9 Score=28.32 Aligned_cols=42 Identities=19% Similarity=0.404 Sum_probs=24.1
Q ss_pred cccccccccccccee---cCCCCcccHHHHHHHhh----C-CCCCccccc
Q 031971 52 EECGICLEICCKIVL---PDCNHSMCMRCYRNWRA----R-SQSCPFCRD 93 (150)
Q Consensus 52 ~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~----~-~~~CP~Cr~ 93 (150)
..|.+|...-....+ -.|...||..|+.+=+. + ...||.|..
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 357888754222222 26888899999886222 3 467999965
No 167
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=31.44 E-value=8.3 Score=22.88 Aligned_cols=41 Identities=20% Similarity=0.425 Sum_probs=25.9
Q ss_pred cccccccccccceec---CCCCcccHHHHHHHhh----C-CCCCccccc
Q 031971 53 ECGICLEICCKIVLP---DCNHSMCMRCYRNWRA----R-SQSCPFCRD 93 (150)
Q Consensus 53 ~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~----~-~~~CP~Cr~ 93 (150)
.|.+|...-....++ .|...||..|+.+=+. + ...||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 566777543322233 6778999999875222 3 567888864
No 168
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=30.30 E-value=34 Score=21.21 Aligned_cols=27 Identities=15% Similarity=0.325 Sum_probs=20.9
Q ss_pred Cccccccccccccc--ceecCCCCcccHH
Q 031971 50 REEECGICLEICCK--IVLPDCNHSMCMR 76 (150)
Q Consensus 50 ~~~~C~IC~~~~~~--p~~~~CgH~fC~~ 76 (150)
....|..|...+.- +..-.||..||..
T Consensus 24 ~~~rC~~C~kkvgl~~~f~CrCg~~FC~~ 52 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECRCGNNFCAS 52 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECTTCCEECTT
T ss_pred cCccchhhCCeecccCCeEcCCCCEeccc
Confidence 35789999986654 6666899999984
No 169
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.20 E-value=26 Score=20.64 Aligned_cols=37 Identities=22% Similarity=0.395 Sum_probs=24.8
Q ss_pred ccccccccccc--cceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 52 EECGICLEICC--KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 52 ~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
..|+.|...+. ..++..-|..|+..| ..|-.|..++.
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFYEDRHFHEGC--------FRCCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCCSSCCCBTTT--------SBCTTTCCBCS
T ss_pred CcCccCCCccccCcEEEEeCCccccccC--------CeecCCCCccC
Confidence 46888888777 334444566666666 66778877764
No 170
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.17 E-value=16 Score=20.98 Aligned_cols=37 Identities=16% Similarity=0.321 Sum_probs=22.8
Q ss_pred cccccccccccc--ceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 52 EECGICLEICCK--IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 52 ~~C~IC~~~~~~--p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
..|+.|...+.. .++..-|..|+..| ..|-.|..++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETC--------FICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTT--------TCCSSSCCCCC
T ss_pred CCCccCCCcccCCceEEEECcCeecccC--------CcccccCCccC
Confidence 467777777763 34444555666555 55777776664
No 171
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=30.16 E-value=6.7 Score=23.86 Aligned_cols=41 Identities=20% Similarity=0.428 Sum_probs=25.3
Q ss_pred cccccccccccceec---CCCCcccHHHHHHHhh----CC-CCCccccc
Q 031971 53 ECGICLEICCKIVLP---DCNHSMCMRCYRNWRA----RS-QSCPFCRD 93 (150)
Q Consensus 53 ~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~----~~-~~CP~Cr~ 93 (150)
.|.+|...-....++ .|...||..|+.+-+. .. ..||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 566666544333333 6778899999876332 23 67888864
No 172
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=29.91 E-value=7 Score=22.42 Aligned_cols=43 Identities=16% Similarity=0.468 Sum_probs=25.8
Q ss_pred CCcccccccccccccceec---C--CC-CcccHHHHHHHh--hCCCCCccccc
Q 031971 49 EREEECGICLEICCKIVLP---D--CN-HSMCMRCYRNWR--ARSQSCPFCRD 93 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~---~--Cg-H~fC~~Ci~~~~--~~~~~CP~Cr~ 93 (150)
.+...| ||...-.. .++ . |. ..||..|+.--. .+...||.|+.
T Consensus 8 ~e~~~C-~C~~~~~g-~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEECCS-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCcCCC-CEEEeCCCCCCCceEehhcCCCCcCCCCCEECcCccC
Confidence 345667 89875433 344 3 55 579999986211 14567998854
No 173
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.70 E-value=16 Score=21.49 Aligned_cols=37 Identities=22% Similarity=0.378 Sum_probs=23.6
Q ss_pred ccccccccccccceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 52 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 52 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
..|+.|...+....+..-+..|+..| ..|..|+.++.
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 52 (80)
T 1x3h_A 16 PKCGGCNRPVLENYLSAMDTVWHPEC--------FVCGDCFTSFS 52 (80)
T ss_dssp CBCTTTCCBCCSSCEEETTEEECTTT--------CBCSSSCCBSC
T ss_pred CccccCCCeecceeEEECCCeEecCc--------CChhhCCCCCC
Confidence 46777777766554444455555555 66778877764
No 174
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=29.45 E-value=39 Score=20.13 Aligned_cols=45 Identities=16% Similarity=0.292 Sum_probs=29.0
Q ss_pred Ccccccccccccc-cceec---CCCCcccHHHHHHHh-----hCCCCCccccccc
Q 031971 50 REEECGICLEICC-KIVLP---DCNHSMCMRCYRNWR-----ARSQSCPFCRDSL 95 (150)
Q Consensus 50 ~~~~C~IC~~~~~-~p~~~---~CgH~fC~~Ci~~~~-----~~~~~CP~Cr~~~ 95 (150)
+...| +|..... ...++ .|...||..|+.--. .....||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34556 8887663 22222 688899999984311 1457899998754
No 175
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=29.09 E-value=16 Score=21.32 Aligned_cols=42 Identities=12% Similarity=0.070 Sum_probs=24.4
Q ss_pred Ccccccccccccccc-eecCCCCcccH-HHHHHHhhCCCCCccccc
Q 031971 50 REEECGICLEICCKI-VLPDCNHSMCM-RCYRNWRARSQSCPFCRD 93 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p-~~~~CgH~fC~-~Ci~~~~~~~~~CP~Cr~ 93 (150)
+-+.|..|...+... ....=|..||. .|..+. ....|..|..
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~--f~~~C~~C~~ 69 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAM--FGPKGFGRGG 69 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHH--SSCCCSSCCC
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHH--hCccCCCcCC
Confidence 456777777776652 33344566777 476543 3345666653
No 176
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.82 E-value=7.8 Score=23.52 Aligned_cols=41 Identities=20% Similarity=0.425 Sum_probs=26.2
Q ss_pred cccccccccccceec---CCCCcccHHHHHHHhh----C-CCCCccccc
Q 031971 53 ECGICLEICCKIVLP---DCNHSMCMRCYRNWRA----R-SQSCPFCRD 93 (150)
Q Consensus 53 ~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~----~-~~~CP~Cr~ 93 (150)
.|.+|...-....++ .|...||..|+.+-+. + ...||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 678888643322232 6778999999875222 3 467888854
No 177
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=28.54 E-value=26 Score=19.18 Aligned_cols=40 Identities=15% Similarity=0.269 Sum_probs=23.8
Q ss_pred cccccccccccc-eec----CCCCcccHHHHHH----HhhCCCCCcccc
Q 031971 53 ECGICLEICCKI-VLP----DCNHSMCMRCYRN----WRARSQSCPFCR 92 (150)
Q Consensus 53 ~C~IC~~~~~~p-~~~----~CgH~fC~~Ci~~----~~~~~~~CP~Cr 92 (150)
.|.+|.....+. ..+ .|...||..|+.- -......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 467787766432 222 4667888888642 112567788874
No 178
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=28.19 E-value=36 Score=23.53 Aligned_cols=43 Identities=12% Similarity=0.271 Sum_probs=22.9
Q ss_pred ccccccccccccceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 52 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 52 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
+.|..|...+.......=|..||..|..+. ....|..|..++.
T Consensus 88 F~C~~C~~~L~~~~f~~~g~~yC~~~y~~~--f~~kC~~C~~~I~ 130 (182)
T 2jtn_A 88 LKCSDCHVPLAERCFSRGESVYCKDDFFKR--FGTKCAACQLGIP 130 (182)
T ss_dssp TSCTTTCCCCSSCCEEETTEEECHHHHHHT--TSCCCTTTCCCCC
T ss_pred CccCCCCCccCCCceeECCEeeecCccccc--cccccccCCCccC
Confidence 445555544443222223445677775542 2467888877764
No 179
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=27.81 E-value=10 Score=23.83 Aligned_cols=43 Identities=14% Similarity=0.315 Sum_probs=26.3
Q ss_pred CCcccccccccccccceec---CCC---CcccHHHHHHH--hhCCCCCcc-ccc
Q 031971 49 EREEECGICLEICCKIVLP---DCN---HSMCMRCYRNW--RARSQSCPF-CRD 93 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~---~Cg---H~fC~~Ci~~~--~~~~~~CP~-Cr~ 93 (150)
.+...| ||...-... ++ .|. ..||..|+.-- ......||. |+.
T Consensus 24 ~~~~yC-iC~~~~~g~-MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSYGP-MVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCSSS-EECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCCCC-EEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 455677 898754433 33 333 57999997521 114567999 875
No 180
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.61 E-value=81 Score=17.71 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=11.6
Q ss_pred ccccccccccccc-eecCCCCcccHHHHHH
Q 031971 52 EECGICLEICCKI-VLPDCNHSMCMRCYRN 80 (150)
Q Consensus 52 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~ 80 (150)
+.|..|...+... ....=|..||..|..+
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 63 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEGCYVA 63 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHHHHHH
T ss_pred CcccccCCcCCcCcCEeeCCeEECHHHHHH
Confidence 4444444444321 2223334444444443
No 181
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=27.57 E-value=26 Score=22.59 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=21.1
Q ss_pred Ccccccccccccc--cceecCCCCcccHHHHHHHh
Q 031971 50 REEECGICLEICC--KIVLPDCNHSMCMRCYRNWR 82 (150)
Q Consensus 50 ~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~ 82 (150)
+-+.|..|...+. +.....=|..||..|.....
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWT 69 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHH
T ss_pred ccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHh
Confidence 4577788877773 22344456778888876644
No 182
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=27.03 E-value=8.7 Score=22.24 Aligned_cols=43 Identities=19% Similarity=0.456 Sum_probs=26.6
Q ss_pred CCcccccccccccccceec---C--CC-CcccHHHHHHHh--hCCCCCccccc
Q 031971 49 EREEECGICLEICCKIVLP---D--CN-HSMCMRCYRNWR--ARSQSCPFCRD 93 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~---~--Cg-H~fC~~Ci~~~~--~~~~~CP~Cr~ 93 (150)
.+...| +|...-. ..++ . |. ..||..|+.--. .....||.|+.
T Consensus 9 ~e~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 345667 8988543 3344 3 55 789999986311 13567999865
No 183
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=27.02 E-value=10 Score=22.40 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=28.5
Q ss_pred CCcccccccccccccc-eec---CCCCcccHHHHHHHh----hCCCCCcccccc
Q 031971 49 EREEECGICLEICCKI-VLP---DCNHSMCMRCYRNWR----ARSQSCPFCRDS 94 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p-~~~---~CgH~fC~~Ci~~~~----~~~~~CP~Cr~~ 94 (150)
.....| +|.....+. .++ .|...||..|+.--. .....||.|+..
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 456778 798765433 233 577788888875321 235679999753
No 184
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=26.23 E-value=38 Score=20.67 Aligned_cols=45 Identities=20% Similarity=0.434 Sum_probs=31.8
Q ss_pred Ccccccccccccccc-eecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 50 REEECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 50 ~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
+-+.|..|...+... ....=|..||..|..+ .....|..|..++.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~--~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTR--EDSPKCKGCFKAIV 77 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTT--CCCCBCSSSCCBCC
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhh--hcCCccccCCCccc
Confidence 457889998887653 3345577899988543 23578999988875
No 185
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=25.54 E-value=20 Score=20.80 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=25.6
Q ss_pred cccccccccccc-----ceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 52 EECGICLEICCK-----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 52 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
..|+-|...+.. .++..=+..|+..| ..|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 57 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYC--------FHCKKCSVNLA 57 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEETTEEEETTT--------CBCSSSCCBCT
T ss_pred ccCcccCCcccCCCCCceeEEECcceeCccc--------CEehhcCCCCC
Confidence 568888887774 34445566666666 67888888774
No 186
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=25.43 E-value=37 Score=22.07 Aligned_cols=38 Identities=21% Similarity=0.388 Sum_probs=29.0
Q ss_pred cccccccccccccc-eecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 51 EEECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 51 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
...|+-|...+.+. ++..-|..||..| ..|-.|+.++.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccc--------cCcCcCCCccc
Confidence 46899999988876 3556677777777 77889988874
No 187
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=25.33 E-value=85 Score=18.58 Aligned_cols=31 Identities=19% Similarity=0.430 Sum_probs=23.6
Q ss_pred Cccccccccccc-ccc--eecCCCCcccHHHHHH
Q 031971 50 REEECGICLEIC-CKI--VLPDCNHSMCMRCYRN 80 (150)
Q Consensus 50 ~~~~C~IC~~~~-~~p--~~~~CgH~fC~~Ci~~ 80 (150)
.+..|.+|.+.- ..+ .-+.|.-+||..|+..
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 467899998643 333 4578999999999986
No 188
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.16 E-value=38 Score=20.04 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=27.5
Q ss_pred CCccccccccccccc-ceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 49 EREEECGICLEICCK-IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
.....|+-|...+.. ..+..-+..||..| ..|..|+.++.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCCcCcCCeeCCCeEEEECCccccccc--------CCcCcCCCCcC
Confidence 456789999988763 33444566666666 67888888774
No 189
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=25.09 E-value=32 Score=22.12 Aligned_cols=40 Identities=23% Similarity=0.465 Sum_probs=23.6
Q ss_pred cccccccccc------c--ce--ecCCCCcccHHHHHHH-------hhCCCCCcccc
Q 031971 53 ECGICLEICC------K--IV--LPDCNHSMCMRCYRNW-------RARSQSCPFCR 92 (150)
Q Consensus 53 ~C~IC~~~~~------~--p~--~~~CgH~fC~~Ci~~~-------~~~~~~CP~Cr 92 (150)
.|.+|+..-. + .. -..|+..||..|+... ......||.|+
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 5788876431 1 11 1378888888887532 12456677663
No 190
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.77 E-value=34 Score=19.69 Aligned_cols=39 Identities=13% Similarity=0.324 Sum_probs=26.5
Q ss_pred Ccccccccccccc--cceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 50 REEECGICLEICC--KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 50 ~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
....|+-|...+. +.++..-|..|+..| ..|-.|..++.
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 50 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNSNGELYHEQC--------FVCAQCFQQFP 50 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEETTEEECTTT--------CCCTTTCCCCG
T ss_pred CCCCchhcCCccCCCceEEEeCccEecccc--------CeECCCCCCCC
Confidence 4567999998875 334445566666666 66888887775
No 191
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.70 E-value=34 Score=21.66 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=24.5
Q ss_pred CCccccccccccccc---ceecCCCCcccHHHHHHHhh
Q 031971 49 EREEECGICLEICCK---IVLPDCNHSMCMRCYRNWRA 83 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~ 83 (150)
.+-+.|..|...+.+ .....=|..||..|..+...
T Consensus 28 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 28 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG 65 (114)
T ss_dssp TTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHT
T ss_pred HhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhC
Confidence 346889999888864 34445577899999876443
No 192
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=24.41 E-value=3.4 Score=26.51 Aligned_cols=40 Identities=23% Similarity=0.486 Sum_probs=25.7
Q ss_pred ccccccccccccceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 52 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 52 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
..||.|...+.-- =++.+|..|-..+ .....||.|..++.
T Consensus 33 ~~CP~Cq~eL~~~----g~~~hC~~C~~~f-~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQD----NGHARCRSCGEFI-EMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEE----TTEEEETTTCCEE-EEEEECTTTCSBCE
T ss_pred ccCccCCCcceec----CCEEECccccchh-hccccCcchhhHHH
Confidence 7899999776521 1333477774432 23467999988774
No 193
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=24.36 E-value=20 Score=20.28 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=22.1
Q ss_pred cccccccccc--cceecCCCCccc--HHHHHHHhhCCCCCcccccccc
Q 031971 53 ECGICLEICC--KIVLPDCNHSMC--MRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 53 ~C~IC~~~~~--~p~~~~CgH~fC--~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
.|+-|...+. +..+..-|..|+ ..| ..|-.|+.++.
T Consensus 4 ~C~~C~~~I~~~~~~v~a~~~~wH~~~~C--------F~C~~C~~~L~ 43 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYNNFSWHASTEC--------FLCSCCSKCLI 43 (65)
T ss_dssp ECTTTSSEECTTSCEEEETTEEEETTTTT--------SBCTTTCCBCT
T ss_pred CCcCCCCeeccCceEEEECCCccCCCCCC--------EECCCCCCcCC
Confidence 5777777666 334445566666 555 56777776663
No 194
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=23.97 E-value=35 Score=29.54 Aligned_cols=31 Identities=16% Similarity=0.696 Sum_probs=23.9
Q ss_pred ccccccccccccc----------ceecCCCCcccHHHHHHH
Q 031971 51 EEECGICLEICCK----------IVLPDCNHSMCMRCYRNW 81 (150)
Q Consensus 51 ~~~C~IC~~~~~~----------p~~~~CgH~fC~~Ci~~~ 81 (150)
..+||+|.-...+ -..++||-+||..|...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~c~~c~~~~ 53 (776)
T 4gut_A 13 TATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHY 53 (776)
T ss_dssp CCSSCCBSCCCSTTCCTTSCBSCEEEEETTEEEEHHHHHHH
T ss_pred cccccHHHHHHHHHHHhCCCCcceeEeccccchhHHHHHHH
Confidence 4578899876664 246799999999999754
No 195
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=22.54 E-value=21 Score=23.07 Aligned_cols=44 Identities=20% Similarity=0.435 Sum_probs=26.4
Q ss_pred CCcccccccccccccceec---CCCCcccHHHHHHHhh----CCCCCccccccc
Q 031971 49 EREEECGICLEICCKIVLP---DCNHSMCMRCYRNWRA----RSQSCPFCRDSL 95 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~ 95 (150)
..+..|.+|.+. .+-+.= .|...|+..|+. +. +...||.|.-.+
T Consensus 13 ~~~~~C~~C~~~-G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 13 MHEDYCFQCGDG-GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp SSCSSCTTTCCC-SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCCcCCCC-CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 466789999842 111111 366788888876 22 345688775443
No 196
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=22.39 E-value=14 Score=18.02 Aligned_cols=13 Identities=15% Similarity=0.171 Sum_probs=6.9
Q ss_pred ccccccccccccc
Q 031971 52 EECGICLEICCKI 64 (150)
Q Consensus 52 ~~C~IC~~~~~~p 64 (150)
..|++|...+.++
T Consensus 4 ~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 4 FCCPKCQYQAPDM 16 (28)
T ss_dssp EECTTSSCEESSH
T ss_pred ccCccccccCcCh
Confidence 4566665555443
No 197
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=22.08 E-value=8.8 Score=22.49 Aligned_cols=44 Identities=20% Similarity=0.380 Sum_probs=26.6
Q ss_pred CCcccccccccccccceecC-----CCCcccHHHHHHHh---h-----CCCCCccccc
Q 031971 49 EREEECGICLEICCKIVLPD-----CNHSMCMRCYRNWR---A-----RSQSCPFCRD 93 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p~~~~-----CgH~fC~~Ci~~~~---~-----~~~~CP~Cr~ 93 (150)
++...| ||.....+..++. |...||..|+.--. . ....||.||.
T Consensus 8 e~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 8 EAKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp SCEECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 345667 7976655554443 66689999963210 0 1467999974
No 198
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.00 E-value=73 Score=18.74 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=26.6
Q ss_pred CCcccccccccccccc-eecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 49 EREEECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
.....|+-|...+... .+..-+..||..| ..|-.|+..+.
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a~~~~wH~~C--------F~C~~C~~~L~ 53 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCVNGHFFHRSC--------FRCHTCEATLW 53 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCBTTBCCBTTT--------CBCSSSCCBCC
T ss_pred CCCCCCcccCCCcccceEEEECCCeeCCCc--------CEEcCCCCCcC
Confidence 3457899999887543 3334566666666 66778877764
No 199
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.44 E-value=83 Score=18.77 Aligned_cols=39 Identities=21% Similarity=0.515 Sum_probs=23.2
Q ss_pred Cccccccccccccc-ceecCCCCcccHHHHHHHhhCCCCCcccccccc
Q 031971 50 REEECGICLEICCK-IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 96 (150)
Q Consensus 50 ~~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 96 (150)
....|+-|...+.. ..+..-+..||..| ..|-.|..++.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 53 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQQVFHISC--------FRCSYCNNKLS 53 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSSSEEETTT--------CBCTTTCCBCC
T ss_pred CCCcCccCCCccCCceeEEECCCEECCCC--------CeeCCCCCCCC
Confidence 34567777777654 23345555666655 55666766654
No 200
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.37 E-value=57 Score=19.25 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=20.7
Q ss_pred CCcccccccccccccc----eecCCCCcccHH
Q 031971 49 EREEECGICLEICCKI----VLPDCNHSMCMR 76 (150)
Q Consensus 49 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~ 76 (150)
.....|..|...+.-+ ..-.||..||..
T Consensus 13 ~~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~ 44 (67)
T 1x4w_A 13 KSRRRCFQCQTKLELVQQELGSCRCGYVFCML 44 (67)
T ss_dssp SCTTBCSSSCCBCCHHHHHHHCCSSSCCCCTT
T ss_pred ccCCcchhhCCeecccccCceEecCCCEehhc
Confidence 3467899999887755 344799999874
No 201
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=20.00 E-value=13 Score=18.97 Aligned_cols=15 Identities=33% Similarity=0.930 Sum_probs=12.1
Q ss_pred ecCCCCcccHHHHHH
Q 031971 66 LPDCNHSMCMRCYRN 80 (150)
Q Consensus 66 ~~~CgH~fC~~Ci~~ 80 (150)
..+|.|+.|..|--+
T Consensus 9 mascehtmcgycqgp 23 (40)
T 1erd_A 9 MASCEHTMCGYCQGP 23 (40)
T ss_dssp HHHTCGGGGGGSCHH
T ss_pred HHhccccccccccCC
Confidence 457999999988666
Done!