BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>031973
MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE
AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE
ENESDKSKSEVNDEDDEEGSGEVFLQLLTY

High Scoring Gene Products

Symbol, full name Information P value
HMGB4
high mobility group B4 		protein from Arabidopsis thaliana 1.1e-34
HMGB2
high mobility group B2 		protein from Arabidopsis thaliana 2.0e-31
HMGB5
high mobility group B5 		protein from Arabidopsis thaliana 1.6e-22
HMGB3
High mobility group protein B3 		protein from Bos taurus 1.8e-14
HMGB3
High mobility group protein B3 		protein from Gallus gallus 6.2e-14
HMGB6
high-mobility group box 6 		protein from Arabidopsis thaliana 6.2e-14
LOC100517745
Uncharacterized protein 		protein from Sus scrofa 7.9e-14
Hmgb3
high mobility group box 3 		protein from Mus musculus 1.3e-13
Hmgb3
high mobility group box 3 		gene from Rattus norvegicus 1.3e-13
HMGB1
High mobility group protein B1 		protein from Gallus gallus 1.6e-13
LOC532409
Uncharacterized protein 		protein from Bos taurus 4.4e-13
HMGB3
High mobility group protein B3 		protein from Homo sapiens 5.6e-13
hmgb1a
high-mobility group box 1a 		gene_product from Danio rerio 5.6e-13
HMGB3
Uncharacterized protein 		protein from Canis lupus familiaris 7.1e-13
HMGB3
High mobility group protein B3 		protein from Homo sapiens 7.1e-13
HMGB3
High mobility group protein B3 		protein from Homo sapiens 1.9e-12
HMGB1
High mobility group protein B1 		protein from Gallus gallus 2.4e-12
HMG1
High mobility group protein B1 		protein from Gallus gallus 2.4e-12
LOC680968
similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) 		gene from Rattus norvegicus 2.4e-12
LOC681718
similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) 		gene from Rattus norvegicus 2.4e-12
Hmgb1
high mobility group box 1 		gene from Rattus norvegicus 2.4e-12
HMGB1
High mobility group protein B1 		protein from Cricetulus griseus 2.4e-12
HMGB1
High mobility group protein B1 		protein from Canis lupus familiaris 3.1e-12
HMGB1
High mobility group protein B1 		protein from Homo sapiens 3.1e-12
LOC690940
similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) 		gene from Rattus norvegicus 3.1e-12
LOC689398
similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) 		gene from Rattus norvegicus 3.1e-12
HMGB1
High mobility group protein B1 		protein from Bos taurus 3.1e-12
HMGB1
High mobility group protein B1 		protein from Sus scrofa 3.1e-12
HMGB1
High mobility group protein B1 		protein from Sus scrofa 3.9e-12
LOC678705
hypothetical protein LOC678705 		gene from Rattus norvegicus 3.9e-12
E1BMK2
Uncharacterized protein 		protein from Bos taurus 3.9e-12
LOC691220
hypothetical protein LOC691220 		gene from Rattus norvegicus 8.2e-12
LOC679451
similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) 		gene from Rattus norvegicus 8.2e-12
Hmg1l1
high-mobility group (nonhistone chromosomal) protein 1-like 1 		gene from Rattus norvegicus 8.2e-12
RGD1563668
similar to High mobility group protein 1 (HMG-1) 		gene from Rattus norvegicus 1.3e-11
Hmgb1-ps3
high mobility group box 1, pseudogene 3 		gene from Rattus norvegicus 2.2e-11
LOC679344
similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) 		gene from Rattus norvegicus 2.8e-11
LOC685520
similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) 		gene from Rattus norvegicus 2.8e-11
hmgb3b
high-mobility group box 3b 		gene_product from Danio rerio 3.5e-11
HMGB1P1
Putative high mobility group protein B1-like 1 		protein from Homo sapiens 4.5e-11
P0C6E5
Putative high mobility group protein B3-like protein 		protein from Homo sapiens 1.2e-10
F1M607
Uncharacterized protein 		protein from Rattus norvegicus 1.2e-10
RGD1559962
similar to High mobility group protein 2 (HMG-2) 		gene from Rattus norvegicus 2.0e-10
HMGB2
High mobility group protein B2 		protein from Gallus gallus 2.5e-10
LOC690521
similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) 		gene from Rattus norvegicus 2.8e-10
HMGB2
Uncharacterized protein 		protein from Canis lupus familiaris 3.2e-10
RGD1564519
similar to High mobility group protein 2 (HMG-2) 		gene from Rattus norvegicus 4.1e-10
Hmgb2
high mobility group box 2 		gene from Rattus norvegicus 4.1e-10
HMGB2
High mobility group protein B2 		protein from Bos taurus 4.1e-10
HMGB2
High mobility group protein B2 		protein from Homo sapiens 4.1e-10
HMGB2
High mobility group protein B2 		protein from Sus scrofa 4.1e-10
RGD1561694
similar to High mobility group protein 2 (HMG-2) 		gene from Rattus norvegicus 4.1e-10
LOC618297
Uncharacterized protein 		protein from Bos taurus 4.1e-10
Hmgb2
high mobility group box 2 		protein from Mus musculus 1.1e-09
HMGB2
High mobility group protein B2 		protein from Gallus gallus 1.1e-09
ssrp1
FACT complex subunit SSRP1 		protein from Xenopus laevis 2.9e-09
LOC685091
similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) 		gene from Rattus norvegicus 4.7e-09
E1BIF8
Uncharacterized protein 		protein from Bos taurus 7.6e-09
Hmg1l1
Protein Hmg1l1 		protein from Rattus norvegicus 7.6e-09
RGD1560584
similar to High mobility group protein 1 (HMG-1) 		gene from Rattus norvegicus 7.6e-09
F1N1P2
Uncharacterized protein 		protein from Bos taurus 9.7e-09
PFL0145c
high mobility group protein 		gene from Plasmodium falciparum 1.2e-08
HMGB1
High mobility group protein 		protein from Plasmodium falciparum 3D7 1.2e-08
SSRP1
FACT complex subunit SSRP1 		protein from Gallus gallus 1.3e-08
SSRP1
FACT complex subunit SSRP1 		protein from Gallus gallus 1.3e-08
HMGB3
High mobility group protein B3 		protein from Homo sapiens 2.0e-08
3xHMG-box1
3xHigh Mobility Group-box1 		protein from Arabidopsis thaliana 2.2e-08
3xHMG-box2
3xHigh Mobility Group-box2 		protein from Arabidopsis thaliana 3.0e-08
HMGB1
High mobility group protein B1 		protein from Canis lupus familiaris 5.3e-08
HMGB1
High mobility group protein B1 		protein from Homo sapiens 5.3e-08
D4A535
Uncharacterized protein 		protein from Rattus norvegicus 5.6e-08
HmgZ
HMG protein Z 		protein from Drosophila melanogaster 8.7e-08
F1LVZ2
Uncharacterized protein 		protein from Rattus norvegicus 8.7e-08
F1M4J9
Uncharacterized protein 		protein from Rattus norvegicus 8.7e-08
ABF2
Mitochondrial DNA-binding protein 		gene from Saccharomyces cerevisiae 8.7e-08
F1LY72
Uncharacterized protein 		protein from Rattus norvegicus 9.7e-08
ssrp1b
structure specific recognition protein 1b 		gene_product from Danio rerio 2.0e-07
hmg-4 gene from Caenorhabditis elegans 2.5e-07
HmgD
High mobility group protein D 		protein from Drosophila melanogaster 2.9e-07
AT5G23405 protein from Arabidopsis thaliana 3.8e-07
ssrp1a
structure specific recognition protein 1a 		gene_product from Danio rerio 4.1e-07
Sox9
Transcription factor SOX-9 		protein from Gallus gallus 4.1e-07
SOX9
Transcription factor SOX-9 		protein from Gallus gallus 4.1e-07
SSRP1
FACT complex subunit SSRP1 		protein from Homo sapiens 4.1e-07
SOX9
Transcription factor SOX-9 		protein from Gallus gallus 4.2e-07
sox9-a
Transcription factor Sox-9-A 		protein from Xenopus laevis 4.8e-07
SOX11
Transcription factor SOX-11 		protein from Gallus gallus 5.3e-07
HMG
high mobility group 		protein from Arabidopsis thaliana 6.0e-07
hmgb1b
high-mobility group box 1b 		gene_product from Danio rerio 6.1e-07
NHP6A gene_product from Candida albicans 6.1e-07
MAL8P1.72
high mobility group protein, putative 		gene from Plasmodium falciparum 6.1e-07
HMGB2
High mobility group protein B2 		protein from Homo sapiens 6.1e-07
PfHMGB2
High mobility group protein 		protein from Plasmodium falciparum 3D7 6.1e-07
NHP6
Non-histone chromosomal protein 6 		protein from Candida albicans SC5314 6.1e-07
sox11-b
Transcription factor Sox-11-B 		protein from Xenopus laevis 6.8e-07
HMGB4
High mobility group protein B4 		protein from Bos taurus 7.2e-07
Sox9
SRY (sex determining region Y)-box 9 		gene from Rattus norvegicus 7.8e-07

The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031973
        (150 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2053893 - symbol:HMGB4 "high mobility group B4...   376  1.1e-34   1
TAIR|locus:505006135 - symbol:HMGB2 "high mobility group ...   345  2.0e-31   1
TAIR|locus:2128003 - symbol:HMGB5 "high mobility group B5...   261  1.6e-22   1
UNIPROTKB|Q32L31 - symbol:HMGB3 "High mobility group prot...   185  1.8e-14   1
UNIPROTKB|P40618 - symbol:HMGB3 "High mobility group prot...   180  6.2e-14   1
TAIR|locus:2154433 - symbol:HMGB6 "high-mobility group bo...   180  6.2e-14   1
UNIPROTKB|F1RQ19 - symbol:LOC100517745 "Uncharacterized p...   179  7.9e-14   1
MGI|MGI:1098219 - symbol:Hmgb3 "high mobility group box 3...   177  1.3e-13   1
RGD|1564407 - symbol:Hmgb3 "high mobility group box 3" sp...   177  1.3e-13   1
UNIPROTKB|P36194 - symbol:HMGB1 "High mobility group prot...   176  1.6e-13   1
UNIPROTKB|E1BIU3 - symbol:LOC532409 "Uncharacterized prot...   172  4.4e-13   1
UNIPROTKB|O15347 - symbol:HMGB3 "High mobility group prot...   171  5.6e-13   1
ZFIN|ZDB-GENE-030131-341 - symbol:hmgb1a "high-mobility g...   171  5.6e-13   1
UNIPROTKB|J9NVS3 - symbol:HMGB3 "Uncharacterized protein"...   170  7.1e-13   1
UNIPROTKB|E7EQU1 - symbol:HMGB3 "High mobility group prot...   170  7.1e-13   1
UNIPROTKB|E7ES08 - symbol:HMGB3 "High mobility group prot...   166  1.9e-12   1
UNIPROTKB|F1N927 - symbol:HMGB1 "High mobility group prot...   165  2.4e-12   1
UNIPROTKB|Q9YH06 - symbol:HMG1 "High mobility group 1 pro...   165  2.4e-12   1
RGD|1585821 - symbol:LOC680968 "similar to High mobility ...   165  2.4e-12   1
RGD|1591683 - symbol:LOC681718 "similar to High mobility ...   165  2.4e-12   1
RGD|2802 - symbol:Hmgb1 "high mobility group box 1" speci...   165  2.4e-12   1
UNIPROTKB|P07156 - symbol:HMGB1 "High mobility group prot...   165  2.4e-12   1
UNIPROTKB|Q6YKA4 - symbol:HMGB1 "High mobility group prot...   164  3.1e-12   1
UNIPROTKB|P09429 - symbol:HMGB1 "High mobility group prot...   164  3.1e-12   1
RGD|1589841 - symbol:LOC690940 "similar to High mobility ...   164  3.1e-12   1
RGD|1593466 - symbol:LOC689398 "similar to High mobility ...   164  3.1e-12   1
UNIPROTKB|P10103 - symbol:HMGB1 "High mobility group prot...   164  3.1e-12   1
UNIPROTKB|F2Z594 - symbol:HMGB1 "High mobility group prot...   164  3.1e-12   1
UNIPROTKB|P12682 - symbol:HMGB1 "High mobility group prot...   163  3.9e-12   1
RGD|1596979 - symbol:LOC678705 "hypothetical protein LOC6...   163  3.9e-12   1
UNIPROTKB|E1BMK2 - symbol:E1BMK2 "Uncharacterized protein...   163  3.9e-12   1
RGD|1586285 - symbol:LOC691220 "hypothetical protein LOC6...   160  8.2e-12   1
RGD|1588313 - symbol:LOC679451 "similar to High mobility ...   160  8.2e-12   1
RGD|1587112 - symbol:Hmg1l1 "high-mobility group (nonhist...   160  8.2e-12   1
RGD|1563668 - symbol:RGD1563668 "similar to High mobility...   158  1.3e-11   1
RGD|1588759 - symbol:Hmgb1-ps3 "high mobility group box 1...   156  2.2e-11   1
RGD|1589528 - symbol:LOC679344 "similar to High mobility ...   155  2.8e-11   1
RGD|1592627 - symbol:LOC685520 "similar to High mobility ...   155  2.8e-11   1
ZFIN|ZDB-GENE-050417-290 - symbol:hmgb3b "high-mobility g...   154  3.5e-11   1
UNIPROTKB|B2RPK0 - symbol:HMGB1P1 "Putative high mobility...   153  4.5e-11   1
UNIPROTKB|P0C6E5 - symbol:P0C6E5 "Putative high mobility ...   149  1.2e-10   1
UNIPROTKB|F1M607 - symbol:F1M607 "Uncharacterized protein...   149  1.2e-10   1
RGD|1559962 - symbol:RGD1559962 "similar to High mobility...   147  2.0e-10   1
UNIPROTKB|F1NPU8 - symbol:HMGB2 "High mobility group prot...   146  2.5e-10   1
RGD|1594733 - symbol:LOC690521 "similar to High mobility ...   132  2.8e-10   2
UNIPROTKB|E2QY30 - symbol:HMGB2 "Uncharacterized protein"...   145  3.2e-10   1
RGD|1564519 - symbol:RGD1564519 "similar to High mobility...   144  4.1e-10   1
RGD|69291 - symbol:Hmgb2 "high mobility group box 2" spec...   144  4.1e-10   1
UNIPROTKB|P40673 - symbol:HMGB2 "High mobility group prot...   144  4.1e-10   1
UNIPROTKB|P26583 - symbol:HMGB2 "High mobility group prot...   144  4.1e-10   1
UNIPROTKB|P17741 - symbol:HMGB2 "High mobility group prot...   144  4.1e-10   1
RGD|1561694 - symbol:RGD1561694 "similar to High mobility...   144  4.1e-10   1
UNIPROTKB|F1MF42 - symbol:LOC618297 "Uncharacterized prot...   144  4.1e-10   1
MGI|MGI:96157 - symbol:Hmgb2 "high mobility group box 2" ...   140  1.1e-09   1
UNIPROTKB|P26584 - symbol:HMGB2 "High mobility group prot...   140  1.1e-09   1
UNIPROTKB|Q9W602 - symbol:ssrp1 "FACT complex subunit SSR...   147  2.9e-09   1
RGD|1583212 - symbol:LOC685091 "similar to High mobility ...   134  4.7e-09   1
UNIPROTKB|E1BIF8 - symbol:E1BIF8 "Uncharacterized protein...   132  7.6e-09   1
UNIPROTKB|D4A9T3 - symbol:D4A9T3 "Uncharacterized protein...   132  7.6e-09   1
RGD|1560584 - symbol:RGD1560584 "similar to High mobility...   132  7.6e-09   1
UNIPROTKB|F1N1P2 - symbol:F1N1P2 "Uncharacterized protein...   131  9.7e-09   1
GENEDB_PFALCIPARUM|PFL0145c - symbol:PFL0145c "high mobil...   130  1.2e-08   1
UNIPROTKB|Q8I616 - symbol:HMGB1 "High mobility group prot...   130  1.2e-08   1
UNIPROTKB|B6ZLK1 - symbol:SSRP1 "Structure-specific recog...   141  1.3e-08   1
UNIPROTKB|Q04678 - symbol:SSRP1 "FACT complex subunit SSR...   141  1.3e-08   1
UNIPROTKB|E9PES6 - symbol:HMGB3 "High mobility group prot...   128  2.0e-08   1
TAIR|locus:2136103 - symbol:3xHMG-box1 "3xHigh Mobility G...   136  2.2e-08   1
TAIR|locus:2128504 - symbol:3xHMG-box2 "3xHigh Mobility G...   135  3.0e-08   1
UNIPROTKB|J9P699 - symbol:HMGB1 "High mobility group prot...   124  5.3e-08   1
UNIPROTKB|Q5T7C4 - symbol:HMGB1 "High mobility group prot...   124  5.3e-08   1
UNIPROTKB|D4A535 - symbol:D4A535 "Uncharacterized protein...   124  5.6e-08   1
FB|FBgn0010228 - symbol:HmgZ "HMG protein Z" species:7227...   122  8.7e-08   1
UNIPROTKB|F1LVZ2 - symbol:F1LVZ2 "Uncharacterized protein...   122  8.7e-08   1
UNIPROTKB|F1M4J9 - symbol:F1M4J9 "Uncharacterized protein...   122  8.7e-08   1
SGD|S000004676 - symbol:ABF2 "Mitochondrial DNA-binding p...   122  8.7e-08   1
UNIPROTKB|F1LY72 - symbol:F1LY72 "Uncharacterized protein...   122  9.7e-08   1
UNIPROTKB|F1LZG8 - symbol:F1LZG8 "Uncharacterized protein...   122  9.7e-08   1
ZFIN|ZDB-GENE-041008-209 - symbol:ssrp1b "structure speci...   130  2.0e-07   1
WB|WBGene00001974 - symbol:hmg-4 species:6239 "Caenorhabd...   129  2.5e-07   1
FB|FBgn0004362 - symbol:HmgD "High mobility group protein...   117  2.9e-07   1
POMBASE|SPAC57A10.09c - symbol:nhp6 "High-mobility group ...   117  2.9e-07   1
TAIR|locus:505006631 - symbol:AT5G23405 "AT5G23405" speci...   116  3.8e-07   1
ZFIN|ZDB-GENE-031118-9 - symbol:ssrp1a "structure specifi...   127  4.1e-07   1
UNIPROTKB|O73668 - symbol:Sox9 "SOX9" species:9031 "Gallu...   113  4.1e-07   2
UNIPROTKB|P48434 - symbol:SOX9 "Transcription factor SOX-...   113  4.1e-07   2
UNIPROTKB|Q08945 - symbol:SSRP1 "FACT complex subunit SSR...   127  4.1e-07   1
UNIPROTKB|F1P307 - symbol:SOX9 "Transcription factor SOX-...   113  4.2e-07   2
UNIPROTKB|B7ZR65 - symbol:sox9-a "Transcription factor So...   112  4.8e-07   2
UNIPROTKB|F1NSW6 - symbol:SOX11 "Transcription factor SOX...    98  5.3e-07   2
TAIR|locus:2098413 - symbol:HMG "high mobility group" spe...   125  6.0e-07   1
ZFIN|ZDB-GENE-030131-8480 - symbol:hmgb1b "high-mobility ...   114  6.1e-07   1
CGD|CAF0007020 - symbol:NHP6A species:5476 "Candida albic...   114  6.1e-07   1
GENEDB_PFALCIPARUM|MAL8P1.72 - symbol:MAL8P1.72 "high mob...   114  6.1e-07   1
UNIPROTKB|D6R9A6 - symbol:HMGB2 "High mobility group prot...   114  6.1e-07   1
UNIPROTKB|Q8IB14 - symbol:PfHMGB2 "High mobility group pr...   114  6.1e-07   1
UNIPROTKB|Q9UVL1 - symbol:NHP6 "Non-histone chromosomal p...   114  6.1e-07   1
UNIPROTKB|P40650 - symbol:sox11-b "Transcription factor S...    99  6.8e-07   2
UNIPROTKB|Q32L34 - symbol:HMGB4 "High mobility group prot...   114  7.2e-07   1
RGD|620474 - symbol:Sox9 "SRY-box containing gene 9" spec...   113  7.8e-07   1
UNIPROTKB|F1M1H9 - symbol:F1M1H9 "Uncharacterized protein...   113  7.8e-07   1

WARNING:  Descriptions of 181 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:2053893 [details] [associations]
            symbol:HMGB4 "high mobility group B4" species:3702
            "Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
            [GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
            "chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
            "structural constituent of chromatin" evidence=TAS] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0006084 "acetyl-CoA metabolic
            process" evidence=RCA] [GO:0006342 "chromatin silencing"
            evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
            [GO:0008283 "cell proliferation" evidence=RCA] [GO:0016572 "histone
            phosphorylation" evidence=RCA] [GO:0051567 "histone H3-K9
            methylation" evidence=RCA] [GO:0003677 "DNA binding"
            evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005829
            GO:GO:0005634 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0003677 GO:GO:0000785 GO:GO:0003700 GO:GO:0003682
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0006333 EMBL:AC007584 HOGENOM:HOG000197860 GO:GO:0030527
            eggNOG:NOG320947 EMBL:Y14074 EMBL:F20020 EMBL:AF370150
            EMBL:AF370562 EMBL:AY150467 EMBL:AK317044 EMBL:AY086336
            IPI:IPI00516334 IPI:IPI00656969 PIR:F84553 PIR:T51596
            RefSeq:NP_001031364.2 RefSeq:NP_001077909.1 RefSeq:NP_179347.1
            UniGene:At.481 HSSP:P11632 ProteinModelPortal:Q42344 SMR:Q42344
            STRING:Q42344 PaxDb:Q42344 PRIDE:Q42344 EnsemblPlants:AT2G17560.1
            EnsemblPlants:AT2G17560.2 GeneID:816263 KEGG:ath:AT2G17560
            TAIR:At2g17560 InParanoid:Q42344 OMA:LANPNNK PhylomeDB:Q42344
            ProtClustDB:CLSN2683898 Genevestigator:Q42344 Uniprot:Q42344
        Length = 138

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 76/138 (55%), Positives = 102/138 (73%)

Query:     1 MKGGRSKADAVGTDSKLKSKGARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKE 60
             MKGG SKA+A  TD +LK++G +AGK+T                SAFFVF+E+FRK+F  
Sbjct:     1 MKGGESKAEATSTDQRLKTRGRKAGKKTKKDPNQPKRPP-----SAFFVFLEDFRKEFNL 55

Query:    61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
             A+PNNKSVATVGKAAG +WK+M++++KAP+V +AE RK++Y KN+Q YN +LA G N  E
Sbjct:    56 ANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTNR-E 114

Query:   121 ENESDKSKSEVNDEDDEE 138
             E++SDKSKSEV++   EE
Sbjct:   115 EDDSDKSKSEVDEAVSEE 132


>TAIR|locus:505006135 [details] [associations]
            symbol:HMGB2 "high mobility group B2" species:3702
            "Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
            [GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
            "chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
            "structural constituent of chromatin" evidence=TAS] [GO:0006096
            "glycolysis" evidence=RCA] [GO:0006833 "water transport"
            evidence=RCA] [GO:0006972 "hyperosmotic response" evidence=RCA]
            [GO:0007030 "Golgi organization" evidence=RCA] [GO:0009266
            "response to temperature stimulus" evidence=RCA] [GO:0009651
            "response to salt stress" evidence=RCA] [GO:0046686 "response to
            cadmium ion" evidence=RCA] [GO:0003677 "DNA binding"
            evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0003677
            GO:GO:0000785 EMBL:AC069251 GO:GO:0003700 GO:GO:0003682
            eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0006333 HSSP:P07155 EMBL:Y14072 EMBL:AF370248
            EMBL:AY063064 EMBL:AK118543 EMBL:AB493468 EMBL:AY084731
            IPI:IPI00532636 IPI:IPI00657279 IPI:IPI00846437 PIR:F86339
            PIR:T51597 RefSeq:NP_001031074.1 RefSeq:NP_001077569.1
            RefSeq:NP_564123.1 UniGene:At.21298 ProteinModelPortal:O49596
            SMR:O49596 STRING:O49596 PaxDb:O49596 PRIDE:O49596
            EnsemblPlants:AT1G20693.1 GeneID:838658 KEGG:ath:AT1G20693
            TAIR:At1g20693 HOGENOM:HOG000197860 InParanoid:O49596 OMA:YVAKANK
            PhylomeDB:O49596 ProtClustDB:CLSN2687884 Genevestigator:O49596
            GO:GO:0030527 Uniprot:O49596
        Length = 144

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 74/143 (51%), Positives = 95/143 (66%)

Query:     1 MKGGRSKADAVGTDSKLKSKGARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKE 60
             MKG +SK +   +   +  K A+   R                 SAFFVFME+FR+ FK+
Sbjct:     1 MKGAKSKTETRSSKLSVTKKPAKGAGR--GKAAAKDPNKPKRPASAFFVFMEDFRETFKK 58

Query:    61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
              +P NKSVATVGKAAG+KWKS+S+ EKAP+V +AEKRK +Y KN++ YNK+L +G    E
Sbjct:    59 ENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--E 116

Query:   121 ENESDKSKSEVNDEDD-EEGSGE 142
             + ESDKS SEVNDEDD E+GS E
Sbjct:   117 DEESDKSVSEVNDEDDAEDGSEE 139


>TAIR|locus:2128003 [details] [associations]
            symbol:HMGB5 "high mobility group B5" species:3702
            "Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
            [GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
            "chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
            "structural constituent of chromatin" evidence=TAS] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0003677 "DNA binding"
            evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
            GO:GO:0000785 GO:GO:0003700 GO:GO:0003682 eggNOG:COG5648
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0006333 EMBL:AL161587 EMBL:AL031135 HOGENOM:HOG000197860
            GO:GO:0030527 HSSP:P11632 EMBL:Y14075 EMBL:AK317173 EMBL:BT025597
            EMBL:AY085615 IPI:IPI00535971 PIR:T04662 RefSeq:NP_195282.1
            UniGene:At.482 ProteinModelPortal:O49597 SMR:O49597 STRING:O49597
            PaxDb:O49597 PRIDE:O49597 EnsemblPlants:AT4G35570.1 GeneID:829709
            KEGG:ath:AT4G35570 TAIR:At4g35570 InParanoid:O49597 OMA:YNMELAN
            PhylomeDB:O49597 ProtClustDB:CLSN2916185 Genevestigator:O49597
            Uniprot:O49597
        Length = 125

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 50/130 (38%), Positives = 84/130 (64%)

Query:     1 MKGGRSKADAVGTDSKLKSKGARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKE 60
             MK  +++ ++  TD +LK +G + GK+T                S FFVF+++FRK+F  
Sbjct:     1 MKDNQTEVESRSTDDRLKVRGNKVGKKTKDPNRPKKPP------SPFFVFLDDFRKEFNL 54

Query:    61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
             A+P+NKSV  VG+AAG+KWK+M+E+E+APFV +++ +K++Y   MQ YN +LA+G     
Sbjct:    55 ANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQSKKTEYAVTMQQYNMELANGNKTTG 114

Query:   121 ENESDKSKSE 130
             ++E  +  ++
Sbjct:   115 DDEKQEKAAD 124


>UNIPROTKB|Q32L31 [details] [associations]
            symbol:HMGB3 "High mobility group protein B3" species:9913
            "Bos taurus" [GO:0003690 "double-stranded DNA binding"
            evidence=IDA] [GO:0008301 "DNA binding, bending" evidence=IDA]
            [GO:0006310 "DNA recombination" evidence=IDA] [GO:0005694
            "chromosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005694 GO:GO:0008301 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006310
            GO:GO:0003690 Pfam:PF09011 HSSP:P48431 HOGENOM:HOG000197861
            GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2
            eggNOG:NOG320947 EMBL:BC109793 IPI:IPI00883385
            RefSeq:NP_001069753.2 RefSeq:NP_001106728.1 UniGene:Bt.62966
            ProteinModelPortal:Q32L31 SMR:Q32L31 Ensembl:ENSBTAT00000005793
            Ensembl:ENSBTAT00000006785 GeneID:613729 KEGG:bta:613729 CTD:3149
            InParanoid:Q32L31 KO:K11296 OMA:DNEKQPY NextBio:20898733
            ArrayExpress:Q32L31 Uniprot:Q32L31
        Length = 200

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 49/139 (35%), Positives = 70/139 (50%)

Query:     6 SKADAVGTDSKLKSKG-ARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPN 64
             +KAD V  D ++K  G A+ GK+                 S FF+F  EFR + K A+P 
Sbjct:    64 AKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPP------SGFFLFCSEFRPKIKSANPG 117

Query:    65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY-NKQLADGVNAAEENE 123
               S+  V K  GE W ++S+ EK P++ +A K K  Y K++ DY +K   DG   A +  
Sbjct:   118 I-SIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADYKSKGKFDGAKGAAKVA 176

Query:   124 SDKSKSEVNDEDDEEGSGE 142
               + K E  DE+DEE   E
Sbjct:   177 --RKKVEEEDEEDEEEEEE 193

 Score = 106 (42.4 bits), Expect = 7.3e-06, P = 7.3e-06
 Identities = 23/65 (35%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             SA+  F++  R++ K+ +P    + A   K   E+WK+MS  EK+ F E A+  K  Y++
Sbjct:    14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73

Query:   104 NMQDY 108
              M+DY
Sbjct:    74 EMKDY 78


>UNIPROTKB|P40618 [details] [associations]
            symbol:HMGB3 "High mobility group protein B3" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
            HOVERGEN:HBG009000 UniGene:Gga.4513 CTD:3149 KO:K11296 EMBL:X63463
            IPI:IPI00580706 PIR:S22359 RefSeq:NP_990626.2
            ProteinModelPortal:P40618 SMR:P40618 STRING:P40618 GeneID:396232
            KEGG:gga:396232 NextBio:20816284 Uniprot:P40618
        Length = 202

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 49/139 (35%), Positives = 69/139 (49%)

Query:     6 SKADAVGTDSKLKSKG-ARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPN 64
             +KAD V  D ++K  G A+ GK+                 SAFF+F  EFR + K  +P 
Sbjct:    64 AKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPP------SAFFLFCSEFRPKIKSTNPG 117

Query:    65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY-NKQLADGVNAAEENE 123
               S+  V K  GE W ++S+ EK P+  +A K K  Y K++ DY +K   DG   A    
Sbjct:   118 I-SIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADYKSKGKFDGAKGAATKA 176

Query:   124 SDKSKSEVNDEDDEEGSGE 142
             + K K E  DE++EE   E
Sbjct:   177 ARK-KVEEEDEEEEEDEEE 194

 Score = 111 (44.1 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 24/65 (36%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             SA+  F++  R++ K+ +P    + A   K   E+WK+MS  EKA F E A+  K  Y++
Sbjct:    14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDR 73

Query:   104 NMQDY 108
              M+DY
Sbjct:    74 EMKDY 78


>TAIR|locus:2154433 [details] [associations]
            symbol:HMGB6 "high-mobility group box 6" species:3702
            "Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=IDA]
            [GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            HSSP:P07155 EMBL:AB018110 HOGENOM:HOG000242532 EMBL:AK118688
            EMBL:AY086023 IPI:IPI00542717 RefSeq:NP_568431.1 UniGene:At.31011
            ProteinModelPortal:Q8LDF9 SMR:Q8LDF9 STRING:Q8LDF9 PaxDb:Q8LDF9
            PRIDE:Q8LDF9 EnsemblPlants:AT5G23420.1 GeneID:832408
            KEGG:ath:AT5G23420 TAIR:At5g23420 eggNOG:NOG297541
            InParanoid:Q8LDF9 OMA:AFFLFMD PhylomeDB:Q8LDF9
            ProtClustDB:CLSN2689854 Genevestigator:Q8LDF9 Uniprot:Q8LDF9
        Length = 241

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 34/99 (34%), Positives = 59/99 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AFF+FM +FRK FK  H N        K  GEKWKS++E+EK  ++++A + K++YNK+
Sbjct:   120 TAFFIFMSDFRKTFKSEH-NGSLAKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKS 178

Query:   105 MQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEGSGEV 143
             ++  +    +     + ++ D ++ +  D+DDE    EV
Sbjct:   179 LESNDADEEEEDEEKQSDDVDDAEEKQVDDDDEVEEKEV 217


>UNIPROTKB|F1RQ19 [details] [associations]
            symbol:LOC100517745 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 GeneTree:ENSGT00560000076717 KO:K11296 OMA:DNEKQPY
            EMBL:CU929821 RefSeq:XP_003135516.1 UniGene:Ssc.27311
            Ensembl:ENSSSCT00000013934 GeneID:100517745 KEGG:ssc:100517745
            Uniprot:F1RQ19
        Length = 202

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 45/139 (32%), Positives = 68/139 (48%)

Query:     6 SKADAVGTDSKLKSKG-ARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPN 64
             +KAD V  D ++K  G A+ GK+                 S FF+F  EFR + K  +P 
Sbjct:    64 AKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPP------SGFFLFCSEFRPKIKSTNPG 117

Query:    65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY-NKQLADGVNAAEENE 123
               S+  V K  GE W ++S+ EK P++ +A K K  Y K++ DY +K   DG     +  
Sbjct:   118 I-SIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVA 176

Query:   124 SDKSKSEVNDEDDEEGSGE 142
               K + +  DEDD++   E
Sbjct:   177 RKKVEEDDEDEDDDDDDEE 195

 Score = 106 (42.4 bits), Expect = 7.5e-06, P = 7.5e-06
 Identities = 23/65 (35%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             SA+  F++  R++ K+ +P    + A   K   E+WK+MS  EK+ F E A+  K  Y++
Sbjct:    14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73

Query:   104 NMQDY 108
              M+DY
Sbjct:    74 EMKDY 78


>MGI|MGI:1098219 [details] [associations]
            symbol:Hmgb3 "high mobility group box 3" species:10090 "Mus
            musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005694 "chromosome" evidence=IEA]
            [GO:0045578 "negative regulation of B cell differentiation"
            evidence=IDA] [GO:0045638 "negative regulation of myeloid cell
            differentiation" evidence=IDA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 MGI:MGI:1098219 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0045638
            Pfam:PF09011 GO:GO:0045578 HOGENOM:HOG000197861 HOVERGEN:HBG009000
            OrthoDB:EOG4TTGK2 eggNOG:NOG320947 CTD:3149 KO:K11296 EMBL:AF022465
            EMBL:BC011276 EMBL:BC083352 IPI:IPI00228879 RefSeq:NP_032279.1
            UniGene:Mm.336087 ProteinModelPortal:O54879 SMR:O54879
            STRING:O54879 PhosphoSite:O54879 PaxDb:O54879 PRIDE:O54879
            Ensembl:ENSMUST00000015361 Ensembl:ENSMUST00000072699
            Ensembl:ENSMUST00000088874 Ensembl:ENSMUST00000114582 GeneID:15354
            KEGG:mmu:15354 InParanoid:O54879 NextBio:287964 Bgee:O54879
            CleanEx:MM_HMGB3 Genevestigator:O54879
            GermOnline:ENSMUSG00000015217 Uniprot:O54879
        Length = 200

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 46/139 (33%), Positives = 69/139 (49%)

Query:     6 SKADAVGTDSKLKSKG-ARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPN 64
             +KAD V  D ++K  G A+ GK+                 S FF+F  EFR + K  +P 
Sbjct:    64 AKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPP------SGFFLFCSEFRPKIKSTNPG 117

Query:    65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY-NKQLADGVNAAEENE 123
               S+  V K  GE W ++S++EK P+V +A K K  Y K++ DY +K   DG     +  
Sbjct:   118 I-SIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVA 176

Query:   124 SDKSKSEVNDEDDEEGSGE 142
               K + E  +E++EE   E
Sbjct:   177 RKKVEEEEEEEEEEEEEEE 195

 Score = 108 (43.1 bits), Expect = 4.2e-06, P = 4.2e-06
 Identities = 23/65 (35%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             SA+  F++  R++ K+ +P    + A   K   E+WK+MS  EK+ F E A+  K  Y++
Sbjct:    14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 73

Query:   104 NMQDY 108
              M+DY
Sbjct:    74 EMKDY 78


>RGD|1564407 [details] [associations]
            symbol:Hmgb3 "high mobility group box 3" species:10116 "Rattus
            norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA;ISO] [GO:0045578 "negative regulation of B
            cell differentiation" evidence=ISO] [GO:0045638 "negative
            regulation of myeloid cell differentiation" evidence=ISO]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            RGD:1564407 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 HOGENOM:HOG000197861 GeneTree:ENSGT00560000076717
            HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2 CTD:3149 KO:K11296 OMA:DNEKQPY
            EMBL:BC158739 EMBL:CH474187 IPI:IPI00955625 RefSeq:NP_001166812.1
            RefSeq:XP_003751731.1 UniGene:Rn.203482 SMR:B0BN99 STRING:B0BN99
            Ensembl:ENSRNOT00000015044 GeneID:100912369 GeneID:305373
            KEGG:rno:100912369 KEGG:rno:305373 NextBio:654455
            Genevestigator:B0BN99 Uniprot:B0BN99
        Length = 200

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 46/139 (33%), Positives = 69/139 (49%)

Query:     6 SKADAVGTDSKLKSKG-ARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPN 64
             +KAD V  D ++K  G A+ GK+                 S FF+F  EFR + K A+P 
Sbjct:    64 AKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPP------SGFFLFCSEFRPKIKSANPG 117

Query:    65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY-NKQLADGVNAAEENE 123
               S+  V K  GE W ++S+ EK P++ +A K K  Y K++ DY +K   DG     +  
Sbjct:   118 I-SIGDVAKKLGEMWNNLSDSEKQPYMTKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVA 176

Query:   124 SDKSKSEVNDEDDEEGSGE 142
               K + E  +E++EE   E
Sbjct:   177 RKKVEEEEEEEEEEEEEEE 195

 Score = 108 (43.1 bits), Expect = 4.2e-06, P = 4.2e-06
 Identities = 23/65 (35%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             SA+  F++  R++ K+ +P    + A   K   E+WK+MS  EK+ F E A+  K  Y++
Sbjct:    14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 73

Query:   104 NMQDY 108
              M+DY
Sbjct:    74 EMKDY 78


>UNIPROTKB|P36194 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 eggNOG:COG5648
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 HOVERGEN:HBG009000 EMBL:D14314 IPI:IPI00591130
            PIR:I50254 UniGene:Gga.4513 ProteinModelPortal:P36194 SMR:P36194
            STRING:P36194 PRIDE:P36194 Uniprot:P36194
        Length = 201

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 48/139 (34%), Positives = 68/139 (48%)

Query:     6 SKADAVGTDSKLKSKG-ARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPN 64
             +KAD V  D ++K  G A+ GK+                 S FF+F  EFR + K  +P 
Sbjct:    63 AKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPP------SGFFLFCSEFRPKIKSTNPG 116

Query:    65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY-NKQLADGVNAAEENE 123
               S+  V K  GE W ++S+ EK P+  +A K K  Y K++ DY +K   DG   A    
Sbjct:   117 I-SIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADYKSKGKFDGAKGAATKA 175

Query:   124 SDKSKSEVNDEDDEEGSGE 142
             + K K E  DE++EE   E
Sbjct:   176 ARK-KVEEEDEEEEEDEEE 193

 Score = 105 (42.0 bits), Expect = 9.6e-06, P = 9.6e-06
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SA+  F++  R++ K+      + A   K   E+WK+MS  EKA F E A+  K  Y++ 
Sbjct:    14 SAYAFFVQTCREEHKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDRE 73

Query:   105 MQDY 108
             M+DY
Sbjct:    74 MKDY 77


>UNIPROTKB|E1BIU3 [details] [associations]
            symbol:LOC532409 "Uncharacterized protein" species:9913
            "Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02004182
            IPI:IPI00839111 RefSeq:XP_003585778.1 Ensembl:ENSBTAT00000044962
            GeneID:532409 KEGG:bta:532409 OMA:FLENTRC ArrayExpress:E1BIU3
            Uniprot:E1BIU3
        Length = 186

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 45/134 (33%), Positives = 69/134 (51%)

Query:     6 SKADAVGTDSKLKSKG-ARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPN 64
             +KAD V  D ++K  G A+ GK+                 S FF+F  EFR + K A+P 
Sbjct:    64 AKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPP------SGFFLFCSEFRPKIKSANPG 117

Query:    65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY-NKQLADGVNAAEENE 123
               S+  V K  GE W ++S+ EK P++ +A K K  Y K++ DY +K   DG   A +  
Sbjct:   118 I-SIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADYKSKGKFDGAKGAAK-- 174

Query:   124 SDKSKSEVNDEDDE 137
                ++ +V +ED+E
Sbjct:   175 --VAQKKVEEEDEE 186

 Score = 104 (41.7 bits), Expect = 9.5e-06, P = 9.5e-06
 Identities = 23/65 (35%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             SA+  F++  R++ K+ +P    + A   K   E+WK+MS  EK+ F E A+  K  Y++
Sbjct:    14 SAYSFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEIAKADKVRYDR 73

Query:   104 NMQDY 108
              M+DY
Sbjct:    74 EMKDY 78


>UNIPROTKB|O15347 [details] [associations]
            symbol:HMGB3 "High mobility group protein B3" species:9606
            "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
            "chromosome" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=ISS] [GO:0003690 "double-stranded DNA binding"
            evidence=ISS] [GO:0008301 "DNA binding, bending" evidence=ISS]
            [GO:0007275 "multicellular organismal development" evidence=TAS]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0007275 GO:GO:0005634 GO:GO:0005694 GO:GO:0008301
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0006310 GO:GO:0003690 Pfam:PF09011 HOGENOM:HOG000197861
            HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2 eggNOG:NOG320947 CTD:3149
            KO:K11296 OMA:DNEKQPY EMBL:Y10043 EMBL:AF003626 EMBL:BC070482
            IPI:IPI00217477 RefSeq:NP_005333.2 UniGene:Hs.19114 PDB:2EQZ
            PDB:2YQI PDBsum:2EQZ PDBsum:2YQI ProteinModelPortal:O15347
            SMR:O15347 IntAct:O15347 STRING:O15347 PhosphoSite:O15347
            PaxDb:O15347 PeptideAtlas:O15347 PRIDE:O15347 DNASU:3149
            Ensembl:ENST00000325307 Ensembl:ENST00000448905 GeneID:3149
            KEGG:hsa:3149 UCSC:uc004fep.3 GeneCards:GC0XP150148 HGNC:HGNC:5004
            MIM:300193 neXtProt:NX_O15347 PharmGKB:PA35092 InParanoid:O15347
            PhylomeDB:O15347 EvolutionaryTrace:O15347 GenomeRNAi:3149
            NextBio:12480 ArrayExpress:O15347 Bgee:O15347 CleanEx:HS_HMGB3
            Genevestigator:O15347 GermOnline:ENSG00000029993 Uniprot:O15347
        Length = 200

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 44/139 (31%), Positives = 68/139 (48%)

Query:     6 SKADAVGTDSKLKSKG-ARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPN 64
             +KAD V  D ++K  G A+ GK+                 S FF+F  EFR + K  +P 
Sbjct:    64 AKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPP------SGFFLFCSEFRPKIKSTNPG 117

Query:    65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY-NKQLADGVNAAEENE 123
               S+  V K  GE W ++++ EK P++ +A K K  Y K++ DY +K   DG     +  
Sbjct:   118 I-SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVA 176

Query:   124 SDKSKSEVNDEDDEEGSGE 142
               K + E  +E++EE   E
Sbjct:   177 RKKVEEEDEEEEEEEEEEE 195

 Score = 106 (42.4 bits), Expect = 7.3e-06, P = 7.3e-06
 Identities = 23/65 (35%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             SA+  F++  R++ K+ +P    + A   K   E+WK+MS  EK+ F E A+  K  Y++
Sbjct:    14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73

Query:   104 NMQDY 108
              M+DY
Sbjct:    74 EMKDY 78


>ZFIN|ZDB-GENE-030131-341 [details] [associations]
            symbol:hmgb1a "high-mobility group box 1a"
            species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0009409 "response to cold"
            evidence=IDA] [GO:0030900 "forebrain development" evidence=IMP]
            [GO:0005886 "plasma membrane" evidence=IDA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            ZFIN:ZDB-GENE-030131-341 GO:GO:0005886 GO:GO:0005634 GO:GO:0003677
            GO:GO:0009409 GO:GO:0030900 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 HSSP:P07155
            HOVERGEN:HBG009000 EMBL:BC045917 IPI:IPI00489314 UniGene:Dr.150247
            UniGene:Dr.158952 ProteinModelPortal:Q7ZVC6 SMR:Q7ZVC6 PRIDE:Q7ZVC6
            ArrayExpress:Q7ZVC6 Bgee:Q7ZVC6 Uniprot:Q7ZVC6
        Length = 205

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 37/95 (38%), Positives = 54/95 (56%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  EFR + KE  P   S+  V K  GE W  +S +EK P+ ++A K K  Y K+
Sbjct:    99 SAFFIFCSEFRPKVKEETPG-LSIGDVAKRLGEMWNKISSEEKQPYEKKAAKLKEKYEKD 157

Query:   105 MQDYNKQLADGVNAAEE-NESDKSKSEVNDEDDEE 138
             +  Y  +   G  AA+  ++ DK+  E  D+D+EE
Sbjct:   158 IAAYRSKGKVGGGAAKAPSKPDKANDEDEDDDEEE 192

 Score = 103 (41.3 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 20/65 (30%), Positives = 37/65 (56%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP    + +   K   E+WK+MS  EK  F + A+  K+ Y +
Sbjct:    13 SSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMAKLDKARYER 72

Query:   104 NMQDY 108
              M++Y
Sbjct:    73 EMKNY 77


>UNIPROTKB|J9NVS3 [details] [associations]
            symbol:HMGB3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
            "DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 GeneTree:ENSGT00560000076717 OMA:DNEKQPY
            EMBL:AAEX03027044 EMBL:AAEX03027045 Ensembl:ENSCAFT00000045229
            Uniprot:J9NVS3
        Length = 219

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 47/139 (33%), Positives = 67/139 (48%)

Query:     6 SKADAVGTDSKLKSKG-ARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPN 64
             +KAD V  D ++K  G A+ GK+                 S FF+F  EFR + K  +P 
Sbjct:    82 AKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPP------SGFFLFCSEFRPKIKSTNPG 135

Query:    65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY-NKQLADGVNAAEENE 123
               S+  V K  GE W ++S+ EK P+  +A K K  Y K++ DY +K   DG     +  
Sbjct:   136 I-SIGDVAKKLGEMWNNLSDSEKQPYNNKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVA 194

Query:   124 SDKSKSEVNDEDDEEGSGE 142
               + K E  DE+DEE   E
Sbjct:   195 --RKKVEEEDEEDEEEEEE 211

 Score = 106 (42.4 bits), Expect = 9.7e-06, P = 9.7e-06
 Identities = 23/65 (35%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             SA+  F++  R++ K+ +P    + A   K   E+WK+MS  EK+ F E A+  K  Y++
Sbjct:    32 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 91

Query:   104 NMQDY 108
              M+DY
Sbjct:    92 EMKDY 96


>UNIPROTKB|E7EQU1 [details] [associations]
            symbol:HMGB3 "High mobility group protein B3" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00640781
            ProteinModelPortal:E7EQU1 SMR:E7EQU1 PRIDE:E7EQU1
            Ensembl:ENST00000455596 ArrayExpress:E7EQU1 Bgee:E7EQU1
            Uniprot:E7EQU1
        Length = 193

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 43/135 (31%), Positives = 67/135 (49%)

Query:     6 SKADAVGTDSKLKSKG-ARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPN 64
             +KAD V  D ++K  G A+ GK+                 S FF+F  EFR + K  +P 
Sbjct:    64 AKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPP------SGFFLFCSEFRPKIKSTNPG 117

Query:    65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY-NKQLADGVNAAEENE 123
               S+  V K  GE W ++++ EK P++ +A K K  Y K++ DY +K   DG     +  
Sbjct:   118 I-SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVA 176

Query:   124 SDKSKSEVNDEDDEE 138
               K + E  +E++EE
Sbjct:   177 RKKVEEEDEEEEEEE 191

 Score = 106 (42.4 bits), Expect = 6.3e-06, P = 6.3e-06
 Identities = 23/65 (35%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             SA+  F++  R++ K+ +P    + A   K   E+WK+MS  EK+ F E A+  K  Y++
Sbjct:    14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73

Query:   104 NMQDY 108
              M+DY
Sbjct:    74 EMKDY 78


>UNIPROTKB|E7ES08 [details] [associations]
            symbol:HMGB3 "High mobility group protein B3" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00643317
            ProteinModelPortal:E7ES08 SMR:E7ES08 PRIDE:E7ES08
            Ensembl:ENST00000419110 ArrayExpress:E7ES08 Bgee:E7ES08
            Uniprot:E7ES08
        Length = 188

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 43/135 (31%), Positives = 69/135 (51%)

Query:     6 SKADAVGTDSKLKSKG-ARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPN 64
             +KAD V  D ++K  G A+ GK+                 S FF+F  EFR + K  +P 
Sbjct:    64 AKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPP------SGFFLFCSEFRPKIKSTNPG 117

Query:    65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY-NKQLADGVNAAEENE 123
               S+  V K  GE W ++++ EK P++ +A K K  Y K++ DY +K   DG     +  
Sbjct:   118 I-SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFDGA----KGP 172

Query:   124 SDKSKSEVNDEDDEE 138
             +  ++ +V +ED+EE
Sbjct:   173 AKVARKKVEEEDEEE 187

 Score = 106 (42.4 bits), Expect = 5.7e-06, P = 5.7e-06
 Identities = 23/65 (35%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             SA+  F++  R++ K+ +P    + A   K   E+WK+MS  EK+ F E A+  K  Y++
Sbjct:    14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73

Query:   104 NMQDY 108
              M+DY
Sbjct:    74 EMKDY 78


>UNIPROTKB|F1N927 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
            "condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
            evidence=IEA] [GO:0002437 "inflammatory response to antigenic
            stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
            activity" evidence=IEA] [GO:0005615 "extracellular space"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
            "base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
            "cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
            kinase regulator activity" evidence=IEA] [GO:0017053
            "transcriptional repressor complex" evidence=IEA] [GO:0017055
            "negative regulation of RNA polymerase II transcriptional
            preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
            kinase activator activity" evidence=IEA] [GO:0030324 "lung
            development" evidence=IEA] [GO:0033151 "V(D)J recombination"
            evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
            [GO:0043065 "positive regulation of apoptotic process"
            evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=IEA]
            [GO:0043388 "positive regulation of DNA binding" evidence=IEA]
            [GO:0045639 "positive regulation of myeloid cell differentiation"
            evidence=IEA] [GO:0045819 "positive regulation of glycogen
            catabolic process" evidence=IEA] [GO:0045944 "positive regulation
            of transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
            [GO:0070491 "repressing transcription factor binding" evidence=IEA]
            [GO:2000426 "negative regulation of apoptotic cell clearance"
            evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
            Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
            GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
            GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
            GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
            GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
            GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
            GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
            GO:GO:2000426 EMBL:AADN02005232 IPI:IPI00818014
            Ensembl:ENSGALT00000036454 ArrayExpress:F1N927 Uniprot:F1N927
        Length = 214

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 38/101 (37%), Positives = 53/101 (52%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  EFR + K  HP   S+  V K  GE W + + D+K P+ ++A K K  Y K+
Sbjct:   100 SAFFLFCSEFRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLADGVN--AAEENESDKSKSEVNDEDDEEGSGE 142
             +  Y  K   D      A+  +S K K E  DED++E   E
Sbjct:   159 IAAYRAKGKVDAGKKVVAKAEKSKKKKEEEEDEDEDEEDEE 199

 Score = 107 (42.7 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
 Identities = 21/65 (32%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A+  K  Y K
Sbjct:    14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMAKADKLRYEK 73

Query:   104 NMQDY 108
              M++Y
Sbjct:    74 EMKNY 78

 Score = 50 (22.7 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query:   120 EENESDKSKSEVNDEDDEE 138
             EE+E D+ + E  +EDD++
Sbjct:   195 EEDEEDEEEEEEEEEDDDD 213


>UNIPROTKB|Q9YH06 [details] [associations]
            symbol:HMG1 "High mobility group 1 protein" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
            "condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
            evidence=IEA] [GO:0002437 "inflammatory response to antigenic
            stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
            activity" evidence=IEA] [GO:0005615 "extracellular space"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
            "base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
            "cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
            kinase regulator activity" evidence=IEA] [GO:0017053
            "transcriptional repressor complex" evidence=IEA] [GO:0017055
            "negative regulation of RNA polymerase II transcriptional
            preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
            kinase activator activity" evidence=IEA] [GO:0030324 "lung
            development" evidence=IEA] [GO:0033151 "V(D)J recombination"
            evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
            [GO:0043065 "positive regulation of apoptotic process"
            evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=IEA]
            [GO:0043388 "positive regulation of DNA binding" evidence=IEA]
            [GO:0045639 "positive regulation of myeloid cell differentiation"
            evidence=IEA] [GO:0045819 "positive regulation of glycogen
            catabolic process" evidence=IEA] [GO:0045944 "positive regulation
            of transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
            [GO:0070491 "repressing transcription factor binding" evidence=IEA]
            [GO:2000426 "negative regulation of apoptotic cell clearance"
            evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
            Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
            GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
            GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
            GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
            GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
            GO:GO:0045639 HSSP:P07155 HOGENOM:HOG000197861 OMA:GEDAMRK
            KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
            HOVERGEN:HBG009000 GO:GO:0006288 GO:GO:0010858 GO:GO:2000426
            EMBL:AADN02005232 EMBL:Y17968 EMBL:AJ851648 IPI:IPI00595982
            RefSeq:NP_990233.1 UniGene:Gga.4638 SMR:Q9YH06 STRING:Q9YH06
            Ensembl:ENSGALT00000027593 GeneID:395724 KEGG:gga:395724
            InParanoid:Q9YH06 NextBio:20815793 Uniprot:Q9YH06
        Length = 215

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 38/101 (37%), Positives = 53/101 (52%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  EFR + K  HP   S+  V K  GE W + + D+K P+ ++A K K  Y K+
Sbjct:   100 SAFFLFCSEFRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLADGVN--AAEENESDKSKSEVNDEDDEEGSGE 142
             +  Y  K   D      A+  +S K K E  DED++E   E
Sbjct:   159 IAAYRAKGKVDAGKKVVAKAEKSKKKKEEEEDEDEDEEDEE 199

 Score = 107 (42.7 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 21/65 (32%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A+  K  Y K
Sbjct:    14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMAKADKLRYEK 73

Query:   104 NMQDY 108
              M++Y
Sbjct:    74 EMKNY 78

 Score = 50 (22.7 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query:   120 EENESDKSKSEVNDEDDEE 138
             EE+E D+ + E  +EDD++
Sbjct:   195 EEDEEDEEEEEEEEEDDDD 213


>RGD|1585821 [details] [associations]
            symbol:LOC680968 "similar to High mobility group protein 1
            (HMG-1) (High mobility group protein B1) (Amphoterin)
            (Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] REFSEQ:XM_001059688 Ncbi:XP_001059688
        Length = 213

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 37/101 (36%), Positives = 53/101 (52%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A K K  Y K+
Sbjct:   100 SAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLADGVN--AAEENESDKSKSEVNDEDDEEGSGE 142
             +  Y  K   D       +  +S K K E +DE+DEE   E
Sbjct:   159 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEE 199

 Score = 104 (41.7 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A+  K+ Y +
Sbjct:    14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 73

Query:   104 NMQDY 108
              M+ Y
Sbjct:    74 EMKTY 78

 Score = 48 (22.0 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query:   110 KQLADGVNAAEENESDKSKSEVNDEDDEE 138
             K+  D     E+ E ++ + E  +EDD+E
Sbjct:   185 KEEEDDEEDEEDEEEEEEEEEEEEEDDDE 213


>RGD|1591683 [details] [associations]
            symbol:LOC681718 "similar to High mobility group protein 1
            (HMG-1) (High mobility group protein B1) (Amphoterin)
            (Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1591683
            GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
            GeneTree:ENSGT00560000076717 IPI:IPI00767302
            Ensembl:ENSRNOT00000045504 OMA:NNTASED ArrayExpress:F1MA29
            Uniprot:F1MA29
        Length = 215

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 37/101 (36%), Positives = 53/101 (52%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A K K  Y K+
Sbjct:   100 SAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLADGVN--AAEENESDKSKSEVNDEDDEEGSGE 142
             +  Y  K   D       +  +S K K E +DE+DEE   E
Sbjct:   159 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEE 199

 Score = 104 (41.7 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A+  K+ Y +
Sbjct:    14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 73

Query:   104 NMQDY 108
              M+ Y
Sbjct:    74 EMKTY 78


>RGD|2802 [details] [associations]
            symbol:Hmgb1 "high mobility group box 1" species:10116 "Rattus
          norvegicus" [GO:0000122 "negative regulation of transcription from
          RNA polymerase II promoter" evidence=ISO] [GO:0000400 "four-way
          junction DNA binding" evidence=IDA] [GO:0000401 "open form four-way
          junction DNA binding" evidence=IDA] [GO:0000402 "crossed form
          four-way junction DNA binding" evidence=IDA] [GO:0000793 "condensed
          chromosome" evidence=ISO] [GO:0000902 "cell morphogenesis"
          evidence=IMP] [GO:0001654 "eye development" evidence=ISO] [GO:0001934
          "positive regulation of protein phosphorylation" evidence=ISO]
          [GO:0002053 "positive regulation of mesenchymal cell proliferation"
          evidence=IDA] [GO:0002437 "inflammatory response to antigenic
          stimulus" evidence=ISO] [GO:0003681 "bent DNA binding" evidence=IDA]
          [GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003697
          "single-stranded DNA binding" evidence=IDA] [GO:0003700
          "sequence-specific DNA binding transcription factor activity"
          evidence=ISO] [GO:0005125 "cytokine activity" evidence=ISO;IDA]
          [GO:0005515 "protein binding" evidence=IPI] [GO:0005615
          "extracellular space" evidence=ISO;IDA] [GO:0005634 "nucleus"
          evidence=ISO;IDA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005737
          "cytoplasm" evidence=ISO;IDA] [GO:0006288 "base-excision repair, DNA
          ligation" evidence=ISO] [GO:0006357 "regulation of transcription from
          RNA polymerase II promoter" evidence=ISO] [GO:0006935 "chemotaxis"
          evidence=IDA] [GO:0007399 "nervous system development" evidence=IMP]
          [GO:0007623 "circadian rhythm" evidence=IEP] [GO:0008097 "5S rRNA
          binding" evidence=IDA] [GO:0008134 "transcription factor binding"
          evidence=ISO;IDA] [GO:0008156 "negative regulation of DNA
          replication" evidence=IDA] [GO:0008201 "heparin binding"
          evidence=IDA;TAS] [GO:0008284 "positive regulation of cell
          proliferation" evidence=IDA] [GO:0008301 "DNA binding, bending"
          evidence=ISO;IDA] [GO:0009408 "response to heat" evidence=IEP]
          [GO:0009749 "response to glucose stimulus" evidence=IEP] [GO:0009986
          "cell surface" evidence=ISO] [GO:0010858 "calcium-dependent protein
          kinase regulator activity" evidence=ISO] [GO:0010942 "positive
          regulation of cell death" evidence=IMP] [GO:0010976 "positive
          regulation of neuron projection development" evidence=IMP]
          [GO:0014911 "positive regulation of smooth muscle cell migration"
          evidence=IMP] [GO:0017055 "negative regulation of RNA polymerase II
          transcriptional preinitiation complex assembly" evidence=ISO]
          [GO:0030295 "protein kinase activator activity" evidence=ISO]
          [GO:0030324 "lung development" evidence=ISO] [GO:0030335 "positive
          regulation of cell migration" evidence=IDA] [GO:0031175 "neuron
          projection development" evidence=IGI] [GO:0031532 "actin cytoskeleton
          reorganization" evidence=IMP] [GO:0032392 "DNA geometric change"
          evidence=IDA] [GO:0032496 "response to lipopolysaccharide"
          evidence=IEP] [GO:0032868 "response to insulin stimulus"
          evidence=IEP] [GO:0033034 "positive regulation of myeloid cell
          apoptotic process" evidence=IDA] [GO:0033151 "V(D)J recombination"
          evidence=ISO] [GO:0034341 "response to interferon-gamma"
          evidence=IMP] [GO:0042277 "peptide binding" evidence=IDA] [GO:0042493
          "response to drug" evidence=IEP] [GO:0043005 "neuron projection"
          evidence=ISO] [GO:0043065 "positive regulation of apoptotic process"
          evidence=ISO;IMP] [GO:0043280 "positive regulation of cysteine-type
          endopeptidase activity involved in apoptotic process" evidence=ISO]
          [GO:0043388 "positive regulation of DNA binding" evidence=ISO]
          [GO:0045639 "positive regulation of myeloid cell differentiation"
          evidence=ISO] [GO:0045663 "positive regulation of myoblast
          differentiation" evidence=IMP] [GO:0045819 "positive regulation of
          glycogen catabolic process" evidence=ISO] [GO:0045931 "positive
          regulation of mitotic cell cycle" evidence=IDA] [GO:0045944 "positive
          regulation of transcription from RNA polymerase II promoter"
          evidence=ISO] [GO:0046983 "protein dimerization activity"
          evidence=IDA] [GO:0050727 "regulation of inflammatory response"
          evidence=IDA] [GO:0050786 "RAGE receptor binding" evidence=IMP;IPI]
          [GO:0050831 "male-specific defense response to bacterium"
          evidence=IDA] [GO:0050930 "induction of positive chemotaxis"
          evidence=IDA] [GO:0051384 "response to glucocorticoid stimulus"
          evidence=ISO] [GO:0051450 "myoblast proliferation" evidence=IMP]
          [GO:0051861 "glycolipid binding" evidence=IDA] [GO:0070491
          "repressing transcription factor binding" evidence=ISO] [GO:0071347
          "cellular response to interleukin-1" evidence=IEP] [GO:0017053
          "transcriptional repressor complex" evidence=ISO] InterPro:IPR009071
          InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:2802
          GO:GO:0005634 GO:GO:0005737 GO:GO:0005694 GO:GO:0005615 GO:GO:0010976
          GO:GO:0042493 GO:GO:0045931 GO:GO:0007623 GO:GO:0009749 GO:GO:0032496
          GO:GO:0008201 GO:GO:0009408 GO:GO:0006935 GO:GO:0032868 GO:GO:0046983
          eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
          SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0031532 GO:GO:0050727
          GO:GO:0042277 GO:GO:0003690 GO:GO:0003697 GO:GO:0000902 GO:GO:0033034
          GO:GO:0005125 GO:GO:0008134 GO:GO:0031175 GO:GO:0071347 GO:GO:0050930
          GO:GO:0008156 GO:GO:0034341 GO:GO:0002053 GO:GO:0014911 GO:GO:0045663
          GO:GO:0008097 GO:GO:0003681 GO:GO:0051861 Pfam:PF09011 GO:GO:0051450
          OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802 CTD:3146
          HOVERGEN:HBG009000 GO:GO:0050786 EMBL:M64986 EMBL:Y00463
          EMBL:AF275734 EMBL:BC061779 EMBL:BC081839 EMBL:BC088402
          IPI:IPI00555214 PIR:A41175 RefSeq:NP_037095.1 UniGene:Rn.144565
          UniGene:Rn.15185 UniGene:Rn.4121 PDB:1AAB PDB:1CKT PDB:1HME PDB:1HMF
          PDB:2GZK PDBsum:1AAB PDBsum:1CKT PDBsum:1HME PDBsum:1HMF PDBsum:2GZK
          ProteinModelPortal:P63159 SMR:P63159 STRING:P63159 PhosphoSite:P63159
          PRIDE:P63159 GeneID:25459 KEGG:rno:25459 InParanoid:P63159
          EvolutionaryTrace:P63159 NextBio:606729 ArrayExpress:P63159
          Genevestigator:P63159 GermOnline:ENSRNOG00000030351 GO:GO:0000402
          GO:GO:0000401 GO:GO:0032392 GO:GO:0050831 Uniprot:P63159
        Length = 215

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 37/101 (36%), Positives = 53/101 (52%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A K K  Y K+
Sbjct:   100 SAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLADGVN--AAEENESDKSKSEVNDEDDEEGSGE 142
             +  Y  K   D       +  +S K K E +DE+DEE   E
Sbjct:   159 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEE 199

 Score = 104 (41.7 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A+  K+ Y +
Sbjct:    14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 73

Query:   104 NMQDY 108
              M+ Y
Sbjct:    74 EMKTY 78


>UNIPROTKB|P07156 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:10029
            "Cricetulus griseus" [GO:0000793 "condensed chromosome"
            evidence=ISS] [GO:0006288 "base-excision repair, DNA ligation"
            evidence=ISS] [GO:0017055 "negative regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=ISS]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011
            GO:GO:0017055 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:Y00365
            PIR:A27853 PDB:1HSM PDB:1HSN PDB:1NHM PDB:1NHN PDBsum:1HSM
            PDBsum:1HSN PDBsum:1NHM PDBsum:1NHN ProteinModelPortal:P07156
            SMR:P07156 PRIDE:P07156 EvolutionaryTrace:P07156 Uniprot:P07156
        Length = 180

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 37/101 (36%), Positives = 53/101 (52%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A K K  Y K+
Sbjct:    65 SAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKD 123

Query:   105 MQDYN-KQLADGVN--AAEENESDKSKSEVNDEDDEEGSGE 142
             +  Y  K   D       +  +S K K E +DE+DEE   E
Sbjct:   124 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEE 164


>UNIPROTKB|Q6YKA4 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9615
            "Canis lupus familiaris" [GO:0070491 "repressing transcription
            factor binding" evidence=IEA] [GO:0043388 "positive regulation of
            DNA binding" evidence=IEA] [GO:0043280 "positive regulation of
            cysteine-type endopeptidase activity involved in apoptotic process"
            evidence=IEA] [GO:0043065 "positive regulation of apoptotic
            process" evidence=IEA] [GO:0033151 "V(D)J recombination"
            evidence=IEA] [GO:0017055 "negative regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            [GO:0017053 "transcriptional repressor complex" evidence=IEA]
            [GO:0009986 "cell surface" evidence=IEA] [GO:0006288 "base-excision
            repair, DNA ligation" evidence=IEA] [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=IEA]
            [GO:0002437 "inflammatory response to antigenic stimulus"
            evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053
            GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
            GO:GO:0045944 GO:GO:0003700 eggNOG:COG5648 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065
            GO:GO:0043280 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
            GO:GO:0033151 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
            KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
            HOVERGEN:HBG009000 GO:GO:0006288 EMBL:AY135519 EMBL:AY135521
            RefSeq:NP_001002937.1 UniGene:Cfa.416 ProteinModelPortal:Q6YKA4
            SMR:Q6YKA4 STRING:Q6YKA4 PRIDE:Q6YKA4 Ensembl:ENSCAFT00000010639
            GeneID:403170 KEGG:cfa:403170 InParanoid:Q6YKA4 NextBio:20816914
            Uniprot:Q6YKA4
        Length = 215

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 37/101 (36%), Positives = 52/101 (51%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A K K  Y K+
Sbjct:   100 SAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLADGVN--AAEENESDKSKSEVNDEDDEEGSGE 142
             +  Y  K   D       +  +S K K E  DE+DEE   E
Sbjct:   159 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEE 199

 Score = 104 (41.7 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A+  K+ Y +
Sbjct:    14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 73

Query:   104 NMQDY 108
              M+ Y
Sbjct:    74 EMKTY 78

 Score = 36 (17.7 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
 Identities = 4/19 (21%), Positives = 14/19 (73%)

Query:   120 EENESDKSKSEVNDEDDEE 138
             E+ E ++ + + ++E+D++
Sbjct:   195 EDEEEEEDEEDEDEEEDDD 213


>UNIPROTKB|P09429 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9606
            "Homo sapiens" [GO:0001654 "eye development" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0010858
            "calcium-dependent protein kinase regulator activity" evidence=IEA]
            [GO:0030295 "protein kinase activator activity" evidence=IEA]
            [GO:0030324 "lung development" evidence=IEA] [GO:0043005 "neuron
            projection" evidence=IEA] [GO:0045639 "positive regulation of
            myeloid cell differentiation" evidence=IEA] [GO:0045819 "positive
            regulation of glycogen catabolic process" evidence=IEA] [GO:0051384
            "response to glucocorticoid stimulus" evidence=IEA] [GO:2000426
            "negative regulation of apoptotic cell clearance" evidence=IEA]
            [GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006357
            "regulation of transcription from RNA polymerase II promoter"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0006288 "base-excision repair, DNA ligation" evidence=IDA]
            [GO:0017055 "negative regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IDA]
            [GO:0031175 "neuron projection development" evidence=ISS]
            [GO:0050786 "RAGE receptor binding" evidence=ISS] [GO:0043388
            "positive regulation of DNA binding" evidence=IDA] [GO:0006310 "DNA
            recombination" evidence=ISS] [GO:0043280 "positive regulation of
            cysteine-type endopeptidase activity involved in apoptotic process"
            evidence=IDA] [GO:0043065 "positive regulation of apoptotic
            process" evidence=IDA] [GO:0005125 "cytokine activity"
            evidence=ISS] [GO:0001773 "myeloid dendritic cell activation"
            evidence=ISS] [GO:0002407 "dendritic cell chemotaxis" evidence=ISS]
            [GO:0042056 "chemoattractant activity" evidence=ISS] [GO:0005634
            "nucleus" evidence=IDA] [GO:0051103 "DNA ligation involved in DNA
            repair" evidence=ISS] [GO:0009986 "cell surface" evidence=IDA]
            [GO:0002437 "inflammatory response to antigenic stimulus"
            evidence=IEP] [GO:0005615 "extracellular space" evidence=IDA]
            [GO:0006265 "DNA topological change" evidence=ISS] [GO:0003690
            "double-stranded DNA binding" evidence=ISS] [GO:0003697
            "single-stranded DNA binding" evidence=ISS] [GO:0008301 "DNA
            binding, bending" evidence=ISS;IMP] [GO:0000122 "negative
            regulation of transcription from RNA polymerase II promoter"
            evidence=IMP] [GO:0017053 "transcriptional repressor complex"
            evidence=IDA] [GO:0033151 "V(D)J recombination" evidence=IDA]
            [GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IDA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IDA] [GO:0008134
            "transcription factor binding" evidence=IPI] [GO:0070491
            "repressing transcription factor binding" evidence=IPI] [GO:0005576
            "extracellular region" evidence=TAS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0006309 "apoptotic DNA fragmentation"
            evidence=TAS] [GO:0006915 "apoptotic process" evidence=TAS]
            [GO:0006921 "cellular component disassembly involved in execution
            phase of apoptosis" evidence=TAS] [GO:0045087 "innate immune
            response" evidence=TAS] [GO:0050918 "positive chemotaxis"
            evidence=ISS] Reactome:REACT_578 InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
            Reactome:REACT_6900 GO:GO:0005615 GO:GO:0005654 GO:GO:0009986
            GO:GO:0002437 GO:GO:0003684 GO:GO:0030324 EMBL:CH471075
            GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0045087
            GO:GO:0003700 GO:GO:0045860 GO:GO:0030295 eggNOG:COG5648
            GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0043065 GO:GO:0003690 GO:GO:0003697
            GO:GO:0043280 GO:GO:0045819 GO:GO:0005125 GO:GO:0006309
            GO:GO:0000793 Pathway_Interaction_DB:amb2_neutrophils_pathway
            GO:GO:0042056 GO:GO:0031175 GO:GO:0001654 GO:GO:0043388
            GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
            GO:GO:0006265 GO:GO:0045639 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861
            OMA:GEDAMRK KO:K10802 GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000
            GO:GO:0006288 EMBL:X12597 EMBL:U51677 EMBL:D63874 EMBL:EF157968
            EMBL:AY377859 EMBL:AK291494 EMBL:AK122825 EMBL:CR749614
            EMBL:CR456863 EMBL:BT006940 EMBL:BT020159 EMBL:EU012027
            EMBL:AL353648 EMBL:BC003378 EMBL:BC030981 EMBL:BC066889
            EMBL:BC067732 EMBL:BC141844 IPI:IPI00419258 PIR:S02826
            RefSeq:NP_002119.1 UniGene:Hs.434102 UniGene:Hs.593339
            UniGene:Hs.596078 UniGene:Hs.741195 PDB:2LY4 PDB:2YRQ PDBsum:2LY4
            PDBsum:2YRQ ProteinModelPortal:P09429 SMR:P09429 DIP:DIP-24195N
            IntAct:P09429 MINT:MINT-153055 STRING:P09429 PhosphoSite:P09429
            DMDM:123369 DOSAC-COBS-2DPAGE:P09429 PaxDb:P09429
            PeptideAtlas:P09429 PRIDE:P09429 DNASU:3146 Ensembl:ENST00000339872
            Ensembl:ENST00000341423 Ensembl:ENST00000399494
            Ensembl:ENST00000405805 GeneID:3146 KEGG:hsa:3146 UCSC:uc001usx.3
            GeneCards:GC13M031032 H-InvDB:HIX0030745 HGNC:HGNC:4983
            HPA:CAB005873 HPA:HPA003506 MIM:163905 neXtProt:NX_P09429
            PharmGKB:PA188 InParanoid:P09429 PhylomeDB:P09429 ChiTaRS:HMGB1
            EvolutionaryTrace:P09429 GenomeRNAi:3146 NextBio:12470
            ArrayExpress:P09429 Bgee:P09429 CleanEx:HS_HMGB1
            Genevestigator:P09429 GermOnline:ENSG00000189403 GO:GO:0010858
            GO:GO:0050786 GO:GO:2000426 Uniprot:P09429
        Length = 215

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 37/101 (36%), Positives = 52/101 (51%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A K K  Y K+
Sbjct:   100 SAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLADGVN--AAEENESDKSKSEVNDEDDEEGSGE 142
             +  Y  K   D       +  +S K K E  DE+DEE   E
Sbjct:   159 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEE 199

 Score = 104 (41.7 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A+  K+ Y +
Sbjct:    14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 73

Query:   104 NMQDY 108
              M+ Y
Sbjct:    74 EMKTY 78

 Score = 36 (17.7 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
 Identities = 4/19 (21%), Positives = 14/19 (73%)

Query:   120 EENESDKSKSEVNDEDDEE 138
             E+ E ++ + + ++E+D++
Sbjct:   195 EDEEEEEDEEDEDEEEDDD 213


>RGD|1589841 [details] [associations]
            symbol:LOC690940 "similar to High mobility group protein 1
            (HMG-1) (High mobility group protein B1) (Amphoterin)
            (Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] REFSEQ:XM_001076232 Ncbi:XP_001076232
        Length = 214

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 37/101 (36%), Positives = 52/101 (51%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A K K  Y K+
Sbjct:   100 SAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTASDDKQPYEKKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLADGVN--AAEENESDKSKSEVNDEDDEEGSGE 142
                Y  K   D       +  +S K K E +DE+DEE   E
Sbjct:   159 TAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEE 199

 Score = 109 (43.4 bits), Expect = 4.1e-06, P = 4.1e-06
 Identities = 21/65 (32%), Positives = 39/65 (60%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP+ + + + V K   E+WK+MS  EK  F + A+  K+ Y +
Sbjct:    14 SSYAFFVQTCREEHKKKHPDASVNFSEVSKKCSERWKTMSAKEKGKFEDMAKADKARYER 73

Query:   104 NMQDY 108
              M+ Y
Sbjct:    74 EMKTY 78


>RGD|1593466 [details] [associations]
            symbol:LOC689398 "similar to High mobility group protein 1
            (HMG-1) (High mobility group protein B1) (Amphoterin)
            (Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] REFSEQ:XM_001068941 Ncbi:XP_001068941
        Length = 214

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 37/101 (36%), Positives = 52/101 (51%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A K K  Y K+
Sbjct:   100 SAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTASDDKQPYEKKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLADGVN--AAEENESDKSKSEVNDEDDEEGSGE 142
                Y  K   D       +  +S K K E +DE+DEE   E
Sbjct:   159 TAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEE 199

 Score = 109 (43.4 bits), Expect = 4.1e-06, P = 4.1e-06
 Identities = 21/65 (32%), Positives = 39/65 (60%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP+ + + + V K   E+WK+MS  EK  F + A+  K+ Y +
Sbjct:    14 SSYAFFVQTCREEHKKKHPDASVNFSEVSKKCSERWKTMSAKEKGKFEDMAKADKARYER 73

Query:   104 NMQDY 108
              M+ Y
Sbjct:    74 EMKTY 78


>UNIPROTKB|P10103 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9913
            "Bos taurus" [GO:0050918 "positive chemotaxis" evidence=IDA]
            [GO:0017055 "negative regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=ISS]
            [GO:0006288 "base-excision repair, DNA ligation" evidence=ISS]
            [GO:0000793 "condensed chromosome" evidence=ISS] [GO:0033151 "V(D)J
            recombination" evidence=IDA] [GO:0003684 "damaged DNA binding"
            evidence=IDA] [GO:0006357 "regulation of transcription from RNA
            polymerase II promoter" evidence=ISS] [GO:0006338 "chromatin
            remodeling" evidence=NAS] [GO:0042393 "histone binding"
            evidence=IDA] [GO:0003697 "single-stranded DNA binding"
            evidence=IDA] [GO:0006265 "DNA topological change" evidence=IDA]
            [GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0008301
            "DNA binding, bending" evidence=IDA] [GO:0001773 "myeloid dendritic
            cell activation" evidence=IDA] [GO:0042056 "chemoattractant
            activity" evidence=IDA] [GO:0002407 "dendritic cell chemotaxis"
            evidence=IDA] [GO:0006310 "DNA recombination" evidence=IDA]
            [GO:0070491 "repressing transcription factor binding" evidence=IEA]
            [GO:0043388 "positive regulation of DNA binding" evidence=IEA]
            [GO:0043280 "positive regulation of cysteine-type endopeptidase
            activity involved in apoptotic process" evidence=IEA] [GO:0043065
            "positive regulation of apoptotic process" evidence=IEA]
            [GO:0017053 "transcriptional repressor complex" evidence=IEA]
            [GO:0009986 "cell surface" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0002437 "inflammatory response to antigenic
            stimulus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053 GO:GO:0009986
            GO:GO:0005730 GO:GO:0002437 GO:GO:0003684 GO:GO:0045944
            GO:GO:0003700 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0043065 GO:GO:0003690 GO:GO:0003697 GO:GO:0043280
            GO:GO:0042393 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
            GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
            GO:GO:0006265 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
            KO:K10802 GO:GO:0017055 EMBL:X12796 EMBL:BT030587 EMBL:BC102929
            EMBL:M26110 IPI:IPI00710114 PIR:S01947 RefSeq:NP_788785.1
            UniGene:Bt.49650 ProteinModelPortal:P10103 SMR:P10103 STRING:P10103
            PRIDE:P10103 Ensembl:ENSBTAT00000024094 GeneID:282691
            KEGG:bta:282691 CTD:3146 GeneTree:ENSGT00560000076717
            HOVERGEN:HBG009000 InParanoid:P10103 NextBio:20806359 GO:GO:0006288
            Uniprot:P10103
        Length = 215

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 37/101 (36%), Positives = 52/101 (51%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A K K  Y K+
Sbjct:   100 SAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLADGVN--AAEENESDKSKSEVNDEDDEEGSGE 142
             +  Y  K   D       +  +S K K E  DE+DEE   E
Sbjct:   159 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEE 199

 Score = 104 (41.7 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A+  K+ Y +
Sbjct:    14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 73

Query:   104 NMQDY 108
              M+ Y
Sbjct:    74 EMKTY 78


>UNIPROTKB|F2Z594 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9823
            "Sus scrofa" [GO:2000426 "negative regulation of apoptotic cell
            clearance" evidence=IEA] [GO:0070491 "repressing transcription
            factor binding" evidence=IEA] [GO:0051384 "response to
            glucocorticoid stimulus" evidence=IEA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0045819 "positive regulation of glycogen
            catabolic process" evidence=IEA] [GO:0045639 "positive regulation
            of myeloid cell differentiation" evidence=IEA] [GO:0043388
            "positive regulation of DNA binding" evidence=IEA] [GO:0043280
            "positive regulation of cysteine-type endopeptidase activity
            involved in apoptotic process" evidence=IEA] [GO:0043065 "positive
            regulation of apoptotic process" evidence=IEA] [GO:0043005 "neuron
            projection" evidence=IEA] [GO:0033151 "V(D)J recombination"
            evidence=IEA] [GO:0030324 "lung development" evidence=IEA]
            [GO:0030295 "protein kinase activator activity" evidence=IEA]
            [GO:0017055 "negative regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            [GO:0017053 "transcriptional repressor complex" evidence=IEA]
            [GO:0010858 "calcium-dependent protein kinase regulator activity"
            evidence=IEA] [GO:0009986 "cell surface" evidence=IEA] [GO:0006288
            "base-excision repair, DNA ligation" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0005615 "extracellular space"
            evidence=IEA] [GO:0005125 "cytokine activity" evidence=IEA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0002437 "inflammatory response to
            antigenic stimulus" evidence=IEA] [GO:0001654 "eye development"
            evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
            GO:GO:0017053 GO:GO:0005615 GO:GO:0009986 GO:GO:0005730
            GO:GO:0002437 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
            GO:GO:0051384 GO:GO:0043005 GO:GO:0003700 GO:GO:0045860
            GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280 GO:GO:0045819
            GO:GO:0000793 GO:GO:0001654 GO:GO:0043388 Pfam:PF09011
            GO:GO:0033151 GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
            GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
            GO:GO:2000426 EMBL:CU062617 ProteinModelPortal:F2Z594 SMR:F2Z594
            PRIDE:F2Z594 Ensembl:ENSSSCT00000010221 Uniprot:F2Z594
        Length = 215

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 37/101 (36%), Positives = 52/101 (51%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A K K  Y K+
Sbjct:   100 SAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLADGVN--AAEENESDKSKSEVNDEDDEEGSGE 142
             +  Y  K   D       +  +S K K E  DE+DEE   E
Sbjct:   159 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEE 199

 Score = 104 (41.7 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A+  K+ Y +
Sbjct:    14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 73

Query:   104 NMQDY 108
              M+ Y
Sbjct:    74 EMKTY 78


>UNIPROTKB|P12682 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9823
            "Sus scrofa" [GO:0051103 "DNA ligation involved in DNA repair"
            evidence=IDA] [GO:0017055 "negative regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=ISS]
            [GO:0000793 "condensed chromosome" evidence=ISS] [GO:0006288
            "base-excision repair, DNA ligation" evidence=ISS] [GO:0005634
            "nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793
            Pfam:PF09011 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802
            GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:M21683
            PIR:A28897 RefSeq:NP_001004034.1 UniGene:Ssc.22696
            ProteinModelPortal:P12682 SMR:P12682 STRING:P12682 PRIDE:P12682
            GeneID:445521 KEGG:ssc:445521 Uniprot:P12682
        Length = 215

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 37/101 (36%), Positives = 52/101 (51%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A K K  Y K+
Sbjct:   100 SAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKHPYEKKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLADGVN--AAEENESDKSKSEVNDEDDEEGSGE 142
             +  Y  K   D       +  +S K K E  DE+DEE   E
Sbjct:   159 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEE 199

 Score = 104 (41.7 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A+  K+ Y +
Sbjct:    14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 73

Query:   104 NMQDY 108
              M+ Y
Sbjct:    74 EMKTY 78


>RGD|1596979 [details] [associations]
            symbol:LOC678705 "hypothetical protein LOC678705" species:10116
            "Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] REFSEQ:XM_001053005
            Ncbi:XP_001053005
        Length = 214

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 37/101 (36%), Positives = 53/101 (52%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A K K  Y K+
Sbjct:   100 SAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEIWNNTAADDKQPYEKKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLADGVN--AAEENESDKSKSEVNDEDDEEGSGE 142
             +  Y  K   D       +  +S K K E +DE+DEE   E
Sbjct:   159 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEE 199

 Score = 104 (41.7 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A+  K+ Y +
Sbjct:    14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 73

Query:   104 NMQDY 108
              M+ Y
Sbjct:    74 EMKTY 78


>UNIPROTKB|E1BMK2 [details] [associations]
            symbol:E1BMK2 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005737
            GO:GO:0005615 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
            GO:GO:0051384 GO:GO:0043005 GO:GO:0045860 GO:GO:0030295
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0045819 GO:GO:0001654 Pfam:PF09011 GO:GO:0045639
            GeneTree:ENSGT00560000076717 GO:GO:0010858 GO:GO:2000426
            EMBL:DAAA02042275 IPI:IPI00688378 Ensembl:ENSBTAT00000019791
            OMA:EXDIAAY Uniprot:E1BMK2
        Length = 215

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 37/101 (36%), Positives = 52/101 (51%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A K K  Y K+
Sbjct:   100 SAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAVDDKQPYEKKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLADGVN--AAEENESDKSKSEVNDEDDEEGSGE 142
             +  Y  K   D       +  +S K K E  DE+DEE   E
Sbjct:   159 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEE 199

 Score = 97 (39.2 bits), Expect = 0.00019, P = 0.00019
 Identities = 19/65 (29%), Positives = 37/65 (56%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++  + HP+ + + +   K   E+WK+MS  EK  F + A+  K+ Y +
Sbjct:    14 SSYAFFVQTCREEHTKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKVDKARYER 73

Query:   104 NMQDY 108
              M+ Y
Sbjct:    74 EMKTY 78


>RGD|1586285 [details] [associations]
            symbol:LOC691220 "hypothetical protein LOC691220" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
            RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
            GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
            IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
            Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
            NextBio:716771 Uniprot:D3ZCR3
        Length = 214

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 36/101 (35%), Positives = 53/101 (52%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A K K  Y K+
Sbjct:   100 SAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLADGVN--AAEENESDKSKSEVNDEDDEEGSGE 142
             +  Y  K   D       +  +S K K E ++E+DEE   E
Sbjct:   159 IPAYRAKGKPDAAKKGVVKAEKSKKKKEEEDNEEDEEDEEE 199

 Score = 104 (41.7 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A+  K+ Y +
Sbjct:    14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 73

Query:   104 NMQDY 108
              M+ Y
Sbjct:    74 EMKTY 78

 Score = 48 (22.0 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query:   120 EENESDKSKSEVNDEDDEEGSGE 142
             E+ E ++ + E  DED+E+   E
Sbjct:   192 EDEEDEEEEEEEEDEDEEDDDDE 214


>RGD|1588313 [details] [associations]
            symbol:LOC679451 "similar to High mobility group protein 1
            (HMG-1) (High mobility group protein B1) (Amphoterin)
            (Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
            RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
            GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
            IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
            Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
            NextBio:716771 Uniprot:D3ZCR3
        Length = 214

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 36/101 (35%), Positives = 53/101 (52%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A K K  Y K+
Sbjct:   100 SAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLADGVN--AAEENESDKSKSEVNDEDDEEGSGE 142
             +  Y  K   D       +  +S K K E ++E+DEE   E
Sbjct:   159 IPAYRAKGKPDAAKKGVVKAEKSKKKKEEEDNEEDEEDEEE 199

 Score = 104 (41.7 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A+  K+ Y +
Sbjct:    14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 73

Query:   104 NMQDY 108
              M+ Y
Sbjct:    74 EMKTY 78

 Score = 48 (22.0 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query:   120 EENESDKSKSEVNDEDDEEGSGE 142
             E+ E ++ + E  DED+E+   E
Sbjct:   192 EDEEDEEEEEEEEDEDEEDDDDE 214


>RGD|1587112 [details] [associations]
            symbol:Hmg1l1 "high-mobility group (nonhistone chromosomal)
            protein 1-like 1" species:10116 "Rattus norvegicus" [GO:0003674
            "molecular_function" evidence=ND] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1587112
            GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
            GeneTree:ENSGT00560000076717 IPI:IPI00564933 RefSeq:XP_003748829.1
            RefSeq:XP_003753270.1 Ensembl:ENSRNOT00000047765 GeneID:100909581
            KEGG:rno:100909581 OMA:KEYHSAR Uniprot:D3ZL49
        Length = 215

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 37/101 (36%), Positives = 52/101 (51%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ + A K K  Y K+
Sbjct:   100 SAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWTNTAADDKQPYGKMAAKLKEKYEKD 158

Query:   105 MQDYN-KQLADGVN--AAEENESDKSKSEVNDEDDEEGSGE 142
             +  Y  K   D       +  +S K K E +DE+DEE   E
Sbjct:   159 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEE 199

 Score = 96 (38.9 bits), Expect = 0.00037, P = 0.00037
 Identities = 19/65 (29%), Positives = 37/65 (56%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK    + A+  K+ Y +
Sbjct:    14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKCEDMAKADKARYER 73

Query:   104 NMQDY 108
              M+ Y
Sbjct:    74 EMKTY 78


>RGD|1563668 [details] [associations]
            symbol:RGD1563668 "similar to High mobility group protein 1
            (HMG-1)" species:10116 "Rattus norvegicus" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            REFSEQ:XM_001074778 Ncbi:XP_001074778
        Length = 211

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 37/101 (36%), Positives = 52/101 (51%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ + A K K  Y K+
Sbjct:   100 SAFFLFCSEYRPKIKGEHPG-LSIGDVVKKLGEMWTNTAADDKQPYEKMAAKLKEKYEKD 158

Query:   105 MQDYN-KQLADGVN--AAEENESDKSKSEVNDEDDEEGSGE 142
             +  Y  K   D       +  +S K K E +DE+DEE   E
Sbjct:   159 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEE 199

 Score = 104 (41.7 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A+  K+ Y +
Sbjct:    14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 73

Query:   104 NMQDY 108
              M+ Y
Sbjct:    74 EMKTY 78

 Score = 50 (22.7 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query:   120 EENESDKSKSEVNDEDDEE 138
             EE+E D+ + E  DE+D++
Sbjct:   191 EEDEEDEEEEEEEDEEDDD 209

 Score = 45 (20.9 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query:   120 EENESDKSKSEVNDEDDE 137
             EE+E ++ + +  D+DDE
Sbjct:   194 EEDEEEEEEEDEEDDDDE 211


>RGD|1588759 [details] [associations]
            symbol:Hmgb1-ps3 "high mobility group box 1, pseudogene 3"
            species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            RGD:1588759 GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
            OrthoDB:EOG4KWJV1 GeneTree:ENSGT00560000076717 IPI:IPI00366734
            Ensembl:ENSRNOT00000046626 Uniprot:D3ZGW6
        Length = 212

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 37/100 (37%), Positives = 52/100 (52%)

Query:    46 AFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNM 105
             AFF+F  E+R + K  HP   S+  V K  GE W + + D+K P  ++A K K  Y K++
Sbjct:   101 AFFLFCSEYRPKIKGEHPG-LSIGDVVKKLGEMWNNTAVDDKQPCEKKAAKLKEKYEKDI 159

Query:   106 QDYN-KQLADGVN--AAEENESDKSKSEVNDEDDEEGSGE 142
               Y  K   D V     +  +S K K E +DE+DEE   E
Sbjct:   160 AAYRAKGKPDAVKKGVVKAEKSKKKKEEEDDEEDEEDEEE 199

 Score = 100 (40.3 bits), Expect = 4.3e-05, P = 4.3e-05
 Identities = 19/65 (29%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  +++ K+ HP+ + + +   K   E+WK+MS  EK  F + A+  K+ Y +
Sbjct:    14 SSYAFFVQTCQEEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 73

Query:   104 NMQDY 108
              M+ Y
Sbjct:    74 EMKTY 78


>RGD|1589528 [details] [associations]
            symbol:LOC679344 "similar to High mobility group protein 1
            (HMG-1) (High mobility group protein B1) (Amphoterin)
            (Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] REFSEQ:XM_001054795 Ncbi:XP_001054795
        Length = 215

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 36/101 (35%), Positives = 51/101 (50%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E+  + K  HP   S+  V K  GE W + + D+K P  ++A K K  Y K+
Sbjct:   100 SAFFLFCSEYHPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPCEKKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLADGVN--AAEENESDKSKSEVNDEDDEEGSGE 142
             +  Y  K   D       +  +S K K E +DE+DEE   E
Sbjct:   159 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEE 199

 Score = 104 (41.7 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A+  K+ Y +
Sbjct:    14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 73

Query:   104 NMQDY 108
              M+ Y
Sbjct:    74 EMKTY 78


>RGD|1592627 [details] [associations]
            symbol:LOC685520 "similar to High mobility group protein 1
            (HMG-1) (High mobility group protein B1) (Amphoterin)
            (Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] REFSEQ:XM_003749913 Ncbi:XP_003749961
        Length = 215

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 36/101 (35%), Positives = 51/101 (50%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E+  + K  HP   S+  V K  GE W + + D+K P  ++A K K  Y K+
Sbjct:   100 SAFFLFCSEYHPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPCEKKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLADGVN--AAEENESDKSKSEVNDEDDEEGSGE 142
             +  Y  K   D       +  +S K K E +DE+DEE   E
Sbjct:   159 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEE 199

 Score = 104 (41.7 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A+  K+ Y +
Sbjct:    14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 73

Query:   104 NMQDY 108
              M+ Y
Sbjct:    74 EMKTY 78


>ZFIN|ZDB-GENE-050417-290 [details] [associations]
            symbol:hmgb3b "high-mobility group box 3b"
            species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            ZFIN:ZDB-GENE-050417-290 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 HOGENOM:HOG000197861 HOVERGEN:HBG009000 KO:K11296
            EMBL:BC093186 IPI:IPI00511002 RefSeq:NP_001017769.1
            UniGene:Dr.75880 ProteinModelPortal:Q567G0 SMR:Q567G0 GeneID:550466
            KEGG:dre:550466 CTD:550466 InParanoid:Q567G0 OrthoDB:EOG4TB4CM
            NextBio:20879710 ArrayExpress:Q567G0 Uniprot:Q567G0
        Length = 198

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 33/98 (33%), Positives = 55/98 (56%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             S FF+F  E R   K  +P+   +  V K  G  W ++S+ EK PF+  A+K K  Y K+
Sbjct:    99 SGFFLFCAEQRPIIKAQNPS-LGIGDVAKKLGGMWNNLSDSEKQPFLSNADKLKDKYQKD 157

Query:   105 MQDYNKQLADGVNAAE----ENESDKSKSEVNDEDDEE 138
             M  Y K+ + G ++A+    +++ D  + E +D+DD+E
Sbjct:   158 MAFYRKKGSGGSSSAKSEPKDDDDDDDEEEEDDDDDDE 195

 Score = 98 (39.6 bits), Expect = 5.9e-05, P = 5.9e-05
 Identities = 20/66 (30%), Positives = 37/66 (56%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             SA+  F++  R++  + +P    + +   K   E+WK+MS  EK  F + A++ K+ Y++
Sbjct:    14 SAYAYFVKTCREEHNKKNPGVTVNFSEFSKKCSERWKTMSPKEKTKFEDLAKQDKARYDQ 73

Query:   104 NMQDYN 109
              M  YN
Sbjct:    74 EMMHYN 79


>UNIPROTKB|B2RPK0 [details] [associations]
            symbol:HMGB1P1 "Putative high mobility group protein
            B1-like 1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
            "chromosome" evidence=IEA] InterPro:IPR009071 PROSITE:PS00353
            Pfam:PF00505 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
            eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 EMBL:AL160176 UniGene:Hs.131543
            EMBL:BC137482 EMBL:BC137483 IPI:IPI00022796
            ProteinModelPortal:B2RPK0 SMR:B2RPK0 STRING:B2RPK0 PaxDb:B2RPK0
            PRIDE:B2RPK0 GeneCards:GC20M056062 HGNC:HGNC:4993
            neXtProt:NX_B2RPK0 InParanoid:B2RPK0 OrthoDB:EOG4KWJV1
            PhylomeDB:B2RPK0 NextBio:39267 Genevestigator:B2RPK0 Uniprot:B2RPK0
        Length = 211

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 36/101 (35%), Positives = 50/101 (49%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E+  + K  HP   S+  V K  GE W + + D+K P  ++A K K  Y K+
Sbjct:   100 SAFFLFCSEYHPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPGEKKAAKLKEKYEKD 158

Query:   105 MQDYN---KQLADGVNAAEENESDKSKSEVNDEDDEEGSGE 142
             +  Y    K  A      +  +S K K E  DE+DEE   E
Sbjct:   159 IAAYQAKGKPEAAKKGVVKAEKSKKKKEEEEDEEDEEDEEE 199


>UNIPROTKB|P0C6E5 [details] [associations]
            symbol:P0C6E5 "Putative high mobility group protein B3-like
            protein" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
            "chromosome" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
            GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC067852 Pfam:PF09011
            IPI:IPI00888935 ProteinModelPortal:P0C6E5 SMR:P0C6E5 STRING:P0C6E5
            PhosphoSite:P0C6E5 DMDM:205539816 PaxDb:P0C6E5 PRIDE:P0C6E5
            neXtProt:NX_P0C6E5 InParanoid:P0C6E5 PhylomeDB:P0C6E5
            Genevestigator:P0C6E5 Uniprot:P0C6E5
        Length = 187

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 42/134 (31%), Positives = 65/134 (48%)

Query:     6 SKADAVGTDSKLKSKG-ARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPN 64
             +KAD V  D ++K  G A+ GK+                 S FF+F  EF  + K  +P 
Sbjct:    64 AKADKVHYDQEIKDYGPAKGGKKKDPNAPKRPP-------SGFFLFCSEFCPKSKSTNPG 116

Query:    65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY-NKQLADGVNAAEENE 123
                +  V K  GE WK++++ EK P++ +A K K  Y K++  Y +K  +DG     +  
Sbjct:   117 IP-IGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEKDVAVYKSKGKSDGAKGPAKVA 175

Query:   124 SDKSKSEVNDEDDE 137
               K + E  DED+E
Sbjct:   176 QKKVEEE--DEDEE 187

 Score = 104 (41.7 bits), Expect = 9.7e-06, P = 9.7e-06
 Identities = 22/65 (33%), Positives = 39/65 (60%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             SA+  F++  R++ K+ +P    + A   K   E+WK+MS+ EK+ F E A+  K  Y++
Sbjct:    14 SAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAKADKVHYDQ 73

Query:   104 NMQDY 108
              ++DY
Sbjct:    74 EIKDY 78


>UNIPROTKB|F1M607 [details] [associations]
            symbol:F1M607 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
            IPI:IPI00558117 Ensembl:ENSRNOT00000046997 Uniprot:F1M607
        Length = 211

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 36/101 (35%), Positives = 51/101 (50%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+   E+R + K  HP   S+  V +  GE W + + D+K P  E+A K K  Y K+
Sbjct:    96 SAFFLLCSEYRPKIKGEHPG-LSIGDVARKLGEMWNNTAADDKQP-CEKAAKLKEKYEKD 153

Query:   105 MQDYN-KQLADGVN--AAEENESDKSKSEVNDEDDEEGSGE 142
             +  Y  K   D       +  +S K K E +DE+DEE   E
Sbjct:   154 IAAYRAKGKPDAAKKGVVKAEKSKKKKKEEDDEEDEEDEEE 194


>RGD|1559962 [details] [associations]
            symbol:RGD1559962 "similar to High mobility group protein 2
            (HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            REFSEQ:XM_001074365 Ncbi:XP_001074365
        Length = 209

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 33/96 (34%), Positives = 48/96 (50%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E R + K  HP   S+    K  GE W   S  +K P+ ++A K K +Y K+
Sbjct:   100 SAFFLFCSEHRPKIKSEHPG-LSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEEYEKD 158

Query:   105 MQDYN-KQLAD-GVNAAEENESDKSKSEVNDEDDEE 138
             +  Y  K  ++ G          K K+E  DE++EE
Sbjct:   159 IAAYRAKGKSEVGKKGPGRPTGSKKKNEPEDEEEEE 194

 Score = 112 (44.5 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 21/65 (32%), Positives = 40/65 (61%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K  HP++  + A   K   E+WK+MS  EK+ F + A+  K+ Y++
Sbjct:    14 SSYAFFVQTCREEHKNKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDR 73

Query:   104 NMQDY 108
              M++Y
Sbjct:    74 EMKNY 78


>UNIPROTKB|F1NPU8 [details] [associations]
            symbol:HMGB2 "High mobility group protein B2" species:9031
            "Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0000793
            "condensed chromosome" evidence=IEA] [GO:0001938 "positive
            regulation of endothelial cell proliferation" evidence=IEA]
            [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA]
            [GO:0006288 "base-excision repair, DNA ligation" evidence=IEA]
            [GO:0007289 "spermatid nucleus differentiation" evidence=IEA]
            [GO:0008301 "DNA binding, bending" evidence=IEA] [GO:0008584 "male
            gonad development" evidence=IEA] [GO:0019904 "protein domain
            specific binding" evidence=IEA] [GO:0032075 "positive regulation of
            nuclease activity" evidence=IEA] [GO:0042056 "chemoattractant
            activity" evidence=IEA] [GO:0043234 "protein complex" evidence=IEA]
            [GO:0043388 "positive regulation of DNA binding" evidence=IEA]
            [GO:0044212 "transcription regulatory region DNA binding"
            evidence=IEA] [GO:0045648 "positive regulation of erythrocyte
            differentiation" evidence=IEA] [GO:0045654 "positive regulation of
            megakaryocyte differentiation" evidence=IEA] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0048471 "perinuclear
            region of cytoplasm" evidence=IEA] [GO:0048545 "response to steroid
            hormone stimulus" evidence=IEA] [GO:0050786 "RAGE receptor binding"
            evidence=IEA] [GO:0060326 "cell chemotaxis" evidence=IEA]
            [GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0048471 GO:GO:0045892 GO:GO:0005615 GO:GO:0043234
            GO:GO:0005730 GO:GO:0003684 GO:GO:0001938 GO:GO:0045944
            GO:GO:0003700 GO:GO:0048545 GO:GO:0008301 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
            GO:GO:0045648 GO:GO:0045654 GO:GO:0060326 GO:GO:0000793
            GO:GO:0042056 GO:GO:0043388 Pfam:PF09011 GO:GO:0032075
            GeneTree:ENSGT00560000076717 GO:GO:0006288 OMA:KIKNDHP
            IPI:IPI00579203 EMBL:AADN02008951 Ensembl:ENSGALT00000017483
            Uniprot:F1NPU8
        Length = 207

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 34/100 (34%), Positives = 48/100 (48%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E R + K  HP   S+    K  GE W   S  +K P+ ++A K K  Y K+
Sbjct:   100 SAFFLFCSEHRPKIKNDHPG-LSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLAD-GVNAAEENESDKSKSEVNDEDDEEGSGE 142
             +  Y  K  +D G          K K+E  +E++EE   E
Sbjct:   159 IAAYRAKSKSDAGKKGPGRPAGSKKKAEPEEEEEEEEDEE 198

 Score = 112 (44.5 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 21/65 (32%), Positives = 40/65 (61%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP++  + A   +   E+WK+MS  EK  F E A+  K+ Y++
Sbjct:    14 SSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMAKGDKARYDR 73

Query:   104 NMQDY 108
              M++Y
Sbjct:    74 EMKNY 78


>RGD|1594733 [details] [associations]
            symbol:LOC690521 "similar to High mobility group protein 1
            (HMG-1) (High mobility group protein B1) (Amphoterin)
            (Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] REFSEQ:XM_001074673 Ncbi:XP_001074673
        Length = 213

 Score = 132 (51.5 bits), Expect = 7.7e-09, P = 7.7e-09
 Identities = 33/98 (33%), Positives = 46/98 (46%)

Query:    48 FVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQD 107
             F+F  E+R + K  HP   S+  V K  GE W + + D+K P  + A K K  Y K+   
Sbjct:   102 FLFCSEYRPKIKGEHPA-LSIGDVTKKLGEVWTNTASDDKQPCEKMAAKLKEKYEKDTAA 160

Query:   108 YN-KQLADGVN--AAEENESDKSKSEVNDEDDEEGSGE 142
             Y  K   D       +   S K K E +DE+DE+   E
Sbjct:   161 YRAKGKPDAAKKGVVKAERSKKKKEEEDDEEDEDDEEE 198

 Score = 104 (41.7 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A+  K+ Y +
Sbjct:    14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKAMSAKEKGKFEDMAKADKARYER 73

Query:   104 NMQDY 108
              M+ Y
Sbjct:    74 EMKTY 78

 Score = 60 (26.2 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query:   120 EENESDKSKSEVNDEDDEE 138
             EE+E D+ + E  DEDDEE
Sbjct:   190 EEDEDDEEEEEEEDEDDEE 208


>UNIPROTKB|E2QY30 [details] [associations]
            symbol:HMGB2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0071222 "cellular response to
            lipopolysaccharide" evidence=IEA] [GO:0060326 "cell chemotaxis"
            evidence=IEA] [GO:0050786 "RAGE receptor binding" evidence=IEA]
            [GO:0048545 "response to steroid hormone stimulus" evidence=IEA]
            [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0045654 "positive regulation of megakaryocyte differentiation"
            evidence=IEA] [GO:0045648 "positive regulation of erythrocyte
            differentiation" evidence=IEA] [GO:0044212 "transcription
            regulatory region DNA binding" evidence=IEA] [GO:0043388 "positive
            regulation of DNA binding" evidence=IEA] [GO:0043234 "protein
            complex" evidence=IEA] [GO:0042056 "chemoattractant activity"
            evidence=IEA] [GO:0032075 "positive regulation of nuclease
            activity" evidence=IEA] [GO:0019904 "protein domain specific
            binding" evidence=IEA] [GO:0008584 "male gonad development"
            evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
            [GO:0007289 "spermatid nucleus differentiation" evidence=IEA]
            [GO:0006288 "base-excision repair, DNA ligation" evidence=IEA]
            [GO:0005615 "extracellular space" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
            [GO:0001938 "positive regulation of endothelial cell proliferation"
            evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0048471
            GO:GO:0045892 GO:GO:0005615 GO:GO:0043234 GO:GO:0005730
            GO:GO:0003684 GO:GO:0001938 GO:GO:0045944 GO:GO:0003700
            GO:GO:0071222 GO:GO:0048545 GO:GO:0008584 GO:GO:0008301
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0044212 GO:GO:0007289 GO:GO:0045648 GO:GO:0045654
            GO:GO:0060326 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
            Pfam:PF09011 GO:GO:0032075 KO:K11295 GeneTree:ENSGT00560000076717
            GO:GO:0006288 CTD:3148 OMA:KIKNDHP EMBL:AAEX03014309
            RefSeq:XP_543194.2 Ensembl:ENSCAFT00000012535 GeneID:486068
            KEGG:cfa:486068 NextBio:20859918 Uniprot:E2QY30
        Length = 210

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 34/100 (34%), Positives = 48/100 (48%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E R + K  HP   S+    K  GE W   S  +K P+ ++A K K  Y K+
Sbjct:   100 SAFFLFCSEHRPKIKSEHPG-LSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLAD-GVNAAEENESDKSKSEVNDEDDEEGSGE 142
             +  Y  K  ++ G          K K+E  DE++EE   E
Sbjct:   159 IAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEE 198

 Score = 114 (45.2 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
 Identities = 21/65 (32%), Positives = 41/65 (63%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP++  + A   K   E+WK+MS  EK+ F + A+  K+ Y++
Sbjct:    14 SSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDR 73

Query:   104 NMQDY 108
              M++Y
Sbjct:    74 EMKNY 78

 Score = 38 (18.4 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query:   120 EENESDKSKSEVNDEDDE 137
             EE E +    E  +ED+E
Sbjct:   193 EEEEEEDEDDEEEEEDEE 210


>RGD|1564519 [details] [associations]
            symbol:RGD1564519 "similar to High mobility group protein 2
            (HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            REFSEQ:XM_001063065 Ncbi:XP_001063065
        Length = 210

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 33/96 (34%), Positives = 47/96 (48%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E R + K  HP   S+    K  GE W   S  +K P+ ++A K K  Y K+
Sbjct:   100 SAFFLFCSEHRPKIKSEHPG-LSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLAD-GVNAAEENESDKSKSEVNDEDDEE 138
             +  Y  K  ++ G          K K+E  DE++EE
Sbjct:   159 IAAYRAKGKSEVGKKGPGRPTGSKKKNEPEDEEEEE 194

 Score = 113 (44.8 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
 Identities = 21/65 (32%), Positives = 41/65 (63%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP++  + A   K   E+WK+MS  EK+ F + A+  K+ Y++
Sbjct:    14 SSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDR 73

Query:   104 NMQDY 108
              M++Y
Sbjct:    74 EMKNY 78

 Score = 46 (21.3 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
 Identities = 9/18 (50%), Positives = 10/18 (55%)

Query:   120 EENESDKSKSEVNDEDDE 137
             EE E D    E  DED+E
Sbjct:   193 EEEEEDDEDEEEEDEDEE 210


>RGD|69291 [details] [associations]
            symbol:Hmgb2 "high mobility group box 2" species:10116 "Rattus
           norvegicus" [GO:0000793 "condensed chromosome" evidence=ISO;ISS]
           [GO:0001938 "positive regulation of endothelial cell proliferation"
           evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003684
           "damaged DNA binding" evidence=ISO] [GO:0003690 "double-stranded DNA
           binding" evidence=TAS] [GO:0003700 "sequence-specific DNA binding
           transcription factor activity" evidence=ISO] [GO:0005615
           "extracellular space" evidence=ISO] [GO:0005634 "nucleus"
           evidence=ISO;ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
           [GO:0006288 "base-excision repair, DNA ligation" evidence=ISO;ISS]
           [GO:0006357 "regulation of transcription from RNA polymerase II
           promoter" evidence=ISO;ISS] [GO:0007049 "cell cycle" evidence=IEP]
           [GO:0007283 "spermatogenesis" evidence=ISO] [GO:0007289 "spermatid
           nucleus differentiation" evidence=ISO] [GO:0007399 "nervous system
           development" evidence=IDA] [GO:0008289 "lipid binding" evidence=IDA]
           [GO:0008301 "DNA binding, bending" evidence=ISO;ISS] [GO:0008584
           "male gonad development" evidence=ISO] [GO:0019904 "protein domain
           specific binding" evidence=ISO] [GO:0031100 "organ regeneration"
           evidence=IEP] [GO:0031493 "nucleosomal histone binding"
           evidence=IDA] [GO:0032075 "positive regulation of nuclease activity"
           evidence=ISO] [GO:0042056 "chemoattractant activity" evidence=ISO]
           [GO:0043066 "negative regulation of apoptotic process" evidence=ISO]
           [GO:0043234 "protein complex" evidence=ISO] [GO:0043388 "positive
           regulation of DNA binding" evidence=ISO] [GO:0044212 "transcription
           regulatory region DNA binding" evidence=ISO] [GO:0045648 "positive
           regulation of erythrocyte differentiation" evidence=ISO] [GO:0045654
           "positive regulation of megakaryocyte differentiation" evidence=ISO]
           [GO:0045892 "negative regulation of transcription, DNA-dependent"
           evidence=ISO] [GO:0045893 "positive regulation of transcription,
           DNA-dependent" evidence=ISO;IMP] [GO:0045944 "positive regulation of
           transcription from RNA polymerase II promoter" evidence=ISO]
           [GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;ISS]
           [GO:0048545 "response to steroid hormone stimulus" evidence=ISO]
           [GO:0050786 "RAGE receptor binding" evidence=ISO] [GO:0050918
           "positive chemotaxis" evidence=ISO] [GO:0051054 "positive regulation
           of DNA metabolic process" evidence=IMP] [GO:0060326 "cell
           chemotaxis" evidence=ISO] [GO:0071222 "cellular response to
           lipopolysaccharide" evidence=ISO] InterPro:IPR009071
           InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:69291
           GO:GO:0005634 GO:GO:0048471 GO:GO:0045893 GO:GO:0007399
           GO:GO:0031100 GO:GO:0006357 eggNOG:COG5648 GO:GO:0008301
           Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
           GO:GO:0007049 GO:GO:0008289 GO:GO:0003690 GO:GO:0000793
           GO:GO:0051054 GO:GO:0031493 Pfam:PF09011 HOGENOM:HOG000197861
           KO:K11295 GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000
           GO:GO:0006288 CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:D84418
           EMBL:BC078866 EMBL:BC089854 EMBL:BC107455 IPI:IPI00876582
           RefSeq:NP_058883.1 RefSeq:XP_001063065.2 RefSeq:XP_573272.3
           UniGene:Rn.218982 UniGene:Rn.2874 ProteinModelPortal:P52925
           SMR:P52925 STRING:P52925 DNASU:29395 Ensembl:ENSRNOT00000017635
           Ensembl:ENSRNOT00000046874 GeneID:29395 GeneID:498072 KEGG:rno:29395
           KEGG:rno:498072 UCSC:RGD:69291 CTD:498072 InParanoid:P52925
           NextBio:609027 Genevestigator:P52925 GermOnline:ENSRNOG00000013167
           GermOnline:ENSRNOG00000030313 Uniprot:P52925
        Length = 210

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 33/96 (34%), Positives = 47/96 (48%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E R + K  HP   S+    K  GE W   S  +K P+ ++A K K  Y K+
Sbjct:   100 SAFFLFCSEHRPKIKSEHPG-LSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLAD-GVNAAEENESDKSKSEVNDEDDEE 138
             +  Y  K  ++ G          K K+E  DE++EE
Sbjct:   159 IAAYRAKGKSEVGKKGPGRPTGSKKKNEPEDEEEEE 194

 Score = 113 (44.8 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
 Identities = 21/65 (32%), Positives = 41/65 (63%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP++  + A   K   E+WK+MS  EK+ F + A+  K+ Y++
Sbjct:    14 SSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDR 73

Query:   104 NMQDY 108
              M++Y
Sbjct:    74 EMKNY 78

 Score = 46 (21.3 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
 Identities = 9/18 (50%), Positives = 10/18 (55%)

Query:   120 EENESDKSKSEVNDEDDE 137
             EE E D    E  DED+E
Sbjct:   193 EEEEEDDEDEEEEDEDEE 210


>UNIPROTKB|P40673 [details] [associations]
            symbol:HMGB2 "High mobility group protein B2" species:9913
            "Bos taurus" [GO:0048471 "perinuclear region of cytoplasm"
            evidence=ISS] [GO:0000793 "condensed chromosome" evidence=ISS]
            [GO:0008301 "DNA binding, bending" evidence=ISS;IDA] [GO:0006357
            "regulation of transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0006288 "base-excision repair, DNA ligation"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0003684 "damaged DNA binding"
            evidence=IDA] [GO:0033151 "V(D)J recombination" evidence=IDA]
            [GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0042393
            "histone binding" evidence=IDA] [GO:0003697 "single-stranded DNA
            binding" evidence=IDA] [GO:0006265 "DNA topological change"
            evidence=IDA] [GO:0003690 "double-stranded DNA binding"
            evidence=IDA] [GO:0006310 "DNA recombination" evidence=IDA]
            [GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA]
            [GO:0060326 "cell chemotaxis" evidence=IEA] [GO:0050786 "RAGE
            receptor binding" evidence=IEA] [GO:0048545 "response to steroid
            hormone stimulus" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0045892 "negative regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0045654 "positive regulation of megakaryocyte
            differentiation" evidence=IEA] [GO:0045648 "positive regulation of
            erythrocyte differentiation" evidence=IEA] [GO:0044212
            "transcription regulatory region DNA binding" evidence=IEA]
            [GO:0043388 "positive regulation of DNA binding" evidence=IEA]
            [GO:0043234 "protein complex" evidence=IEA] [GO:0042056
            "chemoattractant activity" evidence=IEA] [GO:0032075 "positive
            regulation of nuclease activity" evidence=IEA] [GO:0019904 "protein
            domain specific binding" evidence=IEA] [GO:0008584 "male gonad
            development" evidence=IEA] [GO:0007289 "spermatid nucleus
            differentiation" evidence=IEA] [GO:0005615 "extracellular space"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0001938 "positive
            regulation of endothelial cell proliferation" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0048471 GO:GO:0045892 GO:GO:0005615
            GO:GO:0043234 GO:GO:0005730 GO:GO:0003684 GO:GO:0001938
            GO:GO:0045944 GO:GO:0003700 GO:GO:0006357 GO:GO:0071222
            GO:GO:0048545 GO:GO:0008584 GO:GO:0006338 eggNOG:COG5648
            GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0044212 GO:GO:0007289 GO:GO:0003690
            GO:GO:0003697 GO:GO:0045648 GO:GO:0045654 GO:GO:0060326
            GO:GO:0042393 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
            Pfam:PF09011 GO:GO:0032075 GO:GO:0033151 GO:GO:0006265
            HOGENOM:HOG000197861 KO:K11295 GeneTree:ENSGT00560000076717
            HOVERGEN:HBG009000 GO:GO:0006288 EMBL:BC109755 IPI:IPI00689856
            RefSeq:NP_001032705.1 UniGene:Bt.6397 ProteinModelPortal:P40673
            SMR:P40673 STRING:P40673 PRIDE:P40673 Ensembl:ENSBTAT00000020096
            GeneID:540444 KEGG:bta:540444 CTD:3148 InParanoid:P40673
            OMA:KIKNDHP OrthoDB:EOG4TTGK2 NextBio:20878641 Uniprot:P40673
        Length = 209

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 33/96 (34%), Positives = 47/96 (48%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E R + K  HP   S+    K  GE W   S  +K P+ ++A K K  Y K+
Sbjct:   100 SAFFLFCSEHRPKIKSEHPG-LSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLAD-GVNAAEENESDKSKSEVNDEDDEE 138
             +  Y  K  ++ G          K K+E  DE++EE
Sbjct:   159 IAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEE 194

 Score = 114 (45.2 bits), Expect = 9.9e-07, P = 9.9e-07
 Identities = 21/65 (32%), Positives = 41/65 (63%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP++  + A   K   E+WK+MS  EK+ F + A+  K+ Y++
Sbjct:    14 SSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDR 73

Query:   104 NMQDY 108
              M++Y
Sbjct:    74 EMKNY 78


>UNIPROTKB|P26583 [details] [associations]
            symbol:HMGB2 "High mobility group protein B2" species:9606
            "Homo sapiens" [GO:0007289 "spermatid nucleus differentiation"
            evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
            [GO:0019904 "protein domain specific binding" evidence=IEA]
            [GO:0048545 "response to steroid hormone stimulus" evidence=IEA]
            [GO:0048015 "phosphatidylinositol-mediated signaling" evidence=NAS]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
            evidence=IDA] [GO:0006325 "chromatin organization" evidence=NAS]
            [GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006334
            "nucleosome assembly" evidence=NAS] [GO:0006357 "regulation of
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006288
            "base-excision repair, DNA ligation" evidence=IDA] [GO:0001938
            "positive regulation of endothelial cell proliferation"
            evidence=IDA] [GO:0042056 "chemoattractant activity" evidence=IDA]
            [GO:0060326 "cell chemotaxis" evidence=IDA] [GO:0050786 "RAGE
            receptor binding" evidence=IGI] [GO:0003684 "damaged DNA binding"
            evidence=IDA] [GO:0043234 "protein complex" evidence=IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0003677 "DNA
            binding" evidence=IMP] [GO:0005615 "extracellular space"
            evidence=IDA] [GO:0071222 "cellular response to lipopolysaccharide"
            evidence=IEP] [GO:0051103 "DNA ligation involved in DNA repair"
            evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
            [GO:0003690 "double-stranded DNA binding" evidence=ISS] [GO:0003697
            "single-stranded DNA binding" evidence=ISS] [GO:0032075 "positive
            regulation of nuclease activity" evidence=IDA] [GO:0033151 "V(D)J
            recombination" evidence=ISS] [GO:0044212 "transcription regulatory
            region DNA binding" evidence=IDA] [GO:0045893 "positive regulation
            of transcription, DNA-dependent" evidence=IDA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IDA] [GO:0043388 "positive regulation of DNA
            binding" evidence=IDA] [GO:0045648 "positive regulation of
            erythrocyte differentiation" evidence=IMP] [GO:0045654 "positive
            regulation of megakaryocyte differentiation" evidence=IMP]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
            [GO:0006309 "apoptotic DNA fragmentation" evidence=TAS] [GO:0006915
            "apoptotic process" evidence=TAS] [GO:0006921 "cellular component
            disassembly involved in execution phase of apoptosis" evidence=TAS]
            [GO:0045892 "negative regulation of transcription, DNA-dependent"
            evidence=IDA] [GO:0050918 "positive chemotaxis" evidence=IDA]
            Reactome:REACT_578 InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0048471 GO:GO:0045892
            GO:GO:0005615 GO:GO:0043234 GO:GO:0005654 GO:GO:0003684
            GO:GO:0001938 GO:GO:0045944 GO:GO:0003700 GO:GO:0071222
            GO:GO:0048545 GO:GO:0008584 eggNOG:COG5648 GO:GO:0008301
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0044212 GO:GO:0007289 GO:GO:0003690 GO:GO:0003697
            EMBL:CH471056 GO:GO:0045648 GO:GO:0045654 GO:GO:0048015
            GO:GO:0060326 GO:GO:0006309 GO:GO:0000793 GO:GO:0042056
            GO:GO:0006334 GO:GO:0043388 Pfam:PF09011 GO:GO:0032075
            GO:GO:0033151 GO:GO:0006265 HOGENOM:HOG000197861 KO:K11295
            HOVERGEN:HBG009000 GO:GO:0006288 HPA:HPA003506 GO:GO:0050786
            CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:M83665 EMBL:X62534
            EMBL:BT019782 EMBL:AK311864 EMBL:BC001063 EMBL:BC100019 EMBL:Z17240
            IPI:IPI00219097 PIR:A42425 PIR:S30221 RefSeq:NP_001124160.1
            RefSeq:NP_001124161.1 RefSeq:NP_002120.1 UniGene:Hs.434953
            ProteinModelPortal:P26583 SMR:P26583 IntAct:P26583 MINT:MINT-240190
            STRING:P26583 PhosphoSite:P26583 DMDM:123374 PaxDb:P26583
            PeptideAtlas:P26583 PRIDE:P26583 DNASU:3148 Ensembl:ENST00000296503
            Ensembl:ENST00000438704 Ensembl:ENST00000446922 GeneID:3148
            KEGG:hsa:3148 UCSC:uc003ita.3 GeneCards:GC04M174252 HGNC:HGNC:5000
            MIM:163906 neXtProt:NX_P26583 PharmGKB:PA35091 InParanoid:P26583
            ChiTaRS:HMGB2 GenomeRNAi:3148 NextBio:12476 PMAP-CutDB:P26583
            ArrayExpress:P26583 Bgee:P26583 CleanEx:HS_HMGB2
            Genevestigator:P26583 GermOnline:ENSG00000164104 Uniprot:P26583
        Length = 209

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 33/96 (34%), Positives = 47/96 (48%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E R + K  HP   S+    K  GE W   S  +K P+ ++A K K  Y K+
Sbjct:   100 SAFFLFCSEHRPKIKSEHPG-LSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLAD-GVNAAEENESDKSKSEVNDEDDEE 138
             +  Y  K  ++ G          K K+E  DE++EE
Sbjct:   159 IAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEE 194

 Score = 114 (45.2 bits), Expect = 9.9e-07, P = 9.9e-07
 Identities = 21/65 (32%), Positives = 41/65 (63%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP++  + A   K   E+WK+MS  EK+ F + A+  K+ Y++
Sbjct:    14 SSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDR 73

Query:   104 NMQDY 108
              M++Y
Sbjct:    74 EMKNY 78


>UNIPROTKB|P17741 [details] [associations]
            symbol:HMGB2 "High mobility group protein B2" species:9823
            "Sus scrofa" [GO:0006265 "DNA topological change" evidence=IDA]
            [GO:0003677 "DNA binding" evidence=IDA] [GO:0008301 "DNA binding,
            bending" evidence=ISS;IDA] [GO:0051103 "DNA ligation involved in
            DNA repair" evidence=IDA] [GO:0048471 "perinuclear region of
            cytoplasm" evidence=ISS] [GO:0006357 "regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0000793 "condensed chromosome" evidence=ISS] [GO:0006288
            "base-excision repair, DNA ligation" evidence=ISS]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0048471 GO:GO:0006357 eggNOG:COG5648
            GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011 GO:GO:0006265
            HOGENOM:HOG000197861 KO:K11295 HOVERGEN:HBG009000 GO:GO:0006288
            CTD:3148 OrthoDB:EOG4TTGK2 EMBL:J02895 PIR:A34719
            RefSeq:NP_999228.1 UniGene:Ssc.226 PDB:1J3C PDB:1J3D PDB:1J3X
            PDBsum:1J3C PDBsum:1J3D PDBsum:1J3X ProteinModelPortal:P17741
            SMR:P17741 GeneID:397130 KEGG:ssc:397130 EvolutionaryTrace:P17741
            Uniprot:P17741
        Length = 210

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 34/100 (34%), Positives = 47/100 (47%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E R + K  HP   S+    K  GE W   S  +K P+ ++A K K  Y K+
Sbjct:   100 SAFFLFCSEHRPKIKSEHPG-LSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLAD-GVNAAEENESDKSKSEVNDEDDEEGSGE 142
             +  Y  K   + G          K K+E  DE++EE   E
Sbjct:   159 IAAYRAKGKGEAGKKGPGRPTGSKKKNEPEDEEEEEEEEE 198

 Score = 114 (45.2 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 21/65 (32%), Positives = 41/65 (63%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP++  + A   K   E+WK+MS  EK+ F + A+  K+ Y++
Sbjct:    14 SSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDR 73

Query:   104 NMQDY 108
              M++Y
Sbjct:    74 EMKNY 78


>RGD|1561694 [details] [associations]
            symbol:RGD1561694 "similar to High mobility group protein 2
            (HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            REFSEQ:XM_003752741 Ncbi:XP_003752789
        Length = 209

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 33/96 (34%), Positives = 47/96 (48%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E R + K  HP   S+    K  GE W   S  +K P+ ++A K K  Y K+
Sbjct:   100 SAFFLFCSEHRPKIKSEHPG-LSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLAD-GVNAAEENESDKSKSEVNDEDDEE 138
             +  Y  K  ++ G          K K+E  DE++EE
Sbjct:   159 IAAYRAKGKSEVGKKGPGRPTGSKKKNEPEDEEEEE 194

 Score = 111 (44.1 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 21/65 (32%), Positives = 40/65 (61%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S +  F++  R++ K+ HP++  + A   K   E+WK+MS  EK+ F + A+  K+ Y++
Sbjct:    14 SLYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDR 73

Query:   104 NMQDY 108
              M++Y
Sbjct:    74 EMKNY 78


>UNIPROTKB|F1MF42 [details] [associations]
            symbol:LOC618297 "Uncharacterized protein" species:9913
            "Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02009820
            IPI:IPI00687888 Ensembl:ENSBTAT00000027565 OMA:INTCREE
            Uniprot:F1MF42
        Length = 196

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 33/96 (34%), Positives = 47/96 (48%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E R + K  HP   S+    K  GE W   S  +K P+ ++A K K  Y K+
Sbjct:    89 SAFFLFCSEHRPKIKSEHPG-LSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKD 147

Query:   105 MQDYN-KQLAD-GVNAAEENESDKSKSEVNDEDDEE 138
             +  Y  K  ++ G          K K+E  DE++EE
Sbjct:   148 IAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEE 183

 Score = 103 (41.3 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 19/55 (34%), Positives = 35/55 (63%)

Query:    55 RKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
             R++ K+ HP++  + A   K   E+WK+MS  EK+ F + A+  K+ Y++ M++Y
Sbjct:    13 REEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 67


>MGI|MGI:96157 [details] [associations]
            symbol:Hmgb2 "high mobility group box 2" species:10090 "Mus
            musculus" [GO:0000793 "condensed chromosome" evidence=ISO]
            [GO:0001938 "positive regulation of endothelial cell proliferation"
            evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003684
            "damaged DNA binding" evidence=ISO] [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=ISO]
            [GO:0005615 "extracellular space" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO;IC] [GO:0005694 "chromosome" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006288 "base-excision
            repair, DNA ligation" evidence=ISO] [GO:0006357 "regulation of
            transcription from RNA polymerase II promoter" evidence=ISO;IDA]
            [GO:0007283 "spermatogenesis" evidence=IMP] [GO:0007289 "spermatid
            nucleus differentiation" evidence=IMP] [GO:0007399 "nervous system
            development" evidence=ISO] [GO:0008289 "lipid binding"
            evidence=ISO] [GO:0008301 "DNA binding, bending" evidence=ISO]
            [GO:0008584 "male gonad development" evidence=IMP] [GO:0019904
            "protein domain specific binding" evidence=IPI] [GO:0031493
            "nucleosomal histone binding" evidence=ISO] [GO:0032075 "positive
            regulation of nuclease activity" evidence=ISO] [GO:0042056
            "chemoattractant activity" evidence=ISO] [GO:0043066 "negative
            regulation of apoptotic process" evidence=IMP] [GO:0043234 "protein
            complex" evidence=ISO] [GO:0043388 "positive regulation of DNA
            binding" evidence=ISO;IDA] [GO:0044212 "transcription regulatory
            region DNA binding" evidence=ISO] [GO:0045648 "positive regulation
            of erythrocyte differentiation" evidence=ISO] [GO:0045654 "positive
            regulation of megakaryocyte differentiation" evidence=ISO]
            [GO:0045892 "negative regulation of transcription, DNA-dependent"
            evidence=ISO] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISO;IMP]
            [GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
            [GO:0048545 "response to steroid hormone stimulus" evidence=IMP]
            [GO:0050786 "RAGE receptor binding" evidence=ISO] [GO:0050918
            "positive chemotaxis" evidence=ISO] [GO:0051054 "positive
            regulation of DNA metabolic process" evidence=ISO] [GO:0060326
            "cell chemotaxis" evidence=ISO] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 MGI:MGI:96157 Pfam:PF00505
            GO:GO:0005634 GO:GO:0048471 GO:GO:0045892 GO:GO:0043066
            GO:GO:0005615 GO:GO:0043234 GO:GO:0005730 GO:GO:0003684
            GO:GO:0001938 GO:GO:0045944 GO:GO:0003700 GO:GO:0071222
            GO:GO:0048545 GO:GO:0008584 eggNOG:COG5648 GO:GO:0008301
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0044212 GO:GO:0007289 GO:GO:0045648 GO:GO:0045654
            GO:GO:0060326 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
            Pfam:PF09011 GO:GO:0032075 HOGENOM:HOG000197861 KO:K11295
            GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000 GO:GO:0006288
            CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:X67668 EMBL:Z46757
            EMBL:AF267733 EMBL:AK003773 EMBL:AK008443 EMBL:AK012568
            EMBL:AK135296 EMBL:AK135297 EMBL:AK146212 EMBL:BC002050
            EMBL:BC046759 EMBL:BC083108 IPI:IPI00462291 PIR:S26062 PIR:S54774
            RefSeq:NP_032278.1 UniGene:Mm.279998 UniGene:Mm.470487
            UniGene:Mm.490424 ProteinModelPortal:P30681 SMR:P30681 DIP:DIP-899N
            MINT:MINT-4097539 STRING:P30681 PhosphoSite:P30681 PaxDb:P30681
            PRIDE:P30681 Ensembl:ENSMUST00000067925 GeneID:97165 KEGG:mmu:97165
            UCSC:uc009lsx.2 InParanoid:P30681 NextBio:352589 Bgee:P30681
            CleanEx:MM_HMGB2 Genevestigator:P30681
            GermOnline:ENSMUSG00000054717 Uniprot:P30681
        Length = 210

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 34/100 (34%), Positives = 48/100 (48%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E R + K  HP   S+    K  GE W   S  +K P+ ++A K K  Y K+
Sbjct:   100 SAFFLFCSENRPKIKIEHPG-LSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLAD-GVNAAEENESDKSKSEVNDEDDEEGSGE 142
             +  Y  K  ++ G          K K+E  DE++EE   E
Sbjct:   159 IAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEE 198

 Score = 113 (44.8 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 21/65 (32%), Positives = 41/65 (63%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP++  + A   K   E+WK+MS  EK+ F + A+  K+ Y++
Sbjct:    14 SSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDR 73

Query:   104 NMQDY 108
              M++Y
Sbjct:    74 EMKNY 78


>UNIPROTKB|P26584 [details] [associations]
            symbol:HMGB2 "High mobility group protein B2" species:9031
            "Gallus gallus" [GO:0008301 "DNA binding, bending" evidence=ISS]
            [GO:0006288 "base-excision repair, DNA ligation" evidence=ISS]
            [GO:0000793 "condensed chromosome" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0048471 "perinuclear region of cytoplasm" evidence=ISS]
            [GO:0006357 "regulation of transcription from RNA polymerase II
            promoter" evidence=ISS] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0048471
            GO:GO:0006357 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011
            HOGENOM:HOG000197861 KO:K11295 HOVERGEN:HBG009000 GO:GO:0006288
            CTD:3148 OrthoDB:EOG4TTGK2 EMBL:M83235 EMBL:M80574 IPI:IPI00579203
            PIR:JC1114 PIR:JC1129 RefSeq:NP_990817.1 UniGene:Gga.4061
            ProteinModelPortal:P26584 SMR:P26584 STRING:P26584 PRIDE:P26584
            GeneID:396482 KEGG:gga:396482 eggNOG:NOG320947 InParanoid:P26584
            NextBio:20816521 Uniprot:P26584
        Length = 207

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 33/100 (33%), Positives = 47/100 (47%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E R + K  HP   S+    K  GE W      +K P+ ++A K K  Y K+
Sbjct:   100 SAFFLFCSEHRPKIKNDHPG-LSIGDTAKKLGEMWSEQLAKDKQPYEQKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLAD-GVNAAEENESDKSKSEVNDEDDEEGSGE 142
             +  Y  K  +D G          K K+E  +E++EE   E
Sbjct:   159 IAAYRAKSKSDAGKKGPGRPAGSKKKAEPEEEEEEEEDEE 198

 Score = 112 (44.5 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 21/65 (32%), Positives = 40/65 (61%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP++  + A   +   E+WK+MS  EK  F E A+  K+ Y++
Sbjct:    14 SSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMAKGDKARYDR 73

Query:   104 NMQDY 108
              M++Y
Sbjct:    74 EMKNY 78


>UNIPROTKB|Q9W602 [details] [associations]
            symbol:ssrp1 "FACT complex subunit SSRP1" species:8355
            "Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
            Pfam:PF03531 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
            Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
            GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 InterPro:IPR013719 Pfam:PF08512
            KO:K09272 InterPro:IPR024954 CTD:6749 HOVERGEN:HBG002932
            EMBL:AB004793 EMBL:BC082613 RefSeq:NP_001084164.1 UniGene:Xl.336
            ProteinModelPortal:Q9W602 PRIDE:Q9W602 GeneID:399344
            KEGG:xla:399344 Xenbase:XB-GENE-994299 Uniprot:Q9W602
        Length = 693

 Score = 147 (56.8 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 31/97 (31%), Positives = 56/97 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SA+ +++   R++ K  +P   S+  + K AGE WK+MS D+K  +  RAE+ K DY K 
Sbjct:   546 SAYMLWLNASREKIKSENPGI-SITDLSKKAGEIWKNMSRDKKEEWDRRAEEAKRDYEKA 604

Query:   105 MQDYNKQLADGVNAAEEN-ESDKSKSEVNDEDDEEGS 140
             M++YN       +  E+  + +K K+E +++  ++ S
Sbjct:   605 MKEYNTSAPTEASKKEKKTKGEKKKAETSEKKKQKPS 641


>RGD|1583212 [details] [associations]
            symbol:LOC685091 "similar to High mobility group protein 1
            (HMG-1) (High mobility group protein B1) (Amphoterin)
            (Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] REFSEQ:XM_001062256 Ncbi:XP_001062256
        Length = 203

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 32/94 (34%), Positives = 48/94 (51%)

Query:    48 FVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQD 107
             F+F  + R + K  HP   S+  V K  GE W S   D+K P  ++A K K  Y K++  
Sbjct:   109 FLFCSDHRPKIKGKHPG-LSIGDVAKNLGEMWNSTVMDDKQPSEKKATKLKETYEKDIAA 167

Query:   108 YN-KQLADGVN--AAEENESDKSKSEVNDEDDEE 138
             Y  K   D V     +  +S+K K E ++E++EE
Sbjct:   168 YRAKGKPDAVKKGVVKAEKSEKKKEEKDEEEEEE 201


>UNIPROTKB|E1BIF8 [details] [associations]
            symbol:E1BIF8 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02073284
            IPI:IPI00728960 Ensembl:ENSBTAT00000006714 OMA:RAISEMW
            Uniprot:E1BIF8
        Length = 194

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 38/134 (28%), Positives = 63/134 (47%)

Query:     6 SKADAVGTDSKLKSKG-ARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPN 64
             +KAD V  + ++K  G A+ GK+                 S FF+F  EF  + K  +P 
Sbjct:    63 AKADKVHYNQEMKDYGSAKGGKKDPNAPKRPP--------SGFFLFFSEFCSEIKSTNPG 114

Query:    65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENES 124
               S+  V K  GE W ++S+ +K  +V +  K K  Y K++ DY  +  DG     +   
Sbjct:   115 I-SIGDVAKKLGEMWNNLSDSKKQLYVNKDAKLKK-YEKDVADYKGEF-DGTKGPAKVVQ 171

Query:   125 DKSKSEVNDEDDEE 138
              K + E + E+++E
Sbjct:   172 KKVEEEEDKEEEDE 185

 Score = 105 (42.0 bits), Expect = 8.4e-06, P = 8.4e-06
 Identities = 26/63 (41%), Positives = 35/63 (55%)

Query:    46 AFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNM 105
             AFFV M   RK+ K+      + A   K   E+WK+MS  EK+ F E A+  K  YN+ M
Sbjct:    17 AFFVQM--CRKKHKKTPKVPVNFAEFSKKCSERWKTMSGKEKSTFDEMAKADKVHYNQEM 74

Query:   106 QDY 108
             +DY
Sbjct:    75 KDY 77


>UNIPROTKB|D4A9T3 [details] [associations]
            symbol:D4A9T3 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
            GeneTree:ENSGT00560000076717 IPI:IPI00564375
            Ensembl:ENSRNOT00000044787 Uniprot:D4A9T3
        Length = 184

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 31/85 (36%), Positives = 43/85 (50%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A K K  Y K+
Sbjct:   100 SAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLADGVNAAEENESDKSK 128
             +  Y  K   D        E  KSK
Sbjct:   159 IAAYRAKGKPDAAKKGVVKEK-KSK 182

 Score = 104 (41.7 bits), Expect = 9.1e-06, P = 9.1e-06
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A+  K+ Y +
Sbjct:    14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 73

Query:   104 NMQDY 108
              M+ Y
Sbjct:    74 EMKTY 78


>RGD|1560584 [details] [associations]
            symbol:RGD1560584 "similar to High mobility group protein 1
            (HMG-1)" species:10116 "Rattus norvegicus" [GO:0003674
            "molecular_function" evidence=ND] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
            GeneTree:ENSGT00560000076717 IPI:IPI00559222
            Ensembl:ENSRNOT00000049438 Uniprot:D3ZIU9
        Length = 204

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 30/93 (32%), Positives = 47/93 (50%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P  ++A K K  Y K+
Sbjct:   100 SAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWTNTAVDDKQPCEKKAAKLKEKYEKD 158

Query:   105 MQDYN-KQLADGVNAAEENESDKSKSEVNDEDD 136
             +  Y  K   D        +  + K ++N++ D
Sbjct:   159 IAAYRAKGKPDAAKKGVVKKHCRKKCKINNKLD 191

 Score = 96 (38.9 bits), Expect = 0.00033, P = 0.00033
 Identities = 22/64 (34%), Positives = 36/64 (56%)

Query:    46 AFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             AFFV  +  R++ K+ H N + + +   K   E+WK+MS  EK  F + A+  K+ Y + 
Sbjct:    17 AFFV--QTCREEHKKKHLNASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYERE 74

Query:   105 MQDY 108
             M+ Y
Sbjct:    75 MKTY 78


>UNIPROTKB|F1N1P2 [details] [associations]
            symbol:F1N1P2 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02056400
            IPI:IPI00904552 Ensembl:ENSBTAT00000020361 Uniprot:F1N1P2
        Length = 199

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 40/135 (29%), Positives = 61/135 (45%)

Query:     6 SKADAVGTDSKLKSKG-ARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPN 64
             +KA  +  D ++K  G AR GK+                 S   +F  EF  + K  HP 
Sbjct:    64 AKAYKMHYDQEMKDYGPARGGKKKDPKAPKRLP-------SGCLLFCSEFHPKIKSTHPG 116

Query:    65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ-LADGVNAAEENE 123
               S+  V K  GE W ++S+ EK P++ +A K K  Y K+  D+  +   DG     +  
Sbjct:   117 I-SIRDVAKKLGEMWNNLSDSEKQPYINKAAKLKK-YEKDAADHKSRGKFDGTKGPAK-V 173

Query:   124 SDKSKSEVNDEDDEE 138
             + K   E + ED+EE
Sbjct:   174 AGKMVEEEDKEDEEE 188

 Score = 107 (42.7 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
 Identities = 28/65 (43%), Positives = 37/65 (56%)

Query:    46 AFFVFM--EEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             AFFV M  EE +K+  E  P N   A   K   E+WK+MS  EK+ F E A+  K  Y++
Sbjct:    17 AFFVQMCREEHKKKNSEV-PVN--FAEFSKKCSERWKTMSRKEKSKFDEMAKAYKMHYDQ 73

Query:   104 NMQDY 108
              M+DY
Sbjct:    74 EMKDY 78

 Score = 33 (16.7 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
 Identities = 10/43 (23%), Positives = 17/43 (39%)

Query:   100 DYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEGSGE 142
             D  K + +    L+D       N++ K K    D  D +  G+
Sbjct:   121 DVAKKLGEMWNNLSDSEKQPYINKAAKLKKYEKDAADHKSRGK 163


>GENEDB_PFALCIPARUM|PFL0145c [details] [associations]
            symbol:PFL0145c "high mobility group protein"
            species:5833 "Plasmodium falciparum" [GO:0005634 "nucleus"
            evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
            [GO:0000785 "chromatin" evidence=ISS] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005634 GO:GO:0000785 GO:GO:0003682
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            EMBL:AE014188 HOGENOM:HOG000197861 HSSP:P11632 OMA:FFANDNR
            GenomeReviews:AE014188_GR RefSeq:XP_001350438.1
            ProteinModelPortal:Q8I616 EnsemblProtists:PFL0145c:mRNA
            GeneID:811082 KEGG:pfa:PFL0145c EuPathDB:PlasmoDB:PF3D7_1202900
            ProtClustDB:PTZ00199 Uniprot:Q8I616
        Length = 97

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 27/65 (41%), Positives = 37/65 (56%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             SA+  F +E R +     P  +K VATVGK  GE W  + E EKAPF ++A++ K  Y K
Sbjct:    26 SAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEAWNKLGEKEKAPFEKKAQEDKLRYEK 85

Query:   104 NMQDY 108
                +Y
Sbjct:    86 EKAEY 90


>UNIPROTKB|Q8I616 [details] [associations]
            symbol:HMGB1 "High mobility group protein" species:36329
            "Plasmodium falciparum 3D7" [GO:0000785 "chromatin" evidence=ISS]
            [GO:0003682 "chromatin binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            GO:GO:0000785 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AE014188 HOGENOM:HOG000197861
            HSSP:P11632 OMA:FFANDNR GenomeReviews:AE014188_GR
            RefSeq:XP_001350438.1 ProteinModelPortal:Q8I616
            EnsemblProtists:PFL0145c:mRNA GeneID:811082 KEGG:pfa:PFL0145c
            EuPathDB:PlasmoDB:PF3D7_1202900 ProtClustDB:PTZ00199 Uniprot:Q8I616
        Length = 97

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 27/65 (41%), Positives = 37/65 (56%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             SA+  F +E R +     P  +K VATVGK  GE W  + E EKAPF ++A++ K  Y K
Sbjct:    26 SAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEAWNKLGEKEKAPFEKKAQEDKLRYEK 85

Query:   104 NMQDY 108
                +Y
Sbjct:    86 EKAEY 90


>UNIPROTKB|B6ZLK1 [details] [associations]
            symbol:SSRP1 "Structure-specific recognition protein 1"
            species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887
            Pfam:PF00505 Pfam:PF03531 GO:GO:0005634 GO:GO:0005737
            Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
            InterPro:IPR024954 OMA:PVEVKKG IPI:IPI00582237 UniGene:Gga.2985
            HOVERGEN:HBG002932 EMBL:AADN02050757 EMBL:AADN02050758
            EMBL:AB465209 STRING:B6ZLK1 Ensembl:ENSGALT00000012159
            Ensembl:ENSGALT00000038738 Uniprot:B6ZLK1
        Length = 706

 Score = 141 (54.7 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 32/99 (32%), Positives = 59/99 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SA+ +++   R++ K  HP   S+  + K AGE WK+MS+++K  +  +AE  K DY K 
Sbjct:   550 SAYMLWLNANREKIKSDHPGI-SITDLSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKA 608

Query:   105 MQDYNKQLADGVNAAEENESDKSKSEVNDEDDE-EGSGE 142
             M++Y+     G N +E ++ ++SK +   ++ + +G GE
Sbjct:   609 MKEYSV----G-NKSESSKMERSKKKKKKQEKQMKGKGE 642


>UNIPROTKB|Q04678 [details] [associations]
            symbol:SSRP1 "FACT complex subunit SSRP1" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
            "DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
            GO:GO:0005694 GO:GO:0005730 GO:GO:0006355 Gene3D:2.30.29.30
            InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165
            KO:K09272 InterPro:IPR024954 HOGENOM:HOG000180790 EMBL:AJ719641
            EMBL:L08815 EMBL:D14315 IPI:IPI00582237 PIR:S78050
            RefSeq:NP_001005796.1 UniGene:Gga.2985 ProteinModelPortal:Q04678
            STRING:Q04678 PRIDE:Q04678 GeneID:396509 KEGG:gga:396509 CTD:6749
            HOVERGEN:HBG002932 InParanoid:Q04678 OrthoDB:EOG41VK2K
            NextBio:20816548 Uniprot:Q04678
        Length = 706

 Score = 141 (54.7 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 32/99 (32%), Positives = 59/99 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SA+ +++   R++ K  HP   S+  + K AGE WK+MS+++K  +  +AE  K DY K 
Sbjct:   550 SAYMLWLNANREKIKSDHPGI-SITDLSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKA 608

Query:   105 MQDYNKQLADGVNAAEENESDKSKSEVNDEDDE-EGSGE 142
             M++Y+     G N +E ++ ++SK +   ++ + +G GE
Sbjct:   609 MKEYSV----G-NKSESSKMERSKKKKKKQEKQMKGKGE 642


>UNIPROTKB|E9PES6 [details] [associations]
            symbol:HMGB3 "High mobility group protein B3" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00411540
            ProteinModelPortal:E9PES6 SMR:E9PES6 Ensembl:ENST00000430118
            ArrayExpress:E9PES6 Bgee:E9PES6 Uniprot:E9PES6
        Length = 153

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 32/97 (32%), Positives = 48/97 (49%)

Query:     6 SKADAVGTDSKLKSKG-ARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPN 64
             +KAD V  D ++K  G A+ GK+                 S FF+F  EFR + K  +P 
Sbjct:    64 AKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPP------SGFFLFCSEFRPKIKSTNPG 117

Query:    65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDY 101
               S+  V K  GE W ++++ EK P++ +A K K  Y
Sbjct:   118 I-SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKY 153

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 23/65 (35%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             SA+  F++  R++ K+ +P    + A   K   E+WK+MS  EK+ F E A+  K  Y++
Sbjct:    14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73

Query:   104 NMQDY 108
              M+DY
Sbjct:    74 EMKDY 78


>TAIR|locus:2136103 [details] [associations]
            symbol:3xHMG-box1 "3xHigh Mobility Group-box1"
            species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
            evidence=ISM] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISS] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
            EMBL:AL161531 GO:GO:0003677 GO:GO:0003700 eggNOG:COG5648
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            EMBL:AF080120 EMBL:AL049876 HSSP:P07155 EMBL:AY133687 EMBL:AJ630485
            EMBL:AY568657 IPI:IPI00533286 PIR:T01926 PIR:T08187
            RefSeq:NP_192846.1 UniGene:At.33587 ProteinModelPortal:Q9T012
            SMR:Q9T012 EnsemblPlants:AT4G11080.1 GeneID:826709
            KEGG:ath:AT4G11080 TAIR:At4g11080 HOGENOM:HOG000238964
            InParanoid:Q9T012 KO:K09273 OMA:CKDQWNE PhylomeDB:Q9T012
            ProtClustDB:CLSN2686000 Genevestigator:Q9T012 Uniprot:Q9T012
        Length = 446

 Score = 136 (52.9 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 29/84 (34%), Positives = 48/84 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SA+ ++  E R   K     NKSV  V K AGE+WK++SE++KAP+ + A+K K  Y + 
Sbjct:   251 SAYLIYANERRAALKG---ENKSVIEVAKMAGEEWKNLSEEKKAPYDQMAKKNKEIYLQE 307

Query:   105 MQDYNKQLADGVNAAEENESDKSK 128
             M+ Y +   +   + ++ E +  K
Sbjct:   308 MEGYKRTKEEEAMSQKKEEEEFMK 331

 Score = 104 (41.7 bits), Expect = 6.4e-05, P = 6.4e-05
 Identities = 21/66 (31%), Positives = 36/66 (54%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             S++F+F ++ RK   E HP   + +TV      KW  + E+EK  +  +A +    Y K 
Sbjct:   377 SSYFLFCKDARKSVLEEHPGINN-STVTAHISLKWMELGEEEKQVYNSKAAELMEAYKKE 435

Query:   105 MQDYNK 110
             +++YNK
Sbjct:   436 VEEYNK 441


>TAIR|locus:2128504 [details] [associations]
            symbol:3xHMG-box2 "3xHigh Mobility Group-box2"
            species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
            evidence=ISM] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISS] [GO:0003677 "DNA
            binding" evidence=IDA] [GO:0000226 "microtubule cytoskeleton
            organization" evidence=RCA] [GO:0000911 "cytokinesis by cell plate
            formation" evidence=RCA] [GO:0006084 "acetyl-CoA metabolic process"
            evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
            [GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0016572
            "histone phosphorylation" evidence=RCA] [GO:0042127 "regulation of
            cell proliferation" evidence=RCA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
            GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 EMBL:AL161560 EMBL:AL035394 HSSP:P07155
            HOGENOM:HOG000238964 KO:K09273 ProtClustDB:CLSN2686000
            EMBL:AY074353 EMBL:AY096398 EMBL:AY125491 IPI:IPI00533790
            PIR:T05612 RefSeq:NP_194111.1 UniGene:At.2572 UniGene:At.71059
            ProteinModelPortal:Q9SUP7 SMR:Q9SUP7 STRING:Q9SUP7 PaxDb:Q9SUP7
            PRIDE:Q9SUP7 EnsemblPlants:AT4G23800.1 GeneID:828480
            KEGG:ath:AT4G23800 TAIR:At4g23800 eggNOG:NOG327891
            InParanoid:Q9SUP7 OMA:FCNERRA PhylomeDB:Q9SUP7
            Genevestigator:Q9SUP7 Uniprot:Q9SUP7
        Length = 456

 Score = 135 (52.6 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 29/84 (34%), Positives = 48/84 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAF V+  E R   +E    NKSV  V K  GE+WK++S+ +KAP+ + A+K K  Y + 
Sbjct:   260 SAFLVYANERRAALRE---ENKSVVEVAKITGEEWKNLSDKKKAPYEKVAKKNKETYLQA 316

Query:   105 MQDYNKQLADGVNAAEENESDKSK 128
             M++Y +   +   + ++ E +  K
Sbjct:   317 MEEYKRTKEEEALSQKKEEEELLK 340

 Score = 116 (45.9 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 25/69 (36%), Positives = 39/69 (56%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             S++F+F ++ RK+  E  P   + ATV      KWK +SE+EK  +  +A K    Y K 
Sbjct:   384 SSYFLFSKDERKKLTEERPGTNN-ATVTALISLKWKELSEEEKQVYNGKAAKLMEAYKKE 442

Query:   105 MQDYNKQLA 113
             ++ YNK+ A
Sbjct:   443 VEAYNKKSA 451


>UNIPROTKB|J9P699 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9615
            "Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
            EMBL:AAEX03014229 EMBL:AAEX03014230 Ensembl:ENSCAFT00000046727
            Uniprot:J9P699
        Length = 196

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 24/59 (40%), Positives = 34/59 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             SAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A K K  Y K
Sbjct:   100 SAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 157

 Score = 104 (41.7 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A+  K+ Y +
Sbjct:    14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 73

Query:   104 NMQDY 108
              M+ Y
Sbjct:    74 EMKTY 78


>UNIPROTKB|Q5T7C4 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 HOVERGEN:HBG009000 EMBL:AL353648 UniGene:Hs.434102
            UniGene:Hs.593339 UniGene:Hs.596078 UniGene:Hs.741195
            HGNC:HGNC:4983 ChiTaRS:HMGB1 EMBL:AL138681 IPI:IPI00644653
            SMR:Q5T7C4 Ensembl:ENST00000326004 Ensembl:ENST00000399489
            UCSC:uc001usv.3 Uniprot:Q5T7C4
        Length = 158

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 24/59 (40%), Positives = 34/59 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             SAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A K K  Y K
Sbjct:   100 SAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 157

 Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A+  K+ Y +
Sbjct:    14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 73

Query:   104 NMQDY 108
              M+ Y
Sbjct:    74 EMKTY 78


>UNIPROTKB|D4A535 [details] [associations]
            symbol:D4A535 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
            IPI:IPI00567139 Ensembl:ENSRNOT00000049646 Uniprot:D4A535
        Length = 204

 Score = 124 (48.7 bits), Expect = 5.6e-08, P = 5.6e-08
 Identities = 30/98 (30%), Positives = 48/98 (48%)

Query:    48 FVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQD 107
             F+F  E+  + K+ HP   S+  V K  GE W + + ++K P+ + A K K    K++  
Sbjct:    97 FLFCSEYCPKIKDEHPG-LSIGDVTKKLGETWSNTAVNDKQPYEKEAAKLKEKCEKDIAA 155

Query:   108 YN-KQLADGVN--AAEENESDKSKSEVNDEDDEEGSGE 142
             Y  K   D       +  +S + K E +DE+DEE   E
Sbjct:   156 YRAKGKPDAARKGVVKAEKSKEKKEEKDDEEDEEDEEE 193


>FB|FBgn0010228 [details] [associations]
            symbol:HmgZ "HMG protein Z" species:7227 "Drosophila
            melanogaster" [GO:0003677 "DNA binding" evidence=NAS] [GO:0005634
            "nucleus" evidence=NAS] InterPro:IPR009071 Pfam:PF00505
            EMBL:AE013599 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            eggNOG:NOG320947 GeneTree:ENSGT00700000104547 EMBL:X71139
            EMBL:AY113439 PIR:S41765 RefSeq:NP_726106.1 RefSeq:NP_726107.1
            UniGene:Dm.20604 ProteinModelPortal:Q06943 SMR:Q06943 PaxDb:Q06943
            PRIDE:Q06943 EnsemblMetazoa:FBtr0071673 EnsemblMetazoa:FBtr0071674
            GeneID:37480 KEGG:dme:Dmel_CG17921 CTD:37480 FlyBase:FBgn0010228
            InParanoid:Q06943 OMA:EANGGTD OrthoDB:EOG4W0VWS PhylomeDB:Q06943
            ChiTaRS:HmgZ GenomeRNAi:37480 NextBio:803858 Bgee:Q06943
            GermOnline:CG17921 Uniprot:Q06943
        Length = 111

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 30/104 (28%), Positives = 55/104 (52%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SA+ +++ E R+Q K+ +P +K V  + K  GE W+ + +  K  + ++A K K +YNK 
Sbjct:    11 SAYMLWLNETREQIKKDNPGSK-VTDIAKRGGELWRGLKD--KTEWEQKAIKMKEEYNKA 67

Query:   105 MQDY--NKQLADGV----NAAEENESDKSKSEVNDEDDEEGSGE 142
             +++Y  N     G       A    + K+K + + E++EE   E
Sbjct:    68 VKEYEANGGTDSGAPKKRKKAAAKPAKKAKKKESSEEEEEDESE 111


>UNIPROTKB|F1LVZ2 [details] [associations]
            symbol:F1LVZ2 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
            IPI:IPI00561233 Ensembl:ENSRNOT00000040837 Uniprot:F1LVZ2
        Length = 199

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 38/102 (37%), Positives = 49/102 (48%)

Query:    46 AFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNM 105
             + F F  E+  Q K  HP   S+  V K  GE W S   D K P+ + A K K  Y K++
Sbjct:    89 SLFSFCSEY-PQIKGEHPG-LSIGDVAKKLGEMWNSTDTD-KQPYGKMAAKLKEKYEKDI 145

Query:   106 QDYN-KQLAD----GVNAAEENESDKSKSEVNDEDDEEGSGE 142
               Y  K   D    GV  AE+  S K K E +DE+D+E   E
Sbjct:   146 AAYRAKGKPDTAKKGVVKAEK--SKKKKEEEDDEEDKEDEEE 185


>UNIPROTKB|F1M4J9 [details] [associations]
            symbol:F1M4J9 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 IPI:IPI00562835
            Ensembl:ENSRNOT00000051890 Uniprot:F1M4J9
        Length = 196

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 29/92 (31%), Positives = 46/92 (50%)

Query:    48 FVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQD 107
             F+F   +  + K  HP+  S+  V K  G  W + +ED+K P  ++A K K  + K++  
Sbjct:    89 FLFCSRYHSKTKGEHPD-LSIGDVAKKLGLMWNNTAEDDKQPIKKKAFKLKEKFEKDIAY 147

Query:   108 YNKQLADGVN-AAEENESDKSKSEVNDEDDEE 138
               K+   G     +   S K K E +DE+DEE
Sbjct:   148 RAKENNAGKREVVKAKRSKKKKVEEDDEEDEE 179


>SGD|S000004676 [details] [associations]
            symbol:ABF2 "Mitochondrial DNA-binding protein" species:4932
            "Saccharomyces cerevisiae" [GO:0005739 "mitochondrion"
            evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0090139
            "mitochondrial DNA packaging" evidence=IMP] [GO:0000001
            "mitochondrion inheritance" evidence=IMP] [GO:0000002
            "mitochondrial genome maintenance" evidence=IMP] [GO:0003677 "DNA
            binding" evidence=IEA;IDA] [GO:0000262 "mitochondrial chromosome"
            evidence=IDA] [GO:0008301 "DNA binding, bending" evidence=IDA]
            [GO:0042645 "mitochondrial nucleoid" evidence=IDA]
            InterPro:IPR009071 SGD:S000004676 Pfam:PF00505 GO:GO:0005634
            EMBL:M73753 EMBL:AJ223169 EMBL:Z48952 EMBL:AY557967 EMBL:BK006946
            PIR:A41302 RefSeq:NP_013788.1 ProteinModelPortal:Q02486 SMR:Q02486
            DIP:DIP-5492N IntAct:Q02486 MINT:MINT-505363 STRING:Q02486
            PaxDb:Q02486 PeptideAtlas:Q02486 EnsemblFungi:YMR072W GeneID:855094
            KEGG:sce:YMR072W CYGD:YMR072w eggNOG:COG5648
            GeneTree:ENSGT00680000100562 OMA:FHESSKP OrthoDB:EOG483HF0
            NextBio:978405 Genevestigator:Q02486 GermOnline:YMR072W
            GO:GO:0000262 GO:GO:0008301 GO:GO:0090139 GO:GO:0000001
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Uniprot:Q02486
        Length = 183

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 21/68 (30%), Positives = 44/68 (64%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SA+F+++++ R QF + +P  +  A + K AGEKW+++  D K  ++   +K  S+Y K 
Sbjct:    48 SAYFLYLQDHRSQFVKENPTLRP-AEISKIAGEKWQNLEADIKEKYISERKKLYSEYQKA 106

Query:   105 MQDYNKQL 112
              ++++++L
Sbjct:   107 KKEFDEKL 114


>UNIPROTKB|F1LY72 [details] [associations]
            symbol:F1LY72 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
            IPI:IPI00568202 Ensembl:ENSRNOT00000048758 Uniprot:F1LY72
        Length = 203

 Score = 122 (48.0 bits), Expect = 9.7e-08, P = 9.7e-08
 Identities = 29/92 (31%), Positives = 46/92 (50%)

Query:    48 FVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQD 107
             F+F   +  + K  HP+  S+  V K  G  W + +ED+K P  ++A K K  + K++  
Sbjct:    89 FLFCSRYHSKTKGEHPD-LSIGDVAKKLGLMWNNTAEDDKQPIKKKAFKLKEKFEKDIAY 147

Query:   108 YNKQLADGVN-AAEENESDKSKSEVNDEDDEE 138
               K+   G     +   S K K E +DE+DEE
Sbjct:   148 RAKENNAGKREVVKAKRSKKKKVEEDDEEDEE 179


>UNIPROTKB|F1LZG8 [details] [associations]
            symbol:F1LZG8 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 IPI:IPI00560402
            Ensembl:ENSRNOT00000043102 Uniprot:F1LZG8
        Length = 203

 Score = 122 (48.0 bits), Expect = 9.7e-08, P = 9.7e-08
 Identities = 29/92 (31%), Positives = 46/92 (50%)

Query:    48 FVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQD 107
             F+F   +  + K  HP+  S+  V K  G  W + +ED+K P  ++A K K  + K++  
Sbjct:    89 FLFCSRYHSKTKGEHPD-LSIGDVAKKLGLMWNNTAEDDKQPIKKKAFKLKEKFEKDIAY 147

Query:   108 YNKQLADGVN-AAEENESDKSKSEVNDEDDEE 138
               K+   G     +   S K K E +DE+DEE
Sbjct:   148 RAKENNAGKREVVKAKRSKKKKVEEDDEEDEE 179


>ZFIN|ZDB-GENE-041008-209 [details] [associations]
            symbol:ssrp1b "structure specific recognition
            protein 1b" species:7955 "Danio rerio" [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR009071
            InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
            ZFIN:ZDB-GENE-041008-209 GO:GO:0005634 Gene3D:2.30.29.30
            InterPro:IPR011993 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
            InterPro:IPR013719 Pfam:PF08512 InterPro:IPR024954 EMBL:BX511158
            IPI:IPI00502576 PRIDE:F6NLJ7 Ensembl:ENSDART00000131296 Bgee:F6NLJ7
            Uniprot:F6NLJ7
        Length = 703

 Score = 130 (50.8 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 27/97 (27%), Positives = 54/97 (55%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SA+ +++   R + K  +P   S+  + K AGE WK + +D+K  +  +AE+ K +Y++ 
Sbjct:   548 SAYMLWLNSSRDRIKSENPGI-SITEISKKAGEMWKQLGKDKKEEWDGKAEEAKKEYDRA 606

Query:   105 MQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEGSG 141
             M++Y ++   G + + + E  K +   N+E  +  SG
Sbjct:   607 MREY-RESGGGSSGSSKKERKKKRGR-NEEKRKRKSG 641


>WB|WBGene00001974 [details] [associations]
            symbol:hmg-4 species:6239 "Caenorhabditis elegans"
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP] [GO:0040011
            "locomotion" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            [GO:0040010 "positive regulation of growth rate" evidence=IMP]
            [GO:0007276 "gamete generation" evidence=IMP] InterPro:IPR009071
            InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
            GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
            GO:GO:0005694 GO:GO:0002119 GO:GO:0006355 Gene3D:2.30.29.30
            InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            GO:GO:0040011 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0040035 GO:GO:0007276
            EMBL:FO081094 GeneTree:ENSGT00700000104547 InterPro:IPR013719
            Pfam:PF08512 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
            HOGENOM:HOG000180790 OMA:PVEVKKG PIR:T16908 RefSeq:NP_498633.1
            ProteinModelPortal:P41848 SMR:P41848 DIP:DIP-26608N
            MINT:MINT-1083096 STRING:P41848 PaxDb:P41848
            EnsemblMetazoa:T20B12.8 GeneID:176052 KEGG:cel:CELE_T20B12.8
            UCSC:T20B12.8 CTD:176052 WormBase:T20B12.8 InParanoid:P41848
            NextBio:890908 Uniprot:P41848
        Length = 697

 Score = 129 (50.5 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 29/79 (36%), Positives = 44/79 (55%)

Query:    50 FMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109
             +M+ F     E   +  SVA V K  G KWK+MS D+K  + E+AE+ KS Y K M++Y 
Sbjct:   563 YMQWFLASRNELKEDGDSVADVAKKGGAKWKTMSSDDKKKWEEKAEEDKSRYEKEMKEYR 622

Query:   110 KQLADGVNAAEENESDKSK 128
             K      ++++ + S  SK
Sbjct:   623 KN-GPPSSSSKPSSSKTSK 640


>FB|FBgn0004362 [details] [associations]
            symbol:HmgD "High mobility group protein D" species:7227
            "Drosophila melanogaster" [GO:0000790 "nuclear chromatin"
            evidence=IDA] [GO:0006325 "chromatin organization" evidence=IDA]
            [GO:0003680 "AT DNA binding" evidence=IDA] [GO:0008301 "DNA
            binding, bending" evidence=IDA;NAS] [GO:0007517 "muscle organ
            development" evidence=IMP] [GO:0048813 "dendrite morphogenesis"
            evidence=IMP] InterPro:IPR009071 Pfam:PF00505 EMBL:AE013599
            GO:GO:0005634 GO:GO:0005694 GO:GO:0008301 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0048813
            GO:GO:0007517 GO:GO:0006325 GO:GO:0003680 eggNOG:NOG320947
            EMBL:M77023 EMBL:X71138 EMBL:AM294353 EMBL:AM294354 EMBL:AM294355
            EMBL:AM294356 EMBL:AM294357 EMBL:AM294358 EMBL:AM294359
            EMBL:AM294360 EMBL:AM294361 EMBL:AM294362 EMBL:AM294363
            EMBL:AY118333 PIR:A44382 RefSeq:NP_001163244.1 RefSeq:NP_726109.1
            RefSeq:NP_726110.1 UniGene:Dm.7318 PDB:1E7J PDB:1HMA PDB:1QRV
            PDB:3NM9 PDBsum:1E7J PDBsum:1HMA PDBsum:1QRV PDBsum:3NM9
            ProteinModelPortal:Q05783 SMR:Q05783 DIP:DIP-22805N IntAct:Q05783
            MINT:MINT-843935 STRING:Q05783 PaxDb:Q05783 PRIDE:Q05783
            EnsemblMetazoa:FBtr0071708 EnsemblMetazoa:FBtr0071709
            EnsemblMetazoa:FBtr0301410 GeneID:37481 KEGG:dme:Dmel_CG17950
            CTD:37481 FlyBase:FBgn0004362 GeneTree:ENSGT00700000104547
            InParanoid:Q05783 OMA:WRAMSEQ OrthoDB:EOG4TX98R PhylomeDB:Q05783
            ChiTaRS:HmgD EvolutionaryTrace:Q05783 GenomeRNAi:37481
            NextBio:803865 Bgee:Q05783 GermOnline:CG17950 Uniprot:Q05783
        Length = 112

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 31/105 (29%), Positives = 56/105 (53%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SA+ +++   R+  K  +P  K V  V K  GE W++M +  K+ +  +A K K DY++ 
Sbjct:    10 SAYMLWLNSARESIKRENPGIK-VTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRA 66

Query:   105 MQDYN----KQLADGVNAAEENE-----SDKSKSEVNDEDDEEGS 140
             ++++        A+G  A +  +     + KSK E +DEDD++ S
Sbjct:    67 VKEFEANGGSSAANGGGAKKRAKPAKKVAKKSKKEESDEDDDDES 111


>POMBASE|SPAC57A10.09c [details] [associations]
            symbol:nhp6 "High-mobility group non-histone chromatin
            protein (predicted)" species:4896 "Schizosaccharomyces pombe"
            [GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
            binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=ISO]
            [GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006359
            "regulation of transcription from RNA polymerase III promoter"
            evidence=ISO] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISO] InterPro:IPR009071
            PomBase:SPAC57A10.09c Pfam:PF00505 GO:GO:0005829 EMBL:CU329670
            GenomeReviews:CU329670_GR GO:GO:0033554 GO:GO:0003677 GO:GO:0006281
            GO:GO:0045944 GO:GO:0006351 GO:GO:0006338 eggNOG:COG5648
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0000790 GO:GO:0006334 GO:GO:0006359 HOGENOM:HOG000197861
            OMA:LANPNNK OrthoDB:EOG4S7P0P PIR:T38936 RefSeq:NP_593314.1
            ProteinModelPortal:P87057 STRING:P87057
            EnsemblFungi:SPAC57A10.09c.1 GeneID:2542878 KEGG:spo:SPAC57A10.09c
            NextBio:20803918 Uniprot:P87057
        Length = 108

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 22/71 (30%), Positives = 42/71 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAF  F  E R++ K  +P+  +   +G   G++WK ++  E+ P+ E+A + K  Y + 
Sbjct:    21 SAFMFFSIENREKMKTDNPD-ATFGQLGSLLGKRWKELTSTEREPYEEKARQDKERYERE 79

Query:   105 MQDYNKQLADG 115
              ++Y+ +LA+G
Sbjct:    80 RKEYDTKLANG 90


>TAIR|locus:505006631 [details] [associations]
            symbol:AT5G23405 "AT5G23405" species:3702 "Arabidopsis
            thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0006333 "chromatin assembly or
            disassembly" evidence=RCA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            EMBL:AB018110 EMBL:AY052244 EMBL:BT020349 IPI:IPI00546033
            IPI:IPI00547115 RefSeq:NP_568430.2 RefSeq:NP_851063.1
            UniGene:At.26423 ProteinModelPortal:Q941D1 SMR:Q941D1 IntAct:Q941D1
            STRING:Q941D1 EnsemblPlants:AT5G23405.1 GeneID:832406
            KEGG:ath:AT5G23405 TAIR:At5g23405 eggNOG:NOG291653
            HOGENOM:HOG000242532 InParanoid:Q941D1 OMA:RMHICYA PhylomeDB:Q941D1
            ProtClustDB:CLSN2680197 Genevestigator:Q941D1 Uniprot:Q941D1
        Length = 149

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 29/77 (37%), Positives = 42/77 (54%)

Query:    47 FFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQ 106
             F VFM  FRK F+  + N   V    K   E WKSM+EDEK  ++++A    +D     +
Sbjct:    70 FAVFMNHFRKSFRTDY-NGALVKEGSKIGWEMWKSMTEDEKKDYLDKA----ADEEDEDE 124

Query:   107 DYNKQLADGVNAAEENE 123
             D  ++ AD  + AE+NE
Sbjct:   125 DTVEEQADDSDDAEDNE 141


>ZFIN|ZDB-GENE-031118-9 [details] [associations]
            symbol:ssrp1a "structure specific recognition protein
            1a" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
            Pfam:PF03531 ZFIN:ZDB-GENE-031118-9 GO:GO:0005634 Gene3D:2.30.29.30
            InterPro:IPR011993 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
            InterPro:IPR013719 Pfam:PF08512 InterPro:IPR024954 EMBL:BX510356
            IPI:IPI00487997 Ensembl:ENSDART00000137795 ArrayExpress:F1QEB4
            Bgee:F1QEB4 Uniprot:F1QEB4
        Length = 705

 Score = 127 (49.8 bits), Expect = 4.1e-07, P = 4.1e-07
 Identities = 32/107 (29%), Positives = 55/107 (51%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SA+ +++   R++ K  +P   S+  + K AGE WK + +D+K  + ++AE+ K  Y K 
Sbjct:   551 SAYMLWLNGNRERIKSENPGI-SITEISKKAGEMWKQLGKDKKEEWDKKAEEAKRQYEKA 609

Query:   105 MQDYNKQLADGVNAAEENESDKS-------KSEVNDEDDEEGSGEVF 144
             M++Y K+   G  AA + +  K        KS    E  +EG  + F
Sbjct:   610 MKEY-KESGGGAAAATKEKKKKGGKVEAKKKSGGEKEKKKEGGNDSF 655


>UNIPROTKB|O73668 [details] [associations]
            symbol:Sox9 "SOX9" species:9031 "Gallus gallus" [GO:0001046
            "core promoter sequence-specific DNA binding" evidence=IEA]
            [GO:0001077 "RNA polymerase II core promoter proximal region
            sequence-specific DNA binding transcription factor activity
            involved in positive regulation of transcription" evidence=IEA]
            [GO:0001158 "enhancer sequence-specific DNA binding" evidence=IEA]
            [GO:0001502 "cartilage condensation" evidence=IEA] [GO:0001503
            "ossification" evidence=IEA] [GO:0001658 "branching involved in
            ureteric bud morphogenesis" evidence=IEA] [GO:0001708 "cell fate
            specification" evidence=IEA] [GO:0001837 "epithelial to mesenchymal
            transition" evidence=IEA] [GO:0001934 "positive regulation of
            protein phosphorylation" evidence=IEA] [GO:0001942 "hair follicle
            development" evidence=IEA] [GO:0002053 "positive regulation of
            mesenchymal cell proliferation" evidence=IEA] [GO:0002683 "negative
            regulation of immune system process" evidence=IEA] [GO:0003188
            "heart valve formation" evidence=IEA] [GO:0003203 "endocardial
            cushion morphogenesis" evidence=IEA] [GO:0003413 "chondrocyte
            differentiation involved in endochondral bone morphogenesis"
            evidence=IEA] [GO:0003415 "chondrocyte hypertrophy" evidence=IEA]
            [GO:0003682 "chromatin binding" evidence=IEA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0004672 "protein
            kinase activity" evidence=IEA] [GO:0005667 "transcription factor
            complex" evidence=IEA] [GO:0006334 "nucleosome assembly"
            evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
            [GO:0006461 "protein complex assembly" evidence=IEA] [GO:0007173
            "epidermal growth factor receptor signaling pathway" evidence=IEA]
            [GO:0007283 "spermatogenesis" evidence=IEA] [GO:0008013
            "beta-catenin binding" evidence=IEA] [GO:0010564 "regulation of
            cell cycle process" evidence=IEA] [GO:0010634 "positive regulation
            of epithelial cell migration" evidence=IEA] [GO:0014032 "neural
            crest cell development" evidence=IEA] [GO:0014068 "positive
            regulation of phosphatidylinositol 3-kinase cascade" evidence=IEA]
            [GO:0019100 "male germ-line sex determination" evidence=IEA]
            [GO:0019933 "cAMP-mediated signaling" evidence=IEA] [GO:0030155
            "regulation of cell adhesion" evidence=IEA] [GO:0030198
            "extracellular matrix organization" evidence=IEA] [GO:0030502
            "negative regulation of bone mineralization" evidence=IEA]
            [GO:0030858 "positive regulation of epithelial cell
            differentiation" evidence=IEA] [GO:0030879 "mammary gland
            development" evidence=IEA] [GO:0030903 "notochord development"
            evidence=IEA] [GO:0030916 "otic vesicle formation" evidence=IEA]
            [GO:0031018 "endocrine pancreas development" evidence=IEA]
            [GO:0032331 "negative regulation of chondrocyte differentiation"
            evidence=IEA] [GO:0032332 "positive regulation of chondrocyte
            differentiation" evidence=IEA] [GO:0034236 "protein kinase A
            catalytic subunit binding" evidence=IEA] [GO:0035019 "somatic stem
            cell maintenance" evidence=IEA] [GO:0035622 "intrahepatic bile duct
            development" evidence=IEA] [GO:0043066 "negative regulation of
            apoptotic process" evidence=IEA] [GO:0043491 "protein kinase B
            signaling cascade" evidence=IEA] [GO:0045662 "negative regulation
            of myoblast differentiation" evidence=IEA] [GO:0045732 "positive
            regulation of protein catabolic process" evidence=IEA] [GO:0045892
            "negative regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0046533 "negative regulation of photoreceptor cell
            differentiation" evidence=IEA] [GO:0048709 "oligodendrocyte
            differentiation" evidence=IEA] [GO:0050679 "positive regulation of
            epithelial cell proliferation" evidence=IEA] [GO:0050680 "negative
            regulation of epithelial cell proliferation" evidence=IEA]
            [GO:0060009 "Sertoli cell development" evidence=IEA] [GO:0060018
            "astrocyte fate commitment" evidence=IEA] [GO:0060174 "limb bud
            formation" evidence=IEA] [GO:0060221 "retinal rod cell
            differentiation" evidence=IEA] [GO:0060517 "epithelial cell
            proliferation involved in prostatic bud elongation" evidence=IEA]
            [GO:0060729 "intestinal epithelial structure maintenance"
            evidence=IEA] [GO:0060784 "regulation of cell proliferation
            involved in tissue homeostasis" evidence=IEA] [GO:0061036 "positive
            regulation of cartilage development" evidence=IEA] [GO:0070371
            "ERK1 and ERK2 cascade" evidence=IEA] [GO:0071260 "cellular
            response to mechanical stimulus" evidence=IEA] [GO:0071300
            "cellular response to retinoic acid" evidence=IEA] [GO:0071347
            "cellular response to interleukin-1" evidence=IEA] [GO:0071364
            "cellular response to epidermal growth factor stimulus"
            evidence=IEA] [GO:0071504 "cellular response to heparin"
            evidence=IEA] [GO:0071560 "cellular response to transforming growth
            factor beta stimulus" evidence=IEA] [GO:0072034 "renal vesicle
            induction" evidence=IEA] [GO:0072190 "ureter urothelium
            development" evidence=IEA] [GO:0072197 "ureter morphogenesis"
            evidence=IEA] [GO:0072289 "metanephric nephron tubule formation"
            evidence=IEA] [GO:0090090 "negative regulation of canonical Wnt
            receptor signaling pathway" evidence=IEA] [GO:0090103 "cochlea
            morphogenesis" evidence=IEA] [GO:0090190 "positive regulation of
            branching involved in ureteric bud morphogenesis" evidence=IEA]
            [GO:2000020 "positive regulation of male gonad development"
            evidence=IEA] [GO:2000138 "positive regulation of cell
            proliferation involved in heart morphogenesis" evidence=IEA]
            [GO:2000741 "positive regulation of mesenchymal stem cell
            differentiation" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0001708 GO:GO:0007173 GO:GO:0045892 GO:GO:0043066
            GO:GO:0006461 GO:GO:0030155 GO:GO:0071560 GO:GO:0019933
            GO:GO:0070371 GO:GO:0071300 GO:GO:0030198 GO:GO:0014068
            GO:GO:0003682 GO:GO:0003705 GO:GO:0001077 GO:GO:0006338
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0004672 GO:GO:0071504 GO:GO:0032332 GO:GO:0090090
            GO:GO:0071260 GO:GO:0001934 GO:GO:0090190 GO:GO:0071364
            GO:GO:0043491 GO:GO:0045732 GO:GO:0050680 GO:GO:0071347
            GO:GO:0001158 GO:GO:0030858 GO:GO:0010634 GO:GO:0016585
            GO:GO:0006334 GO:GO:0050679 GO:GO:0002053 GO:GO:0001046
            GO:GO:0030502 GO:GO:2000138 GO:GO:0061036 GO:GO:0032331
            GO:GO:0045662 GO:GO:2000020 GO:GO:0010564
            GeneTree:ENSGT00670000097649 HOVERGEN:HBG002061 KO:K09270
            InterPro:IPR022151 Pfam:PF12444 HSSP:P48432 GO:GO:2000741
            GO:GO:0072034 GO:GO:0002683 CTD:6662 UniGene:Gga.890
            EMBL:AADN02030063 EMBL:AB012236 IPI:IPI00603266 RefSeq:NP_989612.1
            SMR:O73668 STRING:O73668 Ensembl:ENSGALT00000006994 GeneID:374148
            KEGG:gga:374148 InParanoid:O73668 NextBio:20813662 Uniprot:O73668
        Length = 494

 Score = 113 (44.8 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ ++E EK PFVE AE+ +  + K+
Sbjct:   110 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKD 168

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   169 HPDYKYQ 175

 Score = 33 (16.7 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query:   119 AEENESDKSKSEVNDEDDEEGSGE 142
             A+  +S  S SEV+   +  G  +
Sbjct:   209 ADSPQSSSSISEVHSPGEHSGQSQ 232


>UNIPROTKB|P48434 [details] [associations]
            symbol:SOX9 "Transcription factor SOX-9" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008584 "male gonad
            development" evidence=IEP] [GO:0001658 "branching involved in
            ureteric bud morphogenesis" evidence=IEP] [GO:0003170 "heart valve
            development" evidence=IEP] [GO:0071300 "cellular response to
            retinoic acid" evidence=IEP] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0071300
            GO:GO:0006351 GO:GO:0008584 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0001658 GO:GO:0003170
            eggNOG:NOG295709 HOGENOM:HOG000108876 HOVERGEN:HBG002061
            InterPro:IPR022151 Pfam:PF12444 OrthoDB:EOG4TXBRZ EMBL:U12533
            IPI:IPI00589733 UniGene:Gga.890 ProteinModelPortal:P48434
            SMR:P48434 STRING:P48434 InParanoid:P48434 Uniprot:P48434
        Length = 494

 Score = 113 (44.8 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ ++E EK PFVE AE+ +  + K+
Sbjct:   111 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKD 169

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   170 HPDYKYQ 176

 Score = 33 (16.7 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query:   119 AEENESDKSKSEVNDEDDEEGSGE 142
             A+  +S  S SEV+   +  G  +
Sbjct:   210 ADSPQSSSSISEVHSPGEHSGQSQ 233


>UNIPROTKB|Q08945 [details] [associations]
            symbol:SSRP1 "FACT complex subunit SSRP1" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
            "DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0003682 "chromatin binding"
            evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=TAS]
            [GO:0006368 "transcription elongation from RNA polymerase II
            promoter" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
            [GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
            "positive regulation of viral transcription" evidence=TAS]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] Reactome:REACT_71 InterPro:IPR009071
            InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
            GO:GO:0005737 Reactome:REACT_116125 GO:GO:0005694 GO:GO:0005654
            GO:GO:0016032 GO:GO:0005730 GO:GO:0006355 Gene3D:2.30.29.30
            InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0006368 Reactome:REACT_1788 GO:GO:0050434 Reactome:REACT_1892
            InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
            InterPro:IPR024954 HOGENOM:HOG000180790 OMA:PVEVKKG CTD:6749
            HOVERGEN:HBG002932 OrthoDB:EOG41VK2K EMBL:M86737 EMBL:BC005116
            EMBL:BC091486 IPI:IPI00005154 PIR:A41976 RefSeq:NP_003137.1
            UniGene:Hs.523680 ProteinModelPortal:Q08945 SMR:Q08945 DIP:DIP-169N
            IntAct:Q08945 MINT:MINT-5004485 STRING:Q08945 PhosphoSite:Q08945
            DMDM:730840 PaxDb:Q08945 PeptideAtlas:Q08945 PRIDE:Q08945
            DNASU:6749 Ensembl:ENST00000278412 GeneID:6749 KEGG:hsa:6749
            UCSC:uc001njt.3 GeneCards:GC11M057093 HGNC:HGNC:11327 HPA:HPA002697
            MIM:604328 neXtProt:NX_Q08945 PharmGKB:PA36151 InParanoid:Q08945
            PhylomeDB:Q08945 ChiTaRS:SSRP1 GenomeRNAi:6749 NextBio:26328
            PMAP-CutDB:Q08945 ArrayExpress:Q08945 Bgee:Q08945 CleanEx:HS_SSRP1
            Genevestigator:Q08945 GermOnline:ENSG00000149136 Uniprot:Q08945
        Length = 709

 Score = 127 (49.8 bits), Expect = 4.1e-07, P = 4.1e-07
 Identities = 29/86 (33%), Positives = 49/86 (56%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SA+ +++   R++ K  HP   S+  + K AGE WK MS+++K  +  +AE  + DY K 
Sbjct:   552 SAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKA 610

Query:   105 MQDYNKQLADGVNAAEENESDKSKSE 130
             M++Y     +G    E ++ DKSK +
Sbjct:   611 MKEY-----EG-GRGESSKRDKSKKK 630


>UNIPROTKB|F1P307 [details] [associations]
            symbol:SOX9 "Transcription factor SOX-9" species:9031
            "Gallus gallus" [GO:0001046 "core promoter sequence-specific DNA
            binding" evidence=IEA] [GO:0001077 "RNA polymerase II core promoter
            proximal region sequence-specific DNA binding transcription factor
            activity involved in positive regulation of transcription"
            evidence=IEA] [GO:0001158 "enhancer sequence-specific DNA binding"
            evidence=IEA] [GO:0001502 "cartilage condensation" evidence=IEA]
            [GO:0001503 "ossification" evidence=IEA] [GO:0001658 "branching
            involved in ureteric bud morphogenesis" evidence=IEA] [GO:0001708
            "cell fate specification" evidence=IEA] [GO:0001837 "epithelial to
            mesenchymal transition" evidence=IEA] [GO:0001934 "positive
            regulation of protein phosphorylation" evidence=IEA] [GO:0001942
            "hair follicle development" evidence=IEA] [GO:0002053 "positive
            regulation of mesenchymal cell proliferation" evidence=IEA]
            [GO:0002683 "negative regulation of immune system process"
            evidence=IEA] [GO:0003188 "heart valve formation" evidence=IEA]
            [GO:0003203 "endocardial cushion morphogenesis" evidence=IEA]
            [GO:0003413 "chondrocyte differentiation involved in endochondral
            bone morphogenesis" evidence=IEA] [GO:0003415 "chondrocyte
            hypertrophy" evidence=IEA] [GO:0003682 "chromatin binding"
            evidence=IEA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0004672 "protein kinase activity" evidence=IEA]
            [GO:0005667 "transcription factor complex" evidence=IEA]
            [GO:0006334 "nucleosome assembly" evidence=IEA] [GO:0006338
            "chromatin remodeling" evidence=IEA] [GO:0006461 "protein complex
            assembly" evidence=IEA] [GO:0007173 "epidermal growth factor
            receptor signaling pathway" evidence=IEA] [GO:0007283
            "spermatogenesis" evidence=IEA] [GO:0008013 "beta-catenin binding"
            evidence=IEA] [GO:0010564 "regulation of cell cycle process"
            evidence=IEA] [GO:0010634 "positive regulation of epithelial cell
            migration" evidence=IEA] [GO:0014032 "neural crest cell
            development" evidence=IEA] [GO:0014068 "positive regulation of
            phosphatidylinositol 3-kinase cascade" evidence=IEA] [GO:0019100
            "male germ-line sex determination" evidence=IEA] [GO:0019933
            "cAMP-mediated signaling" evidence=IEA] [GO:0030155 "regulation of
            cell adhesion" evidence=IEA] [GO:0030198 "extracellular matrix
            organization" evidence=IEA] [GO:0030502 "negative regulation of
            bone mineralization" evidence=IEA] [GO:0030858 "positive regulation
            of epithelial cell differentiation" evidence=IEA] [GO:0030879
            "mammary gland development" evidence=IEA] [GO:0030903 "notochord
            development" evidence=IEA] [GO:0030916 "otic vesicle formation"
            evidence=IEA] [GO:0031018 "endocrine pancreas development"
            evidence=IEA] [GO:0032331 "negative regulation of chondrocyte
            differentiation" evidence=IEA] [GO:0032332 "positive regulation of
            chondrocyte differentiation" evidence=IEA] [GO:0034236 "protein
            kinase A catalytic subunit binding" evidence=IEA] [GO:0035019
            "somatic stem cell maintenance" evidence=IEA] [GO:0035622
            "intrahepatic bile duct development" evidence=IEA] [GO:0043066
            "negative regulation of apoptotic process" evidence=IEA]
            [GO:0043491 "protein kinase B signaling cascade" evidence=IEA]
            [GO:0045662 "negative regulation of myoblast differentiation"
            evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
            process" evidence=IEA] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0046533 "negative
            regulation of photoreceptor cell differentiation" evidence=IEA]
            [GO:0048709 "oligodendrocyte differentiation" evidence=IEA]
            [GO:0050679 "positive regulation of epithelial cell proliferation"
            evidence=IEA] [GO:0050680 "negative regulation of epithelial cell
            proliferation" evidence=IEA] [GO:0060009 "Sertoli cell development"
            evidence=IEA] [GO:0060018 "astrocyte fate commitment" evidence=IEA]
            [GO:0060174 "limb bud formation" evidence=IEA] [GO:0060221 "retinal
            rod cell differentiation" evidence=IEA] [GO:0060517 "epithelial
            cell proliferation involved in prostatic bud elongation"
            evidence=IEA] [GO:0060729 "intestinal epithelial structure
            maintenance" evidence=IEA] [GO:0060784 "regulation of cell
            proliferation involved in tissue homeostasis" evidence=IEA]
            [GO:0061036 "positive regulation of cartilage development"
            evidence=IEA] [GO:0070371 "ERK1 and ERK2 cascade" evidence=IEA]
            [GO:0071260 "cellular response to mechanical stimulus"
            evidence=IEA] [GO:0071300 "cellular response to retinoic acid"
            evidence=IEA] [GO:0071347 "cellular response to interleukin-1"
            evidence=IEA] [GO:0071364 "cellular response to epidermal growth
            factor stimulus" evidence=IEA] [GO:0071504 "cellular response to
            heparin" evidence=IEA] [GO:0071560 "cellular response to
            transforming growth factor beta stimulus" evidence=IEA] [GO:0072034
            "renal vesicle induction" evidence=IEA] [GO:0072190 "ureter
            urothelium development" evidence=IEA] [GO:0072197 "ureter
            morphogenesis" evidence=IEA] [GO:0072289 "metanephric nephron
            tubule formation" evidence=IEA] [GO:0090090 "negative regulation of
            canonical Wnt receptor signaling pathway" evidence=IEA] [GO:0090103
            "cochlea morphogenesis" evidence=IEA] [GO:0090190 "positive
            regulation of branching involved in ureteric bud morphogenesis"
            evidence=IEA] [GO:2000020 "positive regulation of male gonad
            development" evidence=IEA] [GO:2000138 "positive regulation of cell
            proliferation involved in heart morphogenesis" evidence=IEA]
            [GO:2000741 "positive regulation of mesenchymal stem cell
            differentiation" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0001708 GO:GO:0007173 GO:GO:0045892 GO:GO:0043066
            GO:GO:0006461 GO:GO:0030155 GO:GO:0071560 GO:GO:0019933
            GO:GO:0070371 GO:GO:0071300 GO:GO:0030198 GO:GO:0014068
            GO:GO:0003682 GO:GO:0003705 GO:GO:0001077 GO:GO:0006338
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0004672 GO:GO:0071504 GO:GO:0032332 GO:GO:0090090
            GO:GO:0071260 GO:GO:0001934 GO:GO:0090190 GO:GO:0071364
            GO:GO:0043491 GO:GO:0045732 GO:GO:0050680 GO:GO:0071347
            GO:GO:0001158 GO:GO:0030858 GO:GO:0010634 GO:GO:0016585
            GO:GO:0006334 GO:GO:0050679 GO:GO:0002053 GO:GO:0001046
            GO:GO:0030502 GO:GO:2000138 GO:GO:0061036 GO:GO:0032331
            GO:GO:0045662 GO:GO:2000020 GO:GO:0010564
            GeneTree:ENSGT00670000097649 InterPro:IPR022151 Pfam:PF12444
            GO:GO:2000741 GO:GO:0072034 GO:GO:0002683 OMA:GAGHVWM
            EMBL:AADN02030063 IPI:IPI00818672 Ensembl:ENSGALT00000038513
            Uniprot:F1P307
        Length = 496

 Score = 113 (44.8 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ ++E EK PFVE AE+ +  + K+
Sbjct:   112 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKD 170

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   171 HPDYKYQ 177

 Score = 33 (16.7 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query:   119 AEENESDKSKSEVNDEDDEEGSGE 142
             A+  +S  S SEV+   +  G  +
Sbjct:   211 ADSPQSSSSISEVHSPGEHSGQSQ 234


>UNIPROTKB|B7ZR65 [details] [associations]
            symbol:sox9-a "Transcription factor Sox-9-A" species:8355
            "Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0014029 "neural crest formation" evidence=IMP]
            [GO:0019899 "enzyme binding" evidence=IPI] [GO:0043049 "otic
            placode formation" evidence=IMP] [GO:0045893 "positive regulation
            of transcription, DNA-dependent" evidence=IMP] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IMP] [GO:0051216 "cartilage development"
            evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            GO:GO:0005737 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
            GO:GO:0007506 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0051216 GO:GO:0043049 GO:GO:0014029
            InterPro:IPR022151 Pfam:PF12444 EMBL:AY035397 EMBL:BC170058
            EMBL:BC170060 RefSeq:NP_001084276.1 UniGene:Xl.1690 GeneID:399405
            KEGG:xla:399405 CTD:399405 Xenbase:XB-GENE-6253910 Uniprot:B7ZR65
        Length = 477

 Score = 112 (44.5 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ ++E EK PFVE AE+ +  + K+
Sbjct:   110 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNEGEKRPFVEEAERLRVQHKKD 168

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   169 HPDYKYQ 175

 Score = 33 (16.7 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query:   119 AEENESDKSKSEVNDEDDEEGSGE 142
             A+   S  S SEV+   +  G  +
Sbjct:   209 ADSPHSSSSMSEVHSPGEHSGQSQ 232


>UNIPROTKB|F1NSW6 [details] [associations]
            symbol:SOX11 "Transcription factor SOX-11" species:9031
            "Gallus gallus" [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0000979 "RNA
            polymerase II core promoter sequence-specific DNA binding"
            evidence=IEA] [GO:0001077 "RNA polymerase II core promoter proximal
            region sequence-specific DNA binding transcription factor activity
            involved in positive regulation of transcription" evidence=IEA]
            [GO:0001105 "RNA polymerase II transcription coactivator activity"
            evidence=IEA] [GO:0001158 "enhancer sequence-specific DNA binding"
            evidence=IEA] [GO:0001841 "neural tube formation" evidence=IEA]
            [GO:0002089 "lens morphogenesis in camera-type eye" evidence=IEA]
            [GO:0003151 "outflow tract morphogenesis" evidence=IEA] [GO:0003211
            "cardiac ventricle formation" evidence=IEA] [GO:0003357
            "noradrenergic neuron differentiation" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0008135 "translation factor activity, nucleic acid binding"
            evidence=IEA] [GO:0014009 "glial cell proliferation" evidence=IEA]
            [GO:0014032 "neural crest cell development" evidence=IEA]
            [GO:0017015 "regulation of transforming growth factor beta receptor
            signaling pathway" evidence=IEA] [GO:0021510 "spinal cord
            development" evidence=IEA] [GO:0021782 "glial cell development"
            evidence=IEA] [GO:0030513 "positive regulation of BMP signaling
            pathway" evidence=IEA] [GO:0035332 "positive regulation of hippo
            signaling cascade" evidence=IEA] [GO:0045666 "positive regulation
            of neuron differentiation" evidence=IEA] [GO:0045669 "positive
            regulation of osteoblast differentiation" evidence=IEA] [GO:0045778
            "positive regulation of ossification" evidence=IEA] [GO:0046887
            "positive regulation of hormone secretion" evidence=IEA]
            [GO:0048485 "sympathetic nervous system development" evidence=IEA]
            [GO:0048557 "embryonic digestive tract morphogenesis" evidence=IEA]
            [GO:0048704 "embryonic skeletal system morphogenesis" evidence=IEA]
            [GO:0050672 "negative regulation of lymphocyte proliferation"
            evidence=IEA] [GO:0050769 "positive regulation of neurogenesis"
            evidence=IEA] [GO:0060022 "hard palate development" evidence=IEA]
            [GO:0060023 "soft palate development" evidence=IEA] [GO:0060174
            "limb bud formation" evidence=IEA] [GO:0060253 "negative regulation
            of glial cell proliferation" evidence=IEA] [GO:0060412 "ventricular
            septum morphogenesis" evidence=IEA] [GO:0060425 "lung
            morphogenesis" evidence=IEA] [GO:0060548 "negative regulation of
            cell death" evidence=IEA] [GO:0060563 "neuroepithelial cell
            differentiation" evidence=IEA] [GO:0061029 "eyelid development in
            camera-type eye" evidence=IEA] [GO:0061053 "somite development"
            evidence=IEA] [GO:0061303 "cornea development in camera-type eye"
            evidence=IEA] [GO:0061386 "closure of optic fissure" evidence=IEA]
            [GO:2000648 "positive regulation of stem cell proliferation"
            evidence=IEA] [GO:2001111 "positive regulation of lens epithelial
            cell proliferation" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005737 GO:GO:0008135 GO:GO:0001077
            GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0030513 GO:GO:0045669 GO:GO:0060548
            GO:GO:0001105 GO:GO:0000979 GO:GO:0001158 GO:GO:0060563
            GO:GO:0045778 GO:GO:0017015 GO:GO:0046887 GO:GO:2000648
            GO:GO:0050672 IPI:IPI00602181 InterPro:IPR017386 PIRSF:PIRSF038098
            OMA:TEEGEFM GO:GO:0035332 GO:GO:2001111 GO:GO:0072404
            GeneTree:ENSGT00690000101789 EMBL:AADN02002906
            Ensembl:ENSGALT00000026447 ArrayExpress:F1NSW6 Uniprot:F1NSW6
        Length = 344

 Score = 98 (39.6 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  E  P+  + A + K  G++WK + + EK PF+  AE+ +    K+
Sbjct:     2 NAFMVWSKIERRKIMEQSPDMHN-AEISKRLGKRWKMLKDSEKIPFIREAERLRL---KH 57

Query:   105 MQDY 108
             M DY
Sbjct:    58 MADY 61

 Score = 43 (20.2 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query:   116 VNAAEENESDKS------KSEVNDEDDEEGSG 141
             V+  EE+E D+       K E +DE+++E  G
Sbjct:   150 VDEEEEDEEDEDELQLRIKQEADDEEEDEEPG 181

 Score = 33 (16.7 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
 Identities = 6/15 (40%), Positives = 11/15 (73%)

Query:   133 DEDDEEGSGEVFLQL 147
             +E+DEE   E+ L++
Sbjct:   153 EEEDEEDEDELQLRI 167


>TAIR|locus:2098413 [details] [associations]
            symbol:HMG "high mobility group" species:3702
            "Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISS] [GO:0005719 "nuclear euchromatin" evidence=IDA]
            [GO:0035101 "FACT complex" evidence=IDA] [GO:0010228 "vegetative to
            reproductive phase transition of meristem" evidence=IMP]
            [GO:0000394 "RNA splicing, via endonucleolytic cleavage and
            ligation" evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
            [GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
            "methylation-dependent chromatin silencing" evidence=RCA]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
            [GO:0009616 "virus induced gene silencing" evidence=RCA]
            [GO:0009855 "determination of bilateral symmetry" evidence=RCA]
            [GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0010014
            "meristem initiation" evidence=RCA] [GO:0010050 "vegetative phase
            change" evidence=RCA] [GO:0010051 "xylem and phloem pattern
            formation" evidence=RCA] [GO:0010073 "meristem maintenance"
            evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
            interference" evidence=RCA] [GO:0016246 "RNA interference"
            evidence=RCA] [GO:0016569 "covalent chromatin modification"
            evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=RCA] [GO:0048439 "flower morphogenesis"
            evidence=RCA] [GO:0048519 "negative regulation of biological
            process" evidence=RCA] InterPro:IPR009071 InterPro:IPR000969
            PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 EMBL:CP002686
            GenomeReviews:BA000014_GR Gene3D:2.30.29.30 InterPro:IPR011993
            GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0003700
            GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0010228 GO:GO:0005719 GO:GO:0035101
            InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
            InterPro:IPR024954 OMA:PVEVKKG EMBL:D13491 EMBL:AP002057
            EMBL:BT002507 EMBL:AK318679 EMBL:AK221855 IPI:IPI00547320
            IPI:IPI00931095 PIR:S35511 RefSeq:NP_189515.1 UniGene:At.21931
            UniGene:At.48716 ProteinModelPortal:Q05153 SMR:Q05153 STRING:Q05153
            PaxDb:Q05153 PRIDE:Q05153 EnsemblPlants:AT3G28730.1 GeneID:822505
            KEGG:ath:AT3G28730 TAIR:At3g28730 HOGENOM:HOG000241245
            InParanoid:Q05153 PhylomeDB:Q05153 ProtClustDB:CLSN2684068
            Genevestigator:Q05153 GermOnline:AT3G28730 Uniprot:Q05153
        Length = 646

 Score = 125 (49.1 bits), Expect = 6.0e-07, P = 6.0e-07
 Identities = 25/81 (30%), Positives = 41/81 (50%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             S F  F +  R   K+ HP   +   VGK  G+KW+ MS D+K P+  +A+  K  Y   
Sbjct:   567 SGFMFFSQMERDNIKKEHPGI-AFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRYKDE 625

Query:   105 MQDYNKQLADGVNAAEENESD 125
             + DY       V++  +++S+
Sbjct:   626 ISDYKNPQPMNVDSGNDSDSN 646


>ZFIN|ZDB-GENE-030131-8480 [details] [associations]
            symbol:hmgb1b "high-mobility group box 1b"
            species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            ZFIN:ZDB-GENE-030131-8480 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 HOGENOM:HOG000197861 GeneTree:ENSGT00560000076717
            HOVERGEN:HBG009000 eggNOG:NOG320947 EMBL:AL929092 EMBL:BC146744
            IPI:IPI00854267 UniGene:Dr.47534 SMR:A6H8T4
            Ensembl:ENSDART00000108983 NextBio:20932104 Uniprot:A6H8T4
        Length = 165

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 22/72 (30%), Positives = 39/72 (54%)

Query:    67 SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDK 126
             S+  + K  GE W S S + K P+ ++A K K  Y+K++  Y  +   G +  E  E D+
Sbjct:    88 SIGDIAKKLGEMWNSSSAEVKQPYEKKAAKLKEKYDKDIALYRTKGIAGFSKKEGGEDDE 147

Query:   127 SKSEVNDEDDEE 138
                + ++E+D+E
Sbjct:   148 EDEDDDEEEDDE 159

 Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP  + + +   K   E+WK+MS  EK  F + A++ K  Y +
Sbjct:    13 SSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKQDKVRYER 72

Query:   104 NMQDY 108
              M++Y
Sbjct:    73 EMKNY 77


>CGD|CAF0007020 [details] [associations]
            symbol:NHP6A species:5476 "Candida albicans" [GO:0003677 "DNA
            binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
            evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
            [GO:0034724 "DNA replication-independent nucleosome organization"
            evidence=IEA] [GO:0070898 "RNA polymerase III transcriptional
            preinitiation complex assembly" evidence=IEA] [GO:0051123 "RNA
            polymerase II transcriptional preinitiation complex assembly"
            evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
            [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0008301 "DNA binding, bending" evidence=IEA] InterPro:IPR009071
            CGD:CAF0007020 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
            GO:GO:0006355 GO:GO:0003677 GO:GO:0006281 GO:GO:0006351
            eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 EMBL:AACQ01000005 EMBL:AACQ01000006 EMBL:AF196333
            ProteinModelPortal:Q9UVL1 SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
        Length = 92

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 24/67 (35%), Positives = 36/67 (53%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SA+  F  E R   +  +P   S   VGK  GEKWK+++ ++K P+  +AE  K  Y K 
Sbjct:    24 SAYMFFANENRDIVRAENPGI-SFGQVGKLLGEKWKALNSEDKLPYENKAEADKKRYEKE 82

Query:   105 MQDYNKQ 111
               +Y K+
Sbjct:    83 KAEYAKK 89


>GENEDB_PFALCIPARUM|MAL8P1.72 [details] [associations]
            symbol:MAL8P1.72 "high mobility group protein,
            putative" species:5833 "Plasmodium falciparum" [GO:0006359
            "regulation of transcription from RNA polymerase III promoter"
            evidence=ISS] InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359
            EMBL:AL844507 HOGENOM:HOG000197861 HSSP:P11632
            GenomeReviews:AL844507_GR ProtClustDB:PTZ00199
            RefSeq:XP_001349346.1 ProteinModelPortal:Q8IB14 IntAct:Q8IB14
            MINT:MINT-1562034 EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422
            KEGG:pfa:MAL8P1.72 EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV
            Uniprot:Q8IB14
        Length = 99

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 23/68 (33%), Positives = 41/68 (60%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             SA+  ++++ R +  +  P   K VA VGK  GE W  +S  +KAP+ ++A+  K  Y+K
Sbjct:    29 SAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPYEKKAQLDKVRYSK 88

Query:   104 NMQDYNKQ 111
              +++Y K+
Sbjct:    89 EIEEYRKK 96


>UNIPROTKB|D6R9A6 [details] [associations]
            symbol:HMGB2 "High mobility group protein B2" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0007289 "spermatid nucleus
            differentiation" evidence=IEA] [GO:0008584 "male gonad development"
            evidence=IEA] [GO:0019904 "protein domain specific binding"
            evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
            evidence=IEA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0048545
            "response to steroid hormone stimulus" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0003677 GO:GO:0045944 GO:GO:0048545
            GO:GO:0008584 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0007289 GO:GO:0043388 Pfam:PF09011
            HOGENOM:HOG000197861 HGNC:HGNC:5000 ChiTaRS:HMGB2 EMBL:AC097534
            IPI:IPI00967671 ProteinModelPortal:D6R9A6 SMR:D6R9A6
            Ensembl:ENST00000506267 ArrayExpress:D6R9A6 Bgee:D6R9A6
            Uniprot:D6R9A6
        Length = 134

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 21/65 (32%), Positives = 41/65 (63%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP++  + A   K   E+WK+MS  EK+ F + A+  K+ Y++
Sbjct:    14 SSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDR 73

Query:   104 NMQDY 108
              M++Y
Sbjct:    74 EMKNY 78


>UNIPROTKB|Q8IB14 [details] [associations]
            symbol:PfHMGB2 "High mobility group protein" species:36329
            "Plasmodium falciparum 3D7" [GO:0006359 "regulation of
            transcription from RNA polymerase III promoter" evidence=ISS]
            InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359 EMBL:AL844507
            HOGENOM:HOG000197861 HSSP:P11632 GenomeReviews:AL844507_GR
            ProtClustDB:PTZ00199 RefSeq:XP_001349346.1
            ProteinModelPortal:Q8IB14 IntAct:Q8IB14 MINT:MINT-1562034
            EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422 KEGG:pfa:MAL8P1.72
            EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV Uniprot:Q8IB14
        Length = 99

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 23/68 (33%), Positives = 41/68 (60%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             SA+  ++++ R +  +  P   K VA VGK  GE W  +S  +KAP+ ++A+  K  Y+K
Sbjct:    29 SAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPYEKKAQLDKVRYSK 88

Query:   104 NMQDYNKQ 111
              +++Y K+
Sbjct:    89 EIEEYRKK 96


>UNIPROTKB|Q9UVL1 [details] [associations]
            symbol:NHP6 "Non-histone chromosomal protein 6"
            species:237561 "Candida albicans SC5314" [GO:0003677 "DNA binding"
            evidence=IDA] InterPro:IPR009071 CGD:CAF0007020 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0003677
            GO:GO:0006281 GO:GO:0006351 eggNOG:COG5648 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AACQ01000005
            EMBL:AACQ01000006 EMBL:AF196333 ProteinModelPortal:Q9UVL1
            SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
        Length = 92

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 24/67 (35%), Positives = 36/67 (53%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SA+  F  E R   +  +P   S   VGK  GEKWK+++ ++K P+  +AE  K  Y K 
Sbjct:    24 SAYMFFANENRDIVRAENPGI-SFGQVGKLLGEKWKALNSEDKLPYENKAEADKKRYEKE 82

Query:   105 MQDYNKQ 111
               +Y K+
Sbjct:    83 KAEYAKK 89


>UNIPROTKB|P40650 [details] [associations]
            symbol:sox11-b "Transcription factor Sox-11-B" species:8355
            "Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IC] [GO:0007399 "nervous system
            development" evidence=IGI;IMP] [GO:0043565 "sequence-specific DNA
            binding" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0007399 GO:GO:0030154 GO:GO:0006355
            GO:GO:0043565 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 HOVERGEN:HBG005040 KO:K09268
            InterPro:IPR017386 PIRSF:PIRSF038098 EMBL:D87209 EMBL:BC070707
            EMBL:X65656 PIR:S22948 RefSeq:NP_001084325.1 UniGene:Xl.78258
            ProteinModelPortal:P40650 SMR:P40650 GeneID:399440 KEGG:xla:399440
            CTD:399440 Xenbase:XB-GENE-483422 Uniprot:P40650
        Length = 374

 Score = 99 (39.9 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
 Identities = 21/64 (32%), Positives = 38/64 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  E  P+  + A + K  G++WK +++ EK PF+  AE+ +    K+
Sbjct:    50 NAFMVWSKIERRKIMEQSPDMHN-AEISKRLGKRWKMLNDSEKIPFIREAERLRL---KH 105

Query:   105 MQDY 108
             M DY
Sbjct:   106 MADY 109

 Score = 42 (19.8 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query:   120 EENESDKSKSEVNDEDDEE 138
             EE E D+ +  +  E+D+E
Sbjct:   206 EEEEEDELQIRIKQEEDDE 224

 Score = 34 (17.0 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
 Identities = 5/17 (29%), Positives = 12/17 (70%)

Query:   122 NESDKSKSEVNDEDDEE 138
             +E D+ + E  +E+++E
Sbjct:   196 DEDDEEEEEDEEEEEDE 212


>UNIPROTKB|Q32L34 [details] [associations]
            symbol:HMGB4 "High mobility group protein B4" species:9913
            "Bos taurus" [GO:0005694 "chromosome" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0005694 GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
            GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861
            HOVERGEN:HBG009000 EMBL:BC109790 IPI:IPI00760422
            RefSeq:NP_001035652.1 UniGene:Bt.54197 ProteinModelPortal:Q32L34
            Ensembl:ENSBTAT00000000438 GeneID:539195 KEGG:bta:539195 CTD:127540
            InParanoid:Q32L34 KO:K11297 OMA:RYQEEMM OrthoDB:EOG4255TS
            NextBio:20877839 Uniprot:Q32L34
        Length = 194

 Score = 114 (45.2 bits), Expect = 7.2e-07, P = 7.2e-07
 Identities = 25/97 (25%), Positives = 51/97 (52%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             S+F +F ++   Q K  +P+  SV  V KA+G+ W + ++ +K P+ +RA   ++ Y + 
Sbjct:    98 SSFLLFCQDHYAQLKSENPS-WSVVQVAKASGKMWSAKTDVDKQPYEQRAALLRAKYREE 156

Query:   105 MQDYNKQLADGVNAAEENESDKSKS-EVNDEDDEEGS 140
             +  Y  Q        +E+ +++ +  E  + D  +GS
Sbjct:   157 LSVYRNQFNARKTCLQESATNQCREFEQAESDTTDGS 193

 Score = 102 (41.0 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F+  +R +FKE  PN         +   EKW+S+S+ EKA +   A+  K+ Y +
Sbjct:    14 SSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALAKLDKARYQE 73

Query:   104 NMQDY 108
              M +Y
Sbjct:    74 EMMNY 78


>RGD|620474 [details] [associations]
            symbol:Sox9 "SRY-box containing gene 9" species:10116 "Rattus
            norvegicus" [GO:0000976 "transcription regulatory region
            sequence-specific DNA binding" evidence=IDA] [GO:0001046 "core
            promoter sequence-specific DNA binding" evidence=ISO] [GO:0001077
            "RNA polymerase II core promoter proximal region sequence-specific
            DNA binding transcription factor activity involved in positive
            regulation of transcription" evidence=ISO;IDA] [GO:0001158
            "enhancer sequence-specific DNA binding" evidence=IDA] [GO:0001501
            "skeletal system development" evidence=ISO] [GO:0001502 "cartilage
            condensation" evidence=IMP] [GO:0001708 "cell fate specification"
            evidence=IMP] [GO:0001837 "epithelial to mesenchymal transition"
            evidence=IMP] [GO:0001894 "tissue homeostasis" evidence=IMP]
            [GO:0001934 "positive regulation of protein phosphorylation"
            evidence=IMP;IDA] [GO:0001942 "hair follicle development"
            evidence=IMP] [GO:0002053 "positive regulation of mesenchymal cell
            proliferation" evidence=IMP] [GO:0002063 "chondrocyte development"
            evidence=IMP] [GO:0002683 "negative regulation of immune system
            process" evidence=IMP] [GO:0003170 "heart valve development"
            evidence=IMP] [GO:0003179 "heart valve morphogenesis" evidence=IMP]
            [GO:0003188 "heart valve formation" evidence=IMP] [GO:0003203
            "endocardial cushion morphogenesis" evidence=IMP] [GO:0003413
            "chondrocyte differentiation involved in endochondral bone
            morphogenesis" evidence=ISO] [GO:0003415 "chondrocyte hypertrophy"
            evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003682
            "chromatin binding" evidence=ISO] [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=ISO;IMP;IDA]
            [GO:0003705 "RNA polymerase II distal enhancer sequence-specific
            DNA binding transcription factor activity" evidence=ISO;IDA]
            [GO:0004672 "protein kinase activity" evidence=IMP] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=ISO;IDA] [GO:0005667 "transcription factor complex"
            evidence=IPI] [GO:0006334 "nucleosome assembly" evidence=ISO]
            [GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=TAS]
            [GO:0006357 "regulation of transcription from RNA polymerase II
            promoter" evidence=IDA] [GO:0006461 "protein complex assembly"
            evidence=ISO] [GO:0007165 "signal transduction" evidence=IMP]
            [GO:0007173 "epidermal growth factor receptor signaling pathway"
            evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IGI]
            [GO:0007507 "heart development" evidence=IMP] [GO:0008013
            "beta-catenin binding" evidence=IPI] [GO:0008284 "positive
            regulation of cell proliferation" evidence=ISO;IMP] [GO:0008285
            "negative regulation of cell proliferation" evidence=IMP]
            [GO:0008584 "male gonad development" evidence=ISO;IGI;IMP]
            [GO:0010564 "regulation of cell cycle process" evidence=ISO]
            [GO:0010628 "positive regulation of gene expression" evidence=IGI]
            [GO:0010634 "positive regulation of epithelial cell migration"
            evidence=ISO;ISS] [GO:0014032 "neural crest cell development"
            evidence=IMP] [GO:0014068 "positive regulation of
            phosphatidylinositol 3-kinase cascade" evidence=IMP] [GO:0019100
            "male germ-line sex determination" evidence=IMP] [GO:0019933
            "cAMP-mediated signaling" evidence=ISO] [GO:0030154 "cell
            differentiation" evidence=IMP] [GO:0030155 "regulation of cell
            adhesion" evidence=IMP] [GO:0030198 "extracellular matrix
            organization" evidence=IMP] [GO:0030238 "male sex determination"
            evidence=IGI] [GO:0030279 "negative regulation of ossification"
            evidence=IMP] [GO:0030502 "negative regulation of bone
            mineralization" evidence=IMP] [GO:0030858 "positive regulation of
            epithelial cell differentiation" evidence=IMP] [GO:0030916 "otic
            vesicle formation" evidence=IMP] [GO:0031018 "endocrine pancreas
            development" evidence=IMP] [GO:0032331 "negative regulation of
            chondrocyte differentiation" evidence=IMP] [GO:0032332 "positive
            regulation of chondrocyte differentiation" evidence=ISO;IMP;IDA]
            [GO:0034236 "protein kinase A catalytic subunit binding"
            evidence=ISO] [GO:0035019 "somatic stem cell maintenance"
            evidence=IMP] [GO:0035326 "enhancer binding" evidence=ISO;IDA]
            [GO:0035622 "intrahepatic bile duct development" evidence=IMP]
            [GO:0042127 "regulation of cell proliferation" evidence=IMP]
            [GO:0042981 "regulation of apoptotic process" evidence=IMP]
            [GO:0043066 "negative regulation of apoptotic process"
            evidence=ISO;IMP] [GO:0043234 "protein complex" evidence=ISO]
            [GO:0043491 "protein kinase B signaling cascade" evidence=IMP]
            [GO:0043565 "sequence-specific DNA binding" evidence=IDA]
            [GO:0044212 "transcription regulatory region DNA binding"
            evidence=IDA] [GO:0045165 "cell fate commitment" evidence=IGI]
            [GO:0045595 "regulation of cell differentiation" evidence=IMP]
            [GO:0045662 "negative regulation of myoblast differentiation"
            evidence=IDA] [GO:0045732 "positive regulation of protein catabolic
            process" evidence=IDA] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=ISO;IMP;IDA] [GO:0045893
            "positive regulation of transcription, DNA-dependent"
            evidence=ISO;IMP;IDA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter"
            evidence=ISO;IGI;IMP;IDA] [GO:0046533 "negative regulation of
            photoreceptor cell differentiation" evidence=IGI] [GO:0048709
            "oligodendrocyte differentiation" evidence=IMP] [GO:0050679
            "positive regulation of epithelial cell proliferation"
            evidence=IMP] [GO:0050680 "negative regulation of epithelial cell
            proliferation" evidence=IMP] [GO:0051216 "cartilage development"
            evidence=IEP;IMP;TAS] [GO:0060008 "Sertoli cell differentiation"
            evidence=IMP] [GO:0060009 "Sertoli cell development" evidence=IGI]
            [GO:0060018 "astrocyte fate commitment" evidence=IGI] [GO:0060041
            "retina development in camera-type eye" evidence=IGI] [GO:0060221
            "retinal rod cell differentiation" evidence=IGI] [GO:0060350
            "endochondral bone morphogenesis" evidence=IMP] [GO:0060512
            "prostate gland morphogenesis" evidence=IMP] [GO:0060517
            "epithelial cell proliferation involved in prostatic bud
            elongation" evidence=IMP] [GO:0060729 "intestinal epithelial
            structure maintenance" evidence=IMP] [GO:0060784 "regulation of
            cell proliferation involved in tissue homeostasis" evidence=IMP]
            [GO:0061036 "positive regulation of cartilage development"
            evidence=ISO;IDA] [GO:0061138 "morphogenesis of a branching
            epithelium" evidence=IGI] [GO:0070168 "negative regulation of
            biomineral tissue development" evidence=IMP] [GO:0070371 "ERK1 and
            ERK2 cascade" evidence=IDA] [GO:0071260 "cellular response to
            mechanical stimulus" evidence=IDA] [GO:0071300 "cellular response
            to retinoic acid" evidence=IDA] [GO:0071364 "cellular response to
            epidermal growth factor stimulus" evidence=IDA] [GO:0071504
            "cellular response to heparin" evidence=IDA] [GO:0071560 "cellular
            response to transforming growth factor beta stimulus" evidence=ISO]
            [GO:0072034 "renal vesicle induction" evidence=IMP] [GO:0072197
            "ureter morphogenesis" evidence=IGI] [GO:0072289 "metanephric
            nephron tubule formation" evidence=IGI] [GO:0090090 "negative
            regulation of canonical Wnt receptor signaling pathway"
            evidence=IDA] [GO:0090103 "cochlea morphogenesis" evidence=IMP]
            [GO:0090184 "positive regulation of kidney development"
            evidence=IGI] [GO:0090190 "positive regulation of branching
            involved in ureteric bud morphogenesis" evidence=IMP] [GO:2000020
            "positive regulation of male gonad development" evidence=ISO]
            [GO:2000138 "positive regulation of cell proliferation involved in
            heart morphogenesis" evidence=IMP] [GO:2000741 "positive regulation
            of mesenchymal stem cell differentiation" evidence=ISO]
            InterPro:IPR009071 Pfam:PF00505 RGD:620474 GO:GO:0003700
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0051216 InterPro:IPR022151 Pfam:PF12444 HSSP:P48432
            IPI:IPI00392284 EMBL:AB073720 UniGene:Rn.95086
            ProteinModelPortal:Q91WY3 STRING:Q91WY3 HOVERGEN:HBG098066
            Genevestigator:Q91WY3 Uniprot:Q91WY3
        Length = 164

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ ++E EK PFVE AE+ +  + K+
Sbjct:    95 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHRKD 153

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   154 HPDYKYQ 160


>UNIPROTKB|F1M1H9 [details] [associations]
            symbol:F1M1H9 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 IPI:IPI00949462
            Ensembl:ENSRNOT00000052187 Uniprot:F1M1H9
        Length = 179

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 23/63 (36%), Positives = 33/63 (52%)

Query:    46 AFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNM 105
             AFF+F  E+  + K  HP   S+  V K  GE W + + D+K P  ++A K K  Y K+ 
Sbjct:   102 AFFLFCSEYHPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPCEKKAAKLKEKYEKDN 160

Query:   106 QDY 108
               Y
Sbjct:   161 AAY 163


>UNIPROTKB|P48435 [details] [associations]
            symbol:SOX11 "Transcription factor SOX-11" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0007399 "nervous system development" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0090263 "positive regulation of canonical Wnt
            receptor signaling pathway" evidence=IDA] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005634 GO:GO:0007399 GO:GO:0030154
            GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0090263
            EMBL:U12534 IPI:IPI00602181 PIR:I50707 RefSeq:NP_990518.1
            UniGene:Gga.32193 ProteinModelPortal:P48435 SMR:P48435
            GeneID:396104 KEGG:gga:396104 CTD:6664 HOVERGEN:HBG005040 KO:K09268
            NextBio:20816162 InterPro:IPR017386 PIRSF:PIRSF038098
            Uniprot:P48435
        Length = 396

 Score = 98 (39.6 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  E  P+  + A + K  G++WK + + EK PF+  AE+ +    K+
Sbjct:    54 NAFMVWSKIERRKIMEQSPDMHN-AEISKRLGKRWKMLKDSEKIPFIREAERLRL---KH 109

Query:   105 MQDY 108
             M DY
Sbjct:   110 MADY 113

 Score = 43 (20.2 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query:   116 VNAAEENESDKS------KSEVNDEDDEEGSG 141
             V+  EE+E D+       K E +DE+++E  G
Sbjct:   202 VDEEEEDEEDEDELQLRIKQEADDEEEDEEPG 233

 Score = 33 (16.7 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
 Identities = 6/15 (40%), Positives = 11/15 (73%)

Query:   133 DEDDEEGSGEVFLQL 147
             +E+DEE   E+ L++
Sbjct:   205 EEEDEEDEDELQLRI 219


>UNIPROTKB|F6QYV9 [details] [associations]
            symbol:SSRP1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
            InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
            GO:GO:0005634 GO:GO:0005737 Gene3D:2.30.29.30 InterPro:IPR011993
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
            Pfam:PF08512 InterPro:IPR024954 OMA:PVEVKKG EMBL:DAAA02041723
            IPI:IPI00699243 UniGene:Bt.5242 Ensembl:ENSBTAT00000000486
            Uniprot:F6QYV9
        Length = 709

 Score = 124 (48.7 bits), Expect = 8.7e-07, P = 8.7e-07
 Identities = 29/86 (33%), Positives = 49/86 (56%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SA+ +++   R++ K  HP   SV  + K AGE WK MS+++K  +  +AE  + +Y K 
Sbjct:   552 SAYMLWLNASREKIKSDHPGI-SVTDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKA 610

Query:   105 MQDYNKQLADGVNAAEENESDKSKSE 130
             M++Y     +G    E ++ DKSK +
Sbjct:   611 MKEY-----EG-GRGESSKRDKSKKK 630


>MGI|MGI:1916567 [details] [associations]
            symbol:Hmgb4 "high-mobility group box 4" species:10090 "Mus
            musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
            InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1916567 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
            GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861
            HOVERGEN:HBG009000 CTD:127540 KO:K11297 OMA:RYQEEMM
            OrthoDB:EOG4255TS HSSP:P17741 EMBL:AK005588 EMBL:BC061030
            IPI:IPI00118961 RefSeq:NP_081312.2 UniGene:Mm.331893
            ProteinModelPortal:Q6P8W9 SMR:Q6P8W9 PhosphoSite:Q6P8W9
            PRIDE:Q6P8W9 Ensembl:ENSMUST00000053830 GeneID:69317 KEGG:mmu:69317
            eggNOG:NOG288392 InParanoid:Q6P8W9 NextBio:329122 Bgee:Q6P8W9
            CleanEx:MM_HMGB4 Genevestigator:Q6P8W9 Uniprot:Q6P8W9
        Length = 181

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  FM  FR +FKE  PN         +   EKW+S+S+ EKA +   AE  K+ Y +
Sbjct:    14 SSYIHFMLNFRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALAELDKARYQQ 73

Query:   104 NMQDY 108
              M +Y
Sbjct:    74 EMMNY 78

 Score = 99 (39.9 bits), Expect = 3.3e-05, P = 3.3e-05
 Identities = 20/67 (29%), Positives = 36/67 (53%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             S+F +F  +     K+ +P+  +V  V KAAG+ W +  E EK P+ ++A   ++ Y + 
Sbjct:    98 SSFLLFSRDHYAMLKQENPD-WTVVQVAKAAGKMWSTTDEAEKKPYEQKAALMRAKYFEE 156

Query:   105 MQDYNKQ 111
              + Y  Q
Sbjct:   157 QEAYRNQ 163


>UNIPROTKB|J9NYX4 [details] [associations]
            symbol:SSRP1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
            "DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR000969
            PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
            Pfam:PF08512 InterPro:IPR024954 EMBL:AAEX03011448
            Ensembl:ENSCAFT00000049552 Uniprot:J9NYX4
        Length = 551

 Score = 122 (48.0 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 28/86 (32%), Positives = 49/86 (56%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SA+ +++   R++ K  HP   S+  + K AGE WK MS+++K  +  +AE  + +Y K 
Sbjct:   394 SAYMLWLNASREKIKADHPGI-SITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKA 452

Query:   105 MQDYNKQLADGVNAAEENESDKSKSE 130
             M++Y     +G    E ++ DKSK +
Sbjct:   453 MKEY-----EG-GRGESSKRDKSKKK 472


>WB|WBGene00001973 [details] [associations]
            symbol:hmg-3 species:6239 "Caenorhabditis elegans"
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
            "positive regulation of growth rate" evidence=IMP] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0051301 "cell division"
            evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0010171
            "body morphogenesis" evidence=IMP] [GO:0040018 "positive regulation
            of multicellular organism growth" evidence=IMP] [GO:0007413 "axonal
            fasciculation" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
            [GO:0048477 "oogenesis" evidence=IMP] InterPro:IPR009071
            InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
            GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
            GO:GO:0005694 GO:GO:0002119 GO:GO:0006355 Gene3D:2.30.29.30
            InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            GO:GO:0010171 GO:GO:0040011 GO:GO:0040018 GO:GO:0048477
            GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0000910 GO:GO:0007413
            GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
            EMBL:FO080198 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
            HOGENOM:HOG000180790 PIR:T34025 RefSeq:NP_491688.1
            ProteinModelPortal:O01683 SMR:O01683 IntAct:O01683 STRING:O01683
            PaxDb:O01683 PRIDE:O01683 EnsemblMetazoa:C32F10.5 GeneID:172250
            KEGG:cel:CELE_C32F10.5 UCSC:C32F10.5 CTD:172250 WormBase:C32F10.5
            InParanoid:O01683 OMA:KRATTAY NextBio:874675 Uniprot:O01683
        Length = 689

 Score = 123 (48.4 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 38/136 (27%), Positives = 61/136 (44%)

Query:    14 DSKLKSKGARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGK 73
             +  +K K  + GK+T                +A+ ++    R   KE   +  ++  V K
Sbjct:   541 EKPVKEKAVKKGKKTKDPNEPKRAT------TAYIIWFNANRNSMKE---DGDTLGDVAK 591

Query:    74 AAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE----ENESD---- 125
              AG KWKSMS D+K  + ++A + K+ Y   M++Y K    GV  A     +  SD    
Sbjct:   592 KAGAKWKSMSADDKKEWNDKAAQDKARYEAEMKEYKKN-GGGVEKASGPSTKKSSDQSPG 650

Query:   126 ---KSKSEVNDEDDEE 138
                KSK  ++D DD +
Sbjct:   651 KQFKSKEHISDTDDSD 666


>UNIPROTKB|I3LLA8 [details] [associations]
            symbol:SSRP1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
            InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
            GO:GO:0005634 GO:GO:0005737 Gene3D:2.30.29.30 InterPro:IPR011993
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
            Pfam:PF08512 KO:K09272 InterPro:IPR024954 OMA:PVEVKKG CTD:6749
            EMBL:FP312857 RefSeq:XP_003353912.1 Ensembl:ENSSSCT00000023703
            GeneID:100624907 KEGG:ssc:100624907 Uniprot:I3LLA8
        Length = 709

 Score = 123 (48.4 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 28/86 (32%), Positives = 49/86 (56%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SA+ +++   R++ K  HP   S+  + K AGE WK MS+++K  +  +AE  + +Y K 
Sbjct:   552 SAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKA 610

Query:   105 MQDYNKQLADGVNAAEENESDKSKSE 130
             M++Y     +G    E ++ DKSK +
Sbjct:   611 MKEY-----EG-GRGESSKRDKSKKK 630


>UNIPROTKB|F1Q2J2 [details] [associations]
            symbol:SSRP1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
            "DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR000969
            PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 GO:GO:0005634
            Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
            InterPro:IPR024954 OMA:PVEVKKG EMBL:AAEX03011448
            Ensembl:ENSCAFT00000012707 Uniprot:F1Q2J2
        Length = 710

 Score = 123 (48.4 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 26/90 (28%), Positives = 47/90 (52%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SA+ +++   R++ K  HP   S+  + K AGE WK MS+++K  +  +AE  + +Y K 
Sbjct:   551 SAYMLWLNASREKIKADHPGI-SITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKA 609

Query:   105 MQDYNKQLADGVNAAEENESDKSKSEVNDE 134
             M++Y     +   +  +    K K +V  E
Sbjct:   610 MKEYEGGRGESSKSYRDKSKKKKKVKVKME 639


>UNIPROTKB|P57073 [details] [associations]
            symbol:SOX8 "Transcription factor SOX-8" species:9606 "Homo
            sapiens" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0008134 "transcription factor binding"
            evidence=IEA] [GO:0046533 "negative regulation of photoreceptor
            cell differentiation" evidence=IEA] [GO:0048469 "cell maturation"
            evidence=IEA] [GO:0060018 "astrocyte fate commitment" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=NAS] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IC;IDA] [GO:0001755
            "neural crest cell migration" evidence=ISS] [GO:0014015 "positive
            regulation of gliogenesis" evidence=ISS] [GO:0043066 "negative
            regulation of apoptotic process" evidence=ISS] [GO:0048484 "enteric
            nervous system development" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0001649 "osteoblast differentiation"
            evidence=ISS] [GO:0001701 "in utero embryonic development"
            evidence=ISS] [GO:0007283 "spermatogenesis" evidence=ISS]
            [GO:0007422 "peripheral nervous system development" evidence=ISS]
            [GO:0010817 "regulation of hormone levels" evidence=ISS]
            [GO:0033690 "positive regulation of osteoblast proliferation"
            evidence=ISS] [GO:0045444 "fat cell differentiation" evidence=ISS]
            [GO:0045165 "cell fate commitment" evidence=ISS] [GO:0060009
            "Sertoli cell development" evidence=ISS] [GO:0048709
            "oligodendrocyte differentiation" evidence=ISS] [GO:0060041 "retina
            development in camera-type eye" evidence=ISS] [GO:0060221 "retinal
            rod cell differentiation" evidence=ISS] [GO:0061138 "morphogenesis
            of a branching epithelium" evidence=ISS] [GO:0072197 "ureter
            morphogenesis" evidence=ISS] [GO:0072289 "metanephric nephron
            tubule formation" evidence=ISS] [GO:0000979 "RNA polymerase II core
            promoter sequence-specific DNA binding" evidence=ISS] [GO:0045892
            "negative regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0072034 "renal vesicle induction" evidence=ISS] [GO:0090184
            "positive regulation of kidney development" evidence=ISS]
            [GO:0090190 "positive regulation of branching involved in ureteric
            bud morphogenesis" evidence=ISS] [GO:0045893 "positive regulation
            of transcription, DNA-dependent" evidence=ISS] [GO:0008584 "male
            gonad development" evidence=ISS] [GO:0045662 "negative regulation
            of myoblast differentiation" evidence=ISS] [GO:0060612 "adipose
            tissue development" evidence=ISS] [GO:0007165 "signal transduction"
            evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            GO:GO:0005737 GO:GO:0045892 GO:GO:0007165 GO:GO:0043066
            GO:GO:0001755 GO:GO:0001701 GO:GO:0045944 GO:GO:0007422
            GO:GO:0060612 GO:GO:0003700 GO:GO:0007283 GO:GO:0006351
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0060009 GO:GO:0090190 GO:GO:0001649 GO:GO:0045444
            GO:GO:0000979 GO:GO:0048709 GO:GO:0048484 GO:GO:0010817
            GO:GO:0048469 GO:GO:0033690 GO:GO:0045662 GO:GO:0046533
            EMBL:AE006465 GO:GO:0060018 GO:GO:0014015 GO:GO:0072289
            GO:GO:0072197 HOGENOM:HOG000108876 HOVERGEN:HBG002061 KO:K09270
            InterPro:IPR022151 Pfam:PF12444 CTD:30812 eggNOG:NOG324597
            OrthoDB:EOG4ZKJMD EMBL:AF226675 EMBL:Z99757 EMBL:BC031797
            EMBL:AF164104 IPI:IPI00299069 RefSeq:NP_055402.2 UniGene:Hs.243678
            ProteinModelPortal:P57073 SMR:P57073 IntAct:P57073 STRING:P57073
            PhosphoSite:P57073 DMDM:10720294 PRIDE:P57073
            Ensembl:ENST00000293894 GeneID:30812 KEGG:hsa:30812 UCSC:uc002ckn.3
            GeneCards:GC16P001033 HGNC:HGNC:11203 HPA:HPA041640 MIM:605923
            neXtProt:NX_P57073 PharmGKB:PA36040 InParanoid:P57073 OMA:DQSHGSP
            PhylomeDB:P57073 ChiTaRS:SOX8 GenomeRNAi:30812 NextBio:52860
            Bgee:P57073 CleanEx:HS_SOX8 Genevestigator:P57073
            GermOnline:ENSG00000005513 GO:GO:0061138 GO:GO:0072034
            GO:GO:0060221 Uniprot:P57073
        Length = 446

 Score = 120 (47.3 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 32/101 (31%), Positives = 55/101 (54%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ +SE EK PFVE AE+ +  + K+
Sbjct:   107 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLSESEKRPFVEEAERLRVQHKKD 165

Query:   105 MQDYNKQLADGVNA-AEENESDKSKSEVNDEDDEEGSGEVF 144
               DY  Q     +A A  ++SD S +E+       G G V+
Sbjct:   166 HPDYKYQPRRRKSAKAGHSDSD-SGAELGPHP---GGGAVY 202


>SGD|S000006256 [details] [associations]
            symbol:NHP6A "High-mobility group (HMG) protein, binds to and
            remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
            [GO:0032301 "MutSalpha complex" evidence=IDA] [GO:0006974 "response
            to DNA damage stimulus" evidence=IEA] [GO:0070898 "RNA polymerase
            III transcriptional preinitiation complex assembly"
            evidence=IGI;IDA] [GO:0006338 "chromatin remodeling" evidence=IGI]
            [GO:0034724 "DNA replication-independent nucleosome organization"
            evidence=IDA] [GO:0051123 "RNA polymerase II transcriptional
            preinitiation complex assembly" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005694
            "chromosome" evidence=IEA] [GO:0008301 "DNA binding, bending"
            evidence=IDA] [GO:0031491 "nucleosome binding" evidence=IDA]
            [GO:0043565 "sequence-specific DNA binding" evidence=IDA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006298 "mismatch
            repair" evidence=IC] InterPro:IPR009071 SGD:S000006256 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0043565
            GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006298
            EMBL:Z71255 EMBL:BK006949 GO:GO:0031491 EMBL:Z49219
            GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861 GO:GO:0051123
            EMBL:M95912 EMBL:X15317 EMBL:AY693230 PIR:A35072 RefSeq:NP_015377.1
            PDB:1CG7 PDB:1J5N PDB:1LWM PDBsum:1CG7 PDBsum:1J5N PDBsum:1LWM
            DisProt:DP00432 ProteinModelPortal:P11632 SMR:P11632 IntAct:P11632
            MINT:MINT-2785986 STRING:P11632 PaxDb:P11632 PeptideAtlas:P11632
            EnsemblFungi:YPR052C GeneID:856165 KEGG:sce:YPR052C CYGD:YPR052c
            OMA:FFANDNR OrthoDB:EOG4S7P0P EvolutionaryTrace:P11632
            NextBio:981313 Genevestigator:P11632 GermOnline:YPR052C
            GO:GO:0034724 GO:GO:0070898 Uniprot:P11632
        Length = 93

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 24/69 (34%), Positives = 37/69 (53%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SA+  F  E R   +  +P+  +   VGK  GEKWK+++ +EK P+  +A+  K  Y   
Sbjct:    26 SAYMFFANENRDIVRSENPDI-TFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESE 84

Query:   105 MQDYNKQLA 113
              + YN  LA
Sbjct:    85 KELYNATLA 93


>MGI|MGI:107912 [details] [associations]
            symbol:Ssrp1 "structure specific recognition protein 1"
            species:10090 "Mus musculus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005694 "chromosome"
            evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
            to DNA damage stimulus" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR009071
            InterPro:IPR000969 PRINTS:PR00887 MGI:MGI:107912 Pfam:PF00505
            Pfam:PF03531 GO:GO:0005737 GO:GO:0005694 GO:GO:0005730
            GO:GO:0006355 Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
            GO:GO:0006260 GO:GO:0006281 GO:GO:0006351 GO:GO:0003682
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
            eggNOG:COG5165 KO:K09272 InterPro:IPR024954 HOGENOM:HOG000180790
            OMA:PVEVKKG CTD:6749 HOVERGEN:HBG002932 OrthoDB:EOG41VK2K
            EMBL:S50213 EMBL:AK146446 EMBL:AK146585 EMBL:AK146607 EMBL:AK151584
            EMBL:AK158552 EMBL:BC042502 EMBL:BC096682 IPI:IPI00407571
            IPI:IPI00652593 PIR:A41265 RefSeq:NP_001129553.1 RefSeq:NP_892035.2
            UniGene:Mm.219793 ProteinModelPortal:Q08943 SMR:Q08943
            IntAct:Q08943 STRING:Q08943 PhosphoSite:Q08943 PaxDb:Q08943
            PRIDE:Q08943 Ensembl:ENSMUST00000077798 Ensembl:ENSMUST00000168266
            GeneID:20833 KEGG:mmu:20833 NextBio:299579 Bgee:Q08943
            CleanEx:MM_SSRP1 Genevestigator:Q08943
            GermOnline:ENSMUSG00000027067 Uniprot:Q08943
        Length = 708

 Score = 122 (48.0 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 25/87 (28%), Positives = 47/87 (54%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SA+ +++   R++ K  HP   S+  + K AGE WK MS+++K  +  +AE  + +Y K 
Sbjct:   552 SAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKA 610

Query:   105 MQDYNKQLADGVNAAEENESDKSKSEV 131
             M++Y     D     +  +  K K+++
Sbjct:   611 MKEYEGGRGDSSKRDKSKKKKKVKAKM 637


>RGD|621143 [details] [associations]
            symbol:Ssrp1 "structure specific recognition protein 1"
            species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
            evidence=IEA;NAS] [GO:0003682 "chromatin binding" evidence=IEA;ISO]
            [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005694 "chromosome"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA;ISO] [GO:0006260 "DNA replication"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
            Pfam:PF03531 RGD:621143 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
            Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
            GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
            InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
            InterPro:IPR024954 HOGENOM:HOG000180790 CTD:6749 HOVERGEN:HBG002932
            EMBL:BC083588 EMBL:L08814 IPI:IPI00231263 PIR:S35637
            RefSeq:NP_112383.1 UniGene:Rn.35908 ProteinModelPortal:Q04931
            STRING:Q04931 PhosphoSite:Q04931 PRIDE:Q04931
            Ensembl:ENSRNOT00000012022 GeneID:81785 KEGG:rno:81785
            UCSC:RGD:621143 NextBio:615643 ArrayExpress:Q04931
            Genevestigator:Q04931 GermOnline:ENSRNOG00000008825 Uniprot:Q04931
        Length = 709

 Score = 122 (48.0 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 25/87 (28%), Positives = 47/87 (54%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SA+ +++   R++ K  HP   S+  + K AGE WK MS+++K  +  +AE  + +Y K 
Sbjct:   552 SAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKA 610

Query:   105 MQDYNKQLADGVNAAEENESDKSKSEV 131
             M++Y     D     +  +  K K+++
Sbjct:   611 MKEYEGGRGDSSKRDKSKKKKKVKAKL 637


>UNIPROTKB|Q04931 [details] [associations]
            symbol:Ssrp1 "FACT complex subunit SSRP1" species:10116
            "Rattus norvegicus" [GO:0003682 "chromatin binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR009071
            InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
            RGD:621143 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
            Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
            GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
            InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
            InterPro:IPR024954 HOGENOM:HOG000180790 CTD:6749 HOVERGEN:HBG002932
            EMBL:BC083588 EMBL:L08814 IPI:IPI00231263 PIR:S35637
            RefSeq:NP_112383.1 UniGene:Rn.35908 ProteinModelPortal:Q04931
            STRING:Q04931 PhosphoSite:Q04931 PRIDE:Q04931
            Ensembl:ENSRNOT00000012022 GeneID:81785 KEGG:rno:81785
            UCSC:RGD:621143 NextBio:615643 ArrayExpress:Q04931
            Genevestigator:Q04931 GermOnline:ENSRNOG00000008825 Uniprot:Q04931
        Length = 709

 Score = 122 (48.0 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 25/87 (28%), Positives = 47/87 (54%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SA+ +++   R++ K  HP   S+  + K AGE WK MS+++K  +  +AE  + +Y K 
Sbjct:   552 SAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKA 610

Query:   105 MQDYNKQLADGVNAAEENESDKSKSEV 131
             M++Y     D     +  +  K K+++
Sbjct:   611 MKEYEGGRGDSSKRDKSKKKKKVKAKL 637


>UNIPROTKB|F1S9L1 [details] [associations]
            symbol:SOX11 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:2000678 "negative regulation of transcription
            regulatory region DNA binding" evidence=ISS] [GO:0061053 "somite
            development" evidence=ISS] [GO:0035332 "positive regulation of
            hippo signaling cascade" evidence=ISS] [GO:0021782 "glial cell
            development" evidence=ISS] [GO:0003211 "cardiac ventricle
            formation" evidence=ISS] [GO:2001111 "positive regulation of lens
            epithelial cell proliferation" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0008135 "translation factor activity,
            nucleic acid binding" evidence=ISS] [GO:0050769 "positive
            regulation of neurogenesis" evidence=ISS] [GO:0045666 "positive
            regulation of neuron differentiation" evidence=ISS] [GO:0061386
            "closure of optic fissure" evidence=ISS] [GO:0061303 "cornea
            development in camera-type eye" evidence=ISS] [GO:0030513 "positive
            regulation of BMP signaling pathway" evidence=ISS] [GO:0002089
            "lens morphogenesis in camera-type eye" evidence=ISS] [GO:0061029
            "eyelid development in camera-type eye" evidence=ISS] [GO:0060425
            "lung morphogenesis" evidence=ISS] [GO:0060412 "ventricular septum
            morphogenesis" evidence=ISS] [GO:0060023 "soft palate development"
            evidence=ISS] [GO:0060022 "hard palate development" evidence=ISS]
            [GO:0048704 "embryonic skeletal system morphogenesis" evidence=ISS]
            [GO:0048557 "embryonic digestive tract morphogenesis" evidence=ISS]
            [GO:0003151 "outflow tract morphogenesis" evidence=ISS] [GO:0000976
            "transcription regulatory region sequence-specific DNA binding"
            evidence=ISS] [GO:0001077 "RNA polymerase II core promoter proximal
            region sequence-specific DNA binding transcription factor activity
            involved in positive regulation of transcription" evidence=ISS]
            [GO:0001105 "RNA polymerase II transcription coactivator activity"
            evidence=ISS] [GO:0045669 "positive regulation of osteoblast
            differentiation" evidence=ISS] [GO:2000648 "positive regulation of
            stem cell proliferation" evidence=ISS] [GO:0045778 "positive
            regulation of ossification" evidence=ISS] [GO:0060253 "negative
            regulation of glial cell proliferation" evidence=ISS] [GO:0010629
            "negative regulation of gene expression" evidence=ISS] [GO:0010628
            "positive regulation of gene expression" evidence=ISS] [GO:0000122
            "negative regulation of transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0060563 "neuroepithelial cell
            differentiation" evidence=ISS] [GO:0060548 "negative regulation of
            cell death" evidence=ISS] [GO:0060174 "limb bud formation"
            evidence=ISS] [GO:0048485 "sympathetic nervous system development"
            evidence=ISS] [GO:0046887 "positive regulation of hormone
            secretion" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0001158 "enhancer sequence-specific DNA binding" evidence=ISS]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0001071 "nucleic acid binding transcription
            factor activity" evidence=ISS] [GO:0021510 "spinal cord
            development" evidence=ISS] [GO:0014032 "neural crest cell
            development" evidence=ISS] [GO:0014009 "glial cell proliferation"
            evidence=ISS] [GO:0008284 "positive regulation of cell
            proliferation" evidence=ISS] [GO:0003357 "noradrenergic neuron
            differentiation" evidence=ISS] [GO:0001841 "neural tube formation"
            evidence=ISS] [GO:0001501 "skeletal system development"
            evidence=ISS] [GO:0050672 "negative regulation of lymphocyte
            proliferation" evidence=IEA] [GO:0017015 "regulation of
            transforming growth factor beta receptor signaling pathway"
            evidence=IEA] [GO:0000979 "RNA polymerase II core promoter
            sequence-specific DNA binding" evidence=IEA] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005634 GO:GO:0005737 GO:GO:0008135
            GO:GO:0001077 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0014009 GO:GO:0050769
            GO:GO:0030513 GO:GO:0045669 GO:GO:0045666 GO:GO:0060548
            GO:GO:0021510 GO:GO:0014032 GO:GO:0048704 GO:GO:0001105
            GO:GO:0000979 GO:GO:0061303 GO:GO:0061029 GO:GO:0003151
            GO:GO:0048485 GO:GO:0001158 GO:GO:0060563 GO:GO:0045778
            GO:GO:0001841 GO:GO:0017015 GO:GO:0002089 GO:GO:0060412
            GO:GO:0046887 GO:GO:0060174 GO:GO:0060023 GO:GO:0060022
            GO:GO:2000648 GO:GO:0060253 GO:GO:0048557 GO:GO:0060425
            GO:GO:0061386 GO:GO:0050672 GO:GO:2000678 GO:GO:0021782
            GO:GO:0003357 GO:GO:0061053 GO:GO:0003211 KO:K09268
            InterPro:IPR017386 PIRSF:PIRSF038098 OMA:TEEGEFM GO:GO:0035332
            GO:GO:2001111 GO:GO:0072404 GeneTree:ENSGT00690000101789
            EMBL:FP245498 RefSeq:XP_003354985.1 Ensembl:ENSSSCT00000009462
            GeneID:100514639 KEGG:ssc:100514639 Uniprot:F1S9L1
        Length = 447

 Score = 100 (40.3 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
 Identities = 26/97 (26%), Positives = 47/97 (48%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  E  P+  + A + K  G++WK + + EK PF+  AE+ +    K+
Sbjct:    54 NAFMVWSKIERRKIMEQSPDMHN-AEISKRLGKRWKMLKDSEKIPFIREAERLRL---KH 109

Query:   105 MQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEGSG 141
             M DY           + + S K  +  + E +  G G
Sbjct:   110 MADYPDYKYRPRKKPKMDPSAKPSASQSPEKNAAGGG 146

 Score = 40 (19.1 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query:   133 DEDDEEGSGEVFLQL 147
             DEDDE+   E  LQL
Sbjct:   226 DEDDEDDEDEDELQL 240


>UNIPROTKB|Q91731 [details] [associations]
            symbol:sox11-a "Transcription factor Sox-11-A" species:8355
            "Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IC] [GO:0007399 "nervous system
            development" evidence=IGI;IMP] [GO:0043565 "sequence-specific DNA
            binding" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0007399 GO:GO:0030154 GO:GO:0006355
            GO:GO:0043565 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 HOVERGEN:HBG005040 KO:K09268
            InterPro:IPR017386 PIRSF:PIRSF038098 EMBL:D86076 EMBL:D83650
            PIR:S72169 RefSeq:NP_001135834.1 UniGene:Xl.891 GeneID:100216330
            KEGG:xla:100216330 CTD:100216330 Xenbase:XB-GENE-6252061
            Uniprot:Q91731
        Length = 382

 Score = 99 (39.9 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
 Identities = 21/64 (32%), Positives = 38/64 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  E  P+  + A + K  G++WK +++ EK PF+  AE+ +    K+
Sbjct:    52 NAFMVWSKIERRKIMEQSPDMHN-AEISKRLGKRWKMLNDSEKIPFIREAERLRL---KH 107

Query:   105 MQDY 108
             M DY
Sbjct:   108 MADY 111

 Score = 39 (18.8 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
 Identities = 6/19 (31%), Positives = 12/19 (63%)

Query:   120 EENESDKSKSEVNDEDDEE 138
             +E E D+ +  +  E+D+E
Sbjct:   214 DEEEEDELQIRIKQEEDDE 232


>WB|WBGene00004077 [details] [associations]
            symbol:pop-1 species:6239 "Caenorhabditis elegans"
            [GO:0016055 "Wnt receptor signaling pathway" evidence=IEA]
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0009790
            "embryo development" evidence=IMP] [GO:0001703 "gastrulation with
            mouth forming first" evidence=IMP] [GO:0002009 "morphogenesis of an
            epithelium" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
            development" evidence=IMP] [GO:0007052 "mitotic spindle
            organization" evidence=IMP] [GO:0016246 "RNA interference"
            evidence=IMP] [GO:0040027 "negative regulation of vulval
            development" evidence=IMP] [GO:0006915 "apoptotic process"
            evidence=IMP] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IMP;IDA] [GO:0010085
            "polarity specification of proximal/distal axis" evidence=IGI]
            [GO:0042659 "regulation of cell fate specification" evidence=IGI]
            [GO:0009786 "regulation of asymmetric cell division" evidence=IGI]
            [GO:0007500 "mesodermal cell fate determination" evidence=IGI;IMP]
            [GO:0006357 "regulation of transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0043282 "pharyngeal muscle development"
            evidence=IGI;IMP] [GO:0009880 "embryonic pattern specification"
            evidence=IGI;IMP] [GO:0040026 "positive regulation of vulval
            development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0008013 "beta-catenin binding" evidence=IPI] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISS;IDA] [GO:0043565 "sequence-specific DNA binding"
            evidence=IDA] [GO:0008134 "transcription factor binding"
            evidence=IPI] [GO:0035035 "histone acetyltransferase binding"
            evidence=IPI] [GO:0000977 "RNA polymerase II regulatory region
            sequence-specific DNA binding" evidence=IDA] InterPro:IPR009071
            InterPro:IPR024940 Pfam:PF00505 GO:GO:0009792 GO:GO:0002009
            GO:GO:0005737 GO:GO:0006915 GO:GO:0045892 GO:GO:0007052
            GO:GO:0016246 GO:GO:0045944 GO:GO:0003700 GO:GO:0005667
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0040035 GO:GO:0009786 GO:GO:0009880 GO:GO:0008356
            GO:GO:0060070 GO:GO:0040027 GO:GO:0000977 GO:GO:0040026
            GO:GO:0042659 GO:GO:0007500 GO:GO:0001703 GO:GO:0043282
            PANTHER:PTHR10373 GO:GO:0010085 eggNOG:NOG252916
            GeneTree:ENSGT00390000009964 HOGENOM:HOG000184838 EMBL:U37532
            EMBL:FO081765 PIR:A57667 PIR:C87732 PIR:T32931 RefSeq:NP_491053.4
            UniGene:Cel.19670 PDB:3C2G PDBsum:3C2G ProteinModelPortal:Q10666
            SMR:Q10666 DIP:DIP-25683N IntAct:Q10666 MINT:MINT-214603
            STRING:Q10666 PaxDb:Q10666 EnsemblMetazoa:W10C8.2 GeneID:171849
            KEGG:cel:CELE_W10C8.2 UCSC:W10C8.2 CTD:171849 WormBase:W10C8.2
            InParanoid:Q10666 OMA:QQLADDK EvolutionaryTrace:Q10666
            NextBio:872963 Uniprot:Q10666
        Length = 438

 Score = 119 (46.9 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 31/93 (33%), Positives = 51/93 (54%)

Query:    45 SAFFVFMEEFRKQFKEAHPNN-KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             +AF  FM+E RK   E   NN K  A + K  G++W  +S++E+A + E A+K K  + +
Sbjct:   197 NAFMWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDLSKEEQAKYFEMAKKDKETHKE 256

Query:   104 NMQDYNKQLADGVNAAE-ENESDKS-KSEVNDE 134
                +++ +    VN  + +   DKS  SE ND+
Sbjct:   257 RYPEWSARENYAVNKKKTKKRRDKSIPSENNDQ 289


>UNIPROTKB|Q10666 [details] [associations]
            symbol:pop-1 "Protein pop-1" species:6239 "Caenorhabditis
            elegans" [GO:0005515 "protein binding" evidence=IPI] [GO:0008356
            "asymmetric cell division" evidence=IMP] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0008134 "transcription factor binding"
            evidence=IPI] [GO:0042826 "histone deacetylase binding"
            evidence=IPI] [GO:0019901 "protein kinase binding" evidence=IPI]
            [GO:0016055 "Wnt receptor signaling pathway" evidence=IBA;TAS]
            [GO:0060070 "canonical Wnt receptor signaling pathway"
            evidence=IBA] [GO:0044212 "transcription regulatory region DNA
            binding" evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] InterPro:IPR009071 InterPro:IPR024940 Pfam:PF00505
            GO:GO:0009792 GO:GO:0002009 GO:GO:0005737 GO:GO:0006915
            GO:GO:0045892 GO:GO:0007052 GO:GO:0016246 GO:GO:0045944
            GO:GO:0003700 GO:GO:0005667 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0040035 GO:GO:0009786
            GO:GO:0009880 GO:GO:0008356 GO:GO:0060070 GO:GO:0040027
            GO:GO:0000977 GO:GO:0040026 GO:GO:0042659 GO:GO:0007500
            GO:GO:0001703 GO:GO:0043282 PANTHER:PTHR10373 GO:GO:0010085
            eggNOG:NOG252916 GeneTree:ENSGT00390000009964 HOGENOM:HOG000184838
            EMBL:U37532 EMBL:FO081765 PIR:A57667 PIR:C87732 PIR:T32931
            RefSeq:NP_491053.4 UniGene:Cel.19670 PDB:3C2G PDBsum:3C2G
            ProteinModelPortal:Q10666 SMR:Q10666 DIP:DIP-25683N IntAct:Q10666
            MINT:MINT-214603 STRING:Q10666 PaxDb:Q10666 EnsemblMetazoa:W10C8.2
            GeneID:171849 KEGG:cel:CELE_W10C8.2 UCSC:W10C8.2 CTD:171849
            WormBase:W10C8.2 InParanoid:Q10666 OMA:QQLADDK
            EvolutionaryTrace:Q10666 NextBio:872963 Uniprot:Q10666
        Length = 438

 Score = 119 (46.9 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 31/93 (33%), Positives = 51/93 (54%)

Query:    45 SAFFVFMEEFRKQFKEAHPNN-KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             +AF  FM+E RK   E   NN K  A + K  G++W  +S++E+A + E A+K K  + +
Sbjct:   197 NAFMWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDLSKEEQAKYFEMAKKDKETHKE 256

Query:   104 NMQDYNKQLADGVNAAE-ENESDKS-KSEVNDE 134
                +++ +    VN  + +   DKS  SE ND+
Sbjct:   257 RYPEWSARENYAVNKKKTKKRRDKSIPSENNDQ 289


>POMBASE|SPBC28F2.11 [details] [associations]
            symbol:SPBC28F2.11 "HMG box protein" species:4896
            "Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=ISM]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005794 "Golgi apparatus"
            evidence=IDA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=NAS] [GO:0043066 "negative regulation of
            apoptotic process" evidence=IGI] InterPro:IPR009071
            PomBase:SPBC28F2.11 GO:GO:0005794 GO:GO:0043066 GO:GO:0006355
            GO:GO:0003677 EMBL:CU329671 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 HSSP:P63159
            OrthoDB:EOG4RV61X PIR:T40054 RefSeq:NP_595672.1
            ProteinModelPortal:Q9USU7 STRING:Q9USU7 EnsemblFungi:SPBC28F2.11.1
            GeneID:2540337 KEGG:spo:SPBC28F2.11 eggNOG:NOG246329
            NextBio:20801465 Uniprot:Q9USU7
        Length = 310

 Score = 116 (45.9 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 31/90 (34%), Positives = 47/90 (52%)

Query:    45 SAFFVFMEEFRKQFKEA-HPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             SA+ +F +  R + KE+    +  V  V KA  EKW S+SED++  + E A K +  Y +
Sbjct:   122 SAYNLFQKNQRSEIKESLGEKSNDVKEVNKAMHEKWGSLSEDDRKTYEEEASKLREAYEE 181

Query:   104 NMQDYN--KQ---LADGVNAAEENESDKSK 128
              M  YN  K+   +AD    AEE  +  S+
Sbjct:   182 EMAAYNASKENASVADSRVTAEETSTKPSE 211


>UNIPROTKB|P23497 [details] [associations]
            symbol:SP100 "Nuclear autoantigen Sp-100" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0019048
            "virus-host interaction" evidence=IEA] [GO:0019904 "protein domain
            specific binding" evidence=IPI] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0016605 "PML
            body" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
            [GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS]
            [GO:0060333 "interferon-gamma-mediated signaling pathway"
            evidence=IC;TAS] [GO:0005730 "nucleolus" evidence=IMP;IDA]
            [GO:0032526 "response to retinoic acid" evidence=IDA] [GO:0034097
            "response to cytokine stimulus" evidence=IDA] [GO:0034399 "nuclear
            periphery" evidence=IDA] [GO:0048384 "retinoic acid receptor
            signaling pathway" evidence=IC] [GO:0003713 "transcription
            coactivator activity" evidence=IDA] [GO:0051091 "positive
            regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IDA] [GO:0006978 "DNA damage response, signal
            transduction by p53 class mediator resulting in transcription of
            p21 class mediator" evidence=IDA] [GO:0034340 "response to type I
            interferon" evidence=IDA;IMP] [GO:0034341 "response to
            interferon-gamma" evidence=IDA;IMP] [GO:0060337 "type I
            interferon-mediated signaling pathway" evidence=IC] [GO:0070087
            "chromo shadow domain binding" evidence=IPI] [GO:0042802 "identical
            protein binding" evidence=IPI] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=IMP;IDA] [GO:0019900 "kinase
            binding" evidence=IPI] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IDA;IMP] [GO:0003714
            "transcription corepressor activity" evidence=IDA] [GO:0043392
            "negative regulation of DNA binding" evidence=IDA] [GO:0043433
            "negative regulation of sequence-specific DNA binding transcription
            factor activity" evidence=IDA] [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0051271 "negative regulation of cellular component movement"
            evidence=IMP] [GO:0032897 "negative regulation of viral
            transcription" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:0042803 "protein homodimerization activity" evidence=IPI]
            [GO:0008134 "transcription factor binding" evidence=IPI]
            InterPro:IPR009071 InterPro:IPR000770 InterPro:IPR004865
            Pfam:PF01342 Pfam:PF03172 PROSITE:PS50864 PROSITE:PS51414
            SMART:SM00258 Pfam:PF00505 GO:GO:0005737 Reactome:REACT_6900
            GO:GO:0003714 GO:GO:0045892 GO:GO:0019048 GO:GO:0045893
            GO:GO:0060333 GO:GO:0060337 GO:GO:0051091 GO:GO:0005730
            GO:GO:0003677 GO:GO:0016605 GO:GO:0034097 GO:GO:0000122
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0003713 GO:GO:0032526 GO:GO:0051271 GO:GO:0043433
            Gene3D:3.10.390.10 InterPro:IPR010919 SUPFAM:SSF63763 GO:GO:0048384
            GO:GO:0034399 GO:GO:0006978 Pfam:PF09011 GO:GO:0043392
            OrthoDB:EOG44QT09 GO:GO:0034340 GO:GO:0032897 EMBL:AC009949
            EMBL:U36501 EMBL:AF056322 EMBL:M60618 EMBL:AF255565 EMBL:AK293373
            EMBL:AC010149 EMBL:BC011562 EMBL:X95472 EMBL:L79986 EMBL:L79987
            EMBL:L79988 EMBL:AF076675 EMBL:AF378670 IPI:IPI00011675
            IPI:IPI00218324 IPI:IPI00218325 IPI:IPI00218326 IPI:IPI00218327
            IPI:IPI00917048 IPI:IPI00917345 PIR:A37244 RefSeq:NP_001073860.1
            RefSeq:NP_001193630.1 RefSeq:NP_001193631.1 RefSeq:NP_001193632.1
            RefSeq:NP_001193633.1 RefSeq:NP_003104.2 UniGene:Hs.369056 PDB:1H5P
            PDBsum:1H5P ProteinModelPortal:P23497 SMR:P23497 DIP:DIP-5983N
            IntAct:P23497 MINT:MINT-1188807 STRING:P23497 PhosphoSite:P23497
            DMDM:13878931 PaxDb:P23497 PRIDE:P23497 Ensembl:ENST00000264052
            Ensembl:ENST00000340126 Ensembl:ENST00000409341
            Ensembl:ENST00000409897 Ensembl:ENST00000427101 GeneID:6672
            KEGG:hsa:6672 UCSC:uc002vqq.2 UCSC:uc002vqt.3 UCSC:uc002vqu.1
            UCSC:uc010zmb.2 CTD:6672 GeneCards:GC02P231280 HGNC:HGNC:11206
            HPA:HPA016707 HPA:HPA017384 MIM:604585 neXtProt:NX_P23497
            PharmGKB:PA36043 eggNOG:NOG249894 HOVERGEN:HBG057632 KO:K15413
            OMA:TESCEQV ChiTaRS:SP100 EvolutionaryTrace:P23497 GenomeRNAi:6672
            NextBio:26015 ArrayExpress:P23497 Bgee:P23497 CleanEx:HS_SP100
            Genevestigator:P23497 GermOnline:ENSG00000067066 Uniprot:P23497
        Length = 879

 Score = 122 (48.0 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 33/100 (33%), Positives = 53/100 (53%)

Query:    46 AFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNM 105
             AFF+F  E+R + K  HP       V K AG  W + +  +K  + ++A K K  Y K++
Sbjct:   775 AFFLFCSEYRPKIKGEHPGLSIDDVVKKLAG-MWNNTAAADKQFYEKKAAKLKEKYKKDI 833

Query:   106 QDYNKQLADGV-NAAEEN--ESDKSKSEVNDEDDEEGSGE 142
               Y    A G  N+A++   +++KSK +  +E+DEE   E
Sbjct:   834 AAYR---AKGKPNSAKKRVVKAEKSKKKKEEEEDEEDEQE 870


>DICTYBASE|DDB_G0270260 [details] [associations]
            symbol:nhp6 "HMG1/2 (high mobility group)
            box-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0006357 "regulation of transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006325 "chromatin organization"
            evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
            [GO:0000790 "nuclear chromatin" evidence=ISS] [GO:0006974 "response
            to DNA damage stimulus" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006281 "DNA
            repair" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR009071 dictyBase:DDB_G0270260 Pfam:PF00505
            EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003677
            GO:GO:0006281 GO:GO:0006357 GO:GO:0006351 GO:GO:0003682
            eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0000790 GO:GO:0006325 HSSP:P63159
            RefSeq:XP_646657.1 ProteinModelPortal:Q55C24 STRING:Q55C24
            EnsemblProtists:DDB0216420 GeneID:8617629 KEGG:ddi:DDB_G0270260
            OMA:ERVKNAN Uniprot:Q55C24
        Length = 141

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 29/114 (25%), Positives = 52/114 (45%)

Query:    14 DSKLKSKGARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGK 73
             + K+  KG + GK+T                S F  F ++ R   K +HPN  S   +G 
Sbjct:    29 EPKVSKKGKKEGKKTKKKPKDENAPRRYL--SPFIFFSKDHRSVIKNSHPNC-SFGEIGS 85

Query:    74 AAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKS 127
               G++W  +S ++K  + + A + K  +    ++Y+++L     A  E+ SD S
Sbjct:    86 LLGQEWAKISAEDKKKYEKLAAEDKKRWELEKKNYDEKLKTQSQA--ESSSDSS 137


>UNIPROTKB|B4DWU7 [details] [associations]
            symbol:SOX15 "Protein SOX-15" species:9606 "Homo sapiens"
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0043403 "skeletal muscle tissue regeneration"
            evidence=IEA] [GO:0045843 "negative regulation of striated muscle
            tissue development" evidence=IEA] [GO:0045944 "positive regulation
            of transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0048627 "myoblast development" evidence=IEA] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
            GO:GO:0045944 GO:GO:0003682 GO:GO:0045843 GO:GO:0000122
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0043403 EMBL:AC016876 GO:GO:0048627 IPI:IPI00028451
            HGNC:HGNC:11196 HOVERGEN:HBG055512 EMBL:AK301687 SMR:B4DWU7
            STRING:B4DWU7 Ensembl:ENST00000570788 Uniprot:B4DWU7
        Length = 178

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 21/64 (32%), Positives = 38/64 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    R+Q  + +P   + + + K  G +WK + EDEK PFVE A++ ++ + ++
Sbjct:    54 NAFMVWSSAQRRQMAQQNPKMHN-SEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRD 112

Query:   105 MQDY 108
               DY
Sbjct:   113 YPDY 116


>ASPGD|ASPL0000037691 [details] [associations]
            symbol:AN2885 species:162425 "Emericella nidulans"
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
            [GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0070898 "RNA
            polymerase III transcriptional preinitiation complex assembly"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005694 GO:GO:0006355 GO:GO:0043565 GO:GO:0006281
            EMBL:BN001306 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            EMBL:AACD01000051 GO:GO:0031491 HOGENOM:HOG000197861 GO:GO:0051123
            GO:GO:0032301 OMA:FFANDNR OrthoDB:EOG4S7P0P GO:GO:0034724
            GO:GO:0070898 RefSeq:XP_660489.1 ProteinModelPortal:Q5B995
            SMR:Q5B995 STRING:Q5B995 EnsemblFungi:CADANIAT00010204
            GeneID:2874036 KEGG:ani:AN2885.2 Uniprot:Q5B995
        Length = 106

 Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 23/64 (35%), Positives = 34/64 (53%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SA+  F  + R + +E +P   S   VGK  GEKWKS+S+ E+ P+ ++A   K  Y   
Sbjct:    32 SAYMFFANDNRDKVREENPGI-SFGQVGKMLGEKWKSLSDKERKPYEDKAAADKKRYEDE 90

Query:   105 MQDY 108
                Y
Sbjct:    91 KAAY 94


>UNIPROTKB|Q6VVD7 [details] [associations]
            symbol:sox8 "Transcription factor Sox-8" species:8355
            "Xenopus laevis" [GO:0014029 "neural crest formation" evidence=IMP]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0006355
            GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0014029 KO:K09270
            InterPro:IPR022151 Pfam:PF12444 HSSP:P48432 CTD:30812 EMBL:AY324658
            EMBL:BC169521 EMBL:BC169525 RefSeq:NP_001083964.1 UniGene:Xl.29789
            ProteinModelPortal:Q6VVD7 SMR:Q6VVD7 GeneID:399214 KEGG:xla:399214
            Xenbase:XB-GENE-480869 Uniprot:Q6VVD7
        Length = 459

 Score = 117 (46.2 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 23/67 (34%), Positives = 41/67 (61%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ +SE+EK PFVE AE+ +  + K+
Sbjct:   103 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLSENEKRPFVEEAERLRVQHKKD 161

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   162 HPDYKYQ 168


>UNIPROTKB|F1P1Z5 [details] [associations]
            symbol:SOX8 "Transcription factor SOX-8" species:9031
            "Gallus gallus" [GO:0000979 "RNA polymerase II core promoter
            sequence-specific DNA binding" evidence=IEA] [GO:0001649
            "osteoblast differentiation" evidence=IEA] [GO:0001701 "in utero
            embryonic development" evidence=IEA] [GO:0001755 "neural crest cell
            migration" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0007165
            "signal transduction" evidence=IEA] [GO:0007283 "spermatogenesis"
            evidence=IEA] [GO:0007422 "peripheral nervous system development"
            evidence=IEA] [GO:0008134 "transcription factor binding"
            evidence=IEA] [GO:0010817 "regulation of hormone levels"
            evidence=IEA] [GO:0014015 "positive regulation of gliogenesis"
            evidence=IEA] [GO:0033690 "positive regulation of osteoblast
            proliferation" evidence=IEA] [GO:0043066 "negative regulation of
            apoptotic process" evidence=IEA] [GO:0045444 "fat cell
            differentiation" evidence=IEA] [GO:0045662 "negative regulation of
            myoblast differentiation" evidence=IEA] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0046533 "negative
            regulation of photoreceptor cell differentiation" evidence=IEA]
            [GO:0048469 "cell maturation" evidence=IEA] [GO:0048484 "enteric
            nervous system development" evidence=IEA] [GO:0048709
            "oligodendrocyte differentiation" evidence=IEA] [GO:0060009
            "Sertoli cell development" evidence=IEA] [GO:0060018 "astrocyte
            fate commitment" evidence=IEA] [GO:0060221 "retinal rod cell
            differentiation" evidence=IEA] [GO:0060612 "adipose tissue
            development" evidence=IEA] [GO:0061138 "morphogenesis of a
            branching epithelium" evidence=IEA] [GO:0072034 "renal vesicle
            induction" evidence=IEA] [GO:0072197 "ureter morphogenesis"
            evidence=IEA] [GO:0072289 "metanephric nephron tubule formation"
            evidence=IEA] [GO:0090190 "positive regulation of branching
            involved in ureteric bud morphogenesis" evidence=IEA]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0005737
            GO:GO:0045892 GO:GO:0007165 GO:GO:0043066 GO:GO:0045944
            GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0090190 GO:GO:0045444 GO:GO:0000979
            GO:GO:0010817 GO:GO:0033690 GO:GO:0045662
            GeneTree:ENSGT00670000097649 InterPro:IPR022151 Pfam:PF12444
            IPI:IPI00593054 OMA:DQSHGSP GO:GO:0072034 EMBL:AADN02023690
            Ensembl:ENSGALT00000008449 Uniprot:F1P1Z5
        Length = 470

 Score = 117 (46.2 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 23/67 (34%), Positives = 41/67 (61%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ +SE+EK PFVE AE+ +  + K+
Sbjct:   114 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLSENEKRPFVEEAERLRVQHKKD 172

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   173 HPDYKYQ 179


>UNIPROTKB|P57074 [details] [associations]
            symbol:SOX8 "Transcription factor SOX-8" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003170 "heart valve
            development" evidence=IEP] [GO:0048709 "oligodendrocyte
            differentiation" evidence=IEP] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0048709 GO:GO:0003170 HOGENOM:HOG000108876 HOVERGEN:HBG002061
            KO:K09270 InterPro:IPR022151 Pfam:PF12444 EMBL:AF228664
            IPI:IPI00593054 RefSeq:NP_990062.1 UniGene:Gga.4309
            ProteinModelPortal:P57074 SMR:P57074 GeneID:395483 KEGG:gga:395483
            CTD:30812 eggNOG:NOG324597 InParanoid:P57074 OrthoDB:EOG4ZKJMD
            NextBio:20815563 Uniprot:P57074
        Length = 470

 Score = 117 (46.2 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 23/67 (34%), Positives = 41/67 (61%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ +SE+EK PFVE AE+ +  + K+
Sbjct:   114 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLSENEKRPFVEEAERLRVQHKKD 172

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   173 HPDYKYQ 179


>UNIPROTKB|Q66JF1 [details] [associations]
            symbol:sox11 "Transcription factor Sox-11" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0007399 "nervous system
            development" evidence=ISS] [GO:0043565 "sequence-specific DNA
            binding" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0007399 GO:GO:0030154 GO:GO:0006355
            GO:GO:0043565 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 CTD:6664 KO:K09268
            InterPro:IPR017386 PIRSF:PIRSF038098 eggNOG:NOG130659 EMBL:AC148407
            EMBL:BC080939 RefSeq:NP_001008053.1 UniGene:Str.15716 HSSP:P48432
            ProteinModelPortal:Q66JF1 SMR:Q66JF1 STRING:Q66JF1 GeneID:493415
            KEGG:xtr:493415 Xenbase:XB-GENE-483418 Uniprot:Q66JF1
        Length = 383

 Score = 99 (39.9 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
 Identities = 21/64 (32%), Positives = 38/64 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  E  P+  + A + K  G++WK +++ EK PF+  AE+ +    K+
Sbjct:    53 NAFMVWSKIERRKIMEQSPDMHN-AEISKRLGKRWKMLNDSEKIPFIREAERLRL---KH 108

Query:   105 MQDY 108
             M DY
Sbjct:   109 MADY 112

 Score = 36 (17.7 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
 Identities = 6/25 (24%), Positives = 13/25 (52%)

Query:   114 DGVNAAEENESDKSKSEVNDEDDEE 138
             D     E+ E D+ +  +  E+++E
Sbjct:   204 DDEEEEEDEEEDELQIRIKQEEEDE 228


>UNIPROTKB|A6PVD3 [details] [associations]
            symbol:SOX10 "Transcription factor SOX-10" species:9606
            "Homo sapiens" [GO:0000978 "RNA polymerase II core promoter
            proximal region sequence-specific DNA binding" evidence=IEA]
            [GO:0000980 "RNA polymerase II distal enhancer sequence-specific
            DNA binding" evidence=IEA] [GO:0001701 "in utero embryonic
            development" evidence=IEA] [GO:0001755 "neural crest cell
            migration" evidence=IEA] [GO:0002052 "positive regulation of
            neuroblast proliferation" evidence=IEA] [GO:0003682 "chromatin
            binding" evidence=IEA] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0007422 "peripheral nervous system development" evidence=IEA]
            [GO:0008134 "transcription factor binding" evidence=IEA]
            [GO:0014015 "positive regulation of gliogenesis" evidence=IEA]
            [GO:0030318 "melanocyte differentiation" evidence=IEA] [GO:0031315
            "extrinsic to mitochondrial outer membrane" evidence=IEA]
            [GO:0043066 "negative regulation of apoptotic process"
            evidence=IEA] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0048469 "cell maturation" evidence=IEA] [GO:0048484 "enteric
            nervous system development" evidence=IEA] [GO:0048546 "digestive
            tract morphogenesis" evidence=IEA] [GO:0048589 "developmental
            growth" evidence=IEA] [GO:0048709 "oligodendrocyte differentiation"
            evidence=IEA] [GO:0048863 "stem cell differentiation" evidence=IEA]
            [GO:0090090 "negative regulation of canonical Wnt receptor
            signaling pathway" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0043066 GO:GO:0001755 GO:GO:0001701
            GO:GO:0045944 GO:GO:0048863 GO:GO:0007422 GO:GO:0003682
            GO:GO:0003705 GO:GO:0000980 GO:GO:0000978 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0048589
            GO:GO:0090090 GO:GO:0030318 GO:GO:0048709 GO:GO:0031315
            GO:GO:0048484 GO:GO:0002052 GO:GO:0048546 GO:GO:0048469
            EMBL:AL031587 GO:GO:0014015 HOVERGEN:HBG002061 InterPro:IPR022151
            Pfam:PF12444 UniGene:Hs.376984 HGNC:HGNC:11190 IPI:IPI00908479
            SMR:A6PVD3 STRING:A6PVD3 Ensembl:ENST00000427770 UCSC:uc010gxj.3
            HOGENOM:HOG000070122 Uniprot:A6PVD3
        Length = 213

 Score = 110 (43.8 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 20/67 (29%), Positives = 40/67 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ ++E +K PF+E AE+ +  + K+
Sbjct:   109 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKD 167

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   168 HPDYKYQ 174


>RGD|69351 [details] [associations]
            symbol:Sox11 "SRY (sex determining region Y)-box 11" species:10116
           "Rattus norvegicus" [GO:0000122 "negative regulation of
           transcription from RNA polymerase II promoter" evidence=ISO;ISS]
           [GO:0000976 "transcription regulatory region sequence-specific DNA
           binding" evidence=ISO;IDA] [GO:0000979 "RNA polymerase II core
           promoter sequence-specific DNA binding" evidence=IEA;ISO]
           [GO:0001071 "nucleic acid binding transcription factor activity"
           evidence=ISO;ISS] [GO:0001077 "RNA polymerase II core promoter
           proximal region sequence-specific DNA binding transcription factor
           activity involved in positive regulation of transcription"
           evidence=ISO;IDA] [GO:0001105 "RNA polymerase II transcription
           coactivator activity" evidence=ISO;IDA] [GO:0001158 "enhancer
           sequence-specific DNA binding" evidence=ISO;ISS] [GO:0001501
           "skeletal system development" evidence=ISO;ISS] [GO:0001822 "kidney
           development" evidence=IEP] [GO:0001841 "neural tube formation"
           evidence=ISO;ISS] [GO:0002089 "lens morphogenesis in camera-type
           eye" evidence=ISO;ISS] [GO:0003151 "outflow tract morphogenesis"
           evidence=ISO;ISS] [GO:0003211 "cardiac ventricle formation"
           evidence=ISO;ISS] [GO:0003357 "noradrenergic neuron differentiation"
           evidence=ISO;IMP] [GO:0003677 "DNA binding" evidence=TAS]
           [GO:0003700 "sequence-specific DNA binding transcription factor
           activity" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
           [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
           evidence=ISO;ISS] [GO:0006412 "translation" evidence=ISO]
           [GO:0008135 "translation factor activity, nucleic acid binding"
           evidence=ISO;ISS] [GO:0008283 "cell proliferation" evidence=IEP]
           [GO:0008284 "positive regulation of cell proliferation"
           evidence=ISO;ISS] [GO:0010628 "positive regulation of gene
           expression" evidence=ISO;ISS] [GO:0010629 "negative regulation of
           gene expression" evidence=ISO;ISS] [GO:0014003 "oligodendrocyte
           development" evidence=IEP] [GO:0014009 "glial cell proliferation"
           evidence=ISO;ISS] [GO:0014032 "neural crest cell development"
           evidence=ISO;ISS] [GO:0017015 "regulation of transforming growth
           factor beta receptor signaling pathway" evidence=IEA;ISO]
           [GO:0021510 "spinal cord development" evidence=ISO;ISS] [GO:0021782
           "glial cell development" evidence=ISO;ISS] [GO:0030182 "neuron
           differentiation" evidence=ISO] [GO:0030513 "positive regulation of
           BMP signaling pathway" evidence=ISO;ISS] [GO:0035332 "positive
           regulation of hippo signaling cascade" evidence=ISO;ISS] [GO:0035914
           "skeletal muscle cell differentiation" evidence=ISO] [GO:0045666
           "positive regulation of neuron differentiation" evidence=ISO;ISS]
           [GO:0045669 "positive regulation of osteoblast differentiation"
           evidence=ISO;ISS] [GO:0045778 "positive regulation of ossification"
           evidence=ISO;ISS] [GO:0045893 "positive regulation of transcription,
           DNA-dependent" evidence=ISO;ISS] [GO:0045944 "positive regulation of
           transcription from RNA polymerase II promoter" evidence=ISO;IMP]
           [GO:0046887 "positive regulation of hormone secretion"
           evidence=ISO;ISS] [GO:0048485 "sympathetic nervous system
           development" evidence=ISO;ISS] [GO:0048557 "embryonic digestive
           tract morphogenesis" evidence=ISO;ISS] [GO:0048704 "embryonic
           skeletal system morphogenesis" evidence=ISO;ISS] [GO:0050672
           "negative regulation of lymphocyte proliferation" evidence=IEA;ISO]
           [GO:0050769 "positive regulation of neurogenesis" evidence=ISO;ISS]
           [GO:0060022 "hard palate development" evidence=ISO;ISS] [GO:0060023
           "soft palate development" evidence=ISO;ISS] [GO:0060174 "limb bud
           formation" evidence=ISO;ISS] [GO:0060253 "negative regulation of
           glial cell proliferation" evidence=ISO;ISS] [GO:0060412 "ventricular
           septum morphogenesis" evidence=ISO;ISS] [GO:0060425 "lung
           morphogenesis" evidence=ISO;ISS] [GO:0060548 "negative regulation of
           cell death" evidence=ISO;ISS] [GO:0060563 "neuroepithelial cell
           differentiation" evidence=ISO;ISS] [GO:0061029 "eyelid development
           in camera-type eye" evidence=ISO;ISS] [GO:0061053 "somite
           development" evidence=ISO;ISS] [GO:0061303 "cornea development in
           camera-type eye" evidence=ISO;ISS] [GO:0061386 "closure of optic
           fissure" evidence=ISO;ISS] [GO:0072395 "signal transduction involved
           in cell cycle checkpoint" evidence=ISO] [GO:2000648 "positive
           regulation of stem cell proliferation" evidence=ISO;ISS] [GO:2000678
           "negative regulation of transcription regulatory region DNA binding"
           evidence=IMP] [GO:2001111 "positive regulation of lens epithelial
           cell proliferation" evidence=ISO;ISS] InterPro:IPR009071
           Pfam:PF00505 RGD:69351 GO:GO:0005634 GO:GO:0005737 GO:GO:0008135
           GO:GO:0001077 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
           SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0014009 GO:GO:0001822
           GO:GO:0050769 GO:GO:0030513 GO:GO:0045669 GO:GO:0045666
           GO:GO:0060548 GO:GO:0021510 GO:GO:0014032 GO:GO:0048704
           GO:GO:0001105 GO:GO:0000979 GO:GO:0061303 GO:GO:0061029
           GO:GO:0003151 GO:GO:0048485 GO:GO:0001158 GO:GO:0014003
           GO:GO:0060563 GO:GO:0045778 GO:GO:0001841 GO:GO:0017015
           GO:GO:0002089 GO:GO:0060412 GO:GO:0046887 GO:GO:0060174
           GO:GO:0060023 GO:GO:0060022 GO:GO:2000648 GO:GO:0060253
           GO:GO:0048557 GO:GO:0060425 GO:GO:0061386 GO:GO:0050672
           GO:GO:2000678 GO:GO:0003357 GO:GO:0061053 GO:GO:0003211 CTD:6664
           HOVERGEN:HBG005040 KO:K09268 InterPro:IPR017386 PIRSF:PIRSF038098
           eggNOG:NOG130659 HOGENOM:HOG000231874 OMA:TEEGEFM OrthoDB:EOG4QVCCX
           GO:GO:0035332 GO:GO:2001111 GO:GO:0072404
           GeneTree:ENSGT00690000101789 EMBL:AJ004858 IPI:IPI00202666
           RefSeq:NP_445801.1 UniGene:Rn.162854 ProteinModelPortal:P0C1G9
           SMR:P0C1G9 STRING:P0C1G9 Ensembl:ENSRNOT00000045963 GeneID:84046
           KEGG:rno:84046 InParanoid:P0C1G9 NextBio:616629
           Genevestigator:P0C1G9 Uniprot:P0C1G9
        Length = 395

 Score = 98 (39.6 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  E  P+  + A + K  G++WK + + EK PF+  AE+ +    K+
Sbjct:    54 NAFMVWSKIERRKIMEQSPDMHN-AEISKRLGKRWKMLKDSEKIPFIREAERLRL---KH 109

Query:   105 MQDY 108
             M DY
Sbjct:   110 MADY 113

 Score = 37 (18.1 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query:   120 EENESD----KSKSEVNDEDDE 137
             E++E D    + K + +D+DDE
Sbjct:   193 EDDEDDELQLRPKPDADDDDDE 214

 Score = 36 (17.7 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query:   133 DEDDEEGSGEVFLQL 147
             D+DDEE   +  LQL
Sbjct:   188 DDDDEEDDEDDELQL 202


>RGD|1309072 [details] [associations]
            symbol:Sox8 "SRY (sex determining region Y)-box 8" species:10116
            "Rattus norvegicus" [GO:0000979 "RNA polymerase II core promoter
            sequence-specific DNA binding" evidence=ISO;ISS] [GO:0001649
            "osteoblast differentiation" evidence=ISO;ISS] [GO:0001701 "in
            utero embryonic development" evidence=ISO;ISS] [GO:0001755 "neural
            crest cell migration" evidence=ISO;ISS] [GO:0003674
            "molecular_function" evidence=ND] [GO:0003677 "DNA binding"
            evidence=ISO] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA;ISO] [GO:0005575
            "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
            [GO:0007165 "signal transduction" evidence=ISO;ISS] [GO:0007283
            "spermatogenesis" evidence=ISO;ISS] [GO:0007422 "peripheral nervous
            system development" evidence=ISO;ISS] [GO:0008134 "transcription
            factor binding" evidence=IEA;ISO] [GO:0008150 "biological_process"
            evidence=ND] [GO:0008584 "male gonad development" evidence=ISO;ISS]
            [GO:0010628 "positive regulation of gene expression" evidence=ISO]
            [GO:0010817 "regulation of hormone levels" evidence=ISO;ISS]
            [GO:0014015 "positive regulation of gliogenesis" evidence=ISO;ISS]
            [GO:0033690 "positive regulation of osteoblast proliferation"
            evidence=ISO;ISS] [GO:0035914 "skeletal muscle cell
            differentiation" evidence=ISO] [GO:0043066 "negative regulation of
            apoptotic process" evidence=ISO;ISS] [GO:0043565 "sequence-specific
            DNA binding" evidence=ISO] [GO:0045165 "cell fate commitment"
            evidence=ISO;ISS] [GO:0045444 "fat cell differentiation"
            evidence=ISO;ISS] [GO:0045662 "negative regulation of myoblast
            differentiation" evidence=ISO;ISS] [GO:0045892 "negative regulation
            of transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045893
            "positive regulation of transcription, DNA-dependent"
            evidence=ISO;ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0046533
            "negative regulation of photoreceptor cell differentiation"
            evidence=IEA;ISO] [GO:0048469 "cell maturation" evidence=IEA;ISO]
            [GO:0048484 "enteric nervous system development" evidence=ISO;ISS]
            [GO:0048709 "oligodendrocyte differentiation" evidence=ISO;ISS]
            [GO:0060009 "Sertoli cell development" evidence=ISO;ISS]
            [GO:0060018 "astrocyte fate commitment" evidence=IEA;ISO]
            [GO:0060041 "retina development in camera-type eye"
            evidence=ISO;ISS] [GO:0060221 "retinal rod cell differentiation"
            evidence=ISO;ISS] [GO:0060612 "adipose tissue development"
            evidence=ISO;ISS] [GO:0061138 "morphogenesis of a branching
            epithelium" evidence=ISO;ISS] [GO:0072034 "renal vesicle induction"
            evidence=ISO;ISS] [GO:0072197 "ureter morphogenesis"
            evidence=ISO;ISS] [GO:0072289 "metanephric nephron tubule
            formation" evidence=ISO;ISS] [GO:0090184 "positive regulation of
            kidney development" evidence=ISO;ISS] [GO:0090190 "positive
            regulation of branching involved in ureteric bud morphogenesis"
            evidence=ISO;ISS] InterPro:IPR009071 Pfam:PF00505 RGD:1309072
            GO:GO:0005634 GO:GO:0005737 GO:GO:0045892 GO:GO:0007165
            GO:GO:0045893 GO:GO:0043066 GO:GO:0001755 GO:GO:0001701
            GO:GO:0045944 GO:GO:0007422 GO:GO:0060612 GO:GO:0003700
            GO:GO:0007283 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0060009 GO:GO:0090190 GO:GO:0001649
            GO:GO:0045444 GO:GO:0000979 EMBL:CH473948 GO:GO:0048709
            GO:GO:0048484 GO:GO:0010817 GO:GO:0048469 GO:GO:0033690
            GO:GO:0045662 GO:GO:0046533 GO:GO:0060018 GO:GO:0014015
            GO:GO:0072289 GO:GO:0072197 GeneTree:ENSGT00670000097649 KO:K09270
            InterPro:IPR022151 Pfam:PF12444 CTD:30812 OrthoDB:EOG4ZKJMD
            OMA:DQSHGSP GO:GO:0061138 GO:GO:0072034 GO:GO:0060221
            IPI:IPI00368755 RefSeq:NP_001100459.1 UniGene:Rn.141194
            Ensembl:ENSRNOT00000025494 GeneID:302993 KEGG:rno:302993
            UCSC:RGD:1309072 NextBio:650512 Uniprot:D3ZR96
        Length = 463

 Score = 116 (45.9 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 23/67 (34%), Positives = 40/67 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ +SE EK PFVE AE+ +  + K+
Sbjct:   104 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLSESEKRPFVEEAERLRVQHKKD 162

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   163 HPDYKYQ 169


>MGI|MGI:98370 [details] [associations]
            symbol:Sox8 "SRY-box containing gene 8" species:10090 "Mus
            musculus" [GO:0000979 "RNA polymerase II core promoter
            sequence-specific DNA binding" evidence=IDA] [GO:0001649
            "osteoblast differentiation" evidence=IMP] [GO:0001701 "in utero
            embryonic development" evidence=IGI] [GO:0001755 "neural crest cell
            migration" evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IMP;IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
            "cytoplasm" evidence=IMP;IDA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0007165 "signal
            transduction" evidence=IMP] [GO:0007283 "spermatogenesis"
            evidence=IGI;IMP] [GO:0007422 "peripheral nervous system
            development" evidence=IGI] [GO:0008134 "transcription factor
            binding" evidence=IPI] [GO:0008584 "male gonad development"
            evidence=IGI] [GO:0010628 "positive regulation of gene expression"
            evidence=IGI] [GO:0010817 "regulation of hormone levels"
            evidence=IMP] [GO:0014015 "positive regulation of gliogenesis"
            evidence=IMP] [GO:0033690 "positive regulation of osteoblast
            proliferation" evidence=IMP] [GO:0035914 "skeletal muscle cell
            differentiation" evidence=IMP] [GO:0043066 "negative regulation of
            apoptotic process" evidence=IMP] [GO:0043565 "sequence-specific DNA
            binding" evidence=IDA] [GO:0045165 "cell fate commitment"
            evidence=IGI] [GO:0045444 "fat cell differentiation" evidence=IMP]
            [GO:0045662 "negative regulation of myoblast differentiation"
            evidence=IDA] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=IMP;IDA] [GO:0045893 "positive regulation
            of transcription, DNA-dependent" evidence=IDA;IMP] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=ISO;IDA] [GO:0046533 "negative regulation of
            photoreceptor cell differentiation" evidence=IGI] [GO:0048469 "cell
            maturation" evidence=IGI;IMP] [GO:0048484 "enteric nervous system
            development" evidence=IMP] [GO:0048709 "oligodendrocyte
            differentiation" evidence=IMP] [GO:0060009 "Sertoli cell
            development" evidence=IGI] [GO:0060018 "astrocyte fate commitment"
            evidence=IGI] [GO:0060041 "retina development in camera-type eye"
            evidence=IGI] [GO:0060221 "retinal rod cell differentiation"
            evidence=IGI] [GO:0060612 "adipose tissue development"
            evidence=IMP] [GO:0061138 "morphogenesis of a branching epithelium"
            evidence=IGI] [GO:0072034 "renal vesicle induction" evidence=IMP]
            [GO:0072197 "ureter morphogenesis" evidence=IGI] [GO:0072289
            "metanephric nephron tubule formation" evidence=IGI] [GO:0090184
            "positive regulation of kidney development" evidence=IGI]
            [GO:0090190 "positive regulation of branching involved in ureteric
            bud morphogenesis" evidence=IMP] InterPro:IPR009071 MGI:MGI:98370
            Pfam:PF00505 GO:GO:0005634 GO:GO:0005737 GO:GO:0045892
            GO:GO:0007165 GO:GO:0043066 GO:GO:0001755 GO:GO:0001701
            GO:GO:0045944 GO:GO:0007422 GO:GO:0060612 GO:GO:0003700
            GO:GO:0007283 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0060009 GO:GO:0090190
            GO:GO:0001649 GO:GO:0045444 GO:GO:0035914 GO:GO:0000979
            GO:GO:0048709 GO:GO:0048484 GO:GO:0010817 GO:GO:0048469
            GO:GO:0033690 GO:GO:0045662 GO:GO:0046533 GO:GO:0060018
            GO:GO:0014015 GO:GO:0072289 GO:GO:0072197 HOGENOM:HOG000108876
            HOVERGEN:HBG002061 KO:K09270 InterPro:IPR022151 Pfam:PF12444
            CTD:30812 eggNOG:NOG324597 OrthoDB:EOG4ZKJMD OMA:DQSHGSP
            ChiTaRS:SOX8 GO:GO:0061138 GO:GO:0072034 GO:GO:0060221
            EMBL:AF191325 EMBL:BC085619 EMBL:Z18957 IPI:IPI00111141 PIR:S30246
            RefSeq:NP_035577.1 UniGene:Mm.258220 ProteinModelPortal:Q04886
            SMR:Q04886 IntAct:Q04886 STRING:Q04886 PhosphoSite:Q04886
            PRIDE:Q04886 Ensembl:ENSMUST00000025003 GeneID:20681 KEGG:mmu:20681
            InParanoid:Q04886 NextBio:299189 Bgee:Q04886 CleanEx:MM_SOX8
            Genevestigator:Q04886 GermOnline:ENSMUSG00000024176 Uniprot:Q04886
        Length = 464

 Score = 116 (45.9 bits), Expect = 3.5e-06, P = 3.5e-06
 Identities = 23/67 (34%), Positives = 40/67 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ +SE EK PFVE AE+ +  + K+
Sbjct:   104 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLSESEKRPFVEEAERLRVQHKKD 162

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   163 HPDYKYQ 169


>UNIPROTKB|F1MBL5 [details] [associations]
            symbol:SOX8 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0090190 "positive regulation of branching involved in
            ureteric bud morphogenesis" evidence=IEA] [GO:0072289 "metanephric
            nephron tubule formation" evidence=IEA] [GO:0072197 "ureter
            morphogenesis" evidence=IEA] [GO:0072034 "renal vesicle induction"
            evidence=IEA] [GO:0061138 "morphogenesis of a branching epithelium"
            evidence=IEA] [GO:0060612 "adipose tissue development"
            evidence=IEA] [GO:0060221 "retinal rod cell differentiation"
            evidence=IEA] [GO:0060018 "astrocyte fate commitment" evidence=IEA]
            [GO:0060009 "Sertoli cell development" evidence=IEA] [GO:0048709
            "oligodendrocyte differentiation" evidence=IEA] [GO:0048484
            "enteric nervous system development" evidence=IEA] [GO:0048469
            "cell maturation" evidence=IEA] [GO:0046533 "negative regulation of
            photoreceptor cell differentiation" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0045662 "negative
            regulation of myoblast differentiation" evidence=IEA] [GO:0045444
            "fat cell differentiation" evidence=IEA] [GO:0043066 "negative
            regulation of apoptotic process" evidence=IEA] [GO:0033690
            "positive regulation of osteoblast proliferation" evidence=IEA]
            [GO:0014015 "positive regulation of gliogenesis" evidence=IEA]
            [GO:0010817 "regulation of hormone levels" evidence=IEA]
            [GO:0008134 "transcription factor binding" evidence=IEA]
            [GO:0007422 "peripheral nervous system development" evidence=IEA]
            [GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007165 "signal
            transduction" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=IEA]
            [GO:0001755 "neural crest cell migration" evidence=IEA] [GO:0001701
            "in utero embryonic development" evidence=IEA] [GO:0001649
            "osteoblast differentiation" evidence=IEA] [GO:0000979 "RNA
            polymerase II core promoter sequence-specific DNA binding"
            evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            GO:GO:0005737 GO:GO:0045892 GO:GO:0007165 GO:GO:0043066
            GO:GO:0001755 GO:GO:0001701 GO:GO:0045944 GO:GO:0007422
            GO:GO:0060612 GO:GO:0003700 GO:GO:0007283 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0060009
            GO:GO:0090190 GO:GO:0001649 GO:GO:0045444 GO:GO:0000979
            GO:GO:0048709 GO:GO:0048484 GO:GO:0010817 GO:GO:0048469
            GO:GO:0033690 GO:GO:0045662 GO:GO:0046533 GO:GO:0060018
            GO:GO:0014015 GO:GO:0072289 GO:GO:0072197
            GeneTree:ENSGT00670000097649 InterPro:IPR022151 Pfam:PF12444
            OMA:DQSHGSP GO:GO:0061138 GO:GO:0072034 GO:GO:0060221
            EMBL:DAAA02057285 IPI:IPI00696341 Ensembl:ENSBTAT00000027633
            Uniprot:F1MBL5
        Length = 468

 Score = 116 (45.9 bits), Expect = 3.5e-06, P = 3.5e-06
 Identities = 23/67 (34%), Positives = 40/67 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ +SE EK PFVE AE+ +  + K+
Sbjct:   113 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLSESEKRPFVEEAERLRVQHKKD 171

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   172 HPDYKYQ 178


>FB|FBgn0011764 [details] [associations]
            symbol:Dsp1 "Dorsal switch protein 1" species:7227
            "Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IC;IDA]
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IMP;IDA] [GO:0043388 "positive
            regulation of DNA binding" evidence=IDA] [GO:0003677 "DNA binding"
            evidence=IDA] [GO:0017025 "TBP-class protein binding" evidence=IPI]
            [GO:0017055 "negative regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IDA]
            [GO:0032502 "developmental process" evidence=IMP] [GO:0008134
            "transcription factor binding" evidence=IPI] [GO:0006338 "chromatin
            remodeling" evidence=IMP] [GO:0007379 "segment specification"
            evidence=IMP] [GO:0008301 "DNA binding, bending" evidence=IDA]
            [GO:0035218 "leg disc development" evidence=IMP] [GO:0008348
            "negative regulation of antimicrobial humoral response"
            evidence=IGI;IMP] [GO:0005700 "polytene chromosome" evidence=IDA]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 EMBL:AE014298 GO:GO:0006338 eggNOG:COG5648
            GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0003697 GO:GO:0007379 GO:GO:0005700
            GO:GO:0043388 Pfam:PF09011 GO:GO:0006268
            GeneTree:ENSGT00560000076898 EMBL:U13881 EMBL:X89811 EMBL:X81456
            EMBL:AY060841 PIR:JC6179 PIR:S50068 RefSeq:NP_542446.2
            RefSeq:NP_727959.2 RefSeq:NP_727960.1 RefSeq:NP_727961.1
            RefSeq:NP_996485.1 UniGene:Dm.2879 ProteinModelPortal:Q24537
            SMR:Q24537 DIP:DIP-29511N MINT:MINT-344326 STRING:Q24537
            PaxDb:Q24537 PRIDE:Q24537 EnsemblMetazoa:FBtr0089263 GeneID:117294
            KEGG:dme:Dmel_CG12223 CTD:117294 FlyBase:FBgn0011764
            InParanoid:Q24537 KO:K10802 OrthoDB:EOG480GCJ ChiTaRS:Dsp1
            GenomeRNAi:117294 NextBio:841819 Bgee:Q24537 GermOnline:CG12223
            GO:GO:0035218 GO:GO:0008348 GO:GO:0017055 Uniprot:Q24537
        Length = 393

 Score = 114 (45.2 bits), Expect = 4.4e-06, P = 4.4e-06
 Identities = 23/65 (35%), Positives = 37/65 (56%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSV-ATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             +A+  F++  R++ K+ HP+   + A   +   E+WK+M + EK  F E AEK K  Y  
Sbjct:   184 TAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEA 243

Query:   104 NMQDY 108
              MQ+Y
Sbjct:   244 EMQNY 248


>UNIPROTKB|P35716 [details] [associations]
            symbol:SOX11 "Transcription factor SOX-11" species:9606
            "Homo sapiens" [GO:0001822 "kidney development" evidence=IEA]
            [GO:0014003 "oligodendrocyte development" evidence=IEA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0008135 "translation factor activity,
            nucleic acid binding" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:2001111 "positive regulation of lens epithelial
            cell proliferation" evidence=ISS] [GO:0045944 "positive regulation
            of transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0000979 "RNA polymerase II core promoter sequence-specific DNA
            binding" evidence=IDA] [GO:0001501 "skeletal system development"
            evidence=ISS] [GO:0001841 "neural tube formation" evidence=ISS]
            [GO:0003211 "cardiac ventricle formation" evidence=ISS] [GO:0014009
            "glial cell proliferation" evidence=ISS] [GO:0014032 "neural crest
            cell development" evidence=ISS] [GO:0021510 "spinal cord
            development" evidence=ISS] [GO:0021782 "glial cell development"
            evidence=ISS] [GO:0001071 "nucleic acid binding transcription
            factor activity" evidence=ISS] [GO:0035332 "positive regulation of
            hippo signaling cascade" evidence=ISS] [GO:0046887 "positive
            regulation of hormone secretion" evidence=ISS] [GO:0060174 "limb
            bud formation" evidence=ISS] [GO:0060548 "negative regulation of
            cell death" evidence=ISS] [GO:0060563 "neuroepithelial cell
            differentiation" evidence=ISS] [GO:0061053 "somite development"
            evidence=ISS] [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=IDA] [GO:0001158
            "enhancer sequence-specific DNA binding" evidence=IDA] [GO:0000976
            "transcription regulatory region sequence-specific DNA binding"
            evidence=ISS] [GO:0001105 "RNA polymerase II transcription
            coactivator activity" evidence=ISS] [GO:0001077 "RNA polymerase II
            core promoter proximal region sequence-specific DNA binding
            transcription factor activity involved in positive regulation of
            transcription" evidence=ISS] [GO:2000678 "negative regulation of
            transcription regulatory region DNA binding" evidence=ISS]
            [GO:0017015 "regulation of transforming growth factor beta receptor
            signaling pathway" evidence=IEP] [GO:0045778 "positive regulation
            of ossification" evidence=IMP] [GO:0045669 "positive regulation of
            osteoblast differentiation" evidence=IMP] [GO:2000648 "positive
            regulation of stem cell proliferation" evidence=IMP] [GO:0072395
            "signal transduction involved in cell cycle checkpoint"
            evidence=IEP] [GO:0060253 "negative regulation of glial cell
            proliferation" evidence=IMP] [GO:0045666 "positive regulation of
            neuron differentiation" evidence=IMP] [GO:0010629 "negative
            regulation of gene expression" evidence=IMP] [GO:0010628 "positive
            regulation of gene expression" evidence=IMP] [GO:0050672 "negative
            regulation of lymphocyte proliferation" evidence=IMP] [GO:0003151
            "outflow tract morphogenesis" evidence=ISS] [GO:0048557 "embryonic
            digestive tract morphogenesis" evidence=ISS] [GO:0048704 "embryonic
            skeletal system morphogenesis" evidence=ISS] [GO:0060022 "hard
            palate development" evidence=ISS] [GO:0060023 "soft palate
            development" evidence=ISS] [GO:0060412 "ventricular septum
            morphogenesis" evidence=ISS] [GO:0060425 "lung morphogenesis"
            evidence=ISS] [GO:0061029 "eyelid development in camera-type eye"
            evidence=ISS] [GO:0030182 "neuron differentiation" evidence=IEP]
            [GO:0002089 "lens morphogenesis in camera-type eye" evidence=ISS]
            [GO:0030513 "positive regulation of BMP signaling pathway"
            evidence=ISS] [GO:0061303 "cornea development in camera-type eye"
            evidence=ISS] [GO:0061386 "closure of optic fissure" evidence=ISS]
            [GO:0050769 "positive regulation of neurogenesis" evidence=ISS]
            [GO:0008284 "positive regulation of cell proliferation"
            evidence=ISS] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0003357 "noradrenergic neuron
            differentiation" evidence=ISS] [GO:0048485 "sympathetic nervous
            system development" evidence=ISS] [GO:0006412 "translation"
            evidence=IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008135 GO:GO:0001077 GO:GO:0000122
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0014009 GO:GO:0001822 GO:GO:0050769 GO:GO:0030513
            GO:GO:0045669 GO:GO:0045666 GO:GO:0060548 GO:GO:0021510
            GO:GO:0014032 GO:GO:0048704 GO:GO:0001105 GO:GO:0000979
            GO:GO:0061303 GO:GO:0061029 GO:GO:0003151 GO:GO:0048485
            GO:GO:0001158 GO:GO:0014003 GO:GO:0060563 GO:GO:0045778
            GO:GO:0001841 GO:GO:0017015 GO:GO:0002089 GO:GO:0060412
            GO:GO:0046887 GO:GO:0060174 GO:GO:0060023 GO:GO:0060022
            GO:GO:2000648 GO:GO:0060253 GO:GO:0048557 GO:GO:0060425
            GO:GO:0061386 GO:GO:0050672 GO:GO:2000678 GO:GO:0021782
            GO:GO:0003357 GO:GO:0061053 GO:GO:0003211 CTD:6664
            HOVERGEN:HBG005040 KO:K09268 InterPro:IPR017386 PIRSF:PIRSF038098
            EMBL:U23752 EMBL:AB028641 EMBL:AC108025 EMBL:X73038 IPI:IPI00020435
            PIR:G01758 PIR:S34118 RefSeq:NP_003099.1 UniGene:Hs.432638
            ProteinModelPortal:P35716 SMR:P35716 STRING:P35716
            PhosphoSite:P35716 DMDM:1351142 PaxDb:P35716 PRIDE:P35716
            DNASU:6664 Ensembl:ENST00000322002 GeneID:6664 KEGG:hsa:6664
            UCSC:uc002qyj.3 GeneCards:GC02P005834 HGNC:HGNC:11191 HPA:CAB009378
            HPA:CAB056152 HPA:HPA000536 MIM:600898 neXtProt:NX_P35716
            PharmGKB:PA36028 eggNOG:NOG130659 HOGENOM:HOG000231874
            InParanoid:P35716 OMA:TEEGEFM OrthoDB:EOG4QVCCX ChiTaRS:SOX11
            GenomeRNAi:6664 NextBio:25981 ArrayExpress:P35716 Bgee:P35716
            CleanEx:HS_SOX11 Genevestigator:P35716 GermOnline:ENSG00000176887
            GO:GO:0035332 GO:GO:2001111 GO:GO:0072404 Uniprot:P35716
        Length = 441

 Score = 99 (39.9 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
 Identities = 26/97 (26%), Positives = 46/97 (47%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  E  P+  + A + K  G++WK + + EK PF+  AE+ +    K+
Sbjct:    54 NAFMVWSKIERRKIMEQSPDMHN-AEISKRLGKRWKMLKDSEKIPFIREAERLRL---KH 109

Query:   105 MQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEGSG 141
             M DY           + + S K  +  + E    G G
Sbjct:   110 MADYPDYKYRPRKKPKMDPSAKPSASQSPEKSAAGGG 146

 Score = 36 (17.7 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
 Identities = 6/15 (40%), Positives = 11/15 (73%)

Query:   133 DEDDEEGSGEVFLQL 147
             D+DD++   E+ LQ+
Sbjct:   225 DDDDDDDDDELQLQI 239

 Score = 34 (17.0 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query:   133 DEDDEEGSGEVFLQL 147
             DEDD++   +  LQL
Sbjct:   223 DEDDDDDDDDDELQL 237


>UNIPROTKB|E1B9L6 [details] [associations]
            symbol:SOX15 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0048627 "myoblast development" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0045843 "negative
            regulation of striated muscle tissue development" evidence=IEA]
            [GO:0043403 "skeletal muscle tissue regeneration" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0000122 "negative
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            GO:GO:0005737 GO:GO:0003677 GO:GO:0045944 GO:GO:0003682
            GO:GO:0045843 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00690000101940
            GO:GO:0043403 GO:GO:0048627 CTD:6665 KO:K09271 OMA:PQSDPRL
            EMBL:DAAA02048793 IPI:IPI00703496 RefSeq:NP_001179004.1
            UniGene:Bt.15965 Ensembl:ENSBTAT00000007184 GeneID:505878
            KEGG:bta:505878 NextBio:20867356 Uniprot:E1B9L6
        Length = 233

 Score = 109 (43.4 bits), Expect = 5.3e-06, P = 5.3e-06
 Identities = 21/64 (32%), Positives = 38/64 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    R+Q  + +P   + + + K  G +WK + EDEK PFVE A++ ++ + ++
Sbjct:    54 NAFMVWSSAQRRQMAQQNPKMHN-SEISKRLGAQWKLLGEDEKRPFVEEAKRLRARHLRD 112

Query:   105 MQDY 108
               DY
Sbjct:   113 YPDY 116


>UNIPROTKB|E2R3H4 [details] [associations]
            symbol:SOX15 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0048627
            "myoblast development" evidence=IEA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0045843 "negative regulation of striated muscle
            tissue development" evidence=IEA] [GO:0043403 "skeletal muscle
            tissue regeneration" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
            "chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            GO:GO:0005737 GO:GO:0003677 GO:GO:0045944 GO:GO:0003682
            GO:GO:0045843 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00690000101940
            GO:GO:0043403 GO:GO:0048627 CTD:6665 KO:K09271 OMA:PQSDPRL
            EMBL:AAEX03003621 RefSeq:XP_003434661.1 ProteinModelPortal:E2R3H4
            Ensembl:ENSCAFT00000026387 GeneID:100688349 KEGG:cfa:100688349
            Uniprot:E2R3H4
        Length = 233

 Score = 109 (43.4 bits), Expect = 5.3e-06, P = 5.3e-06
 Identities = 21/64 (32%), Positives = 38/64 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    R+Q  + +P   + + + K  G +WK + EDEK PFVE A++ ++ + ++
Sbjct:    54 NAFMVWSSAQRRQMAQQNPKMHN-SEISKRLGAQWKLLGEDEKRPFVEEAKRLRARHLRD 112

Query:   105 MQDY 108
               DY
Sbjct:   113 YPDY 116


>UNIPROTKB|O60248 [details] [associations]
            symbol:SOX15 "Protein SOX-15" species:9606 "Homo sapiens"
            [GO:0003682 "chromatin binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0043403 "skeletal muscle tissue
            regeneration" evidence=IEA] [GO:0005634 "nucleus" evidence=NAS]
            [GO:0003677 "DNA binding" evidence=NAS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=NAS] [GO:0006325 "chromatin
            organization" evidence=NAS] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=NAS] [GO:0006357
            "regulation of transcription from RNA polymerase II promoter"
            evidence=TAS] [GO:0008584 "male gonad development" evidence=TAS]
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=ISS] [GO:0014718 "positive
            regulation of satellite cell activation involved in skeletal muscle
            regeneration" evidence=ISS] [GO:0045843 "negative regulation of
            striated muscle tissue development" evidence=ISS] [GO:0048627
            "myoblast development" evidence=ISS] [GO:2000288 "positive
            regulation of myoblast proliferation" evidence=ISS] [GO:0030154
            "cell differentiation" evidence=ISS] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0070318 "positive regulation of G0 to G1
            transition" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005737 EMBL:CH471108 GO:GO:0003677
            GO:GO:0045944 GO:GO:0003700 GO:GO:0003682 GO:GO:0008584
            GO:GO:0045843 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006325 GO:GO:0014718
            GO:GO:0070318 GO:GO:0043403 GO:GO:2000288 GO:GO:0048627
            CleanEx:HS_SOX12 HOGENOM:HOG000231647 CTD:6665 EMBL:AB006867
            EMBL:BC000985 EMBL:BC072003 EMBL:X73039 EMBL:AJ006222 EMBL:AB025355
            IPI:IPI00028451 PIR:S34119 RefSeq:NP_008873.1 UniGene:Hs.95582
            ProteinModelPortal:O60248 SMR:O60248 STRING:O60248
            PhosphoSite:O60248 PRIDE:O60248 DNASU:6665 Ensembl:ENST00000250055
            Ensembl:ENST00000538513 GeneID:6665 KEGG:hsa:6665 UCSC:uc002ghy.1
            GeneCards:GC17M007491 HGNC:HGNC:11196 MIM:601297 neXtProt:NX_O60248
            PharmGKB:PA36033 eggNOG:NOG311451 HOVERGEN:HBG055512
            InParanoid:O60248 KO:K09271 OMA:PQSDPRL OrthoDB:EOG40K80Q
            PhylomeDB:O60248 GenomeRNAi:6665 NextBio:25987 ArrayExpress:O60248
            Bgee:O60248 CleanEx:HS_SOX15 Genevestigator:O60248
            GermOnline:ENSG00000129194 Uniprot:O60248
        Length = 233

 Score = 109 (43.4 bits), Expect = 5.3e-06, P = 5.3e-06
 Identities = 21/64 (32%), Positives = 38/64 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    R+Q  + +P   + + + K  G +WK + EDEK PFVE A++ ++ + ++
Sbjct:    54 NAFMVWSSAQRRQMAQQNPKMHN-SEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRD 112

Query:   105 MQDY 108
               DY
Sbjct:   113 YPDY 116


>UNIPROTKB|F1ST29 [details] [associations]
            symbol:SOX15 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0048627 "myoblast development" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0045843 "negative
            regulation of striated muscle tissue development" evidence=IEA]
            [GO:0043403 "skeletal muscle tissue regeneration" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0000122 "negative
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            GO:GO:0005737 GO:GO:0003677 GO:GO:0045944 GO:GO:0003682
            GO:GO:0045843 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00690000101940
            GO:GO:0043403 GO:GO:0048627 KO:K09271 OMA:PQSDPRL EMBL:CU914279
            RefSeq:XP_003131994.1 UniGene:Ssc.61757 Ensembl:ENSSSCT00000019538
            GeneID:100522397 KEGG:ssc:100522397 Uniprot:F1ST29
        Length = 233

 Score = 109 (43.4 bits), Expect = 5.3e-06, P = 5.3e-06
 Identities = 21/64 (32%), Positives = 38/64 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    R+Q  + +P   + + + K  G +WK + EDEK PFVE A++ ++ + ++
Sbjct:    54 NAFMVWSSAQRRQMAQQNPKMHN-SEISKRLGAQWKLLGEDEKRPFVEEAKRLRARHLRD 112

Query:   105 MQDY 108
               DY
Sbjct:   113 YPDY 116


>MGI|MGI:98359 [details] [associations]
            symbol:Sox11 "SRY-box containing gene 11" species:10090 "Mus
            musculus" [GO:0000122 "negative regulation of transcription from
            RNA polymerase II promoter" evidence=ISO;IDA] [GO:0000976
            "transcription regulatory region sequence-specific DNA binding"
            evidence=ISO;IDA] [GO:0000979 "RNA polymerase II core promoter
            sequence-specific DNA binding" evidence=ISO] [GO:0001071 "nucleic
            acid binding transcription factor activity" evidence=IDA]
            [GO:0001077 "RNA polymerase II core promoter proximal region
            sequence-specific DNA binding transcription factor activity
            involved in positive regulation of transcription" evidence=ISO;IDA]
            [GO:0001105 "RNA polymerase II transcription coactivator activity"
            evidence=ISO;IDA] [GO:0001158 "enhancer sequence-specific DNA
            binding" evidence=ISO;IDA] [GO:0001501 "skeletal system
            development" evidence=IMP] [GO:0001841 "neural tube formation"
            evidence=IMP] [GO:0002089 "lens morphogenesis in camera-type eye"
            evidence=IMP] [GO:0003151 "outflow tract morphogenesis"
            evidence=IMP] [GO:0003211 "cardiac ventricle formation"
            evidence=IMP] [GO:0003357 "noradrenergic neuron differentiation"
            evidence=ISO;IMP] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISO] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006412
            "translation" evidence=ISO] [GO:0007275 "multicellular organismal
            development" evidence=IEA] [GO:0007399 "nervous system development"
            evidence=IEA] [GO:0008135 "translation factor activity, nucleic
            acid binding" evidence=ISO] [GO:0008284 "positive regulation of
            cell proliferation" evidence=IMP] [GO:0010628 "positive regulation
            of gene expression" evidence=ISO;IMP] [GO:0010629 "negative
            regulation of gene expression" evidence=ISO;IMP] [GO:0014009 "glial
            cell proliferation" evidence=IMP] [GO:0014032 "neural crest cell
            development" evidence=IMP] [GO:0021510 "spinal cord development"
            evidence=IMP] [GO:0021782 "glial cell development" evidence=IMP]
            [GO:0030154 "cell differentiation" evidence=IEA] [GO:0030513
            "positive regulation of BMP signaling pathway" evidence=IMP]
            [GO:0035332 "positive regulation of hippo signaling cascade"
            evidence=IMP] [GO:0035914 "skeletal muscle cell differentiation"
            evidence=IMP] [GO:0045666 "positive regulation of neuron
            differentiation" evidence=ISO;IDA;IMP] [GO:0045669 "positive
            regulation of osteoblast differentiation" evidence=ISO] [GO:0045778
            "positive regulation of ossification" evidence=ISO;IMP] [GO:0045893
            "positive regulation of transcription, DNA-dependent"
            evidence=IDA;IMP] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISO;IDA] [GO:0046887
            "positive regulation of hormone secretion" evidence=IMP]
            [GO:0048485 "sympathetic nervous system development" evidence=IMP]
            [GO:0048557 "embryonic digestive tract morphogenesis" evidence=IMP]
            [GO:0048704 "embryonic skeletal system morphogenesis" evidence=IMP]
            [GO:0050672 "negative regulation of lymphocyte proliferation"
            evidence=ISO] [GO:0050769 "positive regulation of neurogenesis"
            evidence=IDA] [GO:0060022 "hard palate development" evidence=IMP]
            [GO:0060023 "soft palate development" evidence=IMP] [GO:0060174
            "limb bud formation" evidence=IMP] [GO:0060253 "negative regulation
            of glial cell proliferation" evidence=ISO;IMP] [GO:0060412
            "ventricular septum morphogenesis" evidence=IMP] [GO:0060425 "lung
            morphogenesis" evidence=IMP] [GO:0060548 "negative regulation of
            cell death" evidence=IMP] [GO:0060563 "neuroepithelial cell
            differentiation" evidence=IMP] [GO:0061029 "eyelid development in
            camera-type eye" evidence=IMP] [GO:0061053 "somite development"
            evidence=IMP] [GO:0061303 "cornea development in camera-type eye"
            evidence=IMP] [GO:0061386 "closure of optic fissure" evidence=IMP]
            [GO:2000648 "positive regulation of stem cell proliferation"
            evidence=ISO] [GO:2000678 "negative regulation of transcription
            regulatory region DNA binding" evidence=ISO] [GO:2001111 "positive
            regulation of lens epithelial cell proliferation" evidence=IMP]
            InterPro:IPR009071 MGI:MGI:98359 Pfam:PF00505 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008135 GO:GO:0003705 GO:GO:0001077
            GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0014009 GO:GO:0001822 GO:GO:0050769
            GO:GO:0030513 GO:GO:0045669 GO:GO:0045666 GO:GO:0060548
            GO:GO:0021510 GO:GO:0014032 GO:GO:0048704 GO:GO:0001105
            GO:GO:0035914 GO:GO:0000979 GO:GO:0061303 GO:GO:0061029
            GO:GO:0003151 GO:GO:0048485 GO:GO:0001158 GO:GO:0014003
            GO:GO:0060563 GO:GO:0045778 GO:GO:0001841 GO:GO:0017015
            GO:GO:0002089 GO:GO:0060412 GO:GO:0046887 GO:GO:0060174
            GO:GO:0060023 GO:GO:0060022 GO:GO:2000648 GO:GO:0060253
            GO:GO:0048557 GO:GO:0060425 GO:GO:0061386 GO:GO:0050672
            GO:GO:2000678 GO:GO:0021782 GO:GO:0003357 GO:GO:0061053
            GO:GO:0003211 CTD:6664 HOVERGEN:HBG005040 KO:K09268
            InterPro:IPR017386 PIRSF:PIRSF038098 eggNOG:NOG130659
            HOGENOM:HOG000231874 OMA:TEEGEFM OrthoDB:EOG4QVCCX ChiTaRS:SOX11
            GO:GO:0035332 GO:GO:2001111 GO:GO:0072404 EMBL:AF009414
            EMBL:AB108675 EMBL:BK001484 EMBL:AK165693 EMBL:AK146514
            EMBL:BC062095 EMBL:Z18960 IPI:IPI00556698 RefSeq:NP_033260.4
            UniGene:Mm.41702 UniGene:Mm.466344 ProteinModelPortal:Q7M6Y2
            SMR:Q7M6Y2 STRING:Q7M6Y2 PhosphoSite:Q7M6Y2 PRIDE:Q7M6Y2
            Ensembl:ENSMUST00000079063 GeneID:20666 KEGG:mmu:20666
            UCSC:uc007nfn.2 GeneTree:ENSGT00690000101789 InParanoid:Q7M6Y2
            NextBio:299129 Bgee:Q7M6Y2 CleanEx:MM_SOX11 Genevestigator:Q7M6Y2
            GermOnline:ENSMUSG00000063632 Uniprot:Q7M6Y2
        Length = 395

 Score = 98 (39.6 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  E  P+  + A + K  G++WK + + EK PF+  AE+ +    K+
Sbjct:    54 NAFMVWSKIERRKIMEQSPDMHN-AEISKRLGKRWKMLKDSEKIPFIREAERLRL---KH 109

Query:   105 MQDY 108
             M DY
Sbjct:   110 MADY 113

 Score = 35 (17.4 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query:   120 EENESD-KSKSEVNDEDDE 137
             E++E   + K + +D+DDE
Sbjct:   196 EDDELQLRPKPDADDDDDE 214

 Score = 33 (16.7 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query:   133 DEDDEEGSGEVFLQL 147
             D+DDE+   +  LQL
Sbjct:   188 DDDDEDDDEDDELQL 202


>UNIPROTKB|Q8WW32 [details] [associations]
            symbol:HMGB4 "High mobility group protein B4" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
            InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0005694 GO:GO:0003677 EMBL:CH471059 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
            EMBL:AL121980 HOGENOM:HOG000197861 HOVERGEN:HBG009000 CTD:127540
            KO:K11297 OMA:RYQEEMM EMBL:DQ207367 EMBL:AK311985 EMBL:BC021180
            IPI:IPI00815726 RefSeq:NP_660206.2 UniGene:Hs.568628
            UniGene:Hs.667683 HSSP:P17741 ProteinModelPortal:Q8WW32 SMR:Q8WW32
            PhosphoSite:Q8WW32 DMDM:74730920 PRIDE:Q8WW32 DNASU:127540
            Ensembl:ENST00000519684 Ensembl:ENST00000522796 GeneID:127540
            KEGG:hsa:127540 GeneCards:GC01P034326 HGNC:HGNC:24954 HPA:HPA035699
            neXtProt:NX_Q8WW32 InParanoid:Q8WW32 PhylomeDB:Q8WW32 NextBio:82109
            Bgee:Q8WW32 CleanEx:HS_HMGB4 Genevestigator:Q8WW32 Uniprot:Q8WW32
        Length = 186

 Score = 106 (42.4 bits), Expect = 5.4e-06, P = 5.4e-06
 Identities = 22/67 (32%), Positives = 38/67 (56%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             S+F +F ++   Q K  +PN  SV  V KA G+ W + ++ EK P+ +R    ++ Y + 
Sbjct:    98 SSFLLFCQDHYAQLKRENPN-WSVVQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEE 156

Query:   105 MQDYNKQ 111
             ++ Y KQ
Sbjct:   157 LELYRKQ 163

 Score = 101 (40.6 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F+  +R +FKE  PN         +   EKW+S+S+ EKA +   A+  K+ Y +
Sbjct:    14 SSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDKARYQE 73

Query:   104 NMQDY 108
              M +Y
Sbjct:    74 EMMNY 78


>RGD|2319002 [details] [associations]
            symbol:LOC100365478 "high-mobility group box 1-like"
            species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            RGD:2319002 GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
            IPI:IPI00958625 Ensembl:ENSRNOT00000062071 Uniprot:F1LWU2
        Length = 186

 Score = 106 (42.4 bits), Expect = 5.4e-06, P = 5.4e-06
 Identities = 28/88 (31%), Positives = 42/88 (47%)

Query:    48 FVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQD 107
             F+F  + R + K  HP   S+  V K  GE W S   D+K P  ++A K K  Y K++  
Sbjct:   101 FLFCSDHRPKIKGKHPG-LSIGDVAKNLGEMWNSTVMDDKQPSEKKATKLKETYEKDIAA 159

Query:   108 YN-KQLADGVNAAEENESDKSKSEVNDE 134
             Y  K   D V      +++KS+ +   E
Sbjct:   160 YRAKGKPDAVKKGVV-KAEKSQKKRRQE 186


>UNIPROTKB|Q5T7C6 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 HOGENOM:HOG000197861 HOVERGEN:HBG009000 EMBL:AL353648
            UniGene:Hs.434102 UniGene:Hs.593339 UniGene:Hs.596078
            UniGene:Hs.741195 HGNC:HGNC:4983 ChiTaRS:HMGB1 EMBL:AL138681
            IPI:IPI00645948 SMR:Q5T7C6 MINT:MINT-1373108
            Ensembl:ENST00000426225 Uniprot:Q5T7C6
        Length = 162

 Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A+  K+ Y +
Sbjct:    14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 73

Query:   104 NMQDY 108
              M+ Y
Sbjct:    74 EMKTY 78

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 19/46 (41%), Positives = 27/46 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPF 90
             SAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+
Sbjct:   100 SAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPY 144


>UNIPROTKB|Q5T7C0 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0001654
            "eye development" evidence=IEA] [GO:0005125 "cytokine activity"
            evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0010858 "calcium-dependent protein kinase
            regulator activity" evidence=IEA] [GO:0030295 "protein kinase
            activator activity" evidence=IEA] [GO:0030324 "lung development"
            evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
            [GO:0045639 "positive regulation of myeloid cell differentiation"
            evidence=IEA] [GO:0045819 "positive regulation of glycogen
            catabolic process" evidence=IEA] [GO:0045944 "positive regulation
            of transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
            [GO:2000426 "negative regulation of apoptotic cell clearance"
            evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
            GO:GO:0005634 GO:GO:0005737 GO:GO:0005615 GO:GO:0003677
            GO:GO:0030324 GO:GO:0045944 GO:GO:0051384 GO:GO:0043005
            GO:GO:0045860 GO:GO:0030295 eggNOG:COG5648 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0045819
            GO:GO:0001654 Pfam:PF09011 GO:GO:0045639 EMBL:AL353648
            UniGene:Hs.434102 UniGene:Hs.593339 UniGene:Hs.596078
            UniGene:Hs.741195 HGNC:HGNC:4983 ChiTaRS:HMGB1 GO:GO:0010858
            GO:GO:2000426 EMBL:AL138681 IPI:IPI00643746 SMR:Q5T7C0
            Ensembl:ENST00000398908 Uniprot:Q5T7C0
        Length = 97

 Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A+  K+ Y +
Sbjct:    14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 73

Query:   104 NMQDY 108
              M+ Y
Sbjct:    74 EMKTY 78


>UNIPROTKB|D4A2L7 [details] [associations]
            symbol:D4A2L7 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 IPI:IPI00948102
            Ensembl:ENSRNOT00000030194 ArrayExpress:D4A2L7 Uniprot:D4A2L7
        Length = 135

 Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A+  K+ Y +
Sbjct:    14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 73

Query:   104 NMQDY 108
              M+ Y
Sbjct:    74 EMKTY 78


>UNIPROTKB|F1PHT3 [details] [associations]
            symbol:SOX10 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0090090 "negative regulation of canonical Wnt
            receptor signaling pathway" evidence=IEA] [GO:0048709
            "oligodendrocyte differentiation" evidence=IEA] [GO:0048589
            "developmental growth" evidence=IEA] [GO:0048546 "digestive tract
            morphogenesis" evidence=IEA] [GO:0048484 "enteric nervous system
            development" evidence=IEA] [GO:0048469 "cell maturation"
            evidence=IEA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0043066
            "negative regulation of apoptotic process" evidence=IEA]
            [GO:0042802 "identical protein binding" evidence=IEA] [GO:0031315
            "extrinsic to mitochondrial outer membrane" evidence=IEA]
            [GO:0030318 "melanocyte differentiation" evidence=IEA] [GO:0014015
            "positive regulation of gliogenesis" evidence=IEA] [GO:0007422
            "peripheral nervous system development" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0003682 "chromatin binding"
            evidence=IEA] [GO:0002052 "positive regulation of neuroblast
            proliferation" evidence=IEA] [GO:0001755 "neural crest cell
            migration" evidence=IEA] [GO:0001701 "in utero embryonic
            development" evidence=IEA] [GO:0000980 "RNA polymerase II distal
            enhancer sequence-specific DNA binding" evidence=IEA] [GO:0000978
            "RNA polymerase II core promoter proximal region sequence-specific
            DNA binding" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0043066 GO:GO:0001755 GO:GO:0001701
            GO:GO:0045944 GO:GO:0007422 GO:GO:0003682 GO:GO:0003705
            GO:GO:0000980 GO:GO:0000978 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0048589 GO:GO:0090090
            GO:GO:0030318 GO:GO:0048709 GO:GO:0031315 GO:GO:0048484
            GO:GO:0002052 GO:GO:0048546 GO:GO:0048469 GO:GO:0014015 CTD:6663
            GeneTree:ENSGT00670000097649 KO:K09270 InterPro:IPR022151
            Pfam:PF12444 OMA:YYGHSSQ EMBL:AAEX03007323 RefSeq:XP_538379.3
            Ensembl:ENSCAFT00000002231 GeneID:481258 KEGG:cfa:481258
            Uniprot:F1PHT3
        Length = 468

 Score = 113 (44.8 bits), Expect = 7.4e-06, P = 7.4e-06
 Identities = 24/82 (29%), Positives = 46/82 (56%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ ++E +K PF+E AE+ +  + K+
Sbjct:   111 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKD 169

Query:   105 MQDYNKQLADGVNA-AEENESD 125
               DY  Q     N  A + ES+
Sbjct:   170 HPDYKYQPRRRKNGKAAQGESE 191


>UNIPROTKB|F1N6W0 [details] [associations]
            symbol:SOX10 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0090090 "negative regulation of canonical Wnt receptor
            signaling pathway" evidence=IEA] [GO:0048709 "oligodendrocyte
            differentiation" evidence=IEA] [GO:0048589 "developmental growth"
            evidence=IEA] [GO:0048546 "digestive tract morphogenesis"
            evidence=IEA] [GO:0048484 "enteric nervous system development"
            evidence=IEA] [GO:0048469 "cell maturation" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0043066 "negative
            regulation of apoptotic process" evidence=IEA] [GO:0042802
            "identical protein binding" evidence=IEA] [GO:0031315 "extrinsic to
            mitochondrial outer membrane" evidence=IEA] [GO:0030318 "melanocyte
            differentiation" evidence=IEA] [GO:0014015 "positive regulation of
            gliogenesis" evidence=IEA] [GO:0007422 "peripheral nervous system
            development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003705 "RNA polymerase II distal enhancer sequence-specific
            DNA binding transcription factor activity" evidence=IEA]
            [GO:0003682 "chromatin binding" evidence=IEA] [GO:0002052 "positive
            regulation of neuroblast proliferation" evidence=IEA] [GO:0001755
            "neural crest cell migration" evidence=IEA] [GO:0001701 "in utero
            embryonic development" evidence=IEA] [GO:0000980 "RNA polymerase II
            distal enhancer sequence-specific DNA binding" evidence=IEA]
            [GO:0000978 "RNA polymerase II core promoter proximal region
            sequence-specific DNA binding" evidence=IEA] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005634 GO:GO:0043066 GO:GO:0001755
            GO:GO:0001701 GO:GO:0045944 GO:GO:0007422 GO:GO:0003682
            GO:GO:0003705 GO:GO:0000980 GO:GO:0000978 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0048589
            GO:GO:0090090 GO:GO:0030318 GO:GO:0048709 GO:GO:0031315
            GO:GO:0048484 GO:GO:0002052 GO:GO:0048546 GO:GO:0048469
            GO:GO:0014015 CTD:6663 GeneTree:ENSGT00670000097649 KO:K09270
            InterPro:IPR022151 Pfam:PF12444 OMA:YYGHSSQ EMBL:DAAA02014653
            EMBL:DAAA02014645 EMBL:DAAA02014646 EMBL:DAAA02014647
            EMBL:DAAA02014648 EMBL:DAAA02014649 EMBL:DAAA02014650
            EMBL:DAAA02014651 EMBL:DAAA02014652 IPI:IPI00718217
            RefSeq:NP_001180176.1 UniGene:Bt.22876 Ensembl:ENSBTAT00000034677
            GeneID:353115 KEGG:bta:353115 NextBio:20812699 Uniprot:F1N6W0
        Length = 469

 Score = 113 (44.8 bits), Expect = 7.4e-06, P = 7.4e-06
 Identities = 24/82 (29%), Positives = 46/82 (56%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ ++E +K PF+E AE+ +  + K+
Sbjct:   112 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKD 170

Query:   105 MQDYNKQLADGVNA-AEENESD 125
               DY  Q     N  A + ES+
Sbjct:   171 HPDYKYQPRRRKNGKAAQGESE 192


>UNIPROTKB|A5A763 [details] [associations]
            symbol:SOX10 "Transcription factor SOX-10" species:9823
            "Sus scrofa" [GO:0005634 "nucleus" evidence=ISS] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
            GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 CTD:6663 eggNOG:NOG295709 HOGENOM:HOG000108876
            HOVERGEN:HBG002061 KO:K09270 OrthoDB:EOG41C6WH InterPro:IPR022151
            Pfam:PF12444 EMBL:AB271933 RefSeq:NP_001093403.1 UniGene:Ssc.27602
            ProteinModelPortal:A5A763 SMR:A5A763 STRING:A5A763 GeneID:414903
            KEGG:ssc:414903 Uniprot:A5A763
        Length = 469

 Score = 113 (44.8 bits), Expect = 7.4e-06, P = 7.4e-06
 Identities = 24/82 (29%), Positives = 46/82 (56%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ ++E +K PF+E AE+ +  + K+
Sbjct:   112 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKD 170

Query:   105 MQDYNKQLADGVNA-AEENESD 125
               DY  Q     N  A + ES+
Sbjct:   171 HPDYKYQPRRRKNGKAAQGESE 192


>MGI|MGI:98371 [details] [associations]
            symbol:Sox9 "SRY-box containing gene 9" species:10090 "Mus
            musculus" [GO:0000976 "transcription regulatory region
            sequence-specific DNA binding" evidence=IDA] [GO:0001046 "core
            promoter sequence-specific DNA binding" evidence=ISO] [GO:0001077
            "RNA polymerase II core promoter proximal region sequence-specific
            DNA binding transcription factor activity involved in positive
            regulation of transcription" evidence=ISO;IDA] [GO:0001158
            "enhancer sequence-specific DNA binding" evidence=IDA] [GO:0001501
            "skeletal system development" evidence=ISO] [GO:0001502 "cartilage
            condensation" evidence=IMP] [GO:0001708 "cell fate specification"
            evidence=IMP] [GO:0001837 "epithelial to mesenchymal transition"
            evidence=IMP] [GO:0001894 "tissue homeostasis" evidence=IMP]
            [GO:0001934 "positive regulation of protein phosphorylation"
            evidence=IMP;IDA] [GO:0001942 "hair follicle development"
            evidence=IMP] [GO:0002053 "positive regulation of mesenchymal cell
            proliferation" evidence=IMP] [GO:0002063 "chondrocyte development"
            evidence=IMP] [GO:0002683 "negative regulation of immune system
            process" evidence=IMP] [GO:0003170 "heart valve development"
            evidence=IMP] [GO:0003179 "heart valve morphogenesis" evidence=IMP]
            [GO:0003188 "heart valve formation" evidence=IMP] [GO:0003203
            "endocardial cushion morphogenesis" evidence=IMP] [GO:0003413
            "chondrocyte differentiation involved in endochondral bone
            morphogenesis" evidence=ISO] [GO:0003415 "chondrocyte hypertrophy"
            evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003682
            "chromatin binding" evidence=ISO] [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=ISO;IMP;IDA]
            [GO:0003705 "RNA polymerase II distal enhancer sequence-specific
            DNA binding transcription factor activity" evidence=ISO;IDA]
            [GO:0004672 "protein kinase activity" evidence=IMP] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=ISO;IDA] [GO:0005667 "transcription factor complex"
            evidence=IPI] [GO:0006334 "nucleosome assembly" evidence=ISO]
            [GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=TAS]
            [GO:0006357 "regulation of transcription from RNA polymerase II
            promoter" evidence=IDA] [GO:0006461 "protein complex assembly"
            evidence=ISO] [GO:0007165 "signal transduction" evidence=IMP]
            [GO:0007173 "epidermal growth factor receptor signaling pathway"
            evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IGI]
            [GO:0007507 "heart development" evidence=IMP] [GO:0008013
            "beta-catenin binding" evidence=IPI] [GO:0008284 "positive
            regulation of cell proliferation" evidence=ISO;IMP] [GO:0008285
            "negative regulation of cell proliferation" evidence=IMP]
            [GO:0008584 "male gonad development" evidence=ISO;IGI;IMP]
            [GO:0010564 "regulation of cell cycle process" evidence=ISO]
            [GO:0010628 "positive regulation of gene expression" evidence=IGI]
            [GO:0010634 "positive regulation of epithelial cell migration"
            evidence=ISO;ISS] [GO:0014032 "neural crest cell development"
            evidence=IMP] [GO:0014068 "positive regulation of
            phosphatidylinositol 3-kinase cascade" evidence=IMP] [GO:0019100
            "male germ-line sex determination" evidence=IMP] [GO:0019933
            "cAMP-mediated signaling" evidence=ISO] [GO:0030154 "cell
            differentiation" evidence=IMP] [GO:0030155 "regulation of cell
            adhesion" evidence=IMP] [GO:0030198 "extracellular matrix
            organization" evidence=IMP] [GO:0030238 "male sex determination"
            evidence=IGI] [GO:0030279 "negative regulation of ossification"
            evidence=IMP] [GO:0030502 "negative regulation of bone
            mineralization" evidence=IMP] [GO:0030858 "positive regulation of
            epithelial cell differentiation" evidence=IMP] [GO:0030916 "otic
            vesicle formation" evidence=IMP] [GO:0031018 "endocrine pancreas
            development" evidence=IMP] [GO:0032331 "negative regulation of
            chondrocyte differentiation" evidence=IMP] [GO:0032332 "positive
            regulation of chondrocyte differentiation" evidence=ISO;IDA;IMP]
            [GO:0034236 "protein kinase A catalytic subunit binding"
            evidence=ISO] [GO:0035019 "somatic stem cell maintenance"
            evidence=IMP] [GO:0035326 "enhancer binding" evidence=ISO;IDA]
            [GO:0035622 "intrahepatic bile duct development" evidence=IMP]
            [GO:0042127 "regulation of cell proliferation" evidence=IMP]
            [GO:0042981 "regulation of apoptotic process" evidence=IMP]
            [GO:0043066 "negative regulation of apoptotic process"
            evidence=ISO;IMP] [GO:0043234 "protein complex" evidence=ISO]
            [GO:0043491 "protein kinase B signaling cascade" evidence=IMP]
            [GO:0043565 "sequence-specific DNA binding" evidence=IDA]
            [GO:0044212 "transcription regulatory region DNA binding"
            evidence=IDA] [GO:0045165 "cell fate commitment" evidence=IGI]
            [GO:0045595 "regulation of cell differentiation" evidence=IMP]
            [GO:0045662 "negative regulation of myoblast differentiation"
            evidence=IDA] [GO:0045732 "positive regulation of protein catabolic
            process" evidence=IDA] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=ISO;IMP;IDA] [GO:0045893
            "positive regulation of transcription, DNA-dependent"
            evidence=ISO;IMP;IDA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter"
            evidence=ISO;IGI;IMP;IDA] [GO:0046533 "negative regulation of
            photoreceptor cell differentiation" evidence=IGI] [GO:0048709
            "oligodendrocyte differentiation" evidence=IMP] [GO:0050679
            "positive regulation of epithelial cell proliferation"
            evidence=IMP] [GO:0050680 "negative regulation of epithelial cell
            proliferation" evidence=IMP] [GO:0051216 "cartilage development"
            evidence=IMP] [GO:0060008 "Sertoli cell differentiation"
            evidence=IMP] [GO:0060009 "Sertoli cell development" evidence=IGI]
            [GO:0060018 "astrocyte fate commitment" evidence=IGI] [GO:0060041
            "retina development in camera-type eye" evidence=IGI] [GO:0060221
            "retinal rod cell differentiation" evidence=IGI] [GO:0060350
            "endochondral bone morphogenesis" evidence=IMP] [GO:0060512
            "prostate gland morphogenesis" evidence=IMP] [GO:0060517
            "epithelial cell proliferation involved in prostatic bud
            elongation" evidence=IMP] [GO:0060729 "intestinal epithelial
            structure maintenance" evidence=IMP] [GO:0060784 "regulation of
            cell proliferation involved in tissue homeostasis" evidence=IMP]
            [GO:0061036 "positive regulation of cartilage development"
            evidence=ISO;IDA] [GO:0061138 "morphogenesis of a branching
            epithelium" evidence=IGI] [GO:0070168 "negative regulation of
            biomineral tissue development" evidence=IMP] [GO:0070371 "ERK1 and
            ERK2 cascade" evidence=IDA] [GO:0071260 "cellular response to
            mechanical stimulus" evidence=IDA] [GO:0071300 "cellular response
            to retinoic acid" evidence=IDA] [GO:0071364 "cellular response to
            epidermal growth factor stimulus" evidence=IDA] [GO:0071504
            "cellular response to heparin" evidence=IDA] [GO:0071560 "cellular
            response to transforming growth factor beta stimulus" evidence=ISO]
            [GO:0072034 "renal vesicle induction" evidence=IMP] [GO:0072197
            "ureter morphogenesis" evidence=IGI] [GO:0072289 "metanephric
            nephron tubule formation" evidence=IGI] [GO:0090090 "negative
            regulation of canonical Wnt receptor signaling pathway"
            evidence=IDA] [GO:0090103 "cochlea morphogenesis" evidence=IMP]
            [GO:0090184 "positive regulation of kidney development"
            evidence=IGI] [GO:0090190 "positive regulation of branching
            involved in ureteric bud morphogenesis" evidence=IMP] [GO:2000020
            "positive regulation of male gonad development" evidence=ISO]
            [GO:2000138 "positive regulation of cell proliferation involved in
            heart morphogenesis" evidence=IMP] [GO:2000741 "positive regulation
            of mesenchymal stem cell differentiation" evidence=ISO]
            InterPro:IPR009071 MGI:MGI:98371 Pfam:PF00505 GO:GO:0001708
            GO:GO:0007173 GO:GO:0045892 GO:GO:0043066 GO:GO:0006461
            GO:GO:0030155 GO:GO:0071560 GO:GO:0019933 GO:GO:0070371
            GO:GO:0071300 GO:GO:0030198 GO:GO:0014068 GO:GO:0007283
            GO:GO:0003682 GO:GO:0005667 GO:GO:0003705 GO:GO:0001077
            GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0004672 GO:GO:0071504 GO:GO:0001942
            GO:GO:0032332 GO:GO:0060009 GO:GO:0090090 GO:GO:0071260
            GO:GO:0035019 GO:GO:0001934 GO:GO:0090190 GO:GO:0071364
            GO:GO:0031018 GO:GO:0043491 GO:GO:0014032 GO:GO:0001502
            GO:GO:0045732 GO:GO:0001837 GO:GO:0050680 GO:GO:0001503
            GO:GO:0001658 GO:GO:0071347 GO:GO:0001158 GO:GO:0030858
            GO:GO:0048709 GO:GO:0010634 GO:GO:0016585 GO:GO:0006334
            GO:GO:0003413 GO:GO:0030879 GO:GO:0050679 GO:GO:0002053
            GO:GO:0001046 GO:GO:0030502 GO:GO:2000138 GO:GO:0061036
            GO:GO:0003203 GO:GO:0032331 GO:GO:0045662 GO:GO:0030916
            GO:GO:2000020 GO:GO:0046533 GO:GO:0060174 GO:GO:0030903
            GO:GO:0090103 GO:GO:0010564 GO:GO:0019100 GO:GO:0060018
            GO:GO:0035622 GO:GO:0072190 GO:GO:0072289 GO:GO:0072197
            GO:GO:0003188 eggNOG:NOG295709 GeneTree:ENSGT00670000097649
            HOVERGEN:HBG002061 KO:K09270 InterPro:IPR022151 Pfam:PF12444
            GO:GO:2000741 GO:GO:0072034 GO:GO:0060221 OrthoDB:EOG4TXBRZ
            GO:GO:0003415 GO:GO:0060517 GO:GO:0060729 GO:GO:0002683
            GO:GO:0060784 CTD:6662 OMA:GAGHVWM EMBL:AF421878 EMBL:AK030187
            EMBL:AK049986 EMBL:BC004064 EMBL:BC023796 EMBL:BC023808
            EMBL:BC023953 EMBL:BC024958 EMBL:BC034264 EMBL:Z18958
            IPI:IPI00131219 PIR:S30243 PIR:S52469 RefSeq:NP_035578.3
            UniGene:Mm.286407 ProteinModelPortal:Q04887 SMR:Q04887
            IntAct:Q04887 STRING:Q04887 PhosphoSite:Q04887 PRIDE:Q04887
            Ensembl:ENSMUST00000000579 GeneID:20682 KEGG:mmu:20682
            InParanoid:Q04887 NextBio:299193 Bgee:Q04887 CleanEx:MM_SOX9
            Genevestigator:Q04887 GermOnline:ENSMUSG00000000567 Uniprot:Q04887
        Length = 507

 Score = 113 (44.8 bits), Expect = 8.3e-06, P = 8.3e-06
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ ++E EK PFVE AE+ +  + K+
Sbjct:   110 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKD 168

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   169 HPDYKYQ 175


>UNIPROTKB|P48436 [details] [associations]
            symbol:SOX9 "Transcription factor SOX-9" species:9606 "Homo
            sapiens" [GO:0001503 "ossification" evidence=IEA] [GO:0001658
            "branching involved in ureteric bud morphogenesis" evidence=IEA]
            [GO:0003188 "heart valve formation" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0008013
            "beta-catenin binding" evidence=IEA] [GO:0014032 "neural crest cell
            development" evidence=IEA] [GO:0030155 "regulation of cell
            adhesion" evidence=IEA] [GO:0030198 "extracellular matrix
            organization" evidence=IEA] [GO:0030502 "negative regulation of
            bone mineralization" evidence=IEA] [GO:0030879 "mammary gland
            development" evidence=IEA] [GO:0030903 "notochord development"
            evidence=IEA] [GO:0031018 "endocrine pancreas development"
            evidence=IEA] [GO:0035622 "intrahepatic bile duct development"
            evidence=IEA] [GO:0043425 "bHLH transcription factor binding"
            evidence=IEA] [GO:0043491 "protein kinase B signaling cascade"
            evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
            process" evidence=IEA] [GO:0048709 "oligodendrocyte
            differentiation" evidence=IEA] [GO:0060009 "Sertoli cell
            development" evidence=IEA] [GO:0060018 "astrocyte fate commitment"
            evidence=IEA] [GO:0060174 "limb bud formation" evidence=IEA]
            [GO:0072190 "ureter urothelium development" evidence=IEA]
            [GO:0072197 "ureter morphogenesis" evidence=IEA] [GO:2000138
            "positive regulation of cell proliferation involved in heart
            morphogenesis" evidence=IEA] [GO:0008584 "male gonad development"
            evidence=IEP;IMP] [GO:0001708 "cell fate specification"
            evidence=ISS] [GO:0001837 "epithelial to mesenchymal transition"
            evidence=ISS] [GO:0001942 "hair follicle development" evidence=ISS]
            [GO:0002053 "positive regulation of mesenchymal cell proliferation"
            evidence=ISS] [GO:0003203 "endocardial cushion morphogenesis"
            evidence=ISS] [GO:0007283 "spermatogenesis" evidence=ISS]
            [GO:0019100 "male germ-line sex determination" evidence=ISS]
            [GO:0030858 "positive regulation of epithelial cell
            differentiation" evidence=ISS] [GO:0032331 "negative regulation of
            chondrocyte differentiation" evidence=ISS] [GO:0035019 "somatic
            stem cell maintenance" evidence=ISS] [GO:0042127 "regulation of
            cell proliferation" evidence=ISS] [GO:0042981 "regulation of
            apoptotic process" evidence=ISS] [GO:0045662 "negative regulation
            of myoblast differentiation" evidence=ISS] [GO:0046533 "negative
            regulation of photoreceptor cell differentiation" evidence=ISS]
            [GO:0050679 "positive regulation of epithelial cell proliferation"
            evidence=IEP;ISS] [GO:0050680 "negative regulation of epithelial
            cell proliferation" evidence=ISS] [GO:0060008 "Sertoli cell
            differentiation" evidence=ISS] [GO:0060041 "retina development in
            camera-type eye" evidence=ISS] [GO:0060221 "retinal rod cell
            differentiation" evidence=ISS] [GO:0060517 "epithelial cell
            proliferation involved in prostatic bud elongation" evidence=ISS]
            [GO:0060784 "regulation of cell proliferation involved in tissue
            homeostasis" evidence=ISS] [GO:0061138 "morphogenesis of a
            branching epithelium" evidence=ISS] [GO:0072289 "metanephric
            nephron tubule formation" evidence=ISS] [GO:0090090 "negative
            regulation of canonical Wnt receptor signaling pathway"
            evidence=ISS] [GO:0001158 "enhancer sequence-specific DNA binding"
            evidence=ISS] [GO:0001894 "tissue homeostasis" evidence=ISS]
            [GO:0002683 "negative regulation of immune system process"
            evidence=ISS] [GO:0003170 "heart valve development" evidence=ISS]
            [GO:0030279 "negative regulation of ossification" evidence=ISS]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0034236 "protein kinase A
            catalytic subunit binding" evidence=IPI] [GO:0071347 "cellular
            response to interleukin-1" evidence=IEP] [GO:0030850 "prostate
            gland development" evidence=IEP] [GO:0001934 "positive regulation
            of protein phosphorylation" evidence=ISS] [GO:0007173 "epidermal
            growth factor receptor signaling pathway" evidence=ISS] [GO:0070371
            "ERK1 and ERK2 cascade" evidence=ISS] [GO:0071260 "cellular
            response to mechanical stimulus" evidence=ISS] [GO:0071364
            "cellular response to epidermal growth factor stimulus"
            evidence=ISS] [GO:0071504 "cellular response to heparin"
            evidence=ISS] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IDA] [GO:0001077 "RNA polymerase II core promoter proximal
            region sequence-specific DNA binding transcription factor activity
            involved in positive regulation of transcription" evidence=IDA]
            [GO:0006338 "chromatin remodeling" evidence=IDA] [GO:0003682
            "chromatin binding" evidence=IDA] [GO:0006334 "nucleosome assembly"
            evidence=IDA] [GO:2000741 "positive regulation of mesenchymal stem
            cell differentiation" evidence=IDA] [GO:0032332 "positive
            regulation of chondrocyte differentiation" evidence=IMP;IDA]
            [GO:0071560 "cellular response to transforming growth factor beta
            stimulus" evidence=IDA] [GO:0061036 "positive regulation of
            cartilage development" evidence=IDA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0043234 "protein complex" evidence=IDA] [GO:0006461 "protein
            complex assembly" evidence=IDA] [GO:0001046 "core promoter
            sequence-specific DNA binding" evidence=IDA] [GO:0007165 "signal
            transduction" evidence=ISS] [GO:0072034 "renal vesicle induction"
            evidence=ISS] [GO:0090184 "positive regulation of kidney
            development" evidence=ISS] [GO:0090190 "positive regulation of
            branching involved in ureteric bud morphogenesis" evidence=ISS]
            [GO:0035326 "enhancer binding" evidence=IDA] [GO:0019933
            "cAMP-mediated signaling" evidence=IDA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=IMP;IDA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IMP;IDA] [GO:0001501 "skeletal system
            development" evidence=IMP] [GO:0003413 "chondrocyte differentiation
            involved in endochondral bone morphogenesis" evidence=IMP]
            [GO:0071300 "cellular response to retinoic acid" evidence=IEP]
            [GO:0010564 "regulation of cell cycle process" evidence=IMP]
            [GO:0008284 "positive regulation of cell proliferation"
            evidence=IMP] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=IMP] [GO:0043066 "negative regulation of
            apoptotic process" evidence=ISS;IMP] [GO:0003415 "chondrocyte
            hypertrophy" evidence=ISS] [GO:0014068 "positive regulation of
            phosphatidylinositol 3-kinase cascade" evidence=ISS] [GO:0004672
            "protein kinase activity" evidence=ISS] [GO:2000020 "positive
            regulation of male gonad development" evidence=IDA] [GO:0010634
            "positive regulation of epithelial cell migration" evidence=IMP]
            [GO:0001502 "cartilage condensation" evidence=ISS] [GO:0003179
            "heart valve morphogenesis" evidence=ISS] [GO:0030916 "otic vesicle
            formation" evidence=ISS] [GO:0051216 "cartilage development"
            evidence=ISS] [GO:0060729 "intestinal epithelial structure
            maintenance" evidence=ISS] [GO:0090103 "cochlea morphogenesis"
            evidence=ISS] [GO:0070168 "negative regulation of biomineral tissue
            development" evidence=ISS] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0001708 GO:GO:0007173
            GO:GO:0045892 GO:GO:0043066 GO:GO:0006461 GO:GO:0030155
            GO:GO:0071560 GO:GO:0019933 GO:GO:0070371 GO:GO:0071300
            GO:GO:0030198 GO:GO:0014068 GO:GO:0007283 GO:GO:0003682
            GO:GO:0003705 GO:GO:0001077 GO:GO:0006338 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0004672
            GO:GO:0071504 GO:GO:0001942 EMBL:CH471099 GO:GO:0032332
            GO:GO:0030279 GO:GO:0060009 GO:GO:0090090 GO:GO:0071260
            GO:GO:0035019 GO:GO:0001934 GO:GO:0090190 GO:GO:0071364
            GO:GO:0031018 GO:GO:0043491 GO:GO:0014032 GO:GO:0001502
            GO:GO:0045732 GO:GO:0001837 GO:GO:0050680 GO:GO:0001503
            GO:GO:0001658 GO:GO:0071347 GO:GO:0001158 GO:GO:0030858
            GO:GO:0048709 GO:GO:0010634 GO:GO:0016585 GO:GO:0006334
            GO:GO:0003413 GO:GO:0030879 GO:GO:0050679 GO:GO:0002053
            GO:GO:0001046 GO:GO:0030502 GO:GO:2000138 GO:GO:0061036
            GO:GO:0003203 GO:GO:0032331 GO:GO:0045662 GO:GO:0060008
            GO:GO:0030916 GO:GO:2000020 GO:GO:0046533 GO:GO:0060174
            GO:GO:0030903 GO:GO:0090103 GO:GO:0010564 GO:GO:0019100
            GO:GO:0003179 GO:GO:0070168 GO:GO:0060018 GO:GO:0035622
            GO:GO:0072190 GO:GO:0072289 GO:GO:0072197 GO:GO:0003188
            eggNOG:NOG295709 HOGENOM:HOG000108876 HOVERGEN:HBG002061 KO:K09270
            InterPro:IPR022151 Pfam:PF12444 GO:GO:2000741 GO:GO:0072034
            GO:GO:0060221 OrthoDB:EOG4TXBRZ GO:GO:0003415 GO:GO:0060517
            GO:GO:0060729 GO:GO:0002683 GO:GO:0060784 CTD:6662 EMBL:Z46629
            EMBL:S74506 EMBL:S74504 EMBL:S74505 EMBL:BT006875 EMBL:BC007951
            EMBL:BC056420 IPI:IPI00009713 PIR:A55204 RefSeq:NP_000337.1
            UniGene:Hs.647409 PDB:1S9M PDB:1SX9 PDB:4EUW PDBsum:1S9M
            PDBsum:1SX9 PDBsum:4EUW ProteinModelPortal:P48436 SMR:P48436
            IntAct:P48436 STRING:P48436 PhosphoSite:P48436 DMDM:1351096
            PRIDE:P48436 DNASU:6662 Ensembl:ENST00000245479 GeneID:6662
            KEGG:hsa:6662 UCSC:uc002jiw.3 GeneCards:GC17P070117 HGNC:HGNC:11204
            HPA:CAB022456 HPA:HPA001758 MIM:114290 MIM:278850 MIM:608160
            neXtProt:NX_P48436 Orphanet:140 Orphanet:2138 PharmGKB:PA36041
            InParanoid:P48436 OMA:GAGHVWM PhylomeDB:P48436 GenomeRNAi:6662
            NextBio:25973 ArrayExpress:P48436 Bgee:P48436 CleanEx:HS_SOX9
            Genevestigator:P48436 GermOnline:ENSG00000125398 Uniprot:P48436
        Length = 509

 Score = 113 (44.8 bits), Expect = 8.3e-06, P = 8.3e-06
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ ++E EK PFVE AE+ +  + K+
Sbjct:   110 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKD 168

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   169 HPDYKYQ 175


>UNIPROTKB|O18896 [details] [associations]
            symbol:SOX9 "Transcription factor SOX-9" species:9823 "Sus
            scrofa" [GO:0006468 "protein phosphorylation" evidence=ISS]
            [GO:0061036 "positive regulation of cartilage development"
            evidence=ISS] [GO:0002683 "negative regulation of immune system
            process" evidence=ISS] [GO:0060729 "intestinal epithelial structure
            maintenance" evidence=ISS] [GO:0014068 "positive regulation of
            phosphatidylinositol 3-kinase cascade" evidence=ISS] [GO:0043066
            "negative regulation of apoptotic process" evidence=ISS]
            [GO:0030916 "otic vesicle formation" evidence=ISS] [GO:0001708
            "cell fate specification" evidence=ISS] [GO:2000741 "positive
            regulation of mesenchymal stem cell differentiation" evidence=ISS]
            [GO:2000020 "positive regulation of male gonad development"
            evidence=ISS] [GO:0071560 "cellular response to transforming growth
            factor beta stimulus" evidence=ISS] [GO:0003682 "chromatin binding"
            evidence=ISS] [GO:0010564 "regulation of cell cycle process"
            evidence=ISS] [GO:0008284 "positive regulation of cell
            proliferation" evidence=ISS] [GO:0006338 "chromatin remodeling"
            evidence=ISS] [GO:0006334 "nucleosome assembly" evidence=ISS]
            [GO:0071504 "cellular response to heparin" evidence=ISS]
            [GO:0071364 "cellular response to epidermal growth factor stimulus"
            evidence=ISS] [GO:0071260 "cellular response to mechanical
            stimulus" evidence=ISS] [GO:0001934 "positive regulation of protein
            phosphorylation" evidence=ISS] [GO:0070371 "ERK1 and ERK2 cascade"
            evidence=ISS] [GO:0043491 "protein kinase B signaling cascade"
            evidence=ISS] [GO:0007173 "epidermal growth factor receptor
            signaling pathway" evidence=ISS] [GO:0010634 "positive regulation
            of epithelial cell migration" evidence=ISS] [GO:0070168 "negative
            regulation of biomineral tissue development" evidence=ISS]
            [GO:0030279 "negative regulation of ossification" evidence=ISS]
            [GO:0003170 "heart valve development" evidence=ISS] [GO:0001894
            "tissue homeostasis" evidence=ISS] [GO:0001158 "enhancer
            sequence-specific DNA binding" evidence=ISS] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=ISS] [GO:0061138
            "morphogenesis of a branching epithelium" evidence=ISS] [GO:0060784
            "regulation of cell proliferation involved in tissue homeostasis"
            evidence=ISS] [GO:0060517 "epithelial cell proliferation involved
            in prostatic bud elongation" evidence=ISS] [GO:0060221 "retinal rod
            cell differentiation" evidence=ISS] [GO:0060008 "Sertoli cell
            differentiation" evidence=ISS] [GO:0060041 "retina development in
            camera-type eye" evidence=ISS] [GO:0072289 "metanephric nephron
            tubule formation" evidence=ISS] [GO:0090090 "negative regulation of
            canonical Wnt receptor signaling pathway" evidence=ISS] [GO:0090103
            "cochlea morphogenesis" evidence=ISS] [GO:0051216 "cartilage
            development" evidence=ISS] [GO:0004672 "protein kinase activity"
            evidence=ISS] [GO:0003415 "chondrocyte hypertrophy" evidence=ISS]
            [GO:0050680 "negative regulation of epithelial cell proliferation"
            evidence=ISS] [GO:0050679 "positive regulation of epithelial cell
            proliferation" evidence=ISS] [GO:0046533 "negative regulation of
            photoreceptor cell differentiation" evidence=ISS] [GO:0045662
            "negative regulation of myoblast differentiation" evidence=ISS]
            [GO:0042981 "regulation of apoptotic process" evidence=ISS]
            [GO:0042127 "regulation of cell proliferation" evidence=ISS]
            [GO:0035019 "somatic stem cell maintenance" evidence=ISS]
            [GO:0032331 "negative regulation of chondrocyte differentiation"
            evidence=ISS] [GO:0030858 "positive regulation of epithelial cell
            differentiation" evidence=ISS] [GO:0019100 "male germ-line sex
            determination" evidence=ISS] [GO:0007283 "spermatogenesis"
            evidence=ISS] [GO:0003203 "endocardial cushion morphogenesis"
            evidence=ISS] [GO:0003179 "heart valve morphogenesis" evidence=ISS]
            [GO:0002053 "positive regulation of mesenchymal cell proliferation"
            evidence=ISS] [GO:0001837 "epithelial to mesenchymal transition"
            evidence=ISS] [GO:0001942 "hair follicle development" evidence=ISS]
            [GO:0043234 "protein complex" evidence=ISS] [GO:0035326 "enhancer
            binding" evidence=ISS] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISS] [GO:0001046 "core
            promoter sequence-specific DNA binding" evidence=ISS] [GO:0032332
            "positive regulation of chondrocyte differentiation" evidence=ISS]
            [GO:0001502 "cartilage condensation" evidence=ISS] [GO:0019933
            "cAMP-mediated signaling" evidence=ISS] [GO:0008584 "male gonad
            development" evidence=ISS] [GO:0006461 "protein complex assembly"
            evidence=ISS] [GO:0003413 "chondrocyte differentiation involved in
            endochondral bone morphogenesis" evidence=ISS] [GO:0001501
            "skeletal system development" evidence=ISS] [GO:0001077 "RNA
            polymerase II core promoter proximal region sequence-specific DNA
            binding transcription factor activity involved in positive
            regulation of transcription" evidence=IMP] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IMP] [GO:0005634 "nucleus" evidence=ISS] [GO:0090190
            "positive regulation of branching involved in ureteric bud
            morphogenesis" evidence=ISS] [GO:0090184 "positive regulation of
            kidney development" evidence=ISS] [GO:0072034 "renal vesicle
            induction" evidence=ISS] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=ISS] [GO:0007165 "signal
            transduction" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0001708 GO:GO:0007173 GO:GO:0045892 GO:GO:0043066
            GO:GO:0006461 GO:GO:0071560 GO:GO:0019933 GO:GO:0070371
            GO:GO:0014068 GO:GO:0007283 GO:GO:0003682 GO:GO:0003705
            GO:GO:0001077 GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0004672 GO:GO:0071504
            GO:GO:0001942 GO:GO:0032332 GO:GO:0030279 GO:GO:0090090
            GO:GO:0071260 GO:GO:0035019 GO:GO:0001934 GO:GO:0090190
            GO:GO:0071364 GO:GO:0043491 GO:GO:0001502 GO:GO:0001837
            GO:GO:0050680 GO:GO:0001158 GO:GO:0030858 GO:GO:0010634
            GO:GO:0016585 GO:GO:0006334 GO:GO:0003413 GO:GO:0050679
            GO:GO:0002053 GO:GO:0001046 GO:GO:0061036 GO:GO:0003203
            GO:GO:0032331 GO:GO:0045662 GO:GO:0060008 GO:GO:0030916
            GO:GO:2000020 GO:GO:0046533 GO:GO:0090103 GO:GO:0010564
            GO:GO:0019100 GO:GO:0003179 GO:GO:0070168 GO:GO:0072289
            eggNOG:NOG295709 HOGENOM:HOG000108876 HOVERGEN:HBG002061 KO:K09270
            InterPro:IPR022151 Pfam:PF12444 GO:GO:2000741 GO:GO:0072034
            GO:GO:0060221 OrthoDB:EOG4TXBRZ GO:GO:0003415 GO:GO:0060517
            GO:GO:0060729 GO:GO:0002683 GO:GO:0060784 CTD:6662 EMBL:AF029696
            RefSeq:NP_999008.1 UniGene:Ssc.16373 ProteinModelPortal:O18896
            SMR:O18896 STRING:O18896 GeneID:396840 KEGG:ssc:396840
            Uniprot:O18896
        Length = 509

 Score = 113 (44.8 bits), Expect = 8.3e-06, P = 8.3e-06
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ ++E EK PFVE AE+ +  + K+
Sbjct:   110 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKD 168

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   169 HPDYKYQ 175


>UNIPROTKB|P61753 [details] [associations]
            symbol:SOX9 "Transcription factor SOX-9" species:9544
            "Macaca mulatta" [GO:0001046 "core promoter sequence-specific DNA
            binding" evidence=ISS] [GO:0001077 "RNA polymerase II core promoter
            proximal region sequence-specific DNA binding transcription factor
            activity involved in positive regulation of transcription"
            evidence=ISS] [GO:0001158 "enhancer sequence-specific DNA binding"
            evidence=ISS] [GO:0001501 "skeletal system development"
            evidence=ISS] [GO:0001502 "cartilage condensation" evidence=ISS]
            [GO:0001708 "cell fate specification" evidence=ISS] [GO:0001837
            "epithelial to mesenchymal transition" evidence=ISS] [GO:0001894
            "tissue homeostasis" evidence=ISS] [GO:0001934 "positive regulation
            of protein phosphorylation" evidence=ISS] [GO:0001942 "hair
            follicle development" evidence=ISS] [GO:0002053 "positive
            regulation of mesenchymal cell proliferation" evidence=ISS]
            [GO:0002683 "negative regulation of immune system process"
            evidence=ISS] [GO:0003170 "heart valve development" evidence=ISS]
            [GO:0003179 "heart valve morphogenesis" evidence=ISS] [GO:0003203
            "endocardial cushion morphogenesis" evidence=ISS] [GO:0003413
            "chondrocyte differentiation involved in endochondral bone
            morphogenesis" evidence=ISS] [GO:0003415 "chondrocyte hypertrophy"
            evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0004672 "protein kinase activity"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006334
            "nucleosome assembly" evidence=ISS] [GO:0006338 "chromatin
            remodeling" evidence=ISS] [GO:0006461 "protein complex assembly"
            evidence=ISS] [GO:0006468 "protein phosphorylation" evidence=ISS]
            [GO:0007165 "signal transduction" evidence=ISS] [GO:0007173
            "epidermal growth factor receptor signaling pathway" evidence=ISS]
            [GO:0007283 "spermatogenesis" evidence=ISS] [GO:0008284 "positive
            regulation of cell proliferation" evidence=ISS] [GO:0008584 "male
            gonad development" evidence=ISS] [GO:0010564 "regulation of cell
            cycle process" evidence=ISS] [GO:0010634 "positive regulation of
            epithelial cell migration" evidence=ISS] [GO:0014068 "positive
            regulation of phosphatidylinositol 3-kinase cascade" evidence=ISS]
            [GO:0019100 "male germ-line sex determination" evidence=ISS]
            [GO:0019933 "cAMP-mediated signaling" evidence=ISS] [GO:0030279
            "negative regulation of ossification" evidence=ISS] [GO:0030858
            "positive regulation of epithelial cell differentiation"
            evidence=ISS] [GO:0030916 "otic vesicle formation" evidence=ISS]
            [GO:0032331 "negative regulation of chondrocyte differentiation"
            evidence=ISS] [GO:0032332 "positive regulation of chondrocyte
            differentiation" evidence=ISS] [GO:0035019 "somatic stem cell
            maintenance" evidence=ISS] [GO:0035326 "enhancer binding"
            evidence=ISS] [GO:0042127 "regulation of cell proliferation"
            evidence=ISS] [GO:0042981 "regulation of apoptotic process"
            evidence=ISS] [GO:0043066 "negative regulation of apoptotic
            process" evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
            [GO:0043491 "protein kinase B signaling cascade" evidence=ISS]
            [GO:0045662 "negative regulation of myoblast differentiation"
            evidence=ISS] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0046533 "negative regulation of photoreceptor cell
            differentiation" evidence=ISS] [GO:0050679 "positive regulation of
            epithelial cell proliferation" evidence=ISS] [GO:0050680 "negative
            regulation of epithelial cell proliferation" evidence=ISS]
            [GO:0051216 "cartilage development" evidence=ISS] [GO:0060008
            "Sertoli cell differentiation" evidence=ISS] [GO:0060041 "retina
            development in camera-type eye" evidence=ISS] [GO:0060221 "retinal
            rod cell differentiation" evidence=ISS] [GO:0060517 "epithelial
            cell proliferation involved in prostatic bud elongation"
            evidence=ISS] [GO:0060729 "intestinal epithelial structure
            maintenance" evidence=ISS] [GO:0060784 "regulation of cell
            proliferation involved in tissue homeostasis" evidence=ISS]
            [GO:0061036 "positive regulation of cartilage development"
            evidence=ISS] [GO:0061138 "morphogenesis of a branching epithelium"
            evidence=ISS] [GO:0070168 "negative regulation of biomineral tissue
            development" evidence=ISS] [GO:0070371 "ERK1 and ERK2 cascade"
            evidence=ISS] [GO:0071260 "cellular response to mechanical
            stimulus" evidence=ISS] [GO:0071364 "cellular response to epidermal
            growth factor stimulus" evidence=ISS] [GO:0071504 "cellular
            response to heparin" evidence=ISS] [GO:0071560 "cellular response
            to transforming growth factor beta stimulus" evidence=ISS]
            [GO:0072034 "renal vesicle induction" evidence=ISS] [GO:0072289
            "metanephric nephron tubule formation" evidence=ISS] [GO:0090090
            "negative regulation of canonical Wnt receptor signaling pathway"
            evidence=ISS] [GO:0090103 "cochlea morphogenesis" evidence=ISS]
            [GO:0090184 "positive regulation of kidney development"
            evidence=ISS] [GO:0090190 "positive regulation of branching
            involved in ureteric bud morphogenesis" evidence=ISS] [GO:2000020
            "positive regulation of male gonad development" evidence=ISS]
            [GO:2000741 "positive regulation of mesenchymal stem cell
            differentiation" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0001708 GO:GO:0007173 GO:GO:0045892 GO:GO:0043066
            GO:GO:0006461 GO:GO:0071560 GO:GO:0019933 GO:GO:0070371
            GO:GO:0014068 GO:GO:0007283 GO:GO:0003682 GO:GO:0003705
            GO:GO:0001077 GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0004672 GO:GO:0071504
            GO:GO:0001942 GO:GO:0032332 GO:GO:0030279 GO:GO:0090090
            GO:GO:0071260 GO:GO:0035019 GO:GO:0001934 GO:GO:0090190
            GO:GO:0071364 GO:GO:0043491 GO:GO:0001502 GO:GO:0001837
            GO:GO:0050680 GO:GO:0001158 GO:GO:0030858 GO:GO:0010634
            GO:GO:0016585 GO:GO:0006334 GO:GO:0003413 GO:GO:0050679
            GO:GO:0002053 GO:GO:0001046 GO:GO:0061036 GO:GO:0003203
            GO:GO:0032331 GO:GO:0045662 GO:GO:0060008 GO:GO:0030916
            GO:GO:2000020 GO:GO:0046533 GO:GO:0090103 GO:GO:0010564
            GO:GO:0019100 GO:GO:0003179 GO:GO:0070168 GO:GO:0072289
            eggNOG:NOG295709 HOGENOM:HOG000108876 HOVERGEN:HBG002061 KO:K09270
            InterPro:IPR022151 Pfam:PF12444 GO:GO:2000741 GO:GO:0072034
            GO:GO:0060221 OrthoDB:EOG4TXBRZ GO:GO:0003415 GO:GO:0060517
            GO:GO:0060729 GO:GO:0002683 GO:GO:0060784 CTD:6662 EMBL:AF322900
            RefSeq:NP_001028040.1 UniGene:Mmu.3543 ProteinModelPortal:P61753
            SMR:P61753 STRING:P61753 PRIDE:P61753 GeneID:574208 KEGG:mcc:574208
            InParanoid:P61753 NextBio:19987290 Uniprot:P61753
        Length = 509

 Score = 113 (44.8 bits), Expect = 8.3e-06, P = 8.3e-06
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ ++E EK PFVE AE+ +  + K+
Sbjct:   110 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKD 168

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   169 HPDYKYQ 175


>UNIPROTKB|P61754 [details] [associations]
            symbol:SOX9 "Transcription factor SOX-9" species:9600
            "Pongo pygmaeus" [GO:0001046 "core promoter sequence-specific DNA
            binding" evidence=ISS] [GO:0001077 "RNA polymerase II core promoter
            proximal region sequence-specific DNA binding transcription factor
            activity involved in positive regulation of transcription"
            evidence=ISS] [GO:0001158 "enhancer sequence-specific DNA binding"
            evidence=ISS] [GO:0001501 "skeletal system development"
            evidence=ISS] [GO:0001502 "cartilage condensation" evidence=ISS]
            [GO:0001708 "cell fate specification" evidence=ISS] [GO:0001837
            "epithelial to mesenchymal transition" evidence=ISS] [GO:0001894
            "tissue homeostasis" evidence=ISS] [GO:0001934 "positive regulation
            of protein phosphorylation" evidence=ISS] [GO:0001942 "hair
            follicle development" evidence=ISS] [GO:0002053 "positive
            regulation of mesenchymal cell proliferation" evidence=ISS]
            [GO:0002683 "negative regulation of immune system process"
            evidence=ISS] [GO:0003170 "heart valve development" evidence=ISS]
            [GO:0003179 "heart valve morphogenesis" evidence=ISS] [GO:0003203
            "endocardial cushion morphogenesis" evidence=ISS] [GO:0003413
            "chondrocyte differentiation involved in endochondral bone
            morphogenesis" evidence=ISS] [GO:0003415 "chondrocyte hypertrophy"
            evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0004672 "protein kinase activity"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006334
            "nucleosome assembly" evidence=ISS] [GO:0006338 "chromatin
            remodeling" evidence=ISS] [GO:0006461 "protein complex assembly"
            evidence=ISS] [GO:0006468 "protein phosphorylation" evidence=ISS]
            [GO:0007165 "signal transduction" evidence=ISS] [GO:0007173
            "epidermal growth factor receptor signaling pathway" evidence=ISS]
            [GO:0007283 "spermatogenesis" evidence=ISS] [GO:0008284 "positive
            regulation of cell proliferation" evidence=ISS] [GO:0008584 "male
            gonad development" evidence=ISS] [GO:0010564 "regulation of cell
            cycle process" evidence=ISS] [GO:0010634 "positive regulation of
            epithelial cell migration" evidence=ISS] [GO:0014068 "positive
            regulation of phosphatidylinositol 3-kinase cascade" evidence=ISS]
            [GO:0019100 "male germ-line sex determination" evidence=ISS]
            [GO:0019933 "cAMP-mediated signaling" evidence=ISS] [GO:0030279
            "negative regulation of ossification" evidence=ISS] [GO:0030858
            "positive regulation of epithelial cell differentiation"
            evidence=ISS] [GO:0030916 "otic vesicle formation" evidence=ISS]
            [GO:0032331 "negative regulation of chondrocyte differentiation"
            evidence=ISS] [GO:0032332 "positive regulation of chondrocyte
            differentiation" evidence=ISS] [GO:0035019 "somatic stem cell
            maintenance" evidence=ISS] [GO:0035326 "enhancer binding"
            evidence=ISS] [GO:0042127 "regulation of cell proliferation"
            evidence=ISS] [GO:0042981 "regulation of apoptotic process"
            evidence=ISS] [GO:0043066 "negative regulation of apoptotic
            process" evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
            [GO:0043491 "protein kinase B signaling cascade" evidence=ISS]
            [GO:0045662 "negative regulation of myoblast differentiation"
            evidence=ISS] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0046533 "negative regulation of photoreceptor cell
            differentiation" evidence=ISS] [GO:0050679 "positive regulation of
            epithelial cell proliferation" evidence=ISS] [GO:0050680 "negative
            regulation of epithelial cell proliferation" evidence=ISS]
            [GO:0051216 "cartilage development" evidence=ISS] [GO:0060008
            "Sertoli cell differentiation" evidence=ISS] [GO:0060041 "retina
            development in camera-type eye" evidence=ISS] [GO:0060221 "retinal
            rod cell differentiation" evidence=ISS] [GO:0060517 "epithelial
            cell proliferation involved in prostatic bud elongation"
            evidence=ISS] [GO:0060729 "intestinal epithelial structure
            maintenance" evidence=ISS] [GO:0060784 "regulation of cell
            proliferation involved in tissue homeostasis" evidence=ISS]
            [GO:0061036 "positive regulation of cartilage development"
            evidence=ISS] [GO:0061138 "morphogenesis of a branching epithelium"
            evidence=ISS] [GO:0070168 "negative regulation of biomineral tissue
            development" evidence=ISS] [GO:0070371 "ERK1 and ERK2 cascade"
            evidence=ISS] [GO:0071260 "cellular response to mechanical
            stimulus" evidence=ISS] [GO:0071364 "cellular response to epidermal
            growth factor stimulus" evidence=ISS] [GO:0071504 "cellular
            response to heparin" evidence=ISS] [GO:0071560 "cellular response
            to transforming growth factor beta stimulus" evidence=ISS]
            [GO:0072034 "renal vesicle induction" evidence=ISS] [GO:0072289
            "metanephric nephron tubule formation" evidence=ISS] [GO:0090090
            "negative regulation of canonical Wnt receptor signaling pathway"
            evidence=ISS] [GO:0090103 "cochlea morphogenesis" evidence=ISS]
            [GO:0090184 "positive regulation of kidney development"
            evidence=ISS] [GO:0090190 "positive regulation of branching
            involved in ureteric bud morphogenesis" evidence=ISS] [GO:2000020
            "positive regulation of male gonad development" evidence=ISS]
            [GO:2000741 "positive regulation of mesenchymal stem cell
            differentiation" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0001708 GO:GO:0007173 GO:GO:0045892 GO:GO:0043066
            GO:GO:0006461 GO:GO:0071560 GO:GO:0019933 GO:GO:0070371
            GO:GO:0014068 GO:GO:0007283 GO:GO:0003682 GO:GO:0003705
            GO:GO:0001077 GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0004672 GO:GO:0071504
            GO:GO:0001942 GO:GO:0032332 GO:GO:0030279 GO:GO:0090090
            GO:GO:0071260 GO:GO:0035019 GO:GO:0001934 GO:GO:0090190
            GO:GO:0071364 GO:GO:0043491 GO:GO:0001502 GO:GO:0001837
            GO:GO:0050680 GO:GO:0001158 GO:GO:0030858 GO:GO:0010634
            GO:GO:0016585 GO:GO:0006334 GO:GO:0003413 GO:GO:0050679
            GO:GO:0002053 GO:GO:0001046 GO:GO:0061036 GO:GO:0003203
            GO:GO:0032331 GO:GO:0045662 GO:GO:0060008 GO:GO:0030916
            GO:GO:2000020 GO:GO:0046533 GO:GO:0090103 GO:GO:0010564
            GO:GO:0019100 GO:GO:0003179 GO:GO:0070168 GO:GO:0072289
            eggNOG:NOG295709 HOGENOM:HOG000108876 HOVERGEN:HBG002061
            InterPro:IPR022151 Pfam:PF12444 GO:GO:2000741 GO:GO:0072034
            GO:GO:0060221 GO:GO:0003415 GO:GO:0060517 GO:GO:0060729
            GO:GO:0002683 GO:GO:0060784 EMBL:AF322898 ProteinModelPortal:P61754
            SMR:P61754 STRING:P61754 PRIDE:P61754 InParanoid:P61754
            Uniprot:P61754
        Length = 509

 Score = 113 (44.8 bits), Expect = 8.3e-06, P = 8.3e-06
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ ++E EK PFVE AE+ +  + K+
Sbjct:   110 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKD 168

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   169 HPDYKYQ 175


>UNIPROTKB|Q9BG91 [details] [associations]
            symbol:SOX9 "Transcription factor SOX-9" species:9483
            "Callithrix jacchus" [GO:0001046 "core promoter sequence-specific
            DNA binding" evidence=ISS] [GO:0001077 "RNA polymerase II core
            promoter proximal region sequence-specific DNA binding
            transcription factor activity involved in positive regulation of
            transcription" evidence=ISS] [GO:0001158 "enhancer
            sequence-specific DNA binding" evidence=ISS] [GO:0001501 "skeletal
            system development" evidence=ISS] [GO:0001502 "cartilage
            condensation" evidence=ISS] [GO:0001708 "cell fate specification"
            evidence=ISS] [GO:0001837 "epithelial to mesenchymal transition"
            evidence=ISS] [GO:0001894 "tissue homeostasis" evidence=ISS]
            [GO:0001934 "positive regulation of protein phosphorylation"
            evidence=ISS] [GO:0001942 "hair follicle development" evidence=ISS]
            [GO:0002053 "positive regulation of mesenchymal cell proliferation"
            evidence=ISS] [GO:0002683 "negative regulation of immune system
            process" evidence=ISS] [GO:0003170 "heart valve development"
            evidence=ISS] [GO:0003179 "heart valve morphogenesis" evidence=ISS]
            [GO:0003203 "endocardial cushion morphogenesis" evidence=ISS]
            [GO:0003413 "chondrocyte differentiation involved in endochondral
            bone morphogenesis" evidence=ISS] [GO:0003415 "chondrocyte
            hypertrophy" evidence=ISS] [GO:0003682 "chromatin binding"
            evidence=ISS] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=ISS] [GO:0004672 "protein kinase activity" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0006334 "nucleosome
            assembly" evidence=ISS] [GO:0006338 "chromatin remodeling"
            evidence=ISS] [GO:0006461 "protein complex assembly" evidence=ISS]
            [GO:0006468 "protein phosphorylation" evidence=ISS] [GO:0007165
            "signal transduction" evidence=ISS] [GO:0007173 "epidermal growth
            factor receptor signaling pathway" evidence=ISS] [GO:0007283
            "spermatogenesis" evidence=ISS] [GO:0008284 "positive regulation of
            cell proliferation" evidence=ISS] [GO:0010564 "regulation of cell
            cycle process" evidence=ISS] [GO:0010634 "positive regulation of
            epithelial cell migration" evidence=ISS] [GO:0014068 "positive
            regulation of phosphatidylinositol 3-kinase cascade" evidence=ISS]
            [GO:0019100 "male germ-line sex determination" evidence=ISS]
            [GO:0019933 "cAMP-mediated signaling" evidence=ISS] [GO:0030279
            "negative regulation of ossification" evidence=ISS] [GO:0030858
            "positive regulation of epithelial cell differentiation"
            evidence=ISS] [GO:0030916 "otic vesicle formation" evidence=ISS]
            [GO:0032331 "negative regulation of chondrocyte differentiation"
            evidence=ISS] [GO:0032332 "positive regulation of chondrocyte
            differentiation" evidence=ISS] [GO:0035019 "somatic stem cell
            maintenance" evidence=ISS] [GO:0035326 "enhancer binding"
            evidence=ISS] [GO:0042127 "regulation of cell proliferation"
            evidence=ISS] [GO:0042981 "regulation of apoptotic process"
            evidence=ISS] [GO:0043066 "negative regulation of apoptotic
            process" evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
            [GO:0043491 "protein kinase B signaling cascade" evidence=ISS]
            [GO:0045662 "negative regulation of myoblast differentiation"
            evidence=ISS] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0046533 "negative regulation of photoreceptor cell
            differentiation" evidence=ISS] [GO:0050679 "positive regulation of
            epithelial cell proliferation" evidence=ISS] [GO:0050680 "negative
            regulation of epithelial cell proliferation" evidence=ISS]
            [GO:0051216 "cartilage development" evidence=ISS] [GO:0060008
            "Sertoli cell differentiation" evidence=ISS] [GO:0060041 "retina
            development in camera-type eye" evidence=ISS] [GO:0060221 "retinal
            rod cell differentiation" evidence=ISS] [GO:0060517 "epithelial
            cell proliferation involved in prostatic bud elongation"
            evidence=ISS] [GO:0060729 "intestinal epithelial structure
            maintenance" evidence=ISS] [GO:0060784 "regulation of cell
            proliferation involved in tissue homeostasis" evidence=ISS]
            [GO:0061138 "morphogenesis of a branching epithelium" evidence=ISS]
            [GO:0070168 "negative regulation of biomineral tissue development"
            evidence=ISS] [GO:0070371 "ERK1 and ERK2 cascade" evidence=ISS]
            [GO:0071260 "cellular response to mechanical stimulus"
            evidence=ISS] [GO:0071364 "cellular response to epidermal growth
            factor stimulus" evidence=ISS] [GO:0071504 "cellular response to
            heparin" evidence=ISS] [GO:0072034 "renal vesicle induction"
            evidence=ISS] [GO:0072289 "metanephric nephron tubule formation"
            evidence=ISS] [GO:0090090 "negative regulation of canonical Wnt
            receptor signaling pathway" evidence=ISS] [GO:0090103 "cochlea
            morphogenesis" evidence=ISS] [GO:0090184 "positive regulation of
            kidney development" evidence=ISS] [GO:0090190 "positive regulation
            of branching involved in ureteric bud morphogenesis" evidence=ISS]
            [GO:2000020 "positive regulation of male gonad development"
            evidence=ISS] [GO:2000741 "positive regulation of mesenchymal stem
            cell differentiation" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0001708 GO:GO:0007173 GO:GO:0045892 GO:GO:0043066
            GO:GO:0006461 GO:GO:0019933 GO:GO:0070371 GO:GO:0014068
            GO:GO:0007283 GO:GO:0003682 GO:GO:0003705 GO:GO:0001077
            GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0004672 GO:GO:0071504 GO:GO:0001942
            GO:GO:0032332 GO:GO:0030279 GO:GO:0090090 GO:GO:0071260
            GO:GO:0035019 GO:GO:0001934 GO:GO:0090190 GO:GO:0071364
            GO:GO:0043491 GO:GO:0001502 GO:GO:0001837 GO:GO:0050680
            GO:GO:0001158 GO:GO:0030858 GO:GO:0010634 GO:GO:0016585
            GO:GO:0006334 GO:GO:0003413 GO:GO:0050679 GO:GO:0002053
            GO:GO:0001046 GO:GO:0003203 GO:GO:0032331 GO:GO:0045662
            GO:GO:0060008 GO:GO:0030916 GO:GO:2000020 GO:GO:0046533
            GO:GO:0090103 GO:GO:0010564 GO:GO:0019100 GO:GO:0003179
            GO:GO:0070168 GO:GO:0072289 HOVERGEN:HBG002061 InterPro:IPR022151
            Pfam:PF12444 GO:GO:2000741 GO:GO:0072034 GO:GO:0060221
            EMBL:AF322899 ProteinModelPortal:Q9BG91 SMR:Q9BG91
            OrthoDB:EOG4TXBRZ GO:GO:0003415 GO:GO:0060517 GO:GO:0060729
            GO:GO:0002683 GO:GO:0060784 Uniprot:Q9BG91
        Length = 509

 Score = 113 (44.8 bits), Expect = 8.3e-06, P = 8.3e-06
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ ++E EK PFVE AE+ +  + K+
Sbjct:   110 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKD 168

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   169 HPDYKYQ 175


>UNIPROTKB|F1RV30 [details] [associations]
            symbol:SOX9 "Transcription factor SOX-9" species:9823 "Sus
            scrofa" [GO:0035622 "intrahepatic bile duct development"
            evidence=IEA] [GO:0035019 "somatic stem cell maintenance"
            evidence=IEA] [GO:0034236 "protein kinase A catalytic subunit
            binding" evidence=IEA] [GO:0032332 "positive regulation of
            chondrocyte differentiation" evidence=IEA] [GO:0032331 "negative
            regulation of chondrocyte differentiation" evidence=IEA]
            [GO:0031018 "endocrine pancreas development" evidence=IEA]
            [GO:0030916 "otic vesicle formation" evidence=IEA] [GO:0030903
            "notochord development" evidence=IEA] [GO:0030879 "mammary gland
            development" evidence=IEA] [GO:0030858 "positive regulation of
            epithelial cell differentiation" evidence=IEA] [GO:0030502
            "negative regulation of bone mineralization" evidence=IEA]
            [GO:0030198 "extracellular matrix organization" evidence=IEA]
            [GO:0030155 "regulation of cell adhesion" evidence=IEA] [GO:0019933
            "cAMP-mediated signaling" evidence=IEA] [GO:0019100 "male germ-line
            sex determination" evidence=IEA] [GO:0014068 "positive regulation
            of phosphatidylinositol 3-kinase cascade" evidence=IEA] [GO:0014032
            "neural crest cell development" evidence=IEA] [GO:0010634 "positive
            regulation of epithelial cell migration" evidence=IEA] [GO:0010564
            "regulation of cell cycle process" evidence=IEA] [GO:0008013
            "beta-catenin binding" evidence=IEA] [GO:0007283 "spermatogenesis"
            evidence=IEA] [GO:0007173 "epidermal growth factor receptor
            signaling pathway" evidence=IEA] [GO:0006461 "protein complex
            assembly" evidence=IEA] [GO:0006338 "chromatin remodeling"
            evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
            [GO:0005667 "transcription factor complex" evidence=IEA]
            [GO:0004672 "protein kinase activity" evidence=IEA] [GO:0003705
            "RNA polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0003682 "chromatin
            binding" evidence=IEA] [GO:0003415 "chondrocyte hypertrophy"
            evidence=IEA] [GO:0003413 "chondrocyte differentiation involved in
            endochondral bone morphogenesis" evidence=IEA] [GO:0003203
            "endocardial cushion morphogenesis" evidence=IEA] [GO:0003188
            "heart valve formation" evidence=IEA] [GO:0002683 "negative
            regulation of immune system process" evidence=IEA] [GO:0002053
            "positive regulation of mesenchymal cell proliferation"
            evidence=IEA] [GO:0001942 "hair follicle development" evidence=IEA]
            [GO:0001934 "positive regulation of protein phosphorylation"
            evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
            evidence=IEA] [GO:0001708 "cell fate specification" evidence=IEA]
            [GO:0001658 "branching involved in ureteric bud morphogenesis"
            evidence=IEA] [GO:0001503 "ossification" evidence=IEA] [GO:0001502
            "cartilage condensation" evidence=IEA] [GO:0001158 "enhancer
            sequence-specific DNA binding" evidence=IEA] [GO:0001077 "RNA
            polymerase II core promoter proximal region sequence-specific DNA
            binding transcription factor activity involved in positive
            regulation of transcription" evidence=IEA] [GO:0001046 "core
            promoter sequence-specific DNA binding" evidence=IEA] [GO:2000741
            "positive regulation of mesenchymal stem cell differentiation"
            evidence=IEA] [GO:2000138 "positive regulation of cell
            proliferation involved in heart morphogenesis" evidence=IEA]
            [GO:2000020 "positive regulation of male gonad development"
            evidence=IEA] [GO:0090190 "positive regulation of branching
            involved in ureteric bud morphogenesis" evidence=IEA] [GO:0090103
            "cochlea morphogenesis" evidence=IEA] [GO:0090090 "negative
            regulation of canonical Wnt receptor signaling pathway"
            evidence=IEA] [GO:0072289 "metanephric nephron tubule formation"
            evidence=IEA] [GO:0072197 "ureter morphogenesis" evidence=IEA]
            [GO:0072190 "ureter urothelium development" evidence=IEA]
            [GO:0072034 "renal vesicle induction" evidence=IEA] [GO:0071560
            "cellular response to transforming growth factor beta stimulus"
            evidence=IEA] [GO:0071504 "cellular response to heparin"
            evidence=IEA] [GO:0071364 "cellular response to epidermal growth
            factor stimulus" evidence=IEA] [GO:0071347 "cellular response to
            interleukin-1" evidence=IEA] [GO:0071300 "cellular response to
            retinoic acid" evidence=IEA] [GO:0071260 "cellular response to
            mechanical stimulus" evidence=IEA] [GO:0070371 "ERK1 and ERK2
            cascade" evidence=IEA] [GO:0061036 "positive regulation of
            cartilage development" evidence=IEA] [GO:0060784 "regulation of
            cell proliferation involved in tissue homeostasis" evidence=IEA]
            [GO:0060729 "intestinal epithelial structure maintenance"
            evidence=IEA] [GO:0060517 "epithelial cell proliferation involved
            in prostatic bud elongation" evidence=IEA] [GO:0060221 "retinal rod
            cell differentiation" evidence=IEA] [GO:0060174 "limb bud
            formation" evidence=IEA] [GO:0060018 "astrocyte fate commitment"
            evidence=IEA] [GO:0060009 "Sertoli cell development" evidence=IEA]
            [GO:0050680 "negative regulation of epithelial cell proliferation"
            evidence=IEA] [GO:0050679 "positive regulation of epithelial cell
            proliferation" evidence=IEA] [GO:0048709 "oligodendrocyte
            differentiation" evidence=IEA] [GO:0046533 "negative regulation of
            photoreceptor cell differentiation" evidence=IEA] [GO:0045892
            "negative regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0045732 "positive regulation of protein catabolic process"
            evidence=IEA] [GO:0045662 "negative regulation of myoblast
            differentiation" evidence=IEA] [GO:0043491 "protein kinase B
            signaling cascade" evidence=IEA] [GO:0043066 "negative regulation
            of apoptotic process" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0001708 GO:GO:0007173 GO:GO:0045892 GO:GO:0043066
            GO:GO:0006461 GO:GO:0030155 GO:GO:0071560 GO:GO:0019933
            GO:GO:0070371 GO:GO:0071300 GO:GO:0030198 GO:GO:0014068
            GO:GO:0007283 GO:GO:0003682 GO:GO:0003705 GO:GO:0001077
            GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0004672 GO:GO:0071504 GO:GO:0001942
            GO:GO:0032332 GO:GO:0060009 GO:GO:0090090 GO:GO:0071260
            GO:GO:0035019 GO:GO:0001934 GO:GO:0090190 GO:GO:0071364
            GO:GO:0031018 GO:GO:0043491 GO:GO:0014032 GO:GO:0001502
            GO:GO:0045732 GO:GO:0001837 GO:GO:0050680 GO:GO:0001503
            GO:GO:0001658 GO:GO:0071347 GO:GO:0001158 GO:GO:0030858
            GO:GO:0048709 GO:GO:0010634 GO:GO:0016585 GO:GO:0006334
            GO:GO:0003413 GO:GO:0030879 GO:GO:0050679 GO:GO:0002053
            GO:GO:0001046 GO:GO:0030502 GO:GO:2000138 GO:GO:0061036
            GO:GO:0003203 GO:GO:0032331 GO:GO:0045662 GO:GO:0030916
            GO:GO:2000020 GO:GO:0046533 GO:GO:0060174 GO:GO:0030903
            GO:GO:0090103 GO:GO:0010564 GO:GO:0019100 GO:GO:0060018
            GO:GO:0035622 GO:GO:0072190 GO:GO:0072289 GO:GO:0072197
            GO:GO:0003188 GeneTree:ENSGT00670000097649 InterPro:IPR022151
            Pfam:PF12444 GO:GO:2000741 GO:GO:0072034 GO:GO:0060221
            GO:GO:0003415 GO:GO:0060517 GO:GO:0060729 GO:GO:0002683
            GO:GO:0060784 OMA:GAGHVWM EMBL:CU640384 Ensembl:ENSSSCT00000018780
            ArrayExpress:F1RV30 Uniprot:F1RV30
        Length = 511

 Score = 113 (44.8 bits), Expect = 8.4e-06, P = 8.4e-06
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ ++E EK PFVE AE+ +  + K+
Sbjct:   110 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKD 168

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   169 HPDYKYQ 175


>UNIPROTKB|Q7YRJ7 [details] [associations]
            symbol:SOX9 "Transcription factor SOX-9" species:9615
            "Canis lupus familiaris" [GO:0006468 "protein phosphorylation"
            evidence=ISS] [GO:0010564 "regulation of cell cycle process"
            evidence=ISS] [GO:0007173 "epidermal growth factor receptor
            signaling pathway" evidence=ISS] [GO:0003170 "heart valve
            development" evidence=ISS] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0060784 "regulation of cell proliferation involved in tissue
            homeostasis" evidence=ISS] [GO:0004672 "protein kinase activity"
            evidence=ISS] [GO:0045662 "negative regulation of myoblast
            differentiation" evidence=ISS] [GO:0032331 "negative regulation of
            chondrocyte differentiation" evidence=ISS] [GO:0007283
            "spermatogenesis" evidence=ISS] [GO:0002053 "positive regulation of
            mesenchymal cell proliferation" evidence=ISS] [GO:0003413
            "chondrocyte differentiation involved in endochondral bone
            morphogenesis" evidence=ISS] [GO:2000741 "positive regulation of
            mesenchymal stem cell differentiation" evidence=ISS] [GO:2000020
            "positive regulation of male gonad development" evidence=ISS]
            [GO:0003682 "chromatin binding" evidence=ISS] [GO:0006338
            "chromatin remodeling" evidence=ISS] [GO:0006334 "nucleosome
            assembly" evidence=ISS] [GO:0071504 "cellular response to heparin"
            evidence=ISS] [GO:0071364 "cellular response to epidermal growth
            factor stimulus" evidence=ISS] [GO:0071260 "cellular response to
            mechanical stimulus" evidence=ISS] [GO:0070371 "ERK1 and ERK2
            cascade" evidence=ISS] [GO:0001934 "positive regulation of protein
            phosphorylation" evidence=ISS] [GO:0043491 "protein kinase B
            signaling cascade" evidence=ISS] [GO:0010634 "positive regulation
            of epithelial cell migration" evidence=ISS] [GO:0070168 "negative
            regulation of biomineral tissue development" evidence=ISS]
            [GO:0030279 "negative regulation of ossification" evidence=ISS]
            [GO:0002683 "negative regulation of immune system process"
            evidence=ISS] [GO:0001894 "tissue homeostasis" evidence=ISS]
            [GO:0001158 "enhancer sequence-specific DNA binding" evidence=ISS]
            [GO:0003705 "RNA polymerase II distal enhancer sequence-specific
            DNA binding transcription factor activity" evidence=ISS]
            [GO:0061138 "morphogenesis of a branching epithelium" evidence=ISS]
            [GO:0060729 "intestinal epithelial structure maintenance"
            evidence=ISS] [GO:0060517 "epithelial cell proliferation involved
            in prostatic bud elongation" evidence=ISS] [GO:0060221 "retinal rod
            cell differentiation" evidence=ISS] [GO:0060008 "Sertoli cell
            differentiation" evidence=ISS] [GO:0060041 "retina development in
            camera-type eye" evidence=ISS] [GO:0072289 "metanephric nephron
            tubule formation" evidence=ISS] [GO:0090090 "negative regulation of
            canonical Wnt receptor signaling pathway" evidence=ISS] [GO:0090103
            "cochlea morphogenesis" evidence=ISS] [GO:0051216 "cartilage
            development" evidence=ISS] [GO:0014068 "positive regulation of
            phosphatidylinositol 3-kinase cascade" evidence=ISS] [GO:0003415
            "chondrocyte hypertrophy" evidence=ISS] [GO:0050680 "negative
            regulation of epithelial cell proliferation" evidence=ISS]
            [GO:0050679 "positive regulation of epithelial cell proliferation"
            evidence=ISS] [GO:0046533 "negative regulation of photoreceptor
            cell differentiation" evidence=ISS] [GO:0043066 "negative
            regulation of apoptotic process" evidence=ISS] [GO:0042981
            "regulation of apoptotic process" evidence=ISS] [GO:0042127
            "regulation of cell proliferation" evidence=ISS] [GO:0035019
            "somatic stem cell maintenance" evidence=ISS] [GO:0030916 "otic
            vesicle formation" evidence=ISS] [GO:0030858 "positive regulation
            of epithelial cell differentiation" evidence=ISS] [GO:0019100 "male
            germ-line sex determination" evidence=ISS] [GO:0008284 "positive
            regulation of cell proliferation" evidence=ISS] [GO:0003203
            "endocardial cushion morphogenesis" evidence=ISS] [GO:0003179
            "heart valve morphogenesis" evidence=ISS] [GO:0001708 "cell fate
            specification" evidence=ISS] [GO:0001837 "epithelial to mesenchymal
            transition" evidence=ISS] [GO:0001942 "hair follicle development"
            evidence=ISS] [GO:0001502 "cartilage condensation" evidence=ISS]
            [GO:0043234 "protein complex" evidence=ISS] [GO:0001046 "core
            promoter sequence-specific DNA binding" evidence=ISS] [GO:0032332
            "positive regulation of chondrocyte differentiation" evidence=ISS]
            [GO:0019933 "cAMP-mediated signaling" evidence=ISS] [GO:0006461
            "protein complex assembly" evidence=ISS] [GO:0001501 "skeletal
            system development" evidence=ISS] [GO:0035326 "enhancer binding"
            evidence=ISS] [GO:0001077 "RNA polymerase II core promoter proximal
            region sequence-specific DNA binding transcription factor activity
            involved in positive regulation of transcription" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0090190 "positive
            regulation of branching involved in ureteric bud morphogenesis"
            evidence=ISS] [GO:0090184 "positive regulation of kidney
            development" evidence=ISS] [GO:0072034 "renal vesicle induction"
            evidence=ISS] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0007165 "signal transduction"
            evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0001708
            GO:GO:0007173 GO:GO:0045892 GO:GO:0043066 GO:GO:0006461
            GO:GO:0019933 GO:GO:0070371 GO:GO:0014068 GO:GO:0007283
            GO:GO:0003682 GO:GO:0003705 GO:GO:0001077 GO:GO:0006338
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0004672 GO:GO:0071504 GO:GO:0001942 GO:GO:0032332
            GO:GO:0030279 GO:GO:0090090 GO:GO:0071260 GO:GO:0035019
            GO:GO:0001934 GO:GO:0090190 GO:GO:0071364 GO:GO:0043491
            GO:GO:0001502 GO:GO:0001837 GO:GO:0050680 GO:GO:0001158
            GO:GO:0030858 GO:GO:0010634 GO:GO:0016585 GO:GO:0006334
            GO:GO:0003413 GO:GO:0050679 GO:GO:0002053 GO:GO:0001046
            GO:GO:0003203 GO:GO:0032331 GO:GO:0045662 GO:GO:0060008
            GO:GO:0030916 GO:GO:2000020 GO:GO:0046533 GO:GO:0090103
            GO:GO:0010564 GO:GO:0019100 GO:GO:0003179 GO:GO:0070168
            GO:GO:0072289 eggNOG:NOG295709 HOGENOM:HOG000108876
            HOVERGEN:HBG002061 KO:K09270 InterPro:IPR022151 Pfam:PF12444
            GO:GO:2000741 GO:GO:0072034 GO:GO:0060221 OrthoDB:EOG4TXBRZ
            GO:GO:0003415 GO:GO:0060517 GO:GO:0060729 GO:GO:0002683
            GO:GO:0060784 EMBL:AY237827 RefSeq:NP_001002978.1 UniGene:Cfa.175
            ProteinModelPortal:Q7YRJ7 SMR:Q7YRJ7 STRING:Q7YRJ7 GeneID:403464
            KEGG:cfa:403464 CTD:6662 NextBio:20816981 Uniprot:Q7YRJ7
        Length = 513

 Score = 113 (44.8 bits), Expect = 8.4e-06, P = 8.4e-06
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ ++E EK PFVE AE+ +  + K+
Sbjct:   110 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKD 168

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   169 HPDYKYQ 175


>UNIPROTKB|F1LZ54 [details] [associations]
            symbol:F1LZ54 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 IPI:IPI00765905
            Ensembl:ENSRNOT00000045990 Uniprot:F1LZ54
        Length = 160

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 21/64 (32%), Positives = 38/64 (59%)

Query:    46 AFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             AFFV  + ++++ K+ HP++  + +   K   E+WK+MS  EK  F + A+  K+ Y + 
Sbjct:    17 AFFV--QAYQEEHKKKHPDSSVNFSEFSKKCSERWKTMSAKEKGKFEDVAKADKAHYERE 74

Query:   105 MQDY 108
             M+ Y
Sbjct:    75 MKTY 78


>UNIPROTKB|E2R0K1 [details] [associations]
            symbol:SOX8 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0072197 "ureter morphogenesis" evidence=ISS]
            [GO:0048709 "oligodendrocyte differentiation" evidence=ISS]
            [GO:0033690 "positive regulation of osteoblast proliferation"
            evidence=ISS] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0048484 "enteric nervous system
            development" evidence=ISS] [GO:0043066 "negative regulation of
            apoptotic process" evidence=ISS] [GO:0014015 "positive regulation
            of gliogenesis" evidence=ISS] [GO:0000979 "RNA polymerase II core
            promoter sequence-specific DNA binding" evidence=ISS] [GO:0001755
            "neural crest cell migration" evidence=ISS] [GO:0072289
            "metanephric nephron tubule formation" evidence=ISS] [GO:0061138
            "morphogenesis of a branching epithelium" evidence=ISS] [GO:0060612
            "adipose tissue development" evidence=ISS] [GO:0060221 "retinal rod
            cell differentiation" evidence=ISS] [GO:0060041 "retina development
            in camera-type eye" evidence=ISS] [GO:0060009 "Sertoli cell
            development" evidence=ISS] [GO:0045662 "negative regulation of
            myoblast differentiation" evidence=ISS] [GO:0045165 "cell fate
            commitment" evidence=ISS] [GO:0045444 "fat cell differentiation"
            evidence=ISS] [GO:0010817 "regulation of hormone levels"
            evidence=ISS] [GO:0008584 "male gonad development" evidence=ISS]
            [GO:0007422 "peripheral nervous system development" evidence=ISS]
            [GO:0007283 "spermatogenesis" evidence=ISS] [GO:0001701 "in utero
            embryonic development" evidence=ISS] [GO:0001649 "osteoblast
            differentiation" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0090190 "positive regulation of branching
            involved in ureteric bud morphogenesis" evidence=ISS] [GO:0090184
            "positive regulation of kidney development" evidence=ISS]
            [GO:0072034 "renal vesicle induction" evidence=ISS] [GO:0045892
            "negative regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0007165 "signal transduction" evidence=ISS] [GO:0060018
            "astrocyte fate commitment" evidence=IEA] [GO:0048469 "cell
            maturation" evidence=IEA] [GO:0046533 "negative regulation of
            photoreceptor cell differentiation" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0008134 "transcription factor binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            GO:GO:0005737 GO:GO:0045892 GO:GO:0007165 GO:GO:0045893
            GO:GO:0043066 GO:GO:0001755 GO:GO:0001701 GO:GO:0045944
            GO:GO:0007422 GO:GO:0060612 GO:GO:0003700 GO:GO:0007283
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0060009 GO:GO:0090190 GO:GO:0001649 GO:GO:0045444
            GO:GO:0000979 GO:GO:0048709 GO:GO:0048484 GO:GO:0010817
            GO:GO:0048469 GO:GO:0033690 GO:GO:0045662 GO:GO:0046533
            GO:GO:0060018 GO:GO:0014015 GO:GO:0072289 GO:GO:0072197
            GeneTree:ENSGT00670000097649 InterPro:IPR022151 Pfam:PF12444
            GO:GO:0061138 GO:GO:0072034 GO:GO:0060221 EMBL:AAEX03004665
            EMBL:AAEX03004666 Ensembl:ENSCAFT00000031157 Uniprot:E2R0K1
        Length = 462

 Score = 112 (44.5 bits), Expect = 9.3e-06, P = 9.3e-06
 Identities = 23/67 (34%), Positives = 39/67 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W  +SE EK PFVE AE+ +  + K+
Sbjct:   107 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWGLLSESEKRPFVEEAERLRVQHKKD 165

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   166 HPDYKYQ 172


>UNIPROTKB|Q6DFF5 [details] [associations]
            symbol:sox9-b "Transcription factor Sox-9-B" species:8355
            "Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0014029 "neural crest formation"
            evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
            [GO:0043049 "otic placode formation" evidence=ISS] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISS] [GO:0051216 "cartilage
            development" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0045944
            GO:GO:0006351 GO:GO:0019899 GO:GO:0007506 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0051216
            GO:GO:0043049 GO:GO:0014029 KO:K09270 InterPro:IPR022151
            Pfam:PF12444 HSSP:P48432 EMBL:AB439583 EMBL:BC076783
            RefSeq:NP_001087942.1 UniGene:Xl.28992 ProteinModelPortal:Q6DFF5
            SMR:Q6DFF5 GeneID:494585 KEGG:xla:494585 CTD:494585
            Xenbase:XB-GENE-1034775 Uniprot:Q6DFF5
        Length = 476

 Score = 112 (44.5 bits), Expect = 9.7e-06, P = 9.7e-06
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ ++E EK PFVE AE+ +  + K+
Sbjct:   110 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNEGEKRPFVEEAERLRVQHKKD 168

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   169 HPDYKYQ 175


>UNIPROTKB|Q6F2E7 [details] [associations]
            symbol:sox9 "Transcription factor Sox-9" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus"
            evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0014029
            "neural crest formation" evidence=ISS] [GO:0019899 "enzyme binding"
            evidence=ISS] [GO:0043049 "otic placode formation" evidence=ISS]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0051216
            "cartilage development" evidence=IEP] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
            GO:GO:0045944 GO:GO:0006351 GO:GO:0019899 GO:GO:0007506
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0051216 GO:GO:0043049 GO:GO:0014029 KO:K09270
            InterPro:IPR022151 Pfam:PF12444 HSSP:P48432 CTD:6662 EMBL:AC148478
            EMBL:CR855424 RefSeq:NP_001016853.1 UniGene:Str.15584
            ProteinModelPortal:Q6F2E7 SMR:Q6F2E7 STRING:Q6F2E7 GeneID:549607
            KEGG:xtr:549607 Xenbase:XB-GENE-1034769 eggNOG:NOG295090
            Uniprot:Q6F2E7
        Length = 482

 Score = 112 (44.5 bits), Expect = 9.9e-06, P = 9.9e-06
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ ++E EK PFVE AE+ +  + K+
Sbjct:   110 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNEGEKRPFVEEAERLRIQHKKD 168

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   169 HPDYKYQ 175


>UNIPROTKB|Q9BG89 [details] [associations]
            symbol:SOX9 "Transcription factor SOX-9" species:9598 "Pan
            troglodytes" [GO:0001046 "core promoter sequence-specific DNA
            binding" evidence=ISS] [GO:0001077 "RNA polymerase II core promoter
            proximal region sequence-specific DNA binding transcription factor
            activity involved in positive regulation of transcription"
            evidence=ISS] [GO:0001158 "enhancer sequence-specific DNA binding"
            evidence=ISS] [GO:0001501 "skeletal system development"
            evidence=ISS] [GO:0001502 "cartilage condensation" evidence=ISS]
            [GO:0001708 "cell fate specification" evidence=ISS] [GO:0001837
            "epithelial to mesenchymal transition" evidence=ISS] [GO:0001894
            "tissue homeostasis" evidence=ISS] [GO:0001934 "positive regulation
            of protein phosphorylation" evidence=ISS] [GO:0001942 "hair
            follicle development" evidence=ISS] [GO:0002053 "positive
            regulation of mesenchymal cell proliferation" evidence=ISS]
            [GO:0002683 "negative regulation of immune system process"
            evidence=ISS] [GO:0003170 "heart valve development" evidence=ISS]
            [GO:0003179 "heart valve morphogenesis" evidence=ISS] [GO:0003203
            "endocardial cushion morphogenesis" evidence=ISS] [GO:0003413
            "chondrocyte differentiation involved in endochondral bone
            morphogenesis" evidence=ISS] [GO:0003415 "chondrocyte hypertrophy"
            evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
            [GO:0003705 "RNA polymerase II distal enhancer sequence-specific
            DNA binding transcription factor activity" evidence=ISS]
            [GO:0004672 "protein kinase activity" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0006334 "nucleosome assembly"
            evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
            [GO:0006461 "protein complex assembly" evidence=ISS] [GO:0006468
            "protein phosphorylation" evidence=ISS] [GO:0007165 "signal
            transduction" evidence=ISS] [GO:0007173 "epidermal growth factor
            receptor signaling pathway" evidence=ISS] [GO:0007283
            "spermatogenesis" evidence=ISS] [GO:0008284 "positive regulation of
            cell proliferation" evidence=ISS] [GO:0010564 "regulation of cell
            cycle process" evidence=ISS] [GO:0010634 "positive regulation of
            epithelial cell migration" evidence=ISS] [GO:0014068 "positive
            regulation of phosphatidylinositol 3-kinase cascade" evidence=ISS]
            [GO:0019100 "male germ-line sex determination" evidence=ISS]
            [GO:0019933 "cAMP-mediated signaling" evidence=ISS] [GO:0030279
            "negative regulation of ossification" evidence=ISS] [GO:0030858
            "positive regulation of epithelial cell differentiation"
            evidence=ISS] [GO:0030916 "otic vesicle formation" evidence=ISS]
            [GO:0032331 "negative regulation of chondrocyte differentiation"
            evidence=ISS] [GO:0032332 "positive regulation of chondrocyte
            differentiation" evidence=ISS] [GO:0035019 "somatic stem cell
            maintenance" evidence=ISS] [GO:0035326 "enhancer binding"
            evidence=ISS] [GO:0042127 "regulation of cell proliferation"
            evidence=ISS] [GO:0042981 "regulation of apoptotic process"
            evidence=ISS] [GO:0043066 "negative regulation of apoptotic
            process" evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
            [GO:0043491 "protein kinase B signaling cascade" evidence=ISS]
            [GO:0045662 "negative regulation of myoblast differentiation"
            evidence=ISS] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0046533 "negative regulation of photoreceptor cell
            differentiation" evidence=ISS] [GO:0050679 "positive regulation of
            epithelial cell proliferation" evidence=ISS] [GO:0050680 "negative
            regulation of epithelial cell proliferation" evidence=ISS]
            [GO:0051216 "cartilage development" evidence=ISS] [GO:0060008
            "Sertoli cell differentiation" evidence=ISS] [GO:0060041 "retina
            development in camera-type eye" evidence=ISS] [GO:0060221 "retinal
            rod cell differentiation" evidence=ISS] [GO:0060517 "epithelial
            cell proliferation involved in prostatic bud elongation"
            evidence=ISS] [GO:0060729 "intestinal epithelial structure
            maintenance" evidence=ISS] [GO:0060784 "regulation of cell
            proliferation involved in tissue homeostasis" evidence=ISS]
            [GO:0061138 "morphogenesis of a branching epithelium" evidence=ISS]
            [GO:0070168 "negative regulation of biomineral tissue development"
            evidence=ISS] [GO:0070371 "ERK1 and ERK2 cascade" evidence=ISS]
            [GO:0071260 "cellular response to mechanical stimulus"
            evidence=ISS] [GO:0071364 "cellular response to epidermal growth
            factor stimulus" evidence=ISS] [GO:0071504 "cellular response to
            heparin" evidence=ISS] [GO:0072034 "renal vesicle induction"
            evidence=ISS] [GO:0072289 "metanephric nephron tubule formation"
            evidence=ISS] [GO:0090090 "negative regulation of canonical Wnt
            receptor signaling pathway" evidence=ISS] [GO:0090103 "cochlea
            morphogenesis" evidence=ISS] [GO:0090184 "positive regulation of
            kidney development" evidence=ISS] [GO:0090190 "positive regulation
            of branching involved in ureteric bud morphogenesis" evidence=ISS]
            [GO:2000020 "positive regulation of male gonad development"
            evidence=ISS] [GO:2000741 "positive regulation of mesenchymal stem
            cell differentiation" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0001708 GO:GO:0007173 GO:GO:0045892 GO:GO:0043066
            GO:GO:0006461 GO:GO:0019933 GO:GO:0070371 GO:GO:0014068
            GO:GO:0007283 GO:GO:0003682 GO:GO:0003705 GO:GO:0001077
            GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0004672 GO:GO:0071504 GO:GO:0001942
            GO:GO:0032332 GO:GO:0030279 GO:GO:0090090 GO:GO:0071260
            GO:GO:0035019 GO:GO:0001934 GO:GO:0090190 GO:GO:0071364
            GO:GO:0043491 GO:GO:0001502 GO:GO:0001837 GO:GO:0050680
            GO:GO:0001158 GO:GO:0030858 GO:GO:0010634 GO:GO:0016585
            GO:GO:0006334 GO:GO:0003413 GO:GO:0050679 GO:GO:0002053
            GO:GO:0001046 GO:GO:0003203 GO:GO:0032331 GO:GO:0045662
            GO:GO:0060008 GO:GO:0030916 GO:GO:2000020 GO:GO:0046533
            GO:GO:0090103 GO:GO:0010564 GO:GO:0019100 GO:GO:0003179
            GO:GO:0070168 GO:GO:0072289 eggNOG:NOG295709 HOGENOM:HOG000108876
            HOVERGEN:HBG002061 KO:K09270 InterPro:IPR022151 Pfam:PF12444
            GO:GO:2000741 GO:GO:0072034 GO:GO:0060221 OrthoDB:EOG4TXBRZ
            GO:GO:0003415 GO:GO:0060517 GO:GO:0060729 GO:GO:0002683
            GO:GO:0060784 CTD:6662 EMBL:AF322902 RefSeq:NP_001009029.1
            UniGene:Ptr.6522 ProteinModelPortal:Q9BG89 SMR:Q9BG89 STRING:Q9BG89
            GeneID:450101 KEGG:ptr:450101 InParanoid:Q9BG89 NextBio:20833065
            Uniprot:Q9BG89
        Length = 509

 Score = 112 (44.5 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ ++E EK PFVE AE+ +  + K+
Sbjct:   110 NAFMVWAQAARRKLGDQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKD 168

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   169 HPDYKYQ 175


>UNIPROTKB|A4IIJ8 [details] [associations]
            symbol:sox10 "Transcription factor Sox-10" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0014029 "neural crest
            formation" evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
            [GO:0030318 "melanocyte differentiation" evidence=ISS] [GO:0032183
            "SUMO binding" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0016055
            GO:GO:0003677 GO:GO:0001755 GO:GO:0006351 GO:GO:0019899
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0010628 GO:GO:0014044 GO:GO:0030318 GO:GO:0048709
            GO:GO:0050768 GO:GO:0048484 GO:GO:0048840 GO:GO:0048752
            GO:GO:0032183 GO:GO:0071600 GO:GO:0014029 CTD:6663 eggNOG:NOG295709
            GeneTree:ENSGT00670000097649 HOGENOM:HOG000108876 KO:K09270
            OrthoDB:EOG41C6WH InterPro:IPR022151 Pfam:PF12444 EMBL:BC136047
            RefSeq:NP_001093691.1 UniGene:Str.9225 ProteinModelPortal:A4IIJ8
            SMR:A4IIJ8 STRING:A4IIJ8 Ensembl:ENSXETT00000013902
            GeneID:100101700 KEGG:xtr:100101700 Xenbase:XB-GENE-480304
            OMA:STSHYTE Bgee:A4IIJ8 Uniprot:A4IIJ8
        Length = 436

 Score = 111 (44.1 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 20/67 (29%), Positives = 41/67 (61%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ ++E++K PF+E AE+ +  + K+
Sbjct:    95 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNENDKRPFIEEAERLRMQHKKD 153

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   154 HPDYKYQ 160


>UNIPROTKB|Q8AXX8 [details] [associations]
            symbol:sox10 "Transcription factor Sox-10" species:8355
            "Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0014029 "neural crest formation"
            evidence=IMP] [GO:0019899 "enzyme binding" evidence=IPI]
            [GO:0030318 "melanocyte differentiation" evidence=IMP] [GO:0032183
            "SUMO binding" evidence=IPI] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0016055
            GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0030318 GO:GO:0014029
            HSSP:P48431 CTD:6663 KO:K09270 InterPro:IPR022151 Pfam:PF12444
            EMBL:AY149116 EMBL:AY157667 EMBL:BC170062 RefSeq:NP_001082358.1
            UniGene:Xl.1588 ProteinModelPortal:Q8AXX8 SMR:Q8AXX8 GeneID:398422
            KEGG:xla:398422 Xenbase:XB-GENE-865362 Uniprot:Q8AXX8
        Length = 446

 Score = 111 (44.1 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 20/67 (29%), Positives = 41/67 (61%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ ++E++K PF+E AE+ +  + K+
Sbjct:   103 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNENDKRPFIEEAERLRMQHKKD 161

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   162 HPDYKYQ 168


>RGD|1585453 [details] [associations]
            symbol:LOC686146 "similar to High mobility group protein 1
            (HMG-1) (High mobility group protein B1) (Amphoterin)
            (Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] REFSEQ:XM_001066685 Ncbi:XP_001066685
        Length = 295

 Score = 108 (43.1 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 25/74 (33%), Positives = 36/74 (48%)

Query:    67 SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN-KQLADGVN-AAEENES 124
             S+  V K  GE W + + D+K P  ++A K K  Y K++  Y  K   D       + E 
Sbjct:    63 SIGDVAKKLGEMWNNTAMDDKQPCEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 122

Query:   125 DKSKSEVNDEDDEE 138
              K K E  D+DDE+
Sbjct:   123 SKKKKEGGDDDDED 136


>ZFIN|ZDB-GENE-001103-1 [details] [associations]
            symbol:sox9a "SRY-box containing gene 9a"
            species:7955 "Danio rerio" [GO:0048839 "inner ear development"
            evidence=IGI;IMP] [GO:0033339 "pectoral fin development"
            evidence=IMP] [GO:0051216 "cartilage development" evidence=IMP]
            [GO:0048708 "astrocyte differentiation" evidence=IMP] [GO:0048709
            "oligodendrocyte differentiation" evidence=IMP] [GO:0043049 "otic
            placode formation" evidence=IGI] [GO:0035118 "embryonic pectoral
            fin morphogenesis" evidence=IMP] [GO:0030916 "otic vesicle
            formation" evidence=IGI] [GO:0060536 "cartilage morphogenesis"
            evidence=IMP] [GO:0005737 "cytoplasm" evidence=IMP]
            InterPro:IPR009071 Pfam:PF00505 ZFIN:ZDB-GENE-001103-1
            GO:GO:0005737 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0048709 GO:GO:0035118 GO:GO:0043049
            GO:GO:0060536 GO:GO:0048708 GeneTree:ENSGT00670000097649
            HOGENOM:HOG000108876 HOVERGEN:HBG002061 KO:K09270
            InterPro:IPR022151 Pfam:PF12444 HSSP:P48432 OMA:GAGHVWM
            EMBL:CU074420 EMBL:AF277096 EMBL:AY090034 EMBL:AY090035
            IPI:IPI00507610 RefSeq:NP_571718.1 UniGene:Dr.80814 SMR:Q9DFH2
            STRING:Q9DFH2 Ensembl:ENSDART00000005676 GeneID:60641
            KEGG:dre:60641 CTD:60641 InParanoid:Q9DFH2 NextBio:20892427
            Uniprot:Q9DFH2
        Length = 462

 Score = 111 (44.1 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 26/91 (28%), Positives = 49/91 (53%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ ++E EK PFVE AE+ +  + K+
Sbjct:   112 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNEVEKRPFVEEAERLRVQHKKD 170

Query:   105 MQDYNKQ--LADGV-NAAEENESDKSKSEVN 132
               DY  Q      V N   E+E    ++ ++
Sbjct:   171 HPDYKYQPRRRKSVKNGQSESEDGSEQTHIS 201


>SGD|S000002157 [details] [associations]
            symbol:NHP6B "High-mobility group (HMG) protein, binds to and
            remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
            [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005694 "chromosome"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
            "DNA repair" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
            to DNA damage stimulus" evidence=IEA] [GO:0006338 "chromatin
            remodeling" evidence=IGI] [GO:0070898 "RNA polymerase III
            transcriptional preinitiation complex assembly" evidence=IGI;IDA]
            [GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=IGI]
            [GO:0043565 "sequence-specific DNA binding" evidence=IDA]
            [GO:0031491 "nucleosome binding" evidence=ISS] InterPro:IPR009071
            SGD:S000002157 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
            GO:GO:0006355 GO:GO:0043565 GO:GO:0006281 EMBL:BK006936
            GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006366
            EMBL:X78993 GO:GO:0031491 GeneTree:ENSGT00560000076898
            HOGENOM:HOG000197861 OMA:LANPNNK OrthoDB:EOG4S7P0P GO:GO:0070898
            EMBL:X15318 EMBL:Z35957 EMBL:Z35959 EMBL:AY558566 EMBL:EF123125
            PIR:S78076 RefSeq:NP_009647.2 ProteinModelPortal:P11633 SMR:P11633
            DIP:DIP-6748N IntAct:P11633 MINT:MINT-615533 STRING:P11633
            PaxDb:P11633 PeptideAtlas:P11633 EnsemblFungi:YBR089C-A
            GeneID:852386 KEGG:sce:YBR089C-A CYGD:YBR089c-a NextBio:971195
            Genevestigator:P11633 GermOnline:YBR089C-A Uniprot:P11633
        Length = 99

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 20/65 (30%), Positives = 35/65 (53%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SA+  F  E R   +  +P+  +   VG+  GE+WK+++ +EK P+  +A+  K  Y   
Sbjct:    32 SAYMFFANENRDIVRSENPD-VTFGQVGRILGERWKALTAEEKQPYESKAQADKKRYESE 90

Query:   105 MQDYN 109
              + YN
Sbjct:    91 KELYN 95


>UNIPROTKB|Q9W757 [details] [associations]
            symbol:SOX10 "Transcription factor SOX-10" species:9031
            "Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0000978
            "RNA polymerase II core promoter proximal region sequence-specific
            DNA binding" evidence=IEA] [GO:0000980 "RNA polymerase II distal
            enhancer sequence-specific DNA binding" evidence=IEA] [GO:0001701
            "in utero embryonic development" evidence=IEA] [GO:0001755 "neural
            crest cell migration" evidence=IEA] [GO:0002052 "positive
            regulation of neuroblast proliferation" evidence=IEA] [GO:0003682
            "chromatin binding" evidence=IEA] [GO:0003705 "RNA polymerase II
            distal enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0007422 "peripheral nervous system
            development" evidence=IEA] [GO:0014015 "positive regulation of
            gliogenesis" evidence=IEA] [GO:0030318 "melanocyte differentiation"
            evidence=IEA] [GO:0031315 "extrinsic to mitochondrial outer
            membrane" evidence=IEA] [GO:0042802 "identical protein binding"
            evidence=IEA] [GO:0043066 "negative regulation of apoptotic
            process" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0048469 "cell maturation" evidence=IEA] [GO:0048484 "enteric
            nervous system development" evidence=IEA] [GO:0048546 "digestive
            tract morphogenesis" evidence=IEA] [GO:0048589 "developmental
            growth" evidence=IEA] [GO:0048709 "oligodendrocyte differentiation"
            evidence=IEA] [GO:0090090 "negative regulation of canonical Wnt
            receptor signaling pathway" evidence=IEA] [GO:0060959 "cardiac
            neuron development" evidence=IEP] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0043066 GO:GO:0045944 GO:GO:0003682
            GO:GO:0003705 GO:GO:0000980 GO:GO:0000978 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0048589
            GO:GO:0090090 GO:GO:0030318 GO:GO:0031315 EMBL:AF152356
            EMBL:AJ245601 IPI:IPI00599244 RefSeq:NP_990123.1 UniGene:Gga.4428
            ProteinModelPortal:Q9W757 SMR:Q9W757 STRING:Q9W757
            Ensembl:ENSGALT00000020083 GeneID:395573 KEGG:gga:395573 CTD:6663
            eggNOG:NOG295709 GeneTree:ENSGT00670000097649 HOGENOM:HOG000108876
            HOVERGEN:HBG002061 InParanoid:Q9W757 KO:K09270 OMA:GPSMASD
            OrthoDB:EOG41C6WH NextBio:20815647 GO:GO:0060959 InterPro:IPR022151
            Pfam:PF12444 Uniprot:Q9W757
        Length = 461

 Score = 110 (43.8 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 20/67 (29%), Positives = 40/67 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ ++E +K PF+E AE+ +  + K+
Sbjct:   103 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKD 161

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   162 HPDYKYQ 168


>UNIPROTKB|P56693 [details] [associations]
            symbol:SOX10 "Transcription factor SOX-10" species:9606
            "Homo sapiens" [GO:0000978 "RNA polymerase II core promoter
            proximal region sequence-specific DNA binding" evidence=IEA]
            [GO:0000980 "RNA polymerase II distal enhancer sequence-specific
            DNA binding" evidence=IEA] [GO:0001701 "in utero embryonic
            development" evidence=IEA] [GO:0001755 "neural crest cell
            migration" evidence=IEA] [GO:0002052 "positive regulation of
            neuroblast proliferation" evidence=IEA] [GO:0003682 "chromatin
            binding" evidence=IEA] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0007422 "peripheral nervous system
            development" evidence=IEA] [GO:0008134 "transcription factor
            binding" evidence=IEA] [GO:0014015 "positive regulation of
            gliogenesis" evidence=IEA] [GO:0030318 "melanocyte differentiation"
            evidence=IEA] [GO:0031315 "extrinsic to mitochondrial outer
            membrane" evidence=IEA] [GO:0043066 "negative regulation of
            apoptotic process" evidence=IEA] [GO:0045892 "negative regulation
            of transcription, DNA-dependent" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0048469 "cell maturation" evidence=IEA]
            [GO:0048484 "enteric nervous system development" evidence=IEA]
            [GO:0048546 "digestive tract morphogenesis" evidence=IEA]
            [GO:0048589 "developmental growth" evidence=IEA] [GO:0048709
            "oligodendrocyte differentiation" evidence=IEA] [GO:0048863 "stem
            cell differentiation" evidence=IEA] [GO:0090090 "negative
            regulation of canonical Wnt receptor signaling pathway"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0003713
            "transcription coactivator activity" evidence=TAS] [GO:0006357
            "regulation of transcription from RNA polymerase II promoter"
            evidence=TAS] [GO:0009653 "anatomical structure morphogenesis"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0042802 "identical protein binding" evidence=IPI]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0043066
            GO:GO:0001755 GO:GO:0001701 GO:GO:0045944 GO:GO:0048863
            GO:GO:0007422 GO:GO:0006357 GO:GO:0003682 GO:GO:0003705
            GO:GO:0000980 GO:GO:0000978 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0003713 GO:GO:0048589
            GO:GO:0090090 GO:GO:0009653 GO:GO:0030318 GO:GO:0048709
            GO:GO:0031315 GO:GO:0048484 GO:GO:0002052 GO:GO:0048546
            GO:GO:0048469 EMBL:AL031587 Orphanet:897 GO:GO:0014015 Orphanet:895
            CTD:6663 eggNOG:NOG295709 HOGENOM:HOG000108876 HOVERGEN:HBG002061
            KO:K09270 InterPro:IPR022151 Pfam:PF12444 EMBL:AJ001183
            EMBL:CR456584 EMBL:BT020029 EMBL:BC002824 EMBL:BC007595
            IPI:IPI00010781 RefSeq:NP_008872.1 UniGene:Hs.376984
            ProteinModelPortal:P56693 SMR:P56693 IntAct:P56693
            MINT:MINT-1781695 STRING:P56693 PhosphoSite:P56693 DMDM:6175075
            PRIDE:P56693 DNASU:6663 Ensembl:ENST00000360880
            Ensembl:ENST00000396884 GeneID:6663 KEGG:hsa:6663 UCSC:uc003aun.1
            GeneCards:GC22M038366 HGNC:HGNC:11190 HPA:CAB003171 MIM:602229
            MIM:609136 MIM:611584 MIM:613266 neXtProt:NX_P56693 Orphanet:163746
            PharmGKB:PA36027 InParanoid:P56693 OMA:YYGHSSQ PhylomeDB:P56693
            GenomeRNAi:6663 NextBio:25977 ArrayExpress:P56693 Bgee:P56693
            CleanEx:HS_SOX10 Genevestigator:P56693 GermOnline:ENSG00000100146
            Uniprot:P56693
        Length = 466

 Score = 110 (43.8 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 20/67 (29%), Positives = 40/67 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ ++E +K PF+E AE+ +  + K+
Sbjct:   109 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKD 167

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   168 HPDYKYQ 174


>MGI|MGI:98358 [details] [associations]
            symbol:Sox10 "SRY-box containing gene 10" species:10090 "Mus
            musculus" [GO:0000978 "RNA polymerase II core promoter proximal
            region sequence-specific DNA binding" evidence=IDA] [GO:0000980
            "RNA polymerase II distal enhancer sequence-specific DNA binding"
            evidence=IDA] [GO:0000981 "sequence-specific DNA binding RNA
            polymerase II transcription factor activity" evidence=IDA]
            [GO:0001701 "in utero embryonic development" evidence=IGI]
            [GO:0001755 "neural crest cell migration" evidence=IMP] [GO:0002052
            "positive regulation of neuroblast proliferation" evidence=IMP]
            [GO:0003677 "DNA binding" evidence=ISO;IDA] [GO:0003682 "chromatin
            binding" evidence=IDA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IMP] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IDA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=ISO]
            [GO:0007422 "peripheral nervous system development" evidence=IGI]
            [GO:0008134 "transcription factor binding" evidence=ISO]
            [GO:0014015 "positive regulation of gliogenesis" evidence=IMP]
            [GO:0030154 "cell differentiation" evidence=IMP] [GO:0030318
            "melanocyte differentiation" evidence=IMP] [GO:0031315 "extrinsic
            to mitochondrial outer membrane" evidence=IDA] [GO:0042802
            "identical protein binding" evidence=ISO] [GO:0043066 "negative
            regulation of apoptotic process" evidence=IMP] [GO:0044212
            "transcription regulatory region DNA binding" evidence=IDA]
            [GO:0045892 "negative regulation of transcription, DNA-dependent"
            evidence=ISO] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=ISO;IDA;IMP] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IGI;IDA;IMP] [GO:0048469 "cell maturation"
            evidence=IGI;IMP] [GO:0048484 "enteric nervous system development"
            evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
            evidence=IGI;IMP] [GO:0048589 "developmental growth" evidence=IMP]
            [GO:0048709 "oligodendrocyte differentiation" evidence=IMP]
            [GO:0090090 "negative regulation of canonical Wnt receptor
            signaling pathway" evidence=IDA] InterPro:IPR009071 MGI:MGI:98358
            Pfam:PF00505 GO:GO:0005634 GO:GO:0043066 GO:GO:0001755
            GO:GO:0001701 GO:GO:0045944 GO:GO:0048863 GO:GO:0007422
            GO:GO:0003682 GO:GO:0003705 GO:GO:0000980 GO:GO:0000978
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0048589 GO:GO:0090090 GO:GO:0030318 GO:GO:0048709
            GO:GO:0031315 GO:GO:0048484 GO:GO:0002052 GO:GO:0048546
            GO:GO:0048469 GO:GO:0014015 CTD:6663 eggNOG:NOG295709
            GeneTree:ENSGT00670000097649 HOVERGEN:HBG002061 KO:K09270
            OrthoDB:EOG41C6WH InterPro:IPR022151 Pfam:PF12444 OMA:YYGHSSQ
            EMBL:AF017182 EMBL:AF047043 EMBL:U66141 EMBL:BC018551 EMBL:BC023356
            EMBL:BC025171 EMBL:Z18959 EMBL:U70441 IPI:IPI00929823 PIR:S30242
            RefSeq:NP_035567.1 UniGene:Mm.276739 ProteinModelPortal:Q04888
            SMR:Q04888 STRING:Q04888 PhosphoSite:Q04888 PaxDb:Q04888
            PRIDE:Q04888 Ensembl:ENSMUST00000040019 GeneID:20665 KEGG:mmu:20665
            InParanoid:Q04888 ChiTaRS:SOX10 NextBio:299123 Bgee:Q04888
            CleanEx:MM_SOX10 CleanEx:MM_SOX21 Genevestigator:Q04888
            GermOnline:ENSMUSG00000033006 Uniprot:Q04888
        Length = 466

 Score = 110 (43.8 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 20/67 (29%), Positives = 40/67 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ ++E +K PF+E AE+ +  + K+
Sbjct:   109 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKD 167

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   168 HPDYKYQ 174


>RGD|3735 [details] [associations]
            symbol:Sox10 "SRY (sex determining region Y)-box 10" species:10116
          "Rattus norvegicus" [GO:0000978 "RNA polymerase II core promoter
          proximal region sequence-specific DNA binding" evidence=IEA;ISO]
          [GO:0000980 "RNA polymerase II distal enhancer sequence-specific DNA
          binding" evidence=IEA;ISO] [GO:0000981 "sequence-specific DNA binding
          RNA polymerase II transcription factor activity" evidence=ISO]
          [GO:0001701 "in utero embryonic development" evidence=IEA;ISO]
          [GO:0001755 "neural crest cell migration" evidence=IEA;ISO]
          [GO:0002052 "positive regulation of neuroblast proliferation"
          evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=ISO;IDA]
          [GO:0003682 "chromatin binding" evidence=IEA;ISO] [GO:0003700
          "sequence-specific DNA binding transcription factor activity"
          evidence=ISO] [GO:0003705 "RNA polymerase II distal enhancer
          sequence-specific DNA binding transcription factor activity"
          evidence=IEA;ISO] [GO:0005515 "protein binding" evidence=IPI]
          [GO:0005634 "nucleus" evidence=ISO;ISS;IDA] [GO:0005737 "cytoplasm"
          evidence=ISO;IDA] [GO:0006355 "regulation of transcription,
          DNA-dependent" evidence=IDA] [GO:0007422 "peripheral nervous system
          development" evidence=IEA;ISO] [GO:0008134 "transcription factor
          binding" evidence=IDA;IPI] [GO:0014015 "positive regulation of
          gliogenesis" evidence=IEA;ISO] [GO:0030154 "cell differentiation"
          evidence=ISO] [GO:0030318 "melanocyte differentiation"
          evidence=IEA;ISO] [GO:0031315 "extrinsic to mitochondrial outer
          membrane" evidence=IEA;ISO] [GO:0042802 "identical protein binding"
          evidence=IEA;ISO] [GO:0043066 "negative regulation of apoptotic
          process" evidence=IEA;ISO] [GO:0044212 "transcription regulatory
          region DNA binding" evidence=ISO] [GO:0045892 "negative regulation of
          transcription, DNA-dependent" evidence=IDA] [GO:0045893 "positive
          regulation of transcription, DNA-dependent" evidence=ISO;IDA]
          [GO:0045944 "positive regulation of transcription from RNA polymerase
          II promoter" evidence=IEA;ISO] [GO:0048468 "cell development"
          evidence=NAS] [GO:0048469 "cell maturation" evidence=IEA;ISO]
          [GO:0048484 "enteric nervous system development" evidence=IEA;ISO]
          [GO:0048546 "digestive tract morphogenesis" evidence=IEA;ISO]
          [GO:0048589 "developmental growth" evidence=IEA;ISO] [GO:0048709
          "oligodendrocyte differentiation" evidence=IEA;ISO] [GO:0048863 "stem
          cell differentiation" evidence=IEP] [GO:0090090 "negative regulation
          of canonical Wnt receptor signaling pathway" evidence=IEA;ISO]
          InterPro:IPR009071 Pfam:PF00505 RGD:3735 GO:GO:0005634 GO:GO:0005737
          GO:GO:0045892 GO:GO:0045893 GO:GO:0043066 GO:GO:0003677 GO:GO:0001755
          GO:GO:0001701 GO:GO:0045944 GO:GO:0048863 GO:GO:0007422 GO:GO:0003682
          GO:GO:0003705 GO:GO:0000980 GO:GO:0000978 Gene3D:1.10.30.10
          SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0048589
          GO:GO:0090090 GO:GO:0008134 GO:GO:0030318 GO:GO:0048709 GO:GO:0048468
          GO:GO:0031315 GO:GO:0048484 GO:GO:0002052 GO:GO:0048546 GO:GO:0048469
          GO:GO:0014015 CTD:6663 eggNOG:NOG295709 GeneTree:ENSGT00670000097649
          HOGENOM:HOG000108876 HOVERGEN:HBG002061 KO:K09270 OrthoDB:EOG41C6WH
          InterPro:IPR022151 Pfam:PF12444 OMA:YYGHSSQ EMBL:AJ001029
          EMBL:BC062067 IPI:IPI00195985 RefSeq:NP_062066.1 UniGene:Rn.10883
          ProteinModelPortal:O55170 SMR:O55170 IntAct:O55170 MINT:MINT-3376332
          STRING:O55170 Ensembl:ENSRNOT00000015283 GeneID:29361 KEGG:rno:29361
          UCSC:RGD:3735 InParanoid:O55170 NextBio:608888 Genevestigator:O55170
          GermOnline:ENSRNOG00000011305 Uniprot:O55170
        Length = 466

 Score = 110 (43.8 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 20/67 (29%), Positives = 40/67 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ ++E +K PF+E AE+ +  + K+
Sbjct:   109 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKD 167

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   168 HPDYKYQ 174


>ZFIN|ZDB-GENE-011207-1 [details] [associations]
            symbol:sox10 "SRY-box containing gene 10"
            species:7955 "Danio rerio" [GO:0014044 "Schwann cell development"
            evidence=IMP] [GO:0048840 "otolith development" evidence=IMP]
            [GO:0048839 "inner ear development" evidence=IGI;IMP] [GO:0048752
            "semicircular canal morphogenesis" evidence=IMP] [GO:0010628
            "positive regulation of gene expression" evidence=IGI] [GO:0001755
            "neural crest cell migration" evidence=IMP] [GO:0048484 "enteric
            nervous system development" evidence=IMP] [GO:0010001 "glial cell
            differentiation" evidence=IGI] [GO:0071600 "otic vesicle
            morphogenesis" evidence=IMP] [GO:0030318 "melanocyte
            differentiation" evidence=IGI] [GO:0048709 "oligodendrocyte
            differentiation" evidence=IMP] [GO:0014037 "Schwann cell
            differentiation" evidence=IMP] [GO:0050768 "negative regulation of
            neurogenesis" evidence=IMP] InterPro:IPR009071 Pfam:PF00505
            ZFIN:ZDB-GENE-011207-1 GO:GO:0001755 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0010628
            GO:GO:0014044 GO:GO:0030318 GO:GO:0048709 GO:GO:0050768
            GO:GO:0048484 GO:GO:0048840 GO:GO:0048752 GO:GO:0071600 CTD:6663
            GeneTree:ENSGT00670000097649 HOGENOM:HOG000108876
            HOVERGEN:HBG002061 KO:K09270 OMA:GPSMASD InterPro:IPR022151
            Pfam:PF12444 HSSP:P48432 EMBL:CU695115 EMBL:BC163868 EMBL:BC163883
            EMBL:AF402677 IPI:IPI00512024 RefSeq:NP_571950.1 UniGene:Dr.83682
            SMR:Q90XD1 STRING:Q90XD1 Ensembl:ENSDART00000112979 GeneID:140616
            KEGG:dre:140616 NextBio:20797027 Uniprot:Q90XD1
        Length = 485

 Score = 110 (43.8 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 25/91 (27%), Positives = 50/91 (54%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  + +P+  + A + K  G+ W+ ++E +K PF+E AE+ +  + K+
Sbjct:   113 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNETDKRPFIEEAERLRKQHKKD 171

Query:   105 MQDYNKQLADGVNA--AEENESDK-SKSEVN 132
               +Y  Q     N      +E+D  S+ EV+
Sbjct:   172 YPEYKYQPRRRKNGKPGSSSEADAHSEGEVS 202


>RGD|2319567 [details] [associations]
            symbol:LOC100361707 "Ac2-008-like" species:10116 "Rattus
            norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 RGD:2319567 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:AC128270
            IPI:IPI00382302 Ensembl:ENSRNOT00000047163 ArrayExpress:F1LNG6
            Uniprot:F1LNG6
        Length = 219

 Score = 104 (41.7 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A+  K+ Y +
Sbjct:   142 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 201

Query:   104 NMQDY 108
              M+ Y
Sbjct:   202 EMKTY 206


>UNIPROTKB|G4MS97 [details] [associations]
            symbol:MGG_04489 "Non-histone chromosomal protein 6"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0043565 GO:GO:0006338 GO:GO:0008301 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CM001231
            GO:GO:0031491 GO:GO:0051123 GO:GO:0032301 GO:GO:0034724
            GO:GO:0070898 RefSeq:XP_003710967.1 ProteinModelPortal:G4MS97
            SMR:G4MS97 EnsemblFungi:MGG_04489T0 GeneID:2678075
            KEGG:mgr:MGG_04489 Uniprot:G4MS97
        Length = 101

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 21/64 (32%), Positives = 33/64 (51%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SA+  F  E R   +E +P   +   VGK  GE+WK++S+ ++AP+  +A   K  Y   
Sbjct:    29 SAYMFFANEQRDNVREENPG-VTFGQVGKILGERWKALSDKQRAPYDAKAAADKKRYEDE 87

Query:   105 MQDY 108
                Y
Sbjct:    88 KAAY 91


>FB|FBgn0038979 [details] [associations]
            symbol:CG7046 species:7227 "Drosophila melanogaster"
            [GO:0000785 "chromatin" evidence=ISS] [GO:0003677 "DNA binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 FlyBase:FBgn0038979 EMBL:AY070828
            HSSP:Q05783 ProteinModelPortal:Q8T957 SMR:Q8T957 STRING:Q8T957
            PRIDE:Q8T957 eggNOG:NOG253857 InParanoid:Q8T957 OrthoDB:EOG4MCVGR
            ArrayExpress:Q8T957 Bgee:Q8T957 Uniprot:Q8T957
        Length = 138

 Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 21/66 (31%), Positives = 37/66 (56%)

Query:    45 SAFFVFMEEF-RKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             SAF ++M    RK  +  HP+  SV  V    GE W++M+++ K  + E A K  ++Y +
Sbjct:    13 SAFMLWMNSTGRKNIRAEHPDF-SVQEVSVKGGEMWRAMADEHKIVWQESASKAMAEYKE 71

Query:   104 NMQDYN 109
              ++ +N
Sbjct:    72 KLEKWN 77


>WB|WBGene00001972 [details] [associations]
            symbol:hmg-1.2 species:6239 "Caenorhabditis elegans"
            [GO:0000003 "reproduction" evidence=IMP] [GO:0040010 "positive
            regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0040018 "positive regulation of multicellular organism growth"
            evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
            evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
            [GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
            [GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
            [GO:0007126 "meiosis" evidence=IMP] [GO:0001708 "cell fate
            specification" evidence=IMP] [GO:0016055 "Wnt receptor signaling
            pathway" evidence=IGI] [GO:0008406 "gonad development"
            evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0003677 "DNA binding"
            evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            GO:GO:0001708 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
            GO:GO:0040010 GO:GO:0008406 GO:GO:0016055 GO:GO:0003677
            GO:GO:0010171 GO:GO:0040018 eggNOG:COG5648 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:FO080618
            GO:GO:0040035 GO:GO:0040025 Pfam:PF09011 EMBL:AF056577 PIR:T43009
            RefSeq:NP_001022599.1 RefSeq:NP_001022600.1 RefSeq:NP_498375.1
            UniGene:Cel.10345 ProteinModelPortal:Q09390 SMR:Q09390
            IntAct:Q09390 STRING:Q09390 PaxDb:Q09390 PRIDE:Q09390
            EnsemblMetazoa:F47D12.4a.1 EnsemblMetazoa:F47D12.4a.2 GeneID:175890
            KEGG:cel:CELE_F47D12.4 UCSC:F47D12.4a.1 CTD:175890
            WormBase:F47D12.4a WormBase:F47D12.4b WormBase:F47D12.4c
            GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861 InParanoid:Q09390
            KO:K11295 OMA:GEDAMRK NextBio:890170 Uniprot:Q09390
        Length = 235

 Score = 103 (41.3 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 23/91 (25%), Positives = 47/91 (51%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SAFF + ++ R + +  HP+ K V  V +  G+ WK + ++ K  + ++A+  K  Y   
Sbjct:   140 SAFFFYSQDKRPEIQAGHPDWK-VGQVAQELGKMWKLVPQETKDMYEQKAQADKDRYADE 198

Query:   105 MQDYNKQLADGVNAAEENESDKSKSEVNDED 135
             M++Y  ++   ++  +  + D     V+ ED
Sbjct:   199 MRNYKAEMQK-MSGMDHYDDDNIHHVVHVED 228

 Score = 97 (39.2 bits), Expect = 0.00024, P = 0.00024
 Identities = 21/58 (36%), Positives = 32/58 (55%)

Query:    45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDY 101
             S +  F++   ++ K+ +PN N  V  + K   EKWK+M +DEK  F E A+K    Y
Sbjct:    50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERY 107


>UNIPROTKB|Q06945 [details] [associations]
            symbol:SOX4 "Transcription factor SOX-4" species:9606 "Homo
            sapiens" [GO:0031018 "endocrine pancreas development" evidence=IEA]
            [GO:0035019 "somatic stem cell maintenance" evidence=IEA]
            [GO:0032024 "positive regulation of insulin secretion"
            evidence=ISS] [GO:0071333 "cellular response to glucose stimulus"
            evidence=ISS] [GO:0001046 "core promoter sequence-specific DNA
            binding" evidence=IDA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IDA;IMP]
            [GO:0001071 "nucleic acid binding transcription factor activity"
            evidence=IMP] [GO:0042593 "glucose homeostasis" evidence=ISS]
            [GO:0090263 "positive regulation of canonical Wnt receptor
            signaling pathway" evidence=ISS] [GO:0045727 "positive regulation
            of translation" evidence=IMP] [GO:0042769 "DNA damage response,
            detection of DNA damage" evidence=IDA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=IDA;IMP]
            [GO:0001841 "neural tube formation" evidence=ISS] [GO:0003357
            "noradrenergic neuron differentiation" evidence=ISS] [GO:0014009
            "glial cell proliferation" evidence=ISS] [GO:0021522 "spinal cord
            motor neuron differentiation" evidence=ISS] [GO:0060174 "limb bud
            formation" evidence=ISS] [GO:0060563 "neuroepithelial cell
            differentiation" evidence=ISS] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0001077 "RNA polymerase II core promoter proximal
            region sequence-specific DNA binding transcription factor activity
            involved in positive regulation of transcription" evidence=IDA]
            [GO:0048485 "sympathetic nervous system development" evidence=ISS]
            [GO:0000976 "transcription regulatory region sequence-specific DNA
            binding" evidence=ISS] [GO:0001105 "RNA polymerase II transcription
            coactivator activity" evidence=ISS] [GO:0031397 "negative
            regulation of protein ubiquitination" evidence=IMP] [GO:0046826
            "negative regulation of protein export from nucleus" evidence=IMP]
            [GO:2000761 "positive regulation of N-terminal peptidyl-lysine
            acetylation" evidence=IDA] [GO:0006977 "DNA damage response, signal
            transduction by p53 class mediator resulting in cell cycle arrest"
            evidence=IMP] [GO:0043065 "positive regulation of apoptotic
            process" evidence=IMP] [GO:0008285 "negative regulation of cell
            proliferation" evidence=IMP] [GO:0031647 "regulation of protein
            stability" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0001501 "skeletal system development" evidence=ISS] [GO:0003211
            "cardiac ventricle formation" evidence=ISS] [GO:0021510 "spinal
            cord development" evidence=ISS] [GO:0021782 "glial cell
            development" evidence=ISS] [GO:0060548 "negative regulation of cell
            death" evidence=ISS] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IDA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IDA]
            [GO:0007507 "heart development" evidence=ISS] [GO:0030217 "T cell
            differentiation" evidence=ISS] [GO:0002328 "pro-B cell
            differentiation" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=IMP] [GO:0050821 "protein stabilization"
            evidence=IMP] [GO:0060070 "canonical Wnt receptor signaling
            pathway" evidence=ISS] [GO:0043066 "negative regulation of
            apoptotic process" evidence=IMP] [GO:0030177 "positive regulation
            of Wnt receptor signaling pathway" evidence=ISS] [GO:0003289
            "atrial septum primum morphogenesis" evidence=ISS] [GO:0003183
            "mitral valve morphogenesis" evidence=ISS] [GO:0060412 "ventricular
            septum morphogenesis" evidence=ISS] [GO:0003215 "cardiac right
            ventricle morphogenesis" evidence=ISS] [GO:0060993 "kidney
            morphogenesis" evidence=ISS] [GO:0035910 "ascending aorta
            morphogenesis" evidence=ISS] [GO:0005730 "nucleolus" evidence=IDA]
            [GO:0005739 "mitochondrion" evidence=IDA] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005739 GO:GO:0005634 GO:GO:0043066
            GO:GO:0008285 GO:GO:0050821 GO:GO:0006977 GO:GO:0071333
            GO:GO:0008284 GO:GO:0032024 GO:GO:0001077 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065
            GO:GO:0021522 GO:GO:0014009 GO:GO:0001501 GO:GO:0003289
            GO:GO:0003183 GO:GO:0035019 GO:GO:0060993 GO:GO:0031018
            GO:GO:0045727 GO:GO:0090263 GO:GO:0001105 GO:GO:0048485
            GO:GO:0060070 GO:GO:0031397 GO:GO:0060563 GO:GO:0046826
            GO:GO:0001046 GO:GO:0030217 GO:GO:0001841 GO:GO:0060412
            GO:GO:0060174 GO:GO:0042769 GO:GO:0002328 GO:GO:0003215
            GO:GO:0021782 GO:GO:0003357 GO:GO:0035910 GO:GO:0003211
            HOVERGEN:HBG005040 KO:K09268 InterPro:IPR017386 PIRSF:PIRSF038098
            eggNOG:NOG130659 HOGENOM:HOG000231874 OrthoDB:EOG41VK47 EMBL:X70683
            EMBL:AL136179 EMBL:BC072668 EMBL:X65661 IPI:IPI00001617 PIR:I38240
            RefSeq:NP_003098.1 UniGene:Hs.643910 ProteinModelPortal:Q06945
            SMR:Q06945 DIP:DIP-58650N STRING:Q06945 PhosphoSite:Q06945
            DMDM:548952 PaxDb:Q06945 PRIDE:Q06945 DNASU:6659
            Ensembl:ENST00000244745 Ensembl:ENST00000543472 GeneID:6659
            KEGG:hsa:6659 UCSC:uc003ndi.3 CTD:6659 GeneCards:GC06P021593
            HGNC:HGNC:11200 HPA:HPA029901 MIM:184430 neXtProt:NX_Q06945
            PharmGKB:PA36037 InParanoid:Q06945 OMA:AGCSPDG ChiTaRS:SOX4
            GenomeRNAi:6659 NextBio:25959 Bgee:Q06945 CleanEx:HS_SOX4
            Genevestigator:Q06945 GermOnline:ENSG00000124766 GO:GO:2000761
            Uniprot:Q06945
        Length = 474

 Score = 108 (43.1 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 26/100 (26%), Positives = 51/100 (51%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  E  P+  + A + K  G++WK + + +K PF+  AE+ +  +  +
Sbjct:    64 NAFMVWSQIERRKIMEQSPDMHN-AEISKRLGKRWKLLKDSDKIPFIREAERLRLKHMAD 122

Query:   105 MQDYNKQLADGVNAAEENESDKS--KSEVNDEDDEEG-SG 141
               DY  +    V +   N S  +   S+  ++ D+ G SG
Sbjct:   123 YPDYKYRPRKKVKSGNANSSSSAAASSKPGEKGDKVGGSG 162


>UNIPROTKB|F1RUF9 [details] [associations]
            symbol:SOX4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0060174 "limb bud formation" evidence=ISS] [GO:0008284
            "positive regulation of cell proliferation" evidence=ISS]
            [GO:0002328 "pro-B cell differentiation" evidence=ISS] [GO:0060563
            "neuroepithelial cell differentiation" evidence=ISS] [GO:0021522
            "spinal cord motor neuron differentiation" evidence=ISS]
            [GO:0014009 "glial cell proliferation" evidence=ISS] [GO:0003357
            "noradrenergic neuron differentiation" evidence=ISS] [GO:0001841
            "neural tube formation" evidence=ISS] [GO:0005739 "mitochondrion"
            evidence=ISS] [GO:0046826 "negative regulation of protein export
            from nucleus" evidence=ISS] [GO:0031647 "regulation of protein
            stability" evidence=ISS] [GO:2000761 "positive regulation of
            N-terminal peptidyl-lysine acetylation" evidence=ISS] [GO:0006977
            "DNA damage response, signal transduction by p53 class mediator
            resulting in cell cycle arrest" evidence=ISS] [GO:0060070
            "canonical Wnt receptor signaling pathway" evidence=ISS]
            [GO:0007507 "heart development" evidence=ISS] [GO:0030217 "T cell
            differentiation" evidence=ISS] [GO:0090263 "positive regulation of
            canonical Wnt receptor signaling pathway" evidence=ISS] [GO:0042593
            "glucose homeostasis" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISS] [GO:0001046 "core
            promoter sequence-specific DNA binding" evidence=ISS] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0060548 "negative regulation of cell
            death" evidence=ISS] [GO:0021782 "glial cell development"
            evidence=ISS] [GO:0021510 "spinal cord development" evidence=ISS]
            [GO:0003211 "cardiac ventricle formation" evidence=ISS] [GO:0001501
            "skeletal system development" evidence=ISS] [GO:0045727 "positive
            regulation of translation" evidence=ISS] [GO:0042769 "DNA damage
            response, detection of DNA damage" evidence=ISS] [GO:0031397
            "negative regulation of protein ubiquitination" evidence=ISS]
            [GO:0008285 "negative regulation of cell proliferation"
            evidence=ISS] [GO:0001105 "RNA polymerase II transcription
            coactivator activity" evidence=ISS] [GO:0001077 "RNA polymerase II
            core promoter proximal region sequence-specific DNA binding
            transcription factor activity involved in positive regulation of
            transcription" evidence=ISS] [GO:0000976 "transcription regulatory
            region sequence-specific DNA binding" evidence=ISS] [GO:0048485
            "sympathetic nervous system development" evidence=ISS] [GO:0043066
            "negative regulation of apoptotic process" evidence=ISS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0001071 "nucleic acid binding transcription
            factor activity" evidence=ISS] [GO:0050821 "protein stabilization"
            evidence=ISS] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0043065 "positive regulation of
            apoptotic process" evidence=ISS] [GO:0030177 "positive regulation
            of Wnt receptor signaling pathway" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0071333 "cellular response to glucose
            stimulus" evidence=ISS] [GO:0032024 "positive regulation of insulin
            secretion" evidence=ISS] [GO:0060993 "kidney morphogenesis"
            evidence=IEA] [GO:0060412 "ventricular septum morphogenesis"
            evidence=IEA] [GO:0035910 "ascending aorta morphogenesis"
            evidence=IEA] [GO:0035019 "somatic stem cell maintenance"
            evidence=IEA] [GO:0031018 "endocrine pancreas development"
            evidence=IEA] [GO:0003289 "atrial septum primum morphogenesis"
            evidence=IEA] [GO:0003215 "cardiac right ventricle morphogenesis"
            evidence=IEA] [GO:0003183 "mitral valve morphogenesis"
            evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005739
            GO:GO:0005634 GO:GO:0043066 GO:GO:0008285 GO:GO:0050821
            GO:GO:0006977 GO:GO:0071333 GO:GO:0008284 GO:GO:0032024
            GO:GO:0001077 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0043065 GO:GO:0021522 GO:GO:0014009
            GO:GO:0001501 GO:GO:0003289 GO:GO:0003183 GO:GO:0035019
            GO:GO:0060993 GO:GO:0031018 GO:GO:0045727 GO:GO:0090263
            GO:GO:0001105 GO:GO:0048485 GO:GO:0060070 GO:GO:0031397
            GO:GO:0060563 GO:GO:0046826 GO:GO:0001046 GO:GO:0030217
            GO:GO:0001841 GO:GO:0060412 GO:GO:0060174 GO:GO:0042769
            GO:GO:0002328 GO:GO:0003215 GO:GO:0021782 GO:GO:0003357
            GO:GO:0035910 GO:GO:0003211 KO:K09268 InterPro:IPR017386
            PIRSF:PIRSF038098 GeneTree:ENSGT00690000101789 OMA:AGCSPDG
            GO:GO:2000761 EMBL:CT757489 RefSeq:XP_003128248.1
            Ensembl:ENSSSCT00000001176 GeneID:100512542 KEGG:ssc:100512542
            Uniprot:F1RUF9
        Length = 477

 Score = 108 (43.1 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 26/100 (26%), Positives = 51/100 (51%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  E  P+  + A + K  G++WK + + +K PF+  AE+ +  +  +
Sbjct:    64 NAFMVWSQIERRKIMEQSPDMHN-AEISKRLGKRWKLLKDSDKIPFIREAERLRLKHMAD 122

Query:   105 MQDYNKQLADGVNAAEENESDKS--KSEVNDEDDEEG-SG 141
               DY  +    V +   N S  +   S+  ++ D+ G SG
Sbjct:   123 YPDYKYRPRKKVKSGNANSSSSTAASSKPGEKGDKVGGSG 162


>FB|FBgn0010278 [details] [associations]
            symbol:Ssrp "Structure specific recognition protein"
            species:7227 "Drosophila melanogaster" [GO:0000217 "DNA secondary
            structure binding" evidence=ISS] [GO:0003697 "single-stranded DNA
            binding" evidence=ISS;NAS] [GO:0005634 "nucleus" evidence=ISS;NAS]
            [GO:0003727 "single-stranded RNA binding" evidence=NAS] [GO:0005730
            "nucleolus" evidence=NAS] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0001672 "regulation of chromatin assembly or
            disassembly" evidence=IMP] [GO:0035101 "FACT complex"
            evidence=IDA;TAS] [GO:0043621 "protein self-association"
            evidence=IDA] [GO:0031492 "nucleosomal DNA binding" evidence=IDA]
            [GO:0051101 "regulation of DNA binding" evidence=IMP] [GO:0022008
            "neurogenesis" evidence=IMP] InterPro:IPR009071 InterPro:IPR000969
            PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 EMBL:AE013599
            GO:GO:0005694 GO:GO:0022008 GO:GO:0006355 Gene3D:2.30.29.30
            InterPro:IPR011993 GO:GO:0006260 GO:GO:0006281 GO:GO:0006351
            GO:GO:0003723 GO:GO:0043621 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0051101 GO:GO:0031492
            GeneTree:ENSGT00700000104547 GO:GO:0001672 GO:GO:0035101
            InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
            InterPro:IPR024954 OMA:PVEVKKG EMBL:L08825 EMBL:X68408
            EMBL:BT004831 PIR:A48217 PIR:S33688 RefSeq:NP_523830.2
            UniGene:Dm.3383 PDB:1WXL PDBsum:1WXL ProteinModelPortal:Q05344
            SMR:Q05344 IntAct:Q05344 STRING:Q05344 PaxDb:Q05344
            EnsemblMetazoa:FBtr0072242 GeneID:37767 KEGG:dme:Dmel_CG4817
            CTD:37767 FlyBase:FBgn0010278 InParanoid:Q05344 OrthoDB:EOG40CFZ2
            PhylomeDB:Q05344 EvolutionaryTrace:Q05344 GenomeRNAi:37767
            NextBio:805310 Bgee:Q05344 GermOnline:CG4817 Uniprot:Q05344
        Length = 723

 Score = 110 (43.8 bits), Expect = 2.8e-05, P = 2.8e-05
 Identities = 34/144 (23%), Positives = 58/144 (40%)

Query:     3 GGRSKADAVGTDSKLKSKGARAGKRTXXXXXXXXXXXX-XXXXSAFFVFMEEFRKQFKEA 61
             G + K +      + K K  +  +RT                 +AF +++ + R+  K  
Sbjct:   517 GAKKKKEKKSEKKEKKEKKHKEKERTKKPSKKKKDSGKPKRATTAFMLWLNDTRESIKRE 576

Query:    62 HPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLA-DGVNAAE 120
             +P  K V  + K  GE WK + +  K+ + + A K K  Y+  M++Y  +   D  N   
Sbjct:   577 NPGIK-VTEIAKKGGEMWKELKD--KSKWEDAAAKDKQRYHDEMRNYKPEAGGDSDNEKG 633

Query:   121 ENESDKSKSEVNDEDDEEGSGEVF 144
                S K K+E +       SG  F
Sbjct:   634 GKSSKKRKTEPSPSKKANTSGSGF 657


>UNIPROTKB|B3DLD3 [details] [associations]
            symbol:sox18 "Transcription factor Sox-18" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus" evidence=ISS]
            [GO:0007507 "heart development" evidence=ISS] [GO:0030178 "negative
            regulation of Wnt receptor signaling pathway" evidence=ISS]
            [GO:0043565 "sequence-specific DNA binding" evidence=ISS]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0007507
            GO:GO:0006355 GO:GO:0043565 GO:GO:0006351 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0030178
            InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516 KO:K09270 CTD:54345
            EMBL:BC167402 RefSeq:NP_001123409.1 UniGene:Str.78926
            GeneID:100170185 KEGG:xtr:100170185 Xenbase:XB-GENE-483233
            Uniprot:B3DLD3
        Length = 362

 Score = 106 (42.4 bits), Expect = 2.8e-05, P = 2.8e-05
 Identities = 21/64 (32%), Positives = 40/64 (62%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ ++ RK+  + +P+  + A + K  G+ WK++S  EK PFVE AE+ +  + ++
Sbjct:    73 NAFMVWAKDERKRLAQQNPDLHN-AVLSKMLGQSWKNLSSAEKRPFVEEAERLRVQHLQD 131

Query:   105 MQDY 108
               +Y
Sbjct:   132 HPNY 135


>TAIR|locus:2010587 [details] [associations]
            symbol:AT1G04880 species:3702 "Arabidopsis thaliana"
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=TAS] [GO:0006333 "chromatin assembly or
            disassembly" evidence=RCA] InterPro:IPR009071 InterPro:IPR001606
            Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 Pfam:PF00505
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
            GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC004809 Gene3D:1.10.150.60
            SUPFAM:SSF46774 HSSP:P07155 HOGENOM:HOG000243289
            ProtClustDB:CLSN2681954 EMBL:BT020255 EMBL:BT020442 EMBL:AB493433
            IPI:IPI00523331 PIR:B86182 RefSeq:NP_171980.1 UniGene:At.42427
            ProteinModelPortal:Q9MAT6 SMR:Q9MAT6 PaxDb:Q9MAT6 PRIDE:Q9MAT6
            EnsemblPlants:AT1G04880.1 GeneID:839388 KEGG:ath:AT1G04880
            TAIR:At1g04880 eggNOG:NOG236327 InParanoid:Q9MAT6 OMA:EMEDYRE
            PhylomeDB:Q9MAT6 Genevestigator:Q9MAT6 Uniprot:Q9MAT6
        Length = 448

 Score = 107 (42.7 bits), Expect = 3.1e-05, P = 3.1e-05
 Identities = 34/109 (31%), Positives = 50/109 (45%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             S +  F  E   + K  HP       + +  GE W  ++EDEK  +  +A + K  Y   
Sbjct:   268 SGYNFFFAEQHARLKPLHPGKDR--DISRMIGELWNKLNEDEKLIYQGKAMEDKERYRTE 325

Query:   105 MQDYNKQLADGV---NAA-------EEN----ESDKSKSEVNDEDDEEG 139
             M+DY ++  +G    NA        E+N    E+D    EV +EDDEEG
Sbjct:   326 MEDYREKKKNGQLISNAVPLQQRLPEQNVDMAEADLPIDEV-EEDDEEG 373


>WB|WBGene00004771 [details] [associations]
            symbol:sem-2 species:6239 "Caenorhabditis elegans"
            [GO:0005634 "nucleus" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 EMBL:FO080144 eggNOG:NOG130659
            GeneTree:ENSGT00690000101789 HSSP:P35710 RefSeq:NP_740846.1
            ProteinModelPortal:Q8T3B9 SMR:Q8T3B9 EnsemblMetazoa:C32E12.5.1
            EnsemblMetazoa:C32E12.5.2 GeneID:172162 KEGG:cel:CELE_C32E12.5
            UCSC:C32E12.5.1 CTD:172162 WormBase:C32E12.5 HOGENOM:HOG000019701
            InParanoid:Q8T3B9 OMA:PSEFGHA NextBio:874275 Uniprot:Q8T3B9
        Length = 404

 Score = 106 (42.4 bits), Expect = 3.4e-05, P = 3.4e-05
 Identities = 21/64 (32%), Positives = 39/64 (60%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  E  P+  + A + K  G +W+S++++EKAPFV  AE+ +  + + 
Sbjct:    98 NAFMVWSQMERRKICEHQPDMHN-AEISKQLGSRWRSLTDEEKAPFVAEAERLRVCHMQE 156

Query:   105 MQDY 108
               DY
Sbjct:   157 YPDY 160


>FB|FBgn0038978 [details] [associations]
            symbol:CG7045 species:7227 "Drosophila melanogaster"
            [GO:0005634 "nucleus" evidence=ISS] [GO:0003677 "DNA binding"
            evidence=ISS] [GO:0000785 "chromatin" evidence=ISS]
            InterPro:IPR009071 Pfam:PF00505 EMBL:AE014297 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GeneTree:ENSGT00700000104547 HSSP:Q05783 OrthoDB:EOG4MCVGR
            RefSeq:NP_651055.1 UniGene:Dm.1280 ProteinModelPortal:Q9VCZ5
            SMR:Q9VCZ5 MINT:MINT-1649734 STRING:Q9VCZ5 PRIDE:Q9VCZ5
            EnsemblMetazoa:FBtr0084258 GeneID:42650 KEGG:dme:Dmel_CG7045
            UCSC:CG7045-RA FlyBase:FBgn0038978 InParanoid:Q9VCZ5
            PhylomeDB:Q9VCZ5 GenomeRNAi:42650 NextBio:829878
            ArrayExpress:Q9VCZ5 Bgee:Q9VCZ5 Uniprot:Q9VCZ5
        Length = 126

 Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 21/66 (31%), Positives = 37/66 (56%)

Query:    45 SAFFVFMEEF-RKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
             SAF ++M    RK  K  HP+  SV  V    GE W++M++++K  + E A    ++Y +
Sbjct:    13 SAFMLWMNSTGRKHIKAEHPDF-SVQEVSVKGGEMWRAMADEDKIVWQESATTAMAEYKE 71

Query:   104 NMQDYN 109
              ++ +N
Sbjct:    72 KLKQWN 77


>DICTYBASE|DDB_G0282427 [details] [associations]
            symbol:DDB_G0282427 "HMG1/2 (high mobility group)
            box-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
            binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR009071
            InterPro:IPR001965 InterPro:IPR019787 Pfam:PF00628 PROSITE:PS50016
            SMART:SM00184 SMART:SM00249 dictyBase:DDB_G0282427 Pfam:PF00505
            EMBL:AAFI02000047 GO:GO:0046872 GO:GO:0008270 eggNOG:COG5648
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
            SUPFAM:SSF57903 RefSeq:XP_640043.1 ProteinModelPortal:Q54SJ6
            EnsemblProtists:DDB0220651 GeneID:8623570 KEGG:ddi:DDB_G0282427
            InParanoid:Q54SJ6 OMA:YMNINRE Uniprot:Q54SJ6
        Length = 795

 Score = 98 (39.6 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
 Identities = 21/74 (28%), Positives = 40/74 (54%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             SA+F +M   R+  K  +P+   ++ + K  G KWK ++ D++  + E+A + K  Y   
Sbjct:   332 SAYFHYMNINREDEKRMNPD-VPLSDISKILGAKWKQLTPDDQKEYYEKAREDKIRYENE 390

Query:   105 MQDYNKQLADGVNA 118
             M  YN++  +  N+
Sbjct:   391 MVLYNQKCKEVENS 404

 Score = 34 (17.0 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
 Identities = 7/23 (30%), Positives = 11/23 (47%)

Query:   116 VNAAEENESDKSKSEVNDEDDEE 138
             +   EE    KS  +   +DDE+
Sbjct:   767 IGVVEEKTPKKSLGKRKKKDDED 789


>MGI|MGI:98363 [details] [associations]
            symbol:Sox15 "SRY-box containing gene 15" species:10090 "Mus
            musculus" [GO:0000122 "negative regulation of transcription from
            RNA polymerase II promoter" evidence=IDA] [GO:0003677 "DNA binding"
            evidence=IGI;IDA] [GO:0003682 "chromatin binding" evidence=IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0030154
            "cell differentiation" evidence=IGI] [GO:0043403 "skeletal muscle
            tissue regeneration" evidence=IMP] [GO:0045843 "negative regulation
            of striated muscle tissue development" evidence=IDA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IGI;IDA] [GO:0048627 "myoblast development"
            evidence=IMP] InterPro:IPR009071 MGI:MGI:98363 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0045944
            GO:GO:0003682 GO:GO:0045843 GO:GO:0000122 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0014718
            GO:GO:0070318 GO:GO:0043403 GO:GO:2000288 GO:GO:0048627 CTD:6665
            eggNOG:NOG311451 HOVERGEN:HBG055512 KO:K09271 OMA:PQSDPRL
            OrthoDB:EOG40K80Q EMBL:AB014474 EMBL:AF182945 EMBL:AB039214
            EMBL:AB039215 EMBL:AB039216 EMBL:AB039217 EMBL:AB039218
            EMBL:AB039219 EMBL:AB039220 EMBL:AB039221 EMBL:AB039222 EMBL:U70443
            EMBL:X70909 EMBL:X98369 IPI:IPI00118219 PIR:S33715
            RefSeq:NP_033261.1 UniGene:Mm.347499 ProteinModelPortal:P43267
            SMR:P43267 MINT:MINT-4788454 STRING:P43267 PhosphoSite:P43267
            PRIDE:P43267 Ensembl:ENSMUST00000047373 GeneID:20670 KEGG:mmu:20670
            InParanoid:P43267 NextBio:299147 Bgee:P43267 CleanEx:MM_SOX15
            Genevestigator:P43267 GermOnline:ENSMUSG00000041287 Uniprot:P43267
        Length = 231

 Score = 101 (40.6 bits), Expect = 4.1e-05, P = 4.1e-05
 Identities = 19/64 (29%), Positives = 38/64 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    R+Q  + +P   + + + K  G +WK + ++EK PFVE A++ ++ + ++
Sbjct:    52 NAFMVWSSVQRRQMAQQNPKMHN-SEISKRLGAQWKLLGDEEKRPFVEEAKRLRARHLRD 110

Query:   105 MQDY 108
               DY
Sbjct:   111 YPDY 114


>WB|WBGene00004950 [details] [associations]
            symbol:sox-3 species:6239 "Caenorhabditis elegans"
            [GO:0003690 "double-stranded DNA binding" evidence=ISS]
            InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0003690
            GeneTree:ENSGT00690000101940 EMBL:Z69792 HSSP:P48432
            eggNOG:NOG302715 KO:K09267 PIR:T22022 RefSeq:NP_510439.1
            UniGene:Cel.1041 ProteinModelPortal:Q20201 SMR:Q20201
            EnsemblMetazoa:F40E10.2 GeneID:185534 KEGG:cel:CELE_F40E10.2
            UCSC:F40E10.2 CTD:185534 WormBase:F40E10.2 HOGENOM:HOG000018340
            InParanoid:Q20201 OMA:KTSYDED NextBio:928610 Uniprot:Q20201
        Length = 212

 Score = 99 (39.9 bits), Expect = 5.5e-05, P = 5.5e-05
 Identities = 19/64 (29%), Positives = 37/64 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    R++  + +P   + + + K  G +WK +SE EK PF++ A++ ++ + K 
Sbjct:    53 NAFMVWSRGQRRKMAQDNPKMHN-SEISKRLGAEWKQLSEQEKRPFIDEAKRLRALHMKE 111

Query:   105 MQDY 108
               DY
Sbjct:   112 HPDY 115


>ZFIN|ZDB-GENE-001103-2 [details] [associations]
            symbol:sox9b "SRY-box containing gene 9b"
            species:7955 "Danio rerio" [GO:0048839 "inner ear development"
            evidence=IGI;IMP] [GO:0043049 "otic placode formation"
            evidence=IGI;IMP] [GO:0060041 "retina development in camera-type
            eye" evidence=IMP] [GO:0031016 "pancreas development" evidence=IMP]
            [GO:0051216 "cartilage development" evidence=IMP] [GO:0035118
            "embryonic pectoral fin morphogenesis" evidence=IMP] [GO:0030318
            "melanocyte differentiation" evidence=IMP] [GO:0030916 "otic
            vesicle formation" evidence=IGI] [GO:0050935 "iridophore
            differentiation" evidence=IMP] InterPro:IPR009071 Pfam:PF00505
            ZFIN:ZDB-GENE-001103-2 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0060041 GO:GO:0051216
            GO:GO:0031016 GO:GO:0030318 GO:GO:0035118 GO:GO:0043049
            GO:GO:0050935 GeneTree:ENSGT00670000097649 InterPro:IPR022151
            Pfam:PF12444 EMBL:CU855796 IPI:IPI00994467
            Ensembl:ENSDART00000124464 ArrayExpress:F1QDZ3 Bgee:F1QDZ3
            Uniprot:F1QDZ3
        Length = 408

 Score = 104 (41.7 bits), Expect = 5.6e-05, P = 5.6e-05
 Identities = 24/91 (26%), Positives = 48/91 (52%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKW-KSMSEDEKAPFVERAEKRKSDYNK 103
             +AF V+ +  R++  + +P+  + A + K  G+ W + ++E EK PFVE AE+ +  + K
Sbjct:    96 NAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWSRLLNEGEKRPFVEEAERLRVQHKK 154

Query:   104 NMQDYNKQ--LADGVNAAEENESDKSKSEVN 132
             +  DY  Q      V +      D  +++++
Sbjct:   155 DHPDYKYQPRRRKSVKSGSAESEDGEQTQIS 185


>UNIPROTKB|Q90ZH7 [details] [associations]
            symbol:sox18-b "Transcription factor Sox-18B" species:8355
            "Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0007507
            "heart development" evidence=IMP] [GO:0030178 "negative regulation
            of Wnt receptor signaling pathway" evidence=IMP] [GO:0043565
            "sequence-specific DNA binding" evidence=IDA] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005634 GO:GO:0007507 GO:GO:0006355
            GO:GO:0043565 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0030178 HSSP:P48431
            InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516 KO:K09270
            EMBL:AB052693 EMBL:BC072123 RefSeq:NP_001082104.1 UniGene:Xl.11959
            ProteinModelPortal:Q90ZH7 SMR:Q90ZH7 GeneID:398227 KEGG:xla:398227
            CTD:398227 Xenbase:XB-GENE-6251810 Uniprot:Q90ZH7
        Length = 361

 Score = 103 (41.3 bits), Expect = 6.0e-05, P = 6.0e-05
 Identities = 20/64 (31%), Positives = 40/64 (62%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ ++ RK+  + +P+  + A + K  G+ WK+++  EK PFVE AE+ +  + ++
Sbjct:    71 NAFMVWAKDERKRLAQQNPDLHN-AVLSKMLGQSWKNLTSAEKRPFVEEAERLRVQHLQD 129

Query:   105 MQDY 108
               +Y
Sbjct:   130 HPNY 133


>RGD|1309488 [details] [associations]
            symbol:Sox4 "SRY (sex determining region Y)-box 4" species:10116
            "Rattus norvegicus" [GO:0000976 "transcription regulatory region
            sequence-specific DNA binding" evidence=ISO] [GO:0001046 "core
            promoter sequence-specific DNA binding" evidence=ISO] [GO:0001071
            "nucleic acid binding transcription factor activity" evidence=ISO]
            [GO:0001077 "RNA polymerase II core promoter proximal region
            sequence-specific DNA binding transcription factor activity
            involved in positive regulation of transcription" evidence=ISO]
            [GO:0001105 "RNA polymerase II transcription coactivator activity"
            evidence=ISO] [GO:0001501 "skeletal system development"
            evidence=ISO] [GO:0001666 "response to hypoxia" evidence=IDA]
            [GO:0001841 "neural tube formation" evidence=ISO] [GO:0002328
            "pro-B cell differentiation" evidence=ISO] [GO:0003183 "mitral
            valve morphogenesis" evidence=ISO] [GO:0003211 "cardiac ventricle
            formation" evidence=ISO] [GO:0003215 "cardiac right ventricle
            morphogenesis" evidence=ISO] [GO:0003289 "atrial septum primum
            morphogenesis" evidence=ISO] [GO:0003357 "noradrenergic neuron
            differentiation" evidence=ISO] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
            [GO:0005739 "mitochondrion" evidence=ISO] [GO:0006355 "regulation
            of transcription, DNA-dependent" evidence=ISO] [GO:0006977 "DNA
            damage response, signal transduction by p53 class mediator
            resulting in cell cycle arrest" evidence=ISO] [GO:0007507 "heart
            development" evidence=ISO] [GO:0008284 "positive regulation of cell
            proliferation" evidence=ISO] [GO:0008285 "negative regulation of
            cell proliferation" evidence=ISO] [GO:0014009 "glial cell
            proliferation" evidence=ISO] [GO:0021510 "spinal cord development"
            evidence=ISO] [GO:0021522 "spinal cord motor neuron
            differentiation" evidence=ISO] [GO:0021782 "glial cell development"
            evidence=ISO] [GO:0030177 "positive regulation of Wnt receptor
            signaling pathway" evidence=ISO] [GO:0030217 "T cell
            differentiation" evidence=ISO] [GO:0031018 "endocrine pancreas
            development" evidence=ISO] [GO:0031397 "negative regulation of
            protein ubiquitination" evidence=ISO] [GO:0031647 "regulation of
            protein stability" evidence=ISO] [GO:0032024 "positive regulation
            of insulin secretion" evidence=ISO] [GO:0035019 "somatic stem cell
            maintenance" evidence=ISO] [GO:0035910 "ascending aorta
            morphogenesis" evidence=ISO] [GO:0042593 "glucose homeostasis"
            evidence=ISO] [GO:0042769 "DNA damage response, detection of DNA
            damage" evidence=ISO] [GO:0043065 "positive regulation of apoptotic
            process" evidence=ISO] [GO:0043066 "negative regulation of
            apoptotic process" evidence=ISO] [GO:0045727 "positive regulation
            of translation" evidence=ISO] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=ISO] [GO:0046826 "negative regulation of protein export
            from nucleus" evidence=ISO] [GO:0048485 "sympathetic nervous system
            development" evidence=ISO] [GO:0050821 "protein stabilization"
            evidence=ISO] [GO:0060070 "canonical Wnt receptor signaling
            pathway" evidence=ISO] [GO:0060174 "limb bud formation"
            evidence=ISO] [GO:0060412 "ventricular septum morphogenesis"
            evidence=ISO] [GO:0060548 "negative regulation of cell death"
            evidence=ISO] [GO:0060563 "neuroepithelial cell differentiation"
            evidence=ISO] [GO:0060993 "kidney morphogenesis" evidence=ISO]
            [GO:0071333 "cellular response to glucose stimulus" evidence=ISO]
            [GO:0090263 "positive regulation of canonical Wnt receptor
            signaling pathway" evidence=ISO] [GO:2000761 "positive regulation
            of N-terminal peptidyl-lysine acetylation" evidence=ISO]
            [GO:0005730 "nucleolus" evidence=ISO] NCBI:NP_001258134
            REFSEQ:NM_001271205
        Length = 440

 Score = 104 (41.7 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 21/97 (21%), Positives = 48/97 (49%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  E  P+  + A + K  G++WK + + +K PF++ AE+ +  +  +
Sbjct:    64 NAFMVWSQIERRKIMEQSPDMHN-AEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMAD 122

Query:   105 MQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEGSG 141
               DY  +    V +        + ++  ++ D+   G
Sbjct:   123 YPDYKYRPRKKVKSGNTGAGSAATAKPGEKGDKVAGG 159


>RGD|3759 [details] [associations]
            symbol:Sry "sex determining region Y" species:10116 "Rattus
          norvegicus" [GO:0000122 "negative regulation of transcription from
          RNA polymerase II promoter" evidence=ISO] [GO:0003677 "DNA binding"
          evidence=ISO] [GO:0003705 "RNA polymerase II distal enhancer
          sequence-specific DNA binding transcription factor activity"
          evidence=ISO] [GO:0005516 "calmodulin binding" evidence=IEA]
          [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
          evidence=ISO;IDA] [GO:0006351 "transcription, DNA-dependent"
          evidence=IEA] [GO:0007530 "sex determination" evidence=ISO]
          [GO:0007548 "sex differentiation" evidence=IEA] [GO:0008134
          "transcription factor binding" evidence=ISO] [GO:0008301 "DNA
          binding, bending" evidence=ISO] [GO:0008584 "male gonad development"
          evidence=ISO] [GO:0010629 "negative regulation of gene expression"
          evidence=ISO] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0019899
          "enzyme binding" evidence=IPI] [GO:0030154 "cell differentiation"
          evidence=IEA] [GO:0030238 "male sex determination" evidence=ISO;IEP]
          [GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO]
          [GO:0043565 "sequence-specific DNA binding" evidence=IMP] [GO:0045893
          "positive regulation of transcription, DNA-dependent" evidence=ISO]
          [GO:0045944 "positive regulation of transcription from RNA polymerase
          II promoter" evidence=IDA] [GO:2000020 "positive regulation of male
          gonad development" evidence=ISO] InterPro:IPR009071 Pfam:PF00505
          RGD:3759 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0016607
          GO:GO:0043565 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.30.10
          SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007548
          GO:GO:0030238 HOVERGEN:HBG008712 InterPro:IPR027151
          PANTHER:PTHR10270:SF84 EMBL:X89730 EMBL:AJ222688 EMBL:Z26907
          IPI:IPI00551785 PIR:S58088 ProteinModelPortal:P36394 SMR:P36394
          PRIDE:P36394 Genevestigator:P36394 Uniprot:P36394
        Length = 121

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 19/67 (28%), Positives = 39/67 (58%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    R +  + +P+ ++ + + K  G +WKS++E EK PF + A++ K+ + + 
Sbjct:    10 NAFMVWSRGERHKLAQQNPSMQN-SEISKQLGYQWKSLTEAEKRPFFQEAQRLKTLHREK 68

Query:   105 MQDYNKQ 111
               +Y  Q
Sbjct:    69 YPNYKYQ 75


>UNIPROTKB|F6RRS7 [details] [associations]
            symbol:SOX18 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0072091 "regulation of stem cell proliferation"
            evidence=IEA] [GO:0061028 "establishment of endothelial barrier"
            evidence=IEA] [GO:0060956 "endocardial cell differentiation"
            evidence=IEA] [GO:0060836 "lymphatic endothelial cell
            differentiation" evidence=IEA] [GO:0060214 "endocardium formation"
            evidence=IEA] [GO:0048866 "stem cell fate specification"
            evidence=IEA] [GO:0048469 "cell maturation" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0044212 "transcription regulatory region DNA binding"
            evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0043534 "blood vessel endothelial cell migration"
            evidence=IEA] [GO:0035050 "embryonic heart tube development"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0001946 "lymphangiogenesis" evidence=IEA]
            [GO:0001942 "hair follicle development" evidence=IEA] [GO:0001701
            "in utero embryonic development" evidence=IEA] [GO:0001570
            "vasculogenesis" evidence=IEA] [GO:0001525 "angiogenesis"
            evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            GO:GO:0045892 GO:GO:0043565 GO:GO:0001701 GO:GO:0045944
            GO:GO:0003700 GO:GO:0001525 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212 GO:GO:0001942
            GO:GO:0001946 GO:GO:0060836 GO:GO:0043534 GO:GO:0001570
            GO:GO:0048469 GO:GO:0035050 GO:GO:0072091 GO:GO:0060956
            GO:GO:0060214 GO:GO:0061028 InterPro:IPR021934 Pfam:PF12067
            PROSITE:PS51516 GeneTree:ENSGT00670000097649 GO:GO:0048866
            OMA:YLNCSRT EMBL:DAAA02036216 EMBL:DAAA02036215 IPI:IPI00717042
            Ensembl:ENSBTAT00000015485 Uniprot:F6RRS7
        Length = 388

 Score = 103 (41.3 bits), Expect = 6.7e-05, P = 6.7e-05
 Identities = 21/64 (32%), Positives = 39/64 (60%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ ++ RK+  + +P+  + A + K  G+ WK +S  EK PFVE AE+ +  + ++
Sbjct:    89 NAFMVWAKDERKRLAQQNPDLHN-AVLSKMLGKAWKELSPAEKRPFVEEAERLRVQHLRD 147

Query:   105 MQDY 108
               +Y
Sbjct:   148 HPNY 151


>UNIPROTKB|F1NFP0 [details] [associations]
            symbol:SOX7 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0043565 "sequence-specific DNA
            binding" evidence=IEA] [GO:0044212 "transcription regulatory region
            DNA binding" evidence=IEA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IEA] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893
            GO:GO:0043565 GO:GO:0003705 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212 InterPro:IPR021934
            Pfam:PF12067 PROSITE:PS51516 GeneTree:ENSGT00670000097649
            OMA:ECPALEA EMBL:AADN02018316 IPI:IPI00684202
            Ensembl:ENSGALT00000026870 Uniprot:F1NFP0
        Length = 397

 Score = 103 (41.3 bits), Expect = 6.9e-05, P = 6.9e-05
 Identities = 23/64 (35%), Positives = 40/64 (62%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ ++ RK+    +P+  + A + K  G+ WK++S  +K P+VE AE+ +    K+
Sbjct:    66 NAFMVWAKDERKRLAVQNPDLHN-AELSKMLGKSWKALSLSQKRPYVEEAERLRV---KH 121

Query:   105 MQDY 108
             MQDY
Sbjct:   122 MQDY 125


>UNIPROTKB|F1N1F9 [details] [associations]
            symbol:SOX17 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:2000043 "regulation of cardiac cell fate specification"
            evidence=IEA] [GO:2000035 "regulation of stem cell division"
            evidence=IEA] [GO:0090090 "negative regulation of canonical Wnt
            receptor signaling pathway" evidence=IEA] [GO:0072091 "regulation
            of stem cell proliferation" evidence=IEA] [GO:0072001 "renal system
            development" evidence=IEA] [GO:0061031 "endodermal digestive tract
            morphogenesis" evidence=IEA] [GO:0061010 "gall bladder development"
            evidence=IEA] [GO:0061009 "common bile duct development"
            evidence=IEA] [GO:0060956 "endocardial cell differentiation"
            evidence=IEA] [GO:0060913 "cardiac cell fate determination"
            evidence=IEA] [GO:0060807 "regulation of transcription from RNA
            polymerase II promoter involved in definitive endodermal cell fate
            specification" evidence=IEA] [GO:0060214 "endocardium formation"
            evidence=IEA] [GO:0060070 "canonical Wnt receptor signaling
            pathway" evidence=IEA] [GO:0050821 "protein stabilization"
            evidence=IEA] [GO:0048866 "stem cell fate specification"
            evidence=IEA] [GO:0048643 "positive regulation of skeletal muscle
            tissue development" evidence=IEA] [GO:0048617 "embryonic foregut
            morphogenesis" evidence=IEA] [GO:0048568 "embryonic organ
            development" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0045732 "positive regulation of protein catabolic process"
            evidence=IEA] [GO:0045597 "positive regulation of cell
            differentiation" evidence=IEA] [GO:0044212 "transcription
            regulatory region DNA binding" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0042662 "negative
            regulation of mesodermal cell fate specification" evidence=IEA]
            [GO:0042074 "cell migration involved in gastrulation" evidence=IEA]
            [GO:0031648 "protein destabilization" evidence=IEA] [GO:0030308
            "negative regulation of cell growth" evidence=IEA] [GO:0023019
            "signal transduction involved in regulation of gene expression"
            evidence=IEA] [GO:0021903 "rostrocaudal neural tube patterning"
            evidence=IEA] [GO:0008134 "transcription factor binding"
            evidence=IEA] [GO:0008013 "beta-catenin binding" evidence=IEA]
            [GO:0007493 "endodermal cell fate determination" evidence=IEA]
            [GO:0007283 "spermatogenesis" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0003713
            "transcription coactivator activity" evidence=IEA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0003308 "negative
            regulation of Wnt receptor signaling pathway involved in heart
            development" evidence=IEA] [GO:0003151 "outflow tract
            morphogenesis" evidence=IEA] [GO:0003142 "cardiogenic plate
            morphogenesis" evidence=IEA] [GO:0001947 "heart looping"
            evidence=IEA] [GO:0001828 "inner cell mass cellular morphogenesis"
            evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
            [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000122 "negative
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0050821
            GO:GO:0030308 GO:GO:0043565 GO:GO:0045597 GO:GO:0045944
            GO:GO:0007283 GO:GO:0001525 GO:GO:0005667 GO:GO:0003705
            GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0044212 GO:GO:0003713 GO:GO:0001570
            GO:GO:0090090 GO:GO:0001947 GO:GO:0045732 GO:GO:0042074
            GO:GO:0003151 GO:GO:0060070 GO:GO:0048617 GO:GO:0021903
            GO:GO:0003308 GO:GO:0031648 GO:GO:0048568 GO:GO:0023019
            GO:GO:0048643 GO:GO:2000035 GO:GO:0042662 GO:GO:0072001
            GO:GO:0007493 GO:GO:0072091 GO:GO:0061031 GO:GO:0061009
            GO:GO:0061010 GO:GO:0060913 GO:GO:0060956 GO:GO:0060214 KO:K04495
            InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516
            GeneTree:ENSGT00670000097649 CTD:64321 OMA:ALPCRDG GO:GO:0003142
            GO:GO:0001828 GO:GO:2000043 GO:GO:0060807 GO:GO:0048866
            EMBL:DAAA02038302 IPI:IPI00687993 RefSeq:NP_001193180.1
            UniGene:Bt.112292 Ensembl:ENSBTAT00000007553 GeneID:534010
            KEGG:bta:534010 NextBio:20876231 Uniprot:F1N1F9
        Length = 410

 Score = 103 (41.3 bits), Expect = 7.3e-05, P = 7.3e-05
 Identities = 28/96 (29%), Positives = 48/96 (50%)

Query:    14 DSKLKSKGAR-AGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVG 72
             D K+K + A  AG                   +AF V+ ++ RK+  + +P+  + A + 
Sbjct:    41 DMKMKGEAAASAGAPAGPAGRAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHN-AELS 99

Query:    73 KAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
             K  G+ WK+++  EK PFVE AE+ +  +   MQD+
Sbjct:   100 KMLGKSWKALTLAEKRPFVEEAERLRVQH---MQDH 132


>ZFIN|ZDB-GENE-051113-268 [details] [associations]
            symbol:sox14 "SRY-box containing gene 14"
            species:7955 "Danio rerio" [GO:0021854 "hypothalamus development"
            evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0007275 "multicellular
            organismal development" evidence=IEA] InterPro:IPR009071
            Pfam:PF00505 ZFIN:ZDB-GENE-051113-268 GO:GO:0005634 GO:GO:0006355
            GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0021854
            GeneTree:ENSGT00690000101940 HSSP:P48431 CTD:8403 eggNOG:NOG302715
            HOGENOM:HOG000231647 KO:K09267 OrthoDB:EOG47D9H0 InterPro:IPR022097
            Pfam:PF12336 EMBL:BC108033 IPI:IPI00511312 RefSeq:NP_001032769.1
            UniGene:Dr.52424 ProteinModelPortal:Q32PP9 SMR:Q32PP9 STRING:Q32PP9
            Ensembl:ENSDART00000104532 GeneID:557661 KEGG:dre:557661
            InParanoid:Q32PP9 OMA:LGCPSQH NextBio:20882094 Bgee:Q32PP9
            Uniprot:Q32PP9
        Length = 238

 Score = 99 (39.9 bits), Expect = 7.4e-05, P = 7.4e-05
 Identities = 18/64 (28%), Positives = 37/64 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    R++  + +P   + + + K  G +WK +SE EK P+++ A++ ++ + K 
Sbjct:    13 NAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSESEKRPYIDEAKRLRAQHMKE 71

Query:   105 MQDY 108
               DY
Sbjct:    72 HPDY 75


>UNIPROTKB|C9J8X5 [details] [associations]
            symbol:HMG20B "SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily E member
            1-related" species:9606 "Homo sapiens" [GO:0033234 "negative
            regulation of protein sumoylation" evidence=IEA] [GO:0045666
            "positive regulation of neuron differentiation" evidence=IEA]
            [GO:0046982 "protein heterodimerization activity" evidence=IEA]
            InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC005786 HOGENOM:HOG000247029
            OrthoDB:EOG4G7C05 HGNC:HGNC:5002 ChiTaRS:HMG20B EMBL:AC116968
            IPI:IPI00877739 ProteinModelPortal:C9J8X5 SMR:C9J8X5 STRING:C9J8X5
            Ensembl:ENST00000416526 ArrayExpress:C9J8X5 Bgee:C9J8X5
            Uniprot:C9J8X5
        Length = 215

 Score = 98 (39.6 bits), Expect = 7.5e-05, P = 7.5e-05
 Identities = 23/90 (25%), Positives = 41/90 (45%)

Query:    50 FMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109
             F+ E R+Q +  HP+      + K  G +W  +   EK  +++ AE+ K  Y K ++ Y 
Sbjct:    80 FLNERREQIRTRHPD-LPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAY- 137

Query:   110 KQLADGVNAAEENESDKSKSEVNDEDDEEG 139
              Q ++      E   +K   ++  ED   G
Sbjct:   138 -QQSEAYKMCTEKIQEK---KIKKEDSSSG 163


>UNIPROTKB|Q90ZH8 [details] [associations]
            symbol:sox18-a "Transcription factor Sox-18A" species:8355
            "Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] [GO:0043565 "sequence-specific
            DNA binding" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0006355 GO:GO:0043565 GO:GO:0006351
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            HSSP:P48431 InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516
            KO:K09270 EMBL:AB052692 EMBL:BC169575 RefSeq:NP_001082102.1
            UniGene:Xl.11958 ProteinModelPortal:Q90ZH8 SMR:Q90ZH8 GeneID:398226
            KEGG:xla:398226 CTD:398226 Xenbase:XB-GENE-864957 Uniprot:Q90ZH8
        Length = 363

 Score = 102 (41.0 bits), Expect = 7.7e-05, P = 7.7e-05
 Identities = 20/64 (31%), Positives = 40/64 (62%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ ++ RK+  + +P+  + A + K  G+ WK+++  EK PFVE AE+ +  + ++
Sbjct:    73 NAFMVWAKDERKRLAQQNPDLHN-AVLSKMLGQSWKNLTSVEKRPFVEEAERLRVQHLQD 131

Query:   105 MQDY 108
               +Y
Sbjct:   132 HPNY 135


>UNIPROTKB|Q90ZH9 [details] [associations]
            symbol:sox17a-b "Transcription factor Sox-17-alpha-B"
            species:8355 "Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS]
            [GO:0007442 "hindgut morphogenesis" evidence=IMP] [GO:0007492
            "endoderm development" evidence=IMP] [GO:0007494 "midgut
            development" evidence=IMP] [GO:0008013 "beta-catenin binding"
            evidence=ISS] [GO:0042074 "cell migration involved in gastrulation"
            evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
            evidence=IDA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0016055
            GO:GO:0043565 GO:GO:0045944 GO:GO:0006351 GO:GO:0007494
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0008013 GO:GO:0042074 GO:GO:0007492 GO:GO:0007442 HSSP:P48431
            KO:K04495 InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516
            EMBL:AB052691 EMBL:BC060350 RefSeq:NP_001083136.1 UniGene:Xl.11957
            ProteinModelPortal:Q90ZH9 SMR:Q90ZH9 GeneID:398765 KEGG:xla:398765
            CTD:398765 Xenbase:XB-GENE-6255435 Uniprot:Q90ZH9
        Length = 377

 Score = 102 (41.0 bits), Expect = 8.2e-05, P = 8.2e-05
 Identities = 23/64 (35%), Positives = 40/64 (62%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ ++ RK+  + +P+  + A + K  G+ WK++S  EK PFVE AE+ +  +   
Sbjct:    63 NAFMVWAKDERKRLAQQNPDLHN-AELSKMLGKSWKALSLAEKRPFVEEAERLRVQH--- 118

Query:   105 MQDY 108
             MQD+
Sbjct:   119 MQDH 122


>UNIPROTKB|G3MYL8 [details] [associations]
            symbol:G3MYL8 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:2000761 "positive regulation of N-terminal
            peptidyl-lysine acetylation" evidence=IEA] [GO:0090263 "positive
            regulation of canonical Wnt receptor signaling pathway"
            evidence=IEA] [GO:0071333 "cellular response to glucose stimulus"
            evidence=IEA] [GO:0060993 "kidney morphogenesis" evidence=IEA]
            [GO:0060563 "neuroepithelial cell differentiation" evidence=IEA]
            [GO:0060412 "ventricular septum morphogenesis" evidence=IEA]
            [GO:0060174 "limb bud formation" evidence=IEA] [GO:0060070
            "canonical Wnt receptor signaling pathway" evidence=IEA]
            [GO:0050821 "protein stabilization" evidence=IEA] [GO:0048485
            "sympathetic nervous system development" evidence=IEA] [GO:0046826
            "negative regulation of protein export from nucleus" evidence=IEA]
            [GO:0045727 "positive regulation of translation" evidence=IEA]
            [GO:0043066 "negative regulation of apoptotic process"
            evidence=IEA] [GO:0043065 "positive regulation of apoptotic
            process" evidence=IEA] [GO:0042769 "DNA damage response, detection
            of DNA damage" evidence=IEA] [GO:0035910 "ascending aorta
            morphogenesis" evidence=IEA] [GO:0035019 "somatic stem cell
            maintenance" evidence=IEA] [GO:0032024 "positive regulation of
            insulin secretion" evidence=IEA] [GO:0031397 "negative regulation
            of protein ubiquitination" evidence=IEA] [GO:0031018 "endocrine
            pancreas development" evidence=IEA] [GO:0030217 "T cell
            differentiation" evidence=IEA] [GO:0021782 "glial cell development"
            evidence=IEA] [GO:0021522 "spinal cord motor neuron
            differentiation" evidence=IEA] [GO:0014009 "glial cell
            proliferation" evidence=IEA] [GO:0008285 "negative regulation of
            cell proliferation" evidence=IEA] [GO:0008284 "positive regulation
            of cell proliferation" evidence=IEA] [GO:0006977 "DNA damage
            response, signal transduction by p53 class mediator resulting in
            cell cycle arrest" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003357
            "noradrenergic neuron differentiation" evidence=IEA] [GO:0003289
            "atrial septum primum morphogenesis" evidence=IEA] [GO:0003215
            "cardiac right ventricle morphogenesis" evidence=IEA] [GO:0003211
            "cardiac ventricle formation" evidence=IEA] [GO:0003183 "mitral
            valve morphogenesis" evidence=IEA] [GO:0002328 "pro-B cell
            differentiation" evidence=IEA] [GO:0001841 "neural tube formation"
            evidence=IEA] [GO:0001501 "skeletal system development"
            evidence=IEA] [GO:0001105 "RNA polymerase II transcription
            coactivator activity" evidence=IEA] [GO:0001077 "RNA polymerase II
            core promoter proximal region sequence-specific DNA binding
            transcription factor activity involved in positive regulation of
            transcription" evidence=IEA] [GO:0001046 "core promoter
            sequence-specific DNA binding" evidence=IEA] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005739 GO:GO:0005634 GO:GO:0043066
            GO:GO:0008285 GO:GO:0050821 GO:GO:0006977 GO:GO:0071333
            GO:GO:0008284 GO:GO:0045944 GO:GO:0032024 GO:GO:0001077
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0043065 GO:GO:0021522 GO:GO:0014009 GO:GO:0001501
            GO:GO:0003289 GO:GO:0003183 GO:GO:0035019 GO:GO:0060993
            GO:GO:0031018 GO:GO:0045727 GO:GO:0090263 GO:GO:0001105
            GO:GO:0048485 GO:GO:0060070 GO:GO:0031397 GO:GO:0060563
            GO:GO:0046826 GO:GO:0001046 GO:GO:0030217 GO:GO:0001841
            GO:GO:0060412 GO:GO:0060174 GO:GO:0042769 GO:GO:0002328
            GO:GO:0003215 GO:GO:0021782 GO:GO:0003357 GO:GO:0035910
            GO:GO:0003211 InterPro:IPR017386 PIRSF:PIRSF038098
            GeneTree:ENSGT00690000101789 OMA:AGCSPDG GO:GO:2000761
            EMBL:DAAA02055577 EMBL:DAAA02055578 Ensembl:ENSBTAT00000064038
            Uniprot:G3MYL8
        Length = 378

 Score = 102 (41.0 bits), Expect = 8.2e-05, P = 8.2e-05
 Identities = 25/100 (25%), Positives = 50/100 (50%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  E  P+  + A + K  G++WK + + +K PF+  AE+ +  +  +
Sbjct:    64 NAFMVWSQIERRKIMEQSPDMHN-AEISKRLGKRWKLLKDSDKIPFIREAERLRLKHMAD 122

Query:   105 MQDYNKQLADGVNAAEENESDKSK--SEVNDEDDEEG-SG 141
               DY  +    V +   N    +   S+  ++ D+ G SG
Sbjct:   123 YPDYKYRPRKKVKSGNANSGSAAAAASKPGEKGDKVGGSG 162


>UNIPROTKB|Q3KQ35 [details] [associations]
            symbol:sox17a-a "Transcription factor Sox-17-alpha-A"
            species:8355 "Xenopus laevis" [GO:0005634 "nucleus" evidence=IDA]
            [GO:0007440 "foregut morphogenesis" evidence=IMP] [GO:0007442
            "hindgut morphogenesis" evidence=IMP] [GO:0007492 "endoderm
            development" evidence=IMP] [GO:0007494 "midgut development"
            evidence=IMP] [GO:0008013 "beta-catenin binding" evidence=IDA]
            [GO:0008285 "negative regulation of cell proliferation"
            evidence=IDA] [GO:0042074 "cell migration involved in gastrulation"
            evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
            evidence=ISS] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=IMP] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IMP]
            [GO:0090090 "negative regulation of canonical Wnt receptor
            signaling pathway" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0008285 GO:GO:0016055 GO:GO:0043565
            GO:GO:0045944 GO:GO:0006351 GO:GO:0007494 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0090090
            GO:GO:0008013 GO:GO:0042074 GO:GO:0007492 GO:GO:0007440
            GO:GO:0007442 HSSP:P48431 EMBL:AJ001730 EMBL:BC106403 EMBL:AB052690
            RefSeq:NP_001081631.1 UniGene:Xl.3831 ProteinModelPortal:Q3KQ35
            SMR:Q3KQ35 GeneID:397966 KEGG:xla:397966 CTD:397966
            Xenbase:XB-GENE-865067 KO:K04495 InterPro:IPR021934 Pfam:PF12067
            PROSITE:PS51516 Uniprot:Q3KQ35
        Length = 380

 Score = 102 (41.0 bits), Expect = 8.3e-05, P = 8.3e-05
 Identities = 23/64 (35%), Positives = 40/64 (62%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ ++ RK+  + +P+  + A + K  G+ WKS++  EK PFVE AE+ +  +   
Sbjct:    66 NAFMVWAKDERKRLAQQNPDLHN-AELSKMLGKSWKSLTLAEKRPFVEEAERLRVQH--- 121

Query:   105 MQDY 108
             MQD+
Sbjct:   122 MQDH 125


>UNIPROTKB|F1RSI1 [details] [associations]
            symbol:SOX17 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:2000043 "regulation of cardiac cell fate specification"
            evidence=IEA] [GO:2000035 "regulation of stem cell division"
            evidence=IEA] [GO:0090090 "negative regulation of canonical Wnt
            receptor signaling pathway" evidence=IEA] [GO:0072091 "regulation
            of stem cell proliferation" evidence=IEA] [GO:0072001 "renal system
            development" evidence=IEA] [GO:0061031 "endodermal digestive tract
            morphogenesis" evidence=IEA] [GO:0061010 "gall bladder development"
            evidence=IEA] [GO:0061009 "common bile duct development"
            evidence=IEA] [GO:0060956 "endocardial cell differentiation"
            evidence=IEA] [GO:0060913 "cardiac cell fate determination"
            evidence=IEA] [GO:0060807 "regulation of transcription from RNA
            polymerase II promoter involved in definitive endodermal cell fate
            specification" evidence=IEA] [GO:0060214 "endocardium formation"
            evidence=IEA] [GO:0060070 "canonical Wnt receptor signaling
            pathway" evidence=IEA] [GO:0050821 "protein stabilization"
            evidence=IEA] [GO:0048866 "stem cell fate specification"
            evidence=IEA] [GO:0048643 "positive regulation of skeletal muscle
            tissue development" evidence=IEA] [GO:0048617 "embryonic foregut
            morphogenesis" evidence=IEA] [GO:0048568 "embryonic organ
            development" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0045732 "positive regulation of protein catabolic process"
            evidence=IEA] [GO:0045597 "positive regulation of cell
            differentiation" evidence=IEA] [GO:0044212 "transcription
            regulatory region DNA binding" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0042662 "negative
            regulation of mesodermal cell fate specification" evidence=IEA]
            [GO:0042074 "cell migration involved in gastrulation" evidence=IEA]
            [GO:0031648 "protein destabilization" evidence=IEA] [GO:0030308
            "negative regulation of cell growth" evidence=IEA] [GO:0023019
            "signal transduction involved in regulation of gene expression"
            evidence=IEA] [GO:0021903 "rostrocaudal neural tube patterning"
            evidence=IEA] [GO:0008134 "transcription factor binding"
            evidence=IEA] [GO:0008013 "beta-catenin binding" evidence=IEA]
            [GO:0007493 "endodermal cell fate determination" evidence=IEA]
            [GO:0007283 "spermatogenesis" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0003713
            "transcription coactivator activity" evidence=IEA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0003308 "negative
            regulation of Wnt receptor signaling pathway involved in heart
            development" evidence=IEA] [GO:0003151 "outflow tract
            morphogenesis" evidence=IEA] [GO:0003142 "cardiogenic plate
            morphogenesis" evidence=IEA] [GO:0001947 "heart looping"
            evidence=IEA] [GO:0001828 "inner cell mass cellular morphogenesis"
            evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
            [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000122 "negative
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0050821
            GO:GO:0030308 GO:GO:0043565 GO:GO:0045597 GO:GO:0045944
            GO:GO:0007283 GO:GO:0001525 GO:GO:0005667 GO:GO:0003705
            GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0044212 GO:GO:0003713 GO:GO:0001570
            GO:GO:0090090 GO:GO:0001947 GO:GO:0045732 GO:GO:0042074
            GO:GO:0003151 GO:GO:0060070 GO:GO:0048617 GO:GO:0021903
            GO:GO:0003308 GO:GO:0031648 GO:GO:0048568 GO:GO:0023019
            GO:GO:0048643 GO:GO:2000035 GO:GO:0042662 GO:GO:0072001
            GO:GO:0007493 GO:GO:0072091 GO:GO:0061031 GO:GO:0061009
            GO:GO:0061010 GO:GO:0060913 GO:GO:0060956 GO:GO:0060214 KO:K04495
            InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516
            GeneTree:ENSGT00670000097649 OMA:ALPCRDG GO:GO:0003142
            GO:GO:0001828 GO:GO:2000043 GO:GO:0060807 GO:GO:0048866
            EMBL:CU463866 RefSeq:XP_001928411.1 Ensembl:ENSSSCT00000006855
            GeneID:100154087 KEGG:ssc:100154087 Uniprot:F1RSI1
        Length = 407

 Score = 102 (41.0 bits), Expect = 9.2e-05, P = 9.2e-05
 Identities = 27/96 (28%), Positives = 48/96 (50%)

Query:    14 DSKLKSKGAR-AGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVG 72
             D K+K + A  +G                   +AF V+ ++ RK+  + +P+  + A + 
Sbjct:    41 DMKMKGEAAATSGAPAGTAGRAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHN-AELS 99

Query:    73 KAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
             K  G+ WK+++  EK PFVE AE+ +  +   MQD+
Sbjct:   100 KMLGKSWKALTLAEKRPFVEEAERLRVQH---MQDH 132


>UNIPROTKB|Q9H6I2 [details] [associations]
            symbol:SOX17 "Transcription factor SOX-17" species:9606
            "Homo sapiens" [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0001828 "inner
            cell mass cellular morphogenesis" evidence=IEA] [GO:0003308
            "negative regulation of Wnt receptor signaling pathway involved in
            heart development" evidence=IEA] [GO:0003713 "transcription
            coactivator activity" evidence=IEA] [GO:0007283 "spermatogenesis"
            evidence=IEA] [GO:0007493 "endodermal cell fate determination"
            evidence=IEA] [GO:0021903 "rostrocaudal neural tube patterning"
            evidence=IEA] [GO:0023019 "signal transduction involved in
            regulation of gene expression" evidence=IEA] [GO:0042074 "cell
            migration involved in gastrulation" evidence=IEA] [GO:0042662
            "negative regulation of mesodermal cell fate specification"
            evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0045597 "positive regulation of cell
            differentiation" evidence=IEA] [GO:0045732 "positive regulation of
            protein catabolic process" evidence=IEA] [GO:0048568 "embryonic
            organ development" evidence=IEA] [GO:0048643 "positive regulation
            of skeletal muscle tissue development" evidence=IEA] [GO:0048866
            "stem cell fate specification" evidence=IEA] [GO:0060070 "canonical
            Wnt receptor signaling pathway" evidence=IEA] [GO:0061009 "common
            bile duct development" evidence=IEA] [GO:0061010 "gall bladder
            development" evidence=IEA] [GO:0072091 "regulation of stem cell
            proliferation" evidence=IEA] [GO:2000035 "regulation of stem cell
            division" evidence=IEA] [GO:2000043 "regulation of cardiac cell
            fate specification" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0001706 "endoderm formation" evidence=IDA]
            [GO:0001947 "heart looping" evidence=ISS] [GO:0045995 "regulation
            of embryonic development" evidence=ISS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISS] [GO:0008013
            "beta-catenin binding" evidence=IPI] [GO:0008134 "transcription
            factor binding" evidence=IPI] [GO:0031648 "protein destabilization"
            evidence=IMP] [GO:0050821 "protein stabilization" evidence=IMP]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IDA] [GO:0042789 "mRNA
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0003151 "outflow tract morphogenesis" evidence=ISS] [GO:0044212
            "transcription regulatory region DNA binding" evidence=ISS]
            [GO:0003705 "RNA polymerase II distal enhancer sequence-specific
            DNA binding transcription factor activity" evidence=ISS]
            [GO:0060956 "endocardial cell differentiation" evidence=ISS]
            [GO:0060214 "endocardium formation" evidence=ISS] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0035050 "embryonic heart tube development" evidence=ISS]
            [GO:0001570 "vasculogenesis" evidence=ISS] [GO:0001525
            "angiogenesis" evidence=ISS] [GO:0005667 "transcription factor
            complex" evidence=IDA] [GO:0060914 "heart formation" evidence=TAS]
            [GO:0060913 "cardiac cell fate determination" evidence=IMP]
            [GO:0061031 "endodermal digestive tract morphogenesis"
            evidence=ISS] [GO:0060807 "regulation of transcription from RNA
            polymerase II promoter involved in definitive endodermal cell fate
            specification" evidence=ISS] [GO:0048617 "embryonic foregut
            morphogenesis" evidence=ISS] [GO:0003143 "embryonic heart tube
            morphogenesis" evidence=ISS] [GO:0003142 "cardiogenic plate
            morphogenesis" evidence=ISS] [GO:0072001 "renal system development"
            evidence=IMP] [GO:0090090 "negative regulation of canonical Wnt
            receptor signaling pathway" evidence=IMP] [GO:0030308 "negative
            regulation of cell growth" evidence=IMP] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0050821 GO:GO:0030308 GO:GO:0043565
            GO:GO:0045597 GO:GO:0045944 GO:GO:0007283 GO:GO:0001525
            GO:GO:0005667 GO:GO:0003705 GO:GO:0000122 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
            GO:GO:0003713 GO:GO:0001570 GO:GO:0090090 GO:GO:0001947
            GO:GO:0045732 GO:GO:0042074 GO:GO:0003151 GO:GO:0060070
            GO:GO:0060914 GO:GO:0042789 GO:GO:0048617 GO:GO:0021903
            GO:GO:0003308 GO:GO:0031648 GO:GO:0048568 GO:GO:0023019
            GO:GO:0045995 GO:GO:0048643 GO:GO:2000035 GO:GO:0042662
            GO:GO:0072001 GO:GO:0007493 GO:GO:0072091 GO:GO:0061031
            GO:GO:0061009 GO:GO:0061010 GO:GO:0060913 GO:GO:0060956
            GO:GO:0060214 eggNOG:NOG242943 Orphanet:289365 KO:K04495
            InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516 EMBL:AB073988
            EMBL:AK025905 IPI:IPI00007874 RefSeq:NP_071899.1 UniGene:Hs.98367
            PDB:2YUL PDB:4A3N PDBsum:2YUL PDBsum:4A3N ProteinModelPortal:Q9H6I2
            SMR:Q9H6I2 STRING:Q9H6I2 PhosphoSite:Q9H6I2 DMDM:23822216
            PRIDE:Q9H6I2 DNASU:64321 Ensembl:ENST00000297316 GeneID:64321
            KEGG:hsa:64321 UCSC:uc003xsb.4 CTD:64321 GeneCards:GC08P055370
            H-InvDB:HIX0034521 HGNC:HGNC:18122 HPA:CAB025594 MIM:610928
            MIM:613674 neXtProt:NX_Q9H6I2 PharmGKB:PA38296 HOGENOM:HOG000069999
            HOVERGEN:HBG000517 InParanoid:Q9H6I2 OMA:ALPCRDG OrthoDB:EOG4KD6M5
            PhylomeDB:Q9H6I2 EvolutionaryTrace:Q9H6I2 GenomeRNAi:64321
            NextBio:66237 ArrayExpress:Q9H6I2 Bgee:Q9H6I2 CleanEx:HS_SOX17
            Genevestigator:Q9H6I2 GermOnline:ENSG00000164736 GO:GO:0003142
            GO:GO:0001828 GO:GO:2000043 GO:GO:0060807 GO:GO:0048866
            Uniprot:Q9H6I2
        Length = 414

 Score = 102 (41.0 bits), Expect = 9.5e-05, P = 9.5e-05
 Identities = 27/96 (28%), Positives = 48/96 (50%)

Query:    14 DSKLKSKG-ARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVG 72
             D K+K +  A +G                   +AF V+ ++ RK+  + +P+  + A + 
Sbjct:    41 DMKVKGEAPANSGAPAGAAGRAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHN-AELS 99

Query:    73 KAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
             K  G+ WK+++  EK PFVE AE+ +  +   MQD+
Sbjct:   100 KMLGKSWKALTLAEKRPFVEEAERLRVQH---MQDH 132


>UNIPROTKB|F1PSM5 [details] [associations]
            symbol:SOX9 "Transcription factor SOX-9" species:9615
            "Canis lupus familiaris" [GO:2000741 "positive regulation of
            mesenchymal stem cell differentiation" evidence=IEA] [GO:2000138
            "positive regulation of cell proliferation involved in heart
            morphogenesis" evidence=IEA] [GO:2000020 "positive regulation of
            male gonad development" evidence=IEA] [GO:0090190 "positive
            regulation of branching involved in ureteric bud morphogenesis"
            evidence=IEA] [GO:0090103 "cochlea morphogenesis" evidence=IEA]
            [GO:0090090 "negative regulation of canonical Wnt receptor
            signaling pathway" evidence=IEA] [GO:0072289 "metanephric nephron
            tubule formation" evidence=IEA] [GO:0072197 "ureter morphogenesis"
            evidence=IEA] [GO:0072190 "ureter urothelium development"
            evidence=IEA] [GO:0072034 "renal vesicle induction" evidence=IEA]
            [GO:0071560 "cellular response to transforming growth factor beta
            stimulus" evidence=IEA] [GO:0071504 "cellular response to heparin"
            evidence=IEA] [GO:0071364 "cellular response to epidermal growth
            factor stimulus" evidence=IEA] [GO:0071347 "cellular response to
            interleukin-1" evidence=IEA] [GO:0071300 "cellular response to
            retinoic acid" evidence=IEA] [GO:0071260 "cellular response to
            mechanical stimulus" evidence=IEA] [GO:0070371 "ERK1 and ERK2
            cascade" evidence=IEA] [GO:0061036 "positive regulation of
            cartilage development" evidence=IEA] [GO:0060784 "regulation of
            cell proliferation involved in tissue homeostasis" evidence=IEA]
            [GO:0060729 "intestinal epithelial structure maintenance"
            evidence=IEA] [GO:0060517 "epithelial cell proliferation involved
            in prostatic bud elongation" evidence=IEA] [GO:0060221 "retinal rod
            cell differentiation" evidence=IEA] [GO:0060174 "limb bud
            formation" evidence=IEA] [GO:0060018 "astrocyte fate commitment"
            evidence=IEA] [GO:0060009 "Sertoli cell development" evidence=IEA]
            [GO:0050680 "negative regulation of epithelial cell proliferation"
            evidence=IEA] [GO:0050679 "positive regulation of epithelial cell
            proliferation" evidence=IEA] [GO:0048709 "oligodendrocyte
            differentiation" evidence=IEA] [GO:0046533 "negative regulation of
            photoreceptor cell differentiation" evidence=IEA] [GO:0045892
            "negative regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0045732 "positive regulation of protein catabolic process"
            evidence=IEA] [GO:0045662 "negative regulation of myoblast
            differentiation" evidence=IEA] [GO:0043491 "protein kinase B
            signaling cascade" evidence=IEA] [GO:0043066 "negative regulation
            of apoptotic process" evidence=IEA] [GO:0035622 "intrahepatic bile
            duct development" evidence=IEA] [GO:0035019 "somatic stem cell
            maintenance" evidence=IEA] [GO:0034236 "protein kinase A catalytic
            subunit binding" evidence=IEA] [GO:0032332 "positive regulation of
            chondrocyte differentiation" evidence=IEA] [GO:0032331 "negative
            regulation of chondrocyte differentiation" evidence=IEA]
            [GO:0031018 "endocrine pancreas development" evidence=IEA]
            [GO:0030916 "otic vesicle formation" evidence=IEA] [GO:0030903
            "notochord development" evidence=IEA] [GO:0030879 "mammary gland
            development" evidence=IEA] [GO:0030858 "positive regulation of
            epithelial cell differentiation" evidence=IEA] [GO:0030502
            "negative regulation of bone mineralization" evidence=IEA]
            [GO:0030198 "extracellular matrix organization" evidence=IEA]
            [GO:0030155 "regulation of cell adhesion" evidence=IEA] [GO:0019933
            "cAMP-mediated signaling" evidence=IEA] [GO:0019100 "male germ-line
            sex determination" evidence=IEA] [GO:0014068 "positive regulation
            of phosphatidylinositol 3-kinase cascade" evidence=IEA] [GO:0014032
            "neural crest cell development" evidence=IEA] [GO:0010634 "positive
            regulation of epithelial cell migration" evidence=IEA] [GO:0010564
            "regulation of cell cycle process" evidence=IEA] [GO:0008013
            "beta-catenin binding" evidence=IEA] [GO:0007283 "spermatogenesis"
            evidence=IEA] [GO:0007173 "epidermal growth factor receptor
            signaling pathway" evidence=IEA] [GO:0006461 "protein complex
            assembly" evidence=IEA] [GO:0006338 "chromatin remodeling"
            evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
            [GO:0005667 "transcription factor complex" evidence=IEA]
            [GO:0004672 "protein kinase activity" evidence=IEA] [GO:0003705
            "RNA polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0003682 "chromatin
            binding" evidence=IEA] [GO:0003415 "chondrocyte hypertrophy"
            evidence=IEA] [GO:0003413 "chondrocyte differentiation involved in
            endochondral bone morphogenesis" evidence=IEA] [GO:0003203
            "endocardial cushion morphogenesis" evidence=IEA] [GO:0003188
            "heart valve formation" evidence=IEA] [GO:0002683 "negative
            regulation of immune system process" evidence=IEA] [GO:0002053
            "positive regulation of mesenchymal cell proliferation"
            evidence=IEA] [GO:0001942 "hair follicle development" evidence=IEA]
            [GO:0001934 "positive regulation of protein phosphorylation"
            evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
            evidence=IEA] [GO:0001708 "cell fate specification" evidence=IEA]
            [GO:0001658 "branching involved in ureteric bud morphogenesis"
            evidence=IEA] [GO:0001503 "ossification" evidence=IEA] [GO:0001502
            "cartilage condensation" evidence=IEA] [GO:0001158 "enhancer
            sequence-specific DNA binding" evidence=IEA] [GO:0001077 "RNA
            polymerase II core promoter proximal region sequence-specific DNA
            binding transcription factor activity involved in positive
            regulation of transcription" evidence=IEA] [GO:0001046 "core
            promoter sequence-specific DNA binding" evidence=IEA]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0001708 GO:GO:0007173
            GO:GO:0045892 GO:GO:0043066 GO:GO:0006461 GO:GO:0030155
            GO:GO:0071560 GO:GO:0019933 GO:GO:0070371 GO:GO:0071300
            GO:GO:0030198 GO:GO:0014068 GO:GO:0007283 GO:GO:0003682
            GO:GO:0003705 GO:GO:0001077 GO:GO:0006338 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0004672
            GO:GO:0071504 GO:GO:0001942 GO:GO:0032332 GO:GO:0060009
            GO:GO:0090090 GO:GO:0071260 GO:GO:0035019 GO:GO:0001934
            GO:GO:0090190 GO:GO:0071364 GO:GO:0031018 GO:GO:0043491
            GO:GO:0014032 GO:GO:0001502 GO:GO:0045732 GO:GO:0001837
            GO:GO:0050680 GO:GO:0001503 GO:GO:0001658 GO:GO:0071347
            GO:GO:0001158 GO:GO:0030858 GO:GO:0048709 GO:GO:0010634
            GO:GO:0016585 GO:GO:0006334 GO:GO:0003413 GO:GO:0030879
            GO:GO:0050679 GO:GO:0002053 GO:GO:0001046 GO:GO:0030502
            GO:GO:2000138 GO:GO:0061036 GO:GO:0003203 GO:GO:0032331
            GO:GO:0045662 GO:GO:0030916 GO:GO:2000020 GO:GO:0046533
            GO:GO:0060174 GO:GO:0030903 GO:GO:0090103 GO:GO:0010564
            GO:GO:0019100 GO:GO:0060018 GO:GO:0035622 GO:GO:0072190
            GO:GO:0072289 GO:GO:0072197 GO:GO:0003188
            GeneTree:ENSGT00670000097649 InterPro:IPR022151 Pfam:PF12444
            GO:GO:2000741 GO:GO:0072034 GO:GO:0060221 GO:GO:0003415
            GO:GO:0060517 GO:GO:0060729 GO:GO:0002683 GO:GO:0060784 OMA:GAGHVWM
            EMBL:AAEX03006327 Ensembl:ENSCAFT00000007033 Uniprot:F1PSM5
        Length = 505

 Score = 103 (41.3 bits), Expect = 9.8e-05, P = 9.8e-05
 Identities = 21/67 (31%), Positives = 38/67 (56%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+     ++  + +P+  + A + K  G+ W+ ++E EK PFVE AE+ +  + K+
Sbjct:   110 NAFMVWAHAAPRKLPDQYPHLHN-AELSKLLGKLWRLLNESEKRPFVEEAERLRVQHKKD 168

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   169 HPDYKYQ 175


>UNIPROTKB|J3KT85 [details] [associations]
            symbol:SMARCE1 "SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily E member 1"
            species:9606 "Homo sapiens" [GO:0016514 "SWI/SNF complex"
            evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
            "nBAF complex" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            HGNC:HGNC:11109 EMBL:AC004585 EMBL:AC073508 Ensembl:ENST00000577721
            Uniprot:J3KT85
        Length = 101

 Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
 Identities = 24/94 (25%), Positives = 49/94 (52%)

Query:    50 FMEEFRK---QFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQ 106
             +M   RK   Q K ++P+ K +  +GK  G  W+ ++++EK  ++   E  K +YN++M+
Sbjct:     3 YMRYSRKVWDQVKASNPDLK-LWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMK 61

Query:   107 DYNKQLADGVNAAEENESDKSKSEVNDEDDEEGS 140
              Y+   A     A  N   ++++ + +E  +  S
Sbjct:    62 AYHNSPA---YLAYINAKSRAEAALEEESRQRQS 92


>UNIPROTKB|O42601 [details] [associations]
            symbol:sox17b.1 "Transcription factor Sox-17-beta.1"
            species:8355 "Xenopus laevis" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0007492 "endoderm
            development" evidence=IMP] [GO:0007494 "midgut development"
            evidence=IMP] [GO:0008013 "beta-catenin binding" evidence=IDA]
            [GO:0030178 "negative regulation of Wnt receptor signaling pathway"
            evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
            evidence=IDA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=IMP] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IMP]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0016055
            GO:GO:0043565 GO:GO:0045944 GO:GO:0006351 GO:GO:0007494
            GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0008013 GO:GO:0007492 GO:GO:0030178
            GO:GO:0007369 HSSP:P48431 InterPro:IPR021934 Pfam:PF12067
            PROSITE:PS51516 EMBL:AJ001742 EMBL:BC070615 RefSeq:NP_001081633.1
            UniGene:Xl.44 ProteinModelPortal:O42601 SMR:O42601 GeneID:397967
            KEGG:xla:397967 CTD:397967 Xenbase:XB-GENE-6252148 Uniprot:O42601
        Length = 373

 Score = 101 (40.6 bits), Expect = 0.00010, P = 0.00010
 Identities = 21/64 (32%), Positives = 39/64 (60%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ ++ RK+  + +P+  + A + K  G+ WKS++   K PFVE AE+ +  + ++
Sbjct:    63 NAFMVWAKDERKRLAQQNPDLHN-AELSKMLGKSWKSLTLATKRPFVEEAERLRVQHIQD 121

Query:   105 MQDY 108
               DY
Sbjct:   122 YPDY 125


>ZFIN|ZDB-GENE-040718-186 [details] [associations]
            symbol:sox1a "SRY-box containing gene 1a"
            species:7955 "Danio rerio" [GO:0051091 "positive regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IDA] [GO:0005667 "transcription factor complex"
            evidence=IC] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0007275 "multicellular organismal development"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            InterPro:IPR009071 Pfam:PF00505 ZFIN:ZDB-GENE-040718-186
            GO:GO:0007275 GO:GO:0051091 GO:GO:0003677 GO:GO:0006351
            GO:GO:0005667 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 eggNOG:NOG321816 GeneTree:ENSGT00690000101940
            HOGENOM:HOG000231647 KO:K09267 InterPro:IPR022097 Pfam:PF12336
            EMBL:AB242327 EMBL:CR392332 EMBL:BC076326 EMBL:BC096992
            IPI:IPI00492442 RefSeq:NP_001002483.1 UniGene:Dr.6453
            ProteinModelPortal:Q6DGL6 SMR:Q6DGL6 STRING:Q6DGL6
            Ensembl:ENSDART00000102021 GeneID:436756 KEGG:dre:436756 CTD:436756
            HOVERGEN:HBG105663 InParanoid:Q6DGL6 OMA:MHRYDMT OrthoDB:EOG40K80R
            NextBio:20831193 Bgee:Q6DGL6 Uniprot:Q6DGL6
        Length = 336

 Score = 100 (40.3 bits), Expect = 0.00011, P = 0.00011
 Identities = 20/64 (31%), Positives = 37/64 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    R++  + +P   + + + K  G +WK MSE EK PF++ A++ ++ + K 
Sbjct:    42 NAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKE 100

Query:   105 MQDY 108
               DY
Sbjct:   101 HPDY 104


>ZFIN|ZDB-GENE-060322-5 [details] [associations]
            symbol:sox1b "SRY-box containing gene 1b"
            species:7955 "Danio rerio" [GO:0005667 "transcription factor
            complex" evidence=IC] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IDA] [GO:0051091 "positive
            regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007275
            "multicellular organismal development" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] InterPro:IPR009071
            Pfam:PF00505 ZFIN:ZDB-GENE-060322-5 GO:GO:0007275 GO:GO:0051091
            GO:GO:0003677 GO:GO:0006351 GO:GO:0005667 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 eggNOG:NOG321816
            GeneTree:ENSGT00690000101940 HOGENOM:HOG000231647 KO:K09267
            InterPro:IPR022097 Pfam:PF12336 OrthoDB:EOG40K80Q
            HOVERGEN:HBG105663 EMBL:AB242328 EMBL:AL929216 EMBL:BC154495
            IPI:IPI00498420 RefSeq:NP_001032751.1 UniGene:Dr.52415
            ProteinModelPortal:Q2Z1R2 SMR:Q2Z1R2 STRING:Q2Z1R2 PRIDE:Q2Z1R2
            Ensembl:ENSDART00000010894 GeneID:562710 KEGG:dre:562710 CTD:562710
            InParanoid:Q2Z1R2 OMA:AMSTTHA NextBio:20884544 Bgee:Q2Z1R2
            Uniprot:Q2Z1R2
        Length = 340

 Score = 100 (40.3 bits), Expect = 0.00011, P = 0.00011
 Identities = 20/64 (31%), Positives = 37/64 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    R++  + +P   + + + K  G +WK MSE EK PF++ A++ ++ + K 
Sbjct:    42 NAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLMSEAEKRPFIDEAKRLRAMHMKE 100

Query:   105 MQDY 108
               DY
Sbjct:   101 HPDY 104


>ZFIN|ZDB-GENE-040426-1274 [details] [associations]
            symbol:sox4b "SRY-box containing gene 4b"
            species:7955 "Danio rerio" [GO:0031018 "endocrine pancreas
            development" evidence=IMP] InterPro:IPR009071 Pfam:PF00505
            ZFIN:ZDB-GENE-040426-1274 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0031018 HOVERGEN:HBG005040
            InterPro:IPR017386 PIRSF:PIRSF038098 HOGENOM:HOG000231874
            EMBL:AY369082 IPI:IPI00510524 UniGene:Dr.151812
            ProteinModelPortal:Q6UJB6 SMR:Q6UJB6 STRING:Q6UJB6
            InParanoid:Q6UJB6 ArrayExpress:Q6UJB6 Uniprot:Q6UJB6
        Length = 342

 Score = 100 (40.3 bits), Expect = 0.00012, P = 0.00012
 Identities = 21/82 (25%), Positives = 43/82 (52%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  E  P+  + A + K  G++WK + + +K PF+  AE+ +  +  +
Sbjct:    60 NAFMVWSQIERRKIMEQSPDMHN-AEISKRLGKRWKLLKDGDKIPFIREAERLRLKHMAD 118

Query:   105 MQDYNKQLADGVNAAEENESDK 126
               DY  +    V ++    S+K
Sbjct:   119 YPDYKYRPRKKVKSSGSKPSEK 140


>UNIPROTKB|O15370 [details] [associations]
            symbol:SOX12 "Transcription factor SOX-12" species:9606
            "Homo sapiens" [GO:0032993 "protein-DNA complex" evidence=IEA]
            [GO:0065004 "protein-DNA complex assembly" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=NAS] [GO:0045165 "cell fate commitment" evidence=IEP]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0006357
            "regulation of transcription from RNA polymerase II promoter"
            evidence=NAS] [GO:0021510 "spinal cord development" evidence=ISS]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISS] [GO:0000976 "transcription
            regulatory region sequence-specific DNA binding" evidence=ISS]
            [GO:0001105 "RNA polymerase II transcription coactivator activity"
            evidence=ISS] [GO:0001077 "RNA polymerase II core promoter proximal
            region sequence-specific DNA binding transcription factor activity
            involved in positive regulation of transcription" evidence=ISS]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0001077
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0021510 GO:GO:0000976 GO:GO:0001105 GO:GO:0045165
            GO:GO:0032993 EMBL:AL034548 GO:GO:0065004 KO:K09268
            InterPro:IPR017386 PIRSF:PIRSF038098 HOGENOM:HOG000231874
            EMBL:U35612 EMBL:BC067361 IPI:IPI00006180 RefSeq:NP_008874.2
            UniGene:Hs.43627 UniGene:Hs.712815 ProteinModelPortal:O15370
            SMR:O15370 IntAct:O15370 STRING:O15370 PhosphoSite:O15370
            PaxDb:O15370 PRIDE:O15370 Ensembl:ENST00000342665
            Ensembl:ENST00000544632 GeneID:6666 KEGG:hsa:6666 UCSC:uc002wdh.3
            CTD:6666 GeneCards:GC20P000306 HGNC:HGNC:11198 MIM:601947
            neXtProt:NX_O15370 PharmGKB:PA36035 eggNOG:NOG290369
            HOVERGEN:HBG094895 InParanoid:O15370 OMA:VQQRGAR OrthoDB:EOG41VK47
            PhylomeDB:O15370 GenomeRNAi:6666 NextBio:25991 Bgee:O15370
            CleanEx:HS_SOX12 Genevestigator:O15370 Uniprot:O15370
        Length = 315

 Score = 93 (37.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
 Identities = 20/64 (31%), Positives = 36/64 (56%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  +  P+  + A + K  G +W+ + + EK PFV  AE+ +    K+
Sbjct:    45 NAFMVWSQHERRKIMDQWPDMHN-AEISKRLGRRWQLLQDSEKIPFVREAERLRL---KH 100

Query:   105 MQDY 108
             M DY
Sbjct:   101 MADY 104

 Score = 40 (19.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query:   120 EENESDKSKSEVNDEDDEE--GSGEVFLQLLT 149
             EE E ++ ++   +E +EE   SGE  L  L+
Sbjct:   225 EEPEEEEEEAAAAEEGEEETVASGEESLGFLS 256

 Score = 35 (17.4 bits), Expect = 0.00039, Sum P(2) = 0.00039
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query:   130 EVNDEDDEEGSGEVFL 145
             E +DEDD+E   EV L
Sbjct:   163 EDDDEDDDEELLEVRL 178

 Score = 35 (17.4 bits), Expect = 0.00039, Sum P(2) = 0.00039
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query:   114 DGVNAAEENESDKSKSEVNDEDDEEGS 140
             +G  AA       S+ E  +E++EE +
Sbjct:   209 EGAAAAAAASPTPSEDEEPEEEEEEAA 235


>RGD|1305371 [details] [associations]
            symbol:Sox17 "SRY (sex determining region Y)-box 17"
            species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
            of transcription from RNA polymerase II promoter" evidence=IEA;ISO]
            [GO:0001525 "angiogenesis" evidence=IEA;ISO] [GO:0001570
            "vasculogenesis" evidence=IEA;ISO] [GO:0001706 "endoderm formation"
            evidence=ISO] [GO:0001828 "inner cell mass cellular morphogenesis"
            evidence=IEA;ISO] [GO:0001947 "heart looping" evidence=IEA;ISO]
            [GO:0003142 "cardiogenic plate morphogenesis" evidence=IEA;ISO]
            [GO:0003143 "embryonic heart tube morphogenesis" evidence=ISO]
            [GO:0003151 "outflow tract morphogenesis" evidence=IEA;ISO]
            [GO:0003308 "negative regulation of Wnt receptor signaling pathway
            involved in heart development" evidence=IEA;ISO] [GO:0003674
            "molecular_function" evidence=ND] [GO:0003677 "DNA binding"
            evidence=ISO] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISO] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IEA;ISO] [GO:0003713
            "transcription coactivator activity" evidence=IEA;ISO] [GO:0005575
            "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005667 "transcription factor complex"
            evidence=IEA;ISO] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISO] [GO:0007283 "spermatogenesis"
            evidence=IEA;ISO] [GO:0007369 "gastrulation" evidence=ISO]
            [GO:0007492 "endoderm development" evidence=ISO] [GO:0007493
            "endodermal cell fate determination" evidence=IEA;ISO] [GO:0008013
            "beta-catenin binding" evidence=IEA;ISO] [GO:0008134 "transcription
            factor binding" evidence=IEA;ISO] [GO:0008150 "biological_process"
            evidence=ND] [GO:0010628 "positive regulation of gene expression"
            evidence=ISO] [GO:0021903 "rostrocaudal neural tube patterning"
            evidence=IEA;ISO] [GO:0023019 "signal transduction involved in
            regulation of gene expression" evidence=IEA;ISO] [GO:0030178
            "negative regulation of Wnt receptor signaling pathway"
            evidence=ISO] [GO:0030308 "negative regulation of cell growth"
            evidence=IEA;ISO] [GO:0031648 "protein destabilization"
            evidence=IEA;ISO] [GO:0035050 "embryonic heart tube development"
            evidence=ISO] [GO:0042074 "cell migration involved in gastrulation"
            evidence=IEA;ISO] [GO:0042661 "regulation of mesodermal cell fate
            specification" evidence=ISO] [GO:0042662 "negative regulation of
            mesodermal cell fate specification" evidence=IEA;ISO] [GO:0042789
            "mRNA transcription from RNA polymerase II promoter" evidence=ISO]
            [GO:0043565 "sequence-specific DNA binding" evidence=IEA;ISO]
            [GO:0044212 "transcription regulatory region DNA binding"
            evidence=IEA;ISO] [GO:0045595 "regulation of cell differentiation"
            evidence=ISO] [GO:0045597 "positive regulation of cell
            differentiation" evidence=IEA;ISO] [GO:0045732 "positive regulation
            of protein catabolic process" evidence=IEA;ISO] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=ISO]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA;ISO] [GO:0045995 "regulation
            of embryonic development" evidence=ISO] [GO:0048568 "embryonic
            organ development" evidence=IEA;ISO] [GO:0048617 "embryonic foregut
            morphogenesis" evidence=IEA;ISO] [GO:0048643 "positive regulation
            of skeletal muscle tissue development" evidence=IEA;ISO]
            [GO:0048863 "stem cell differentiation" evidence=ISO] [GO:0048866
            "stem cell fate specification" evidence=IEA;ISO] [GO:0050821
            "protein stabilization" evidence=IEA;ISO] [GO:0060070 "canonical
            Wnt receptor signaling pathway" evidence=IEA;ISO] [GO:0060214
            "endocardium formation" evidence=IEA;ISO] [GO:0060807 "regulation
            of transcription from RNA polymerase II promoter involved in
            definitive endodermal cell fate specification" evidence=IEA;ISO]
            [GO:0060913 "cardiac cell fate determination" evidence=IEA;ISO]
            [GO:0060956 "endocardial cell differentiation" evidence=IEA;ISO]
            [GO:0061009 "common bile duct development" evidence=IEA;ISO]
            [GO:0061010 "gall bladder development" evidence=IEA;ISO]
            [GO:0061031 "endodermal digestive tract morphogenesis"
            evidence=IEA;ISO] [GO:0072001 "renal system development"
            evidence=IEA;ISO] [GO:0072091 "regulation of stem cell
            proliferation" evidence=IEA;ISO] [GO:0090090 "negative regulation
            of canonical Wnt receptor signaling pathway" evidence=IEA;ISO]
            [GO:2000035 "regulation of stem cell division" evidence=IEA;ISO]
            [GO:2000043 "regulation of cardiac cell fate specification"
            evidence=IEA;ISO] InterPro:IPR009071 Pfam:PF00505 RGD:1305371
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            EMBL:CH473984 KO:K04495 InterPro:IPR021934 Pfam:PF12067
            PROSITE:PS51516 GeneTree:ENSGT00670000097649 CTD:64321 OMA:ALPCRDG
            RefSeq:NP_001101372.1 UniGene:Rn.7884 Ensembl:ENSRNOT00000033116
            GeneID:312936 KEGG:rno:312936 NextBio:665393 Uniprot:G3V923
        Length = 423

 Score = 101 (40.6 bits), Expect = 0.00013, P = 0.00013
 Identities = 28/104 (26%), Positives = 52/104 (50%)

Query:     8 ADAVGTDSKLKSKG---ARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPN 64
             A+++ +   +K KG   A +G                   +AF V+ ++ RK+  + +P+
Sbjct:    33 AESLSSLGDVKVKGEVVASSGAPAGTSSRAKAESRIRRPMNAFMVWAKDERKRLAQQNPD 92

Query:    65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
               + A + K  G+ WK+++  EK PFVE AE+ +  +   MQD+
Sbjct:    93 LHN-AELSKMLGKSWKALTLAEKRPFVEEAERLRVQH---MQDH 132


>UNIPROTKB|Q32L68 [details] [associations]
            symbol:HMG20B "SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily E member
            1-related" species:9913 "Bos taurus" [GO:0005694 "chromosome"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016568
            "chromatin modification" evidence=IEA] [GO:0007049 "cell cycle"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0003677
            GO:GO:0006351 GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007049
            HOGENOM:HOG000247029 HOVERGEN:HBG059870 EMBL:BC109740
            IPI:IPI00703994 RefSeq:NP_001033143.1 UniGene:Bt.62699 HSSP:P48431
            ProteinModelPortal:Q32L68 SMR:Q32L68 STRING:Q32L68 PRIDE:Q32L68
            GeneID:507723 KEGG:bta:507723 CTD:10362 InParanoid:Q32L68
            OrthoDB:EOG4G7C05 NextBio:20868195 Uniprot:Q32L68
        Length = 317

 Score = 99 (39.9 bits), Expect = 0.00013, P = 0.00013
 Identities = 23/81 (28%), Positives = 40/81 (49%)

Query:    50 FMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109
             F+ E R+Q +  HP+      + K  G +W  +   EK  +++ AE+ K  Y K ++ Y 
Sbjct:    80 FLNERREQIRTRHPD-LPFPEITKMLGAEWSKLQPAEKQRYLDEAEREKQQYMKELRAYQ 138

Query:   110 KQLADGVNAAEENESDKSKSE 130
             +  A  +  AE+ +  K K E
Sbjct:   139 QSEAYKM-CAEKIQEKKIKKE 158


>MGI|MGI:1341190 [details] [associations]
            symbol:Hmg20b "high mobility group 20B" species:10090 "Mus
            musculus" [GO:0000400 "four-way junction DNA binding" evidence=ISA]
            [GO:0000794 "condensed nuclear chromosome" evidence=ISA]
            [GO:0002111 "BRCA2-BRAF35 complex" evidence=ISA] [GO:0003677 "DNA
            binding" evidence=TAS] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=NAS] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=NAS]
            [GO:0005694 "chromosome" evidence=IEA] [GO:0006325 "chromatin
            organization" evidence=NAS] [GO:0006338 "chromatin remodeling"
            evidence=TAS] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=NAS] [GO:0007049 "cell cycle" evidence=IEA]
            [GO:0016568 "chromatin modification" evidence=IEA] [GO:0033234
            "negative regulation of protein sumoylation" evidence=IDA]
            [GO:0035914 "skeletal muscle cell differentiation" evidence=IMP]
            [GO:0045666 "positive regulation of neuron differentiation"
            evidence=IGI] [GO:0046982 "protein heterodimerization activity"
            evidence=IPI] InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1341190
            Pfam:PF00505 GO:GO:0005694 GO:GO:0003700 GO:GO:0006351
            GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0007049 GO:GO:0045666 GO:GO:0035914
            GO:GO:0033234 HOGENOM:HOG000247029 HOVERGEN:HBG059870
            GeneTree:ENSGT00700000104521 CTD:10362 OrthoDB:EOG4G7C05
            OMA:RLRKMNT ChiTaRS:HMG20B EMBL:AF067430 EMBL:AF146224
            EMBL:AL355734 EMBL:AL355735 EMBL:BC011334 IPI:IPI00323315
            RefSeq:NP_001156637.1 RefSeq:NP_001156638.1 RefSeq:NP_034570.1
            UniGene:Mm.38474 PDB:2CRJ PDBsum:2CRJ ProteinModelPortal:Q9Z104
            SMR:Q9Z104 IntAct:Q9Z104 STRING:Q9Z104 PhosphoSite:Q9Z104
            PRIDE:Q9Z104 Ensembl:ENSMUST00000020454 Ensembl:ENSMUST00000105323
            Ensembl:ENSMUST00000105324 Ensembl:ENSMUST00000167481 GeneID:15353
            KEGG:mmu:15353 eggNOG:NOG241877 InParanoid:Q9Z104
            EvolutionaryTrace:Q9Z104 NextBio:287960 Bgee:Q9Z104
            CleanEx:MM_HMG20B Genevestigator:Q9Z104
            GermOnline:ENSMUSG00000020232 GO:GO:0002111 GO:GO:0000400
            Uniprot:Q9Z104
        Length = 317

 Score = 99 (39.9 bits), Expect = 0.00013, P = 0.00013
 Identities = 24/81 (29%), Positives = 39/81 (48%)

Query:    50 FMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109
             F+ E R+Q +  HP+      + K  G +W  +   EK  +++ AEK K  Y K +  Y 
Sbjct:    80 FLNERREQIRTRHPD-LPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQ 138

Query:   110 KQLADGVNAAEENESDKSKSE 130
             +  A  V   E+ + +K K E
Sbjct:   139 QSEAYKV-CTEKIQENKIKKE 158


>RGD|1309235 [details] [associations]
            symbol:Hmg20b "high mobility group 20 B" species:10116 "Rattus
            norvegicus" [GO:0033234 "negative regulation of protein
            sumoylation" evidence=IEA;ISO] [GO:0035914 "skeletal muscle cell
            differentiation" evidence=ISO] [GO:0045666 "positive regulation of
            neuron differentiation" evidence=IEA;ISO] [GO:0046982 "protein
            heterodimerization activity" evidence=IEA;ISO] InterPro:IPR009071
            Pfam:PF00505 RGD:1309235 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CH474029
            GeneTree:ENSGT00700000104521 CTD:10362 OrthoDB:EOG4G7C05
            OMA:RLRKMNT IPI:IPI00365950 RefSeq:NP_001102201.1 UniGene:Rn.162912
            Ensembl:ENSRNOT00000028002 GeneID:362825 KEGG:rno:362825
            UCSC:RGD:1309235 NextBio:681393 Uniprot:D4A586
        Length = 318

 Score = 99 (39.9 bits), Expect = 0.00013, P = 0.00013
 Identities = 24/81 (29%), Positives = 39/81 (48%)

Query:    50 FMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109
             F+ E R+Q +  HP+      + K  G +W  +   EK  +++ AEK K  Y K +  Y 
Sbjct:    80 FLNERREQIRTRHPD-LPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQ 138

Query:   110 KQLADGVNAAEENESDKSKSE 130
             +  A  V   E+ + +K K E
Sbjct:   139 QSEAYKV-CTEKIQENKIKKE 158


>UNIPROTKB|Q9W7R5 [details] [associations]
            symbol:SOX21 "Transcription factor SOX-21" species:9031
            "Gallus gallus" [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=IDA] [GO:0045892
            "negative regulation of transcription, DNA-dependent" evidence=IDA]
            [GO:0043565 "sequence-specific DNA binding" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IC] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0043565 GO:GO:0006351 GO:GO:0000122
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            HOVERGEN:HBG105618 InterPro:IPR022097 Pfam:PF12336 EMBL:AB026623
            IPI:IPI00574367 ProteinModelPortal:Q9W7R5 SMR:Q9W7R5 STRING:Q9W7R5
            Uniprot:Q9W7R5
        Length = 280

 Score = 98 (39.6 bits), Expect = 0.00013, P = 0.00013
 Identities = 19/64 (29%), Positives = 37/64 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    R++  + +P   + + + K  G +WK +SE EK PF++ A++ ++ + K 
Sbjct:    13 NAFMVWSRAQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPFIDEAKRLRAMHMKE 71

Query:   105 MQDY 108
               DY
Sbjct:    72 HPDY 75


>MGI|MGI:103559 [details] [associations]
            symbol:Sox18 "SRY-box containing gene 18" species:10090 "Mus
            musculus" [GO:0000122 "negative regulation of transcription from
            RNA polymerase II promoter" evidence=ISO] [GO:0000790 "nuclear
            chromatin" evidence=ISO] [GO:0000978 "RNA polymerase II core
            promoter proximal region sequence-specific DNA binding"
            evidence=ISO] [GO:0001077 "RNA polymerase II core promoter proximal
            region sequence-specific DNA binding transcription factor activity
            involved in positive regulation of transcription" evidence=ISO]
            [GO:0001525 "angiogenesis" evidence=IGI] [GO:0001568 "blood vessel
            development" evidence=IMP] [GO:0001570 "vasculogenesis"
            evidence=IGI] [GO:0001701 "in utero embryonic development"
            evidence=IMP] [GO:0001942 "hair follicle development" evidence=IMP]
            [GO:0001944 "vasculature development" evidence=IMP] [GO:0001945
            "lymph vessel development" evidence=IMP] [GO:0001946
            "lymphangiogenesis" evidence=ISO;IMP] [GO:0003677 "DNA binding"
            evidence=IDA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IDA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IC;IDA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IDA] [GO:0007507 "heart development" evidence=IMP]
            [GO:0022405 "hair cycle process" evidence=ISO] [GO:0035050
            "embryonic heart tube development" evidence=IGI] [GO:0042789 "mRNA
            transcription from RNA polymerase II promoter" evidence=ISO]
            [GO:0043565 "sequence-specific DNA binding" evidence=IDA]
            [GO:0044212 "transcription regulatory region DNA binding"
            evidence=ISO;IDA] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=IDA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISO] [GO:0048469 "cell maturation"
            evidence=IDA] [GO:0048866 "stem cell fate specification"
            evidence=IDA] [GO:0060214 "endocardium formation" evidence=IGI]
            [GO:0060836 "lymphatic endothelial cell differentiation"
            evidence=IMP] [GO:0060956 "endocardial cell differentiation"
            evidence=IGI] [GO:0061028 "establishment of endothelial barrier"
            evidence=ISO] [GO:0072091 "regulation of stem cell proliferation"
            evidence=IDA] InterPro:IPR009071 MGI:MGI:103559 Pfam:PF00505
            GO:GO:0005634 GO:GO:0045892 GO:GO:0045893 GO:GO:0043565
            GO:GO:0001701 GO:GO:0045944 GO:GO:0003700 GO:GO:0006351
            GO:GO:0001525 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0044212 GO:GO:0001942 GO:GO:0001946
            GO:GO:0060836 GO:GO:0043534 GO:GO:0001570 GO:GO:0048469
            GO:GO:0035050 GO:GO:0072091 GO:GO:0060956 GO:GO:0060214
            GO:GO:0061028 InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516
            GeneTree:ENSGT00670000097649 KO:K09270 HOGENOM:HOG000069999
            HOVERGEN:HBG000517 GO:GO:0048866 CTD:54345 eggNOG:NOG252325
            OMA:YLNCSRT OrthoDB:EOG4KSPKP EMBL:L35032 EMBL:AF288518
            EMBL:BC006612 EMBL:L29086 IPI:IPI00377924 RefSeq:NP_033262.2
            UniGene:Mm.264904 ProteinModelPortal:P43680 SMR:P43680
            STRING:P43680 PhosphoSite:P43680 PRIDE:P43680
            Ensembl:ENSMUST00000054491 GeneID:20672 KEGG:mmu:20672
            InParanoid:P43680 NextBio:299155 Bgee:P43680 CleanEx:MM_SOX18
            Genevestigator:P43680 GermOnline:ENSMUSG00000046470 Uniprot:P43680
        Length = 377

 Score = 100 (40.3 bits), Expect = 0.00013, P = 0.00013
 Identities = 20/64 (31%), Positives = 39/64 (60%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ ++ RK+  + +P+  + A + K  G+ WK ++  EK PFVE AE+ +  + ++
Sbjct:    84 NAFMVWAKDERKRLAQQNPDLHN-AVLSKMLGKAWKELNTAEKRPFVEEAERLRVQHLRD 142

Query:   105 MQDY 108
               +Y
Sbjct:   143 HPNY 146


>RGD|1311718 [details] [associations]
            symbol:Sox18 "SRY (sex determining region Y)-box 18"
            species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
            of transcription from RNA polymerase II promoter" evidence=ISO]
            [GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000978 "RNA
            polymerase II core promoter proximal region sequence-specific DNA
            binding" evidence=ISO] [GO:0001077 "RNA polymerase II core promoter
            proximal region sequence-specific DNA binding transcription factor
            activity involved in positive regulation of transcription"
            evidence=ISO] [GO:0001525 "angiogenesis" evidence=IEA;ISO]
            [GO:0001568 "blood vessel development" evidence=ISO] [GO:0001570
            "vasculogenesis" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
            development" evidence=IEA;ISO] [GO:0001942 "hair follicle
            development" evidence=IEA;ISO] [GO:0001944 "vasculature
            development" evidence=ISO] [GO:0001945 "lymph vessel development"
            evidence=ISO] [GO:0001946 "lymphangiogenesis" evidence=IEA;ISO]
            [GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
            binding" evidence=ISO] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA;ISO] [GO:0005575
            "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA;ISO] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISO] [GO:0007507 "heart development"
            evidence=ISO] [GO:0008150 "biological_process" evidence=ND]
            [GO:0022405 "hair cycle process" evidence=ISO] [GO:0035050
            "embryonic heart tube development" evidence=IEA;ISO] [GO:0042789
            "mRNA transcription from RNA polymerase II promoter" evidence=ISO]
            [GO:0043534 "blood vessel endothelial cell migration"
            evidence=IEA;ISO] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA;ISO] [GO:0044212 "transcription regulatory region DNA
            binding" evidence=IEA;ISO] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=IEA;ISO] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=ISO]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA;ISO] [GO:0048469 "cell
            maturation" evidence=IEA;ISO] [GO:0048866 "stem cell fate
            specification" evidence=IEA;ISO] [GO:0060214 "endocardium
            formation" evidence=IEA;ISO] [GO:0060836 "lymphatic endothelial
            cell differentiation" evidence=IEA;ISO] [GO:0060956 "endocardial
            cell differentiation" evidence=IEA;ISO] [GO:0061028 "establishment
            of endothelial barrier" evidence=IEA;ISO] [GO:0072091 "regulation
            of stem cell proliferation" evidence=IEA;ISO] InterPro:IPR009071
            Pfam:PF00505 RGD:1311718 GO:GO:0005634 GO:GO:0045892 GO:GO:0043565
            GO:GO:0001701 GO:GO:0045944 GO:GO:0003700 GO:GO:0001525
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0044212 GO:GO:0001942 GO:GO:0001946 GO:GO:0060836
            GO:GO:0043534 GO:GO:0001570 GO:GO:0048469 GO:GO:0035050
            GO:GO:0072091 GO:GO:0060956 GO:GO:0060214 GO:GO:0061028
            EMBL:CH474066 InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516
            GeneTree:ENSGT00670000097649 KO:K09270 HOGENOM:HOG000069999
            HOVERGEN:HBG000517 GO:GO:0048866 CTD:54345 eggNOG:NOG252325
            OMA:YLNCSRT OrthoDB:EOG4KSPKP EMBL:BC097973 IPI:IPI00211524
            RefSeq:NP_001019952.1 UniGene:Rn.22446 SMR:Q4V7E4
            Ensembl:ENSRNOT00000021790 GeneID:311723 KEGG:rno:311723
            UCSC:RGD:1311718 InParanoid:Q4V7E4 NextBio:664090
            Genevestigator:Q4V7E4 Uniprot:Q4V7E4
        Length = 377

 Score = 100 (40.3 bits), Expect = 0.00013, P = 0.00013
 Identities = 20/64 (31%), Positives = 39/64 (60%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ ++ RK+  + +P+  + A + K  G+ WK ++  EK PFVE AE+ +  + ++
Sbjct:    84 NAFMVWAKDERKRLAQQNPDLHN-AVLSKMLGKAWKELNTAEKRPFVEEAERLRVQHLRD 142

Query:   105 MQDY 108
               +Y
Sbjct:   143 HPNY 146


>WB|WBGene00004949 [details] [associations]
            symbol:sox-2 species:6239 "Caenorhabditis elegans"
            [GO:0018991 "oviposition" evidence=IMP] [GO:0040011 "locomotion"
            evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] [GO:0040010 "positive
            regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0010171 "body morphogenesis" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0002009 "morphogenesis of an
            epithelium" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
            development" evidence=IMP] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0009792 GO:GO:0002009 GO:GO:0040007 GO:GO:0018991
            GO:GO:0040010 GO:GO:0002119 GO:GO:0010171 GO:GO:0040011
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0040035 eggNOG:NOG321816 GeneTree:ENSGT00690000101940
            HSSP:P48432 KO:K09267 EMBL:FO080256 PIR:T16581 RefSeq:NP_741836.1
            ProteinModelPortal:Q21305 SMR:Q21305 STRING:Q21305 PaxDb:Q21305
            PRIDE:Q21305 EnsemblMetazoa:K08A8.2a.1 EnsemblMetazoa:K08A8.2a.2
            GeneID:181002 KEGG:cel:CELE_K08A8.2 UCSC:K08A8.2a.1 CTD:181002
            WormBase:K08A8.2a HOGENOM:HOG000020950 InParanoid:Q21305
            OMA:AQNIQNA NextBio:911930 ArrayExpress:Q21305 Uniprot:Q21305
        Length = 283

 Score = 98 (39.6 bits), Expect = 0.00014, P = 0.00014
 Identities = 20/64 (31%), Positives = 36/64 (56%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    RK+    +P   + + + K  G +WK +SE EK PF++ A++ ++ + K 
Sbjct:    65 NAFMVWSRGQRKKMALENPKMHN-SEISKRLGTEWKMLSEQEKRPFIDEAKRLRAIHMKE 123

Query:   105 MQDY 108
               DY
Sbjct:   124 HPDY 127


>UNIPROTKB|P35713 [details] [associations]
            symbol:SOX18 "Transcription factor SOX-18" species:9606
            "Homo sapiens" [GO:0001701 "in utero embryonic development"
            evidence=IEA] [GO:0001942 "hair follicle development" evidence=IEA]
            [GO:0048469 "cell maturation" evidence=IEA] [GO:0048866 "stem cell
            fate specification" evidence=IEA] [GO:0072091 "regulation of stem
            cell proliferation" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IDA] [GO:0044212
            "transcription regulatory region DNA binding" evidence=IDA]
            [GO:0061028 "establishment of endothelial barrier" evidence=IMP]
            [GO:0001525 "angiogenesis" evidence=IEP] [GO:0043534 "blood vessel
            endothelial cell migration" evidence=IEP] [GO:0001946
            "lymphangiogenesis" evidence=IMP] [GO:0022405 "hair cycle process"
            evidence=IMP] [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=IDA] [GO:0000978 "RNA
            polymerase II core promoter proximal region sequence-specific DNA
            binding" evidence=IDA] [GO:0000790 "nuclear chromatin"
            evidence=IDA] [GO:0001077 "RNA polymerase II core promoter proximal
            region sequence-specific DNA binding transcription factor activity
            involved in positive regulation of transcription" evidence=IDA]
            [GO:0042789 "mRNA transcription from RNA polymerase II promoter"
            evidence=IDA] [GO:0003151 "outflow tract morphogenesis"
            evidence=ISS] [GO:0001947 "heart looping" evidence=ISS] [GO:0001570
            "vasculogenesis" evidence=ISS] [GO:0001944 "vasculature
            development" evidence=ISS] [GO:0035050 "embryonic heart tube
            development" evidence=ISS] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=ISS] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0060214 "endocardium formation" evidence=ISS] [GO:0060836
            "lymphatic endothelial cell differentiation" evidence=ISS]
            [GO:0060956 "endocardial cell differentiation" evidence=ISS]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0001701 GO:GO:0001525
            GO:GO:0000978 GO:GO:0001077 GO:GO:0000122 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000790
            GO:GO:0001942 GO:GO:0001946 GO:GO:0060836 GO:GO:0043534
            GO:GO:0001570 GO:GO:0001947 GO:GO:0003151 GO:GO:0042789
            GO:GO:0048469 GO:GO:0072091 GO:GO:0060956 GO:GO:0060214
            GO:GO:0061028 EMBL:AL355803 InterPro:IPR021934 Pfam:PF12067
            PROSITE:PS51516 KO:K09270 HOGENOM:HOG000069999 HOVERGEN:HBG000517
            GO:GO:0048866 EMBL:AJ243896 EMBL:AB033888 EMBL:AF270652
            EMBL:BC038590 EMBL:BC073971 EMBL:BC111390 EMBL:X65664
            IPI:IPI00020428 PIR:S22941 RefSeq:NP_060889.1 UniGene:Hs.8619
            ProteinModelPortal:P35713 SMR:P35713 IntAct:P35713 STRING:P35713
            PhosphoSite:P35713 DMDM:12644232 PaxDb:P35713 PRIDE:P35713
            Ensembl:ENST00000340356 GeneID:54345 KEGG:hsa:54345 UCSC:uc002yhs.3
            CTD:54345 GeneCards:GC20M062679 HGNC:HGNC:11194 MIM:601618
            MIM:607823 neXtProt:NX_P35713 Orphanet:69735 PharmGKB:PA36031
            eggNOG:NOG252325 InParanoid:P35713 OMA:YLNCSRT OrthoDB:EOG4KSPKP
            GenomeRNAi:54345 NextBio:56587 Bgee:P35713 CleanEx:HS_SOX18
            Genevestigator:P35713 GermOnline:ENSG00000203883 GO:GO:0022405
            Uniprot:P35713
        Length = 384

 Score = 100 (40.3 bits), Expect = 0.00014, P = 0.00014
 Identities = 20/64 (31%), Positives = 39/64 (60%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ ++ RK+  + +P+  + A + K  G+ WK ++  EK PFVE AE+ +  + ++
Sbjct:    90 NAFMVWAKDERKRLAQQNPDLHN-AVLSKMLGKAWKELNAAEKRPFVEEAERLRVQHLRD 148

Query:   105 MQDY 108
               +Y
Sbjct:   149 HPNY 152


>MGI|MGI:1914117 [details] [associations]
            symbol:Hmg20a "high mobility group 20A" species:10090 "Mus
            musculus" [GO:0000122 "negative regulation of transcription from
            RNA polymerase II promoter" evidence=IMP] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0016568 "chromatin modification" evidence=IMP] [GO:0045665
            "negative regulation of neuron differentiation" evidence=IGI;IDA]
            [GO:0046982 "protein heterodimerization activity" evidence=IPI]
            InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1914117 Pfam:PF00505
            GO:GO:0005634 GO:GO:0003677 GO:GO:0045665 GO:GO:0006351
            GO:GO:0016568 GO:GO:0000122 eggNOG:COG5648 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 CTD:10363
            HOVERGEN:HBG059870 OMA:DKERYMR OrthoDB:EOG4H4643 ChiTaRS:HMG20A
            EMBL:DQ182735 EMBL:AK004596 EMBL:AK017716 EMBL:AK032790
            EMBL:AK039222 EMBL:AK086346 EMBL:AK134213 EMBL:BC013804
            EMBL:BC068257 IPI:IPI00120110 IPI:IPI00228054 IPI:IPI00458691
            IPI:IPI00473389 RefSeq:NP_080088.1 UniGene:Mm.150856
            ProteinModelPortal:Q9DC33 SMR:Q9DC33 IntAct:Q9DC33 STRING:Q9DC33
            PhosphoSite:Q9DC33 PaxDb:Q9DC33 PRIDE:Q9DC33
            Ensembl:ENSMUST00000034879 GeneID:66867 KEGG:mmu:66867
            UCSC:uc009ptb.1 UCSC:uc009ptc.1 UCSC:uc009ptd.1 UCSC:uc009pte.1
            GeneTree:ENSGT00700000104521 InParanoid:Q9DC33 NextBio:322867
            Bgee:Q9DC33 CleanEx:MM_HMG20A Genevestigator:Q9DC33
            GermOnline:ENSMUSG00000032329 Uniprot:Q9DC33
        Length = 346

 Score = 99 (39.9 bits), Expect = 0.00015, P = 0.00015
 Identities = 22/84 (26%), Positives = 39/84 (46%)

Query:    50 FMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109
             FM E R+Q +   P       + +  G +W  +  +EK  +++ A++ K  Y K ++ Y 
Sbjct:   112 FMNERREQLRAKRPE-VPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQ 170

Query:   110 KQLADGVNAAEENESDKSKSEVND 133
             K  A  V + +  +  K KS   D
Sbjct:   171 KTEAYKVFSRKTQDRQKGKSHRQD 194


>UNIPROTKB|Q0VCL5 [details] [associations]
            symbol:HMG20A "High-mobility group 20A" species:9913 "Bos
            taurus" [GO:0046982 "protein heterodimerization activity"
            evidence=IEA] [GO:0045665 "negative regulation of neuron
            differentiation" evidence=IEA] [GO:0016568 "chromatin modification"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000122
            "negative regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 CTD:10363 HOGENOM:HOG000247029 HOVERGEN:HBG059870
            OMA:DKERYMR OrthoDB:EOG4H4643 GeneTree:ENSGT00700000104521
            EMBL:DAAA02052476 EMBL:DAAA02052477 EMBL:BC120108 IPI:IPI00714562
            RefSeq:NP_001069105.1 UniGene:Bt.103436 SMR:Q0VCL5
            Ensembl:ENSBTAT00000027243 GeneID:513719 KEGG:bta:513719
            InParanoid:Q0VCL5 NextBio:20871001 Uniprot:Q0VCL5
        Length = 347

 Score = 99 (39.9 bits), Expect = 0.00015, P = 0.00015
 Identities = 22/84 (26%), Positives = 39/84 (46%)

Query:    50 FMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109
             FM E R+Q +   P       + +  G +W  +  +EK  +++ A++ K  Y K ++ Y 
Sbjct:   113 FMNERREQLRAKRPE-VPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQ 171

Query:   110 KQLADGVNAAEENESDKSKSEVND 133
             K  A  V + +  +  K KS   D
Sbjct:   172 KTEAYKVFSRKTQDRQKGKSHRQD 195


>UNIPROTKB|E2RKW6 [details] [associations]
            symbol:HMG20A "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0046982 "protein heterodimerization activity"
            evidence=IEA] [GO:0045665 "negative regulation of neuron
            differentiation" evidence=IEA] [GO:0016568 "chromatin modification"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000122
            "negative regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            CTD:10363 OMA:DKERYMR GeneTree:ENSGT00700000104521
            EMBL:AAEX03016351 RefSeq:XP_853367.1 ProteinModelPortal:E2RKW6
            Ensembl:ENSCAFT00000028701 GeneID:487661 KEGG:cfa:487661
            NextBio:20861223 Uniprot:E2RKW6
        Length = 347

 Score = 99 (39.9 bits), Expect = 0.00015, P = 0.00015
 Identities = 22/84 (26%), Positives = 39/84 (46%)

Query:    50 FMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109
             FM E R+Q +   P       + +  G +W  +  +EK  +++ A++ K  Y K ++ Y 
Sbjct:   113 FMNERREQLRAKRPE-VPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQ 171

Query:   110 KQLADGVNAAEENESDKSKSEVND 133
             K  A  V + +  +  K KS   D
Sbjct:   172 KTEAYKVFSRKTQDRQKGKSHRQD 195


>UNIPROTKB|Q9NP66 [details] [associations]
            symbol:HMG20A "High mobility group protein 20A"
            species:9606 "Homo sapiens" [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0016568 "chromatin modification" evidence=IEA] [GO:0045665
            "negative regulation of neuron differentiation" evidence=IEA]
            [GO:0046982 "protein heterodimerization activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003677 "DNA binding"
            evidence=NAS] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=NAS] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=NAS]
            [GO:0006325 "chromatin organization" evidence=NAS] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
            GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CH471136 GO:GO:0006325
            CTD:10363 HOGENOM:HOG000247029 HOVERGEN:HBG059870 EMBL:AF146222
            EMBL:AL355736 EMBL:AL355737 EMBL:AK001601 EMBL:BT006716
            EMBL:AK223100 EMBL:AC090984 EMBL:BC021959 IPI:IPI00018924
            IPI:IPI00759508 RefSeq:NP_060670.1 UniGene:Hs.69594
            ProteinModelPortal:Q9NP66 SMR:Q9NP66 IntAct:Q9NP66
            MINT:MINT-1198360 STRING:Q9NP66 PhosphoSite:Q9NP66 DMDM:74734297
            PaxDb:Q9NP66 PeptideAtlas:Q9NP66 PRIDE:Q9NP66 DNASU:10363
            Ensembl:ENST00000336216 Ensembl:ENST00000381714 GeneID:10363
            KEGG:hsa:10363 UCSC:uc002bcq.1 UCSC:uc002bcr.3
            GeneCards:GC15P077712 HGNC:HGNC:5001 HPA:HPA008126 MIM:605534
            neXtProt:NX_Q9NP66 PharmGKB:PA29331 InParanoid:Q9NP66 OMA:DKERYMR
            OrthoDB:EOG4H4643 PhylomeDB:Q9NP66 ChiTaRS:HMG20A GenomeRNAi:10363
            NextBio:39285 ArrayExpress:Q9NP66 Bgee:Q9NP66 CleanEx:HS_HMG20A
            Genevestigator:Q9NP66 GermOnline:ENSG00000140382 Uniprot:Q9NP66
        Length = 347

 Score = 99 (39.9 bits), Expect = 0.00015, P = 0.00015
 Identities = 22/84 (26%), Positives = 39/84 (46%)

Query:    50 FMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109
             FM E R+Q +   P       + +  G +W  +  +EK  +++ A++ K  Y K ++ Y 
Sbjct:   113 FMNERREQLRAKRPE-VPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQ 171

Query:   110 KQLADGVNAAEENESDKSKSEVND 133
             K  A  V + +  +  K KS   D
Sbjct:   172 KTEAYKVFSRKTQDRQKGKSHRQD 195


>UNIPROTKB|O42342 [details] [associations]
            symbol:sox7 "Transcription factor Sox-7" species:8355
            "Xenopus laevis" [GO:0001706 "endoderm formation" evidence=IMP]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0007507 "heart development"
            evidence=IMP] [GO:0030178 "negative regulation of Wnt receptor
            signaling pathway" evidence=IMP] [GO:0043565 "sequence-specific DNA
            binding" evidence=IDA] [GO:0044212 "transcription regulatory region
            DNA binding" evidence=IDA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IMP]
            [GO:0048793 "pronephros development" evidence=ISS]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0007507
            GO:GO:0030154 GO:GO:0043565 GO:GO:0045944 GO:GO:0006351
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0044212 GO:GO:0030178 GO:GO:0048793 GO:GO:0001706 HSSP:P48431
            InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516 KO:K09270 CTD:83595
            EMBL:D83649 RefSeq:NP_001079337.1 UniGene:Xl.1241
            ProteinModelPortal:O42342 SMR:O42342 GeneID:378665 KEGG:xla:378665
            Xenbase:XB-GENE-865761 Uniprot:O42342
        Length = 362

 Score = 99 (39.9 bits), Expect = 0.00016, P = 0.00016
 Identities = 22/64 (34%), Positives = 39/64 (60%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ ++ RK+    +P+  + A + K  G+ WK++S  +K P+VE AE+ +  +   
Sbjct:    47 NAFMVWAKDERKRLAVQNPDLHN-AELSKMLGKSWKALSPAQKRPYVEEAERLRVQH--- 102

Query:   105 MQDY 108
             MQDY
Sbjct:   103 MQDY 106


>UNIPROTKB|Q28GD5 [details] [associations]
            symbol:sox7 "Transcription factor Sox-7" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0001706 "endoderm formation"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0007507
            "heart development" evidence=ISS] [GO:0043565 "sequence-specific
            DNA binding" evidence=ISS] [GO:0044212 "transcription regulatory
            region DNA binding" evidence=ISS] [GO:0045944 "positive regulation
            of transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0048793 "pronephros development" evidence=IMP]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0007507
            GO:GO:0043565 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
            GO:GO:0001570 GO:GO:0048793 GO:GO:0001706 eggNOG:NOG242943
            InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516
            GeneTree:ENSGT00670000097649 KO:K09270 HOGENOM:HOG000069999
            CTD:83595 OrthoDB:EOG447FTC EMBL:CR761431 EMBL:BC170859
            RefSeq:NP_001016326.1 UniGene:Str.66419 ProteinModelPortal:Q28GD5
            SMR:Q28GD5 STRING:Q28GD5 Ensembl:ENSXETT00000001530 GeneID:549080
            KEGG:xtr:549080 Xenbase:XB-GENE-488067 OMA:SFECSAG Bgee:Q28GD5
            Uniprot:Q28GD5
        Length = 362

 Score = 99 (39.9 bits), Expect = 0.00016, P = 0.00016
 Identities = 22/64 (34%), Positives = 39/64 (60%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ ++ RK+    +P+  + A + K  G+ WK++S  +K P+VE AE+ +  +   
Sbjct:    47 NAFMVWAKDERKRLAVQNPDLHN-AELSKMLGKSWKALSPAQKRPYVEEAERLRVQH--- 102

Query:   105 MQDY 108
             MQDY
Sbjct:   103 MQDY 106


>FB|FBgn0030093 [details] [associations]
            symbol:dalao "dalao" species:7227 "Drosophila melanogaster"
            [GO:0003713 "transcription coactivator activity" evidence=IC]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IDA] [GO:0035060 "brahma complex" evidence=NAS;IDA;IPI]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0003677 "DNA
            binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0006338 "chromatin remodeling" evidence=IGI;IPI]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893 GO:GO:0006338
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0035060 HSSP:P07155 EMBL:AF348329 ProteinModelPortal:Q9BIW6
            DIP:DIP-36731N IntAct:Q9BIW6 STRING:Q9BIW6 PRIDE:Q9BIW6
            FlyBase:FBgn0030093 InParanoid:Q9BIW6 ArrayExpress:Q9BIW6
            Bgee:Q9BIW6 Uniprot:Q9BIW6
        Length = 749

 Score = 103 (41.3 bits), Expect = 0.00016, P = 0.00016
 Identities = 27/84 (32%), Positives = 42/84 (50%)

Query:    59 KEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNA 118
             K  HP  K +  +GK  G  WK + EDEK  F++  E  K +Y K+++ Y++  A     
Sbjct:   108 KAKHPELK-LWELGKKIGAMWKLLPEDEKTEFIDEYEAEKLEYEKSLKAYHQTPA---YQ 163

Query:   119 AEENESDKSKSEVN-DEDDEEGSG 141
             A  +   K K++V+  E    G G
Sbjct:   164 AYMSAKSKVKTDVDMHETPSRGGG 187


>ZFIN|ZDB-GENE-030909-1 [details] [associations]
            symbol:sox2 "SRY-box containing gene 2" species:7955
            "Danio rerio" [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IDA] [GO:0051091 "positive
            regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IDA] [GO:0005667 "transcription factor complex"
            evidence=IC] [GO:0031101 "fin regeneration" evidence=IMP]
            [GO:0048592 "eye morphogenesis" evidence=IMP] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0007275 "multicellular organismal development" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            ZFIN:ZDB-GENE-030909-1 GO:GO:0005737 GO:GO:0051091 GO:GO:0003677
            GO:GO:0006351 GO:GO:0005667 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0031101 OrthoDB:EOG4MPHQV
            GeneTree:ENSGT00690000101940 GO:GO:0048592 eggNOG:NOG302715
            HOGENOM:HOG000231647 KO:K09267 InterPro:IPR022097 Pfam:PF12336
            HOVERGEN:HBG105663 CTD:6657 OMA:MSALQYN EMBL:AB242329 EMBL:BC056743
            EMBL:BC065656 IPI:IPI00499339 RefSeq:NP_998283.1 UniGene:Dr.5379
            ProteinModelPortal:Q6P0E1 SMR:Q6P0E1 STRING:Q6P0E1 PRIDE:Q6P0E1
            Ensembl:ENSDART00000104493 GeneID:378723 KEGG:dre:378723
            InParanoid:Q6P0E1 NextBio:20813795 Bgee:Q6P0E1 Uniprot:Q6P0E1
        Length = 315

 Score = 98 (39.6 bits), Expect = 0.00017, P = 0.00017
 Identities = 19/64 (29%), Positives = 37/64 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    R++  + +P   + + + K  G +WK +SE EK PF++ A++ ++ + K 
Sbjct:    43 NAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSESEKRPFIDEAKRLRALHMKE 101

Query:   105 MQDY 108
               DY
Sbjct:   102 HPDY 105


>ZFIN|ZDB-GENE-980526-466 [details] [associations]
            symbol:sox11b "SRY-box containing gene 11b"
            species:7955 "Danio rerio" [GO:0009611 "response to wounding"
            evidence=IMP] [GO:0030182 "neuron differentiation" evidence=IMP]
            InterPro:IPR009071 Pfam:PF00505 ZFIN:ZDB-GENE-980526-466
            GO:GO:0009611 GO:GO:0030182 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 HOVERGEN:HBG005040
            InterPro:IPR017386 PIRSF:PIRSF038098 HSSP:P48432 EMBL:U85091
            IPI:IPI00486894 UniGene:Dr.77148 ProteinModelPortal:Q9YH22
            SMR:Q9YH22 Uniprot:Q9YH22
        Length = 368

 Score = 99 (39.9 bits), Expect = 0.00017, P = 0.00017
 Identities = 19/64 (29%), Positives = 36/64 (56%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  E  P+  + A + K  G++WK + + EK PF+  AE+ +  +  +
Sbjct:    51 NAFMVWSKIERRKIMEQSPDMHN-AEISKRLGKRWKMLKDSEKIPFIREAERLRLQHMAD 109

Query:   105 MQDY 108
               DY
Sbjct:   110 YPDY 113


>UNIPROTKB|F1MIK5 [details] [associations]
            symbol:SOX1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0021884 "forebrain neuron development" evidence=IEA]
            [GO:0021521 "ventral spinal cord interneuron specification"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0002089 "lens
            morphogenesis in camera-type eye" evidence=IEA] [GO:0001764 "neuron
            migration" evidence=IEA] [GO:0001046 "core promoter
            sequence-specific DNA binding" evidence=IEA] InterPro:IPR009071
            Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0001046 GeneTree:ENSGT00690000101940
            KO:K09267 InterPro:IPR022097 Pfam:PF12336 OMA:MHRYDMT CTD:6656
            EMBL:DAAA02034934 IPI:IPI00693232 RefSeq:XP_002692040.1
            RefSeq:XP_875555.1 Ensembl:ENSBTAT00000052847 GeneID:618135
            KEGG:bta:618135 NextBio:20901019 Uniprot:F1MIK5
        Length = 369

 Score = 99 (39.9 bits), Expect = 0.00017, P = 0.00017
 Identities = 20/64 (31%), Positives = 37/64 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    R++  + +P   + + + K  G +WK MSE EK PF++ A++ ++ + K 
Sbjct:    51 NAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKE 109

Query:   105 MQDY 108
               DY
Sbjct:   110 HPDY 113


>UNIPROTKB|E1BHN5 [details] [associations]
            symbol:LOC614121 "Uncharacterized protein" species:9913
            "Bos taurus" [GO:0048863 "stem cell differentiation" evidence=IEA]
            [GO:0043588 "skin development" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0001942
            "hair follicle development" evidence=IEA] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0043588 GO:GO:0003677 GO:GO:0048863
            GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0001942 GeneTree:ENSGT00690000101940
            InterPro:IPR022097 Pfam:PF12336 OMA:KPKTLMK EMBL:DAAA02034004
            EMBL:DAAA02034005 IPI:IPI00694817 Ensembl:ENSBTAT00000030439
            Uniprot:E1BHN5
        Length = 204

 Score = 97 (39.2 bits), Expect = 0.00017, P = 0.00017
 Identities = 18/64 (28%), Positives = 37/64 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    R++  + +P   + + + K  G +WK ++E EK PF++ A++ ++ + K 
Sbjct:    13 NAFMVWSRAQRRKMAQENPKMHN-SEISKRLGAEWKLLTESEKRPFIDEAKRLRAMHMKE 71

Query:   105 MQDY 108
               DY
Sbjct:    72 HPDY 75


>UNIPROTKB|Q9P0W2 [details] [associations]
            symbol:HMG20B "SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily E member
            1-related" species:9606 "Homo sapiens" [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
            [GO:0016568 "chromatin modification" evidence=IEA] [GO:0033234
            "negative regulation of protein sumoylation" evidence=IEA]
            [GO:0045666 "positive regulation of neuron differentiation"
            evidence=IEA] [GO:0046982 "protein heterodimerization activity"
            evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005634
            "nucleus" evidence=NAS] [GO:0003677 "DNA binding" evidence=NAS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=NAS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=NAS] [GO:0006325 "chromatin organization"
            evidence=NAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0007596
            "blood coagulation" evidence=TAS] [GO:0005515 "protein binding"
            evidence=IPI] Reactome:REACT_604 InterPro:IPR009071 PROSITE:PS00353
            EMBL:AF331191 Pfam:PF00505 GO:GO:0005694 GO:GO:0005654
            GO:GO:0003677 GO:GO:0007596 GO:GO:0003700 GO:GO:0006351
            GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007049 EMBL:CH471139
            GO:GO:0006325 EMBL:AC005786 HOVERGEN:HBG059870 CTD:10362
            EMBL:AF146223 EMBL:AL355709 EMBL:AF288679 EMBL:AF072165
            EMBL:AK090733 EMBL:BC002552 EMBL:BC003505 EMBL:BC004408
            EMBL:BC021585 EMBL:AF072836 EMBL:CR456754 IPI:IPI00464951
            IPI:IPI00478316 IPI:IPI00929221 RefSeq:NP_006330.2
            UniGene:Hs.406534 ProteinModelPortal:Q9P0W2 SMR:Q9P0W2
            IntAct:Q9P0W2 MINT:MINT-1372120 STRING:Q9P0W2 PhosphoSite:Q9P0W2
            DMDM:57012878 PRIDE:Q9P0W2 DNASU:10362 Ensembl:ENST00000333651
            GeneID:10362 KEGG:hsa:10362 UCSC:uc002lya.3 GeneCards:GC19P003572
            HGNC:HGNC:5002 MIM:605535 neXtProt:NX_Q9P0W2 PharmGKB:PA29332
            InParanoid:Q9P0W2 OMA:RLRKMNT ChiTaRS:HMG20B GenomeRNAi:10362
            NextBio:39281 ArrayExpress:Q9P0W2 Bgee:Q9P0W2 CleanEx:HS_HMG20B
            Genevestigator:Q9P0W2 GermOnline:ENSG00000064961 Uniprot:Q9P0W2
        Length = 317

 Score = 98 (39.6 bits), Expect = 0.00017, P = 0.00017
 Identities = 23/90 (25%), Positives = 41/90 (45%)

Query:    50 FMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109
             F+ E R+Q +  HP+      + K  G +W  +   EK  +++ AE+ K  Y K ++ Y 
Sbjct:    80 FLNERREQIRTRHPD-LPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAY- 137

Query:   110 KQLADGVNAAEENESDKSKSEVNDEDDEEG 139
              Q ++      E   +K   ++  ED   G
Sbjct:   138 -QQSEAYKMCTEKIQEK---KIKKEDSSSG 163


>UNIPROTKB|O57401 [details] [associations]
            symbol:SOX1 "Transcription factor SOX-1" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            HSSP:P48432 KO:K09267 InterPro:IPR022097 Pfam:PF12336
            HOVERGEN:HBG105663 EMBL:AB011802 IPI:IPI00597708 RefSeq:NP_989664.1
            UniGene:Gga.165 ProteinModelPortal:O57401 SMR:O57401 GeneID:374240
            KEGG:gga:374240 CTD:6656 NextBio:20813736 Uniprot:O57401
        Length = 373

 Score = 99 (39.9 bits), Expect = 0.00017, P = 0.00017
 Identities = 20/64 (31%), Positives = 37/64 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    R++  + +P   + + + K  G +WK MSE EK PF++ A++ ++ + K 
Sbjct:    53 NAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKE 111

Query:   105 MQDY 108
               DY
Sbjct:   112 HPDY 115


>MGI|MGI:98366 [details] [associations]
            symbol:Sox4 "SRY-box containing gene 4" species:10090 "Mus
            musculus" [GO:0000976 "transcription regulatory region
            sequence-specific DNA binding" evidence=IDA] [GO:0001046 "core
            promoter sequence-specific DNA binding" evidence=ISO;IDA]
            [GO:0001071 "nucleic acid binding transcription factor activity"
            evidence=ISO;IDA] [GO:0001077 "RNA polymerase II core promoter
            proximal region sequence-specific DNA binding transcription factor
            activity involved in positive regulation of transcription"
            evidence=ISO;IDA] [GO:0001105 "RNA polymerase II transcription
            coactivator activity" evidence=IDA] [GO:0001501 "skeletal system
            development" evidence=IMP] [GO:0001666 "response to hypoxia"
            evidence=ISO] [GO:0001841 "neural tube formation" evidence=IMP]
            [GO:0002328 "pro-B cell differentiation" evidence=IMP] [GO:0003183
            "mitral valve morphogenesis" evidence=IMP] [GO:0003211 "cardiac
            ventricle formation" evidence=IMP] [GO:0003215 "cardiac right
            ventricle morphogenesis" evidence=IMP] [GO:0003289 "atrial septum
            primum morphogenesis" evidence=IMP] [GO:0003357 "noradrenergic
            neuron differentiation" evidence=IMP] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISO] [GO:0005634 "nucleus"
            evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=ISO]
            [GO:0006977 "DNA damage response, signal transduction by p53 class
            mediator resulting in cell cycle arrest" evidence=ISO] [GO:0007507
            "heart development" evidence=IMP] [GO:0008284 "positive regulation
            of cell proliferation" evidence=ISO;IMP] [GO:0008285 "negative
            regulation of cell proliferation" evidence=ISO] [GO:0014009 "glial
            cell proliferation" evidence=IMP] [GO:0021510 "spinal cord
            development" evidence=IMP] [GO:0021522 "spinal cord motor neuron
            differentiation" evidence=IMP] [GO:0021782 "glial cell development"
            evidence=IMP] [GO:0030177 "positive regulation of Wnt receptor
            signaling pathway" evidence=IMP] [GO:0030217 "T cell
            differentiation" evidence=IMP] [GO:0031018 "endocrine pancreas
            development" evidence=IMP] [GO:0031397 "negative regulation of
            protein ubiquitination" evidence=ISO] [GO:0031647 "regulation of
            protein stability" evidence=ISO] [GO:0032024 "positive regulation
            of insulin secretion" evidence=IMP] [GO:0035019 "somatic stem cell
            maintenance" evidence=IDA] [GO:0035910 "ascending aorta
            morphogenesis" evidence=IMP] [GO:0042593 "glucose homeostasis"
            evidence=IMP] [GO:0042769 "DNA damage response, detection of DNA
            damage" evidence=ISO] [GO:0043065 "positive regulation of apoptotic
            process" evidence=ISO] [GO:0043066 "negative regulation of
            apoptotic process" evidence=ISO] [GO:0045727 "positive regulation
            of translation" evidence=ISO] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=ISO;IDA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=ISO;IDA] [GO:0046826 "negative regulation of
            protein export from nucleus" evidence=ISO] [GO:0048485 "sympathetic
            nervous system development" evidence=IMP] [GO:0050821 "protein
            stabilization" evidence=ISO;IMP] [GO:0060070 "canonical Wnt
            receptor signaling pathway" evidence=IMP] [GO:0060174 "limb bud
            formation" evidence=IMP] [GO:0060412 "ventricular septum
            morphogenesis" evidence=IMP] [GO:0060548 "negative regulation of
            cell death" evidence=IMP] [GO:0060563 "neuroepithelial cell
            differentiation" evidence=IMP] [GO:0060993 "kidney morphogenesis"
            evidence=IMP] [GO:0071333 "cellular response to glucose stimulus"
            evidence=IMP] [GO:0090263 "positive regulation of canonical Wnt
            receptor signaling pathway" evidence=IDA] [GO:2000761 "positive
            regulation of N-terminal peptidyl-lysine acetylation" evidence=ISO]
            InterPro:IPR009071 MGI:MGI:98366 Pfam:PF00505 GO:GO:0005739
            GO:GO:0005634 GO:GO:0043066 GO:GO:0008285 GO:GO:0050821
            GO:GO:0006977 GO:GO:0071333 GO:GO:0008284 GO:GO:0032024
            GO:GO:0001077 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0043065 GO:GO:0021522 GO:GO:0014009
            GO:GO:0001501 GO:GO:0003289 GO:GO:0003183 GO:GO:0035019
            GO:GO:0060993 GO:GO:0031018 GO:GO:0045727 GO:GO:0090263
            GO:GO:0001105 GO:GO:0048485 GO:GO:0060070 GO:GO:0031397
            GO:GO:0060563 GO:GO:0046826 GO:GO:0001046 GO:GO:0030217
            GO:GO:0001841 EMBL:CH466561 GO:GO:0060412 GO:GO:0060174
            GO:GO:0042769 GO:GO:0002328 GO:GO:0003215 GO:GO:0021782
            GO:GO:0003357 GO:GO:0035910 GO:GO:0003211 HOVERGEN:HBG005040
            KO:K09268 InterPro:IPR017386 PIRSF:PIRSF038098 HOGENOM:HOG000231874
            GeneTree:ENSGT00690000101789 CTD:6659 OMA:AGCSPDG ChiTaRS:SOX4
            GO:GO:2000761 EMBL:X70298 EMBL:AL606511 EMBL:BC052736 EMBL:U70440
            IPI:IPI00320363 PIR:S37303 RefSeq:NP_033264.2 UniGene:Mm.240627
            UniGene:Mm.455819 PDB:3U2B PDBsum:3U2B ProteinModelPortal:Q06831
            SMR:Q06831 IntAct:Q06831 STRING:Q06831 PhosphoSite:Q06831
            PRIDE:Q06831 Ensembl:ENSMUST00000067230 GeneID:20677 KEGG:mmu:20677
            InParanoid:Q5SW95 NextBio:299169 Bgee:Q06831 CleanEx:MM_SOX4
            Genevestigator:Q06831 Uniprot:Q06831
        Length = 440

 Score = 100 (40.3 bits), Expect = 0.00017, P = 0.00017
 Identities = 24/94 (25%), Positives = 48/94 (51%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  E  P+  + A + K  G++WK + + +K PF++ AE+ +  +  +
Sbjct:    64 NAFMVWSQIERRKIMEQSPDMHN-AEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMAD 122

Query:   105 MQDYN----KQLADGVNAAEENESDKSKSEVNDE 134
               DY     K++  G NA   + +     E  D+
Sbjct:   123 YPDYKYRPRKKVKSG-NAGAGSAATAKPGEKGDK 155


>FB|FBgn0024288 [details] [associations]
            symbol:Sox100B "Sox100B" species:7227 "Drosophila
            melanogaster" [GO:0005634 "nucleus" evidence=ISS] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0008301 "DNA binding, bending"
            evidence=ISS] [GO:0008584 "male gonad development"
            evidence=IMP;IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0008584
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            InterPro:IPR022151 Pfam:PF12444 HSSP:P48432 EMBL:AJ251580
            ProteinModelPortal:Q9VA16 SMR:Q9VA16 STRING:Q9VA16
            FlyBase:FBgn0024288 InParanoid:Q9VA16 OrthoDB:EOG4Q83CZ Bgee:Q9VA16
            Uniprot:Q9VA16
        Length = 529

 Score = 101 (40.6 bits), Expect = 0.00017, P = 0.00017
 Identities = 19/67 (28%), Positives = 40/67 (59%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R+   + +P+ ++ + + K+ G+ WK++ + +K PF+E AEK +  + + 
Sbjct:    82 NAFMVWAQAARRVMSKQYPHLQN-SELSKSLGKLWKNLKDSDKKPFMEFAEKLRMTHKQE 140

Query:   105 MQDYNKQ 111
               DY  Q
Sbjct:   141 HPDYKYQ 147


>RGD|1564760 [details] [associations]
            symbol:Hmg20a "high mobility group 20A" species:10116 "Rattus
            norvegicus" [GO:0000122 "negative regulation of transcription from
            RNA polymerase II promoter" evidence=ISO] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0016568 "chromatin modification" evidence=ISO]
            [GO:0045665 "negative regulation of neuron differentiation"
            evidence=ISO] [GO:0046982 "protein heterodimerization activity"
            evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR009071 Pfam:PF00505 RGD:1564760 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 IPI:IPI00565616
            Ensembl:ENSRNOT00000022903 UCSC:RGD:1564760 ArrayExpress:D3Z9E3
            Uniprot:D3Z9E3
        Length = 376

 Score = 99 (39.9 bits), Expect = 0.00017, P = 0.00017
 Identities = 22/84 (26%), Positives = 39/84 (46%)

Query:    50 FMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109
             FM E R+Q +   P       + +  G +W  +  +EK  +++ A++ K  Y K ++ Y 
Sbjct:   113 FMNERREQLRAKRPE-VPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQ 171

Query:   110 KQLADGVNAAEENESDKSKSEVND 133
             K  A  V + +  +  K KS   D
Sbjct:   172 KTEAYKVFSRKTQDRQKGKSHRQD 195


>UNIPROTKB|Q8AWH3 [details] [associations]
            symbol:sox17a "Transcription factor Sox-17-alpha"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus"
            evidence=ISS] [GO:0007492 "endoderm development" evidence=ISS]
            [GO:0008013 "beta-catenin binding" evidence=ISS] [GO:0043565
            "sequence-specific DNA binding" evidence=ISS] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISS] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005634 GO:GO:0016055 GO:GO:0043565
            GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0070121 GO:GO:0008013
            GO:GO:0007492 GO:GO:0007369 GO:GO:0061371 HSSP:P48431
            eggNOG:NOG242943 KO:K04495 InterPro:IPR021934 Pfam:PF12067
            PROSITE:PS51516 GeneTree:ENSGT00670000097649 HOGENOM:HOG000069999
            OrthoDB:EOG4KD6M5 EMBL:AY157635 EMBL:AC148408 EMBL:CR848309
            EMBL:BC074527 RefSeq:NP_989425.1 UniGene:Str.114
            ProteinModelPortal:Q8AWH3 SMR:Q8AWH3 STRING:Q8AWH3
            Ensembl:ENSXETT00000053697 GeneID:395066 KEGG:xtr:395066 CTD:395066
            Xenbase:XB-GENE-484295 InParanoid:Q8AWH3 OMA:FNGHEAN Bgee:Q8AWH3
            GO:GO:0035469 Uniprot:Q8AWH3
        Length = 383

 Score = 99 (39.9 bits), Expect = 0.00018, P = 0.00018
 Identities = 22/64 (34%), Positives = 40/64 (62%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ ++ RK+  + +P+  + A + K  G+ WK+++  EK PFVE AE+ +  +   
Sbjct:    66 NAFMVWAKDERKRLAQQNPDLHN-AELSKMLGKSWKALTLAEKRPFVEEAERLRVQH--- 121

Query:   105 MQDY 108
             MQD+
Sbjct:   122 MQDH 125


>UNIPROTKB|O00570 [details] [associations]
            symbol:SOX1 "Transcription factor SOX-1" species:9606 "Homo
            sapiens" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0001764 "neuron migration" evidence=IEA] [GO:0002089 "lens
            morphogenesis in camera-type eye" evidence=IEA] [GO:0021521
            "ventral spinal cord interneuron specification" evidence=IEA]
            [GO:0021884 "forebrain neuron development" evidence=IEA]
            [GO:0005634 "nucleus" evidence=NAS] [GO:0003677 "DNA binding"
            evidence=NAS] [GO:0006325 "chromatin organization" evidence=NAS]
            [GO:0001046 "core promoter sequence-specific DNA binding"
            evidence=IDA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=NAS] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=NAS]
            [GO:0005515 "protein binding" evidence=IPI] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005634 GO:GO:0003700 GO:GO:0006351
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            EMBL:CH471085 GO:GO:0006325 GO:GO:0001046 eggNOG:NOG321816
            HOGENOM:HOG000231647 KO:K09267 InterPro:IPR022097 Pfam:PF12336
            HOVERGEN:HBG105663 OMA:MHRYDMT CTD:6656 EMBL:Y13436 EMBL:AL138691
            IPI:IPI00012162 RefSeq:NP_005977.2 UniGene:Hs.202526
            ProteinModelPortal:O00570 SMR:O00570 IntAct:O00570 STRING:O00570
            PhosphoSite:O00570 PRIDE:O00570 Ensembl:ENST00000330949 GeneID:6656
            KEGG:hsa:6656 UCSC:uc001vsb.1 GeneCards:GC13P112721 HGNC:HGNC:11189
            MIM:602148 neXtProt:NX_O00570 PharmGKB:PA36026 InParanoid:O00570
            OrthoDB:EOG4DFPQ1 PhylomeDB:O00570 GenomeRNAi:6656 NextBio:25947
            Bgee:O00570 CleanEx:HS_SOX1 Genevestigator:O00570
            GermOnline:ENSG00000182968 Uniprot:O00570
        Length = 391

 Score = 99 (39.9 bits), Expect = 0.00018, P = 0.00018
 Identities = 20/64 (31%), Positives = 37/64 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    R++  + +P   + + + K  G +WK MSE EK PF++ A++ ++ + K 
Sbjct:    56 NAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKE 114

Query:   105 MQDY 108
               DY
Sbjct:   115 HPDY 118


>UNIPROTKB|Q2PG84 [details] [associations]
            symbol:sox1 "Transcription factor Sox-1" species:8355
            "Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0007399
            "nervous system development" evidence=IMP] [GO:0051091 "positive
            regulation of sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISS] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005634 GO:GO:0007399 GO:GO:0051091
            GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 KO:K09267 InterPro:IPR022097
            Pfam:PF12336 CTD:6656 EMBL:AB219572 EMBL:EF672727 EMBL:EF192051
            EMBL:BC169643 RefSeq:NP_001089143.1 UniGene:Xl.55964
            ProteinModelPortal:Q2PG84 SMR:Q2PG84 GeneID:734174 KEGG:xla:734174
            Xenbase:XB-GENE-1018276 Uniprot:Q2PG84
        Length = 393

 Score = 99 (39.9 bits), Expect = 0.00018, P = 0.00018
 Identities = 20/64 (31%), Positives = 37/64 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    R++  + +P   + + + K  G +WK MSE EK PF++ A++ ++ + K 
Sbjct:    39 NAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKE 97

Query:   105 MQDY 108
               DY
Sbjct:    98 HPDY 101


>RGD|1586313 [details] [associations]
            symbol:Sox12 "SRY (sex determining region Y)-box 12"
            species:10116 "Rattus norvegicus" [GO:0000976 "transcription
            regulatory region sequence-specific DNA binding" evidence=ISO;ISS]
            [GO:0001077 "RNA polymerase II core promoter proximal region
            sequence-specific DNA binding transcription factor activity
            involved in positive regulation of transcription" evidence=ISO;ISS]
            [GO:0001105 "RNA polymerase II transcription coactivator activity"
            evidence=ISO;ISS] [GO:0021510 "spinal cord development"
            evidence=ISO;ISS] [GO:0032993 "protein-DNA complex"
            evidence=IEA;ISO] [GO:0045165 "cell fate commitment"
            evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISO;ISS] [GO:0065004
            "protein-DNA complex assembly" evidence=IEA;ISO] InterPro:IPR009071
            Pfam:PF00505 RGD:1586313 GO:GO:0001077 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0021510
            GO:GO:0000976 GO:GO:0001105 GO:GO:0045165 GO:GO:0032993
            GO:GO:0065004 KO:K09268 InterPro:IPR017386 PIRSF:PIRSF038098
            GeneTree:ENSGT00690000101789 CTD:6666 OrthoDB:EOG41VK47
            IPI:IPI00368815 RefSeq:NP_001162121.1 UniGene:Rn.224641
            PRIDE:D3ZZ13 Ensembl:ENSRNOT00000009852 GeneID:689988
            KEGG:rno:689988 UCSC:RGD:1586313 NextBio:739931 Uniprot:D3ZZ13
        Length = 314

 Score = 93 (37.8 bits), Expect = 0.00019, Sum P(2) = 0.00019
 Identities = 20/64 (31%), Positives = 36/64 (56%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  +  P+  + A + K  G +W+ + + EK PFV  AE+ +    K+
Sbjct:    45 NAFMVWSQHERRKIMDQWPDMHN-AEISKRLGRRWQLLQDSEKIPFVREAERLRL---KH 100

Query:   105 MQDY 108
             M DY
Sbjct:   101 MADY 104

 Score = 38 (18.4 bits), Expect = 0.00019, Sum P(2) = 0.00019
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query:   120 EENESDKSKSEVNDEDDEE--GSGEVFLQLLT 149
             EE E ++ ++   +E +EE   SGE  L  L+
Sbjct:   224 EEPEEEEEEAATAEEGEEETVASGEEPLGFLS 255

 Score = 34 (17.0 bits), Expect = 0.00048, Sum P(2) = 0.00048
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query:   130 EVNDEDDEEGSGEVFL 145
             E +DED+EE   EV L
Sbjct:   163 EDDDEDEEEELLEVRL 178


>UNIPROTKB|A2TED3 [details] [associations]
            symbol:sox1 "Transcription factor Sox-1" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus" evidence=ISS]
            [GO:0007399 "nervous system development" evidence=ISS] [GO:0051091
            "positive regulation of sequence-specific DNA binding transcription
            factor activity" evidence=ISS] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=ISS]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0007399
            GO:GO:0051091 GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 eggNOG:NOG321816
            HOGENOM:HOG000231647 KO:K09267 InterPro:IPR022097 Pfam:PF12336
            CTD:6656 EMBL:EF192052 EMBL:BC121846 EMBL:BC159121
            RefSeq:NP_001074465.1 UniGene:Str.35422 ProteinModelPortal:A2TED3
            SMR:A2TED3 STRING:A2TED3 GeneID:779569 KEGG:xtr:779569
            Xenbase:XB-GENE-1018269 Uniprot:A2TED3
        Length = 401

 Score = 99 (39.9 bits), Expect = 0.00019, P = 0.00019
 Identities = 20/64 (31%), Positives = 37/64 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    R++  + +P   + + + K  G +WK MSE EK PF++ A++ ++ + K 
Sbjct:    42 NAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKE 100

Query:   105 MQDY 108
               DY
Sbjct:   101 HPDY 104


>UNIPROTKB|E2RH58 [details] [associations]
            symbol:SOX12 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0001077 "RNA polymerase II core promoter
            proximal region sequence-specific DNA binding transcription factor
            activity involved in positive regulation of transcription"
            evidence=ISS] [GO:0001105 "RNA polymerase II transcription
            coactivator activity" evidence=ISS] [GO:0000976 "transcription
            regulatory region sequence-specific DNA binding" evidence=ISS]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISS] [GO:0021510 "spinal cord
            development" evidence=ISS] [GO:0065004 "protein-DNA complex
            assembly" evidence=IEA] [GO:0045165 "cell fate commitment"
            evidence=IEA] [GO:0032993 "protein-DNA complex" evidence=IEA]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0001077 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0021510
            GO:GO:0000976 GO:GO:0001105 GO:GO:0045165 GO:GO:0032993
            GO:GO:0065004 KO:K09268 InterPro:IPR017386 PIRSF:PIRSF038098
            GeneTree:ENSGT00690000101789 CTD:6666 OMA:VQQRGAR EMBL:AAEX03013862
            RefSeq:XP_542944.2 Ensembl:ENSCAFT00000011182 GeneID:485820
            KEGG:cfa:485820 NextBio:20859729 Uniprot:E2RH58
        Length = 321

 Score = 93 (37.8 bits), Expect = 0.00020, Sum P(2) = 0.00020
 Identities = 20/64 (31%), Positives = 36/64 (56%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  +  P+  + A + K  G +W+ + + EK PFV  AE+ +    K+
Sbjct:    45 NAFMVWSQHERRKIMDQWPDMHN-AEISKRLGRRWQLLQDSEKIPFVREAERLRL---KH 100

Query:   105 MQDY 108
             M DY
Sbjct:   101 MADY 104

 Score = 38 (18.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query:   120 EENESDKSKSEVNDEDDEE--GSGEVFLQLLT 149
             EE E ++ ++   +E +EE   SGE  L  L+
Sbjct:   231 EEPEEEEEEAAAAEEGEEETVASGEEPLGFLS 262

 Score = 35 (17.4 bits), Expect = 0.00041, Sum P(2) = 0.00041
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query:   130 EVNDEDDEEGSGEVFL 145
             E +DEDD+E   EV L
Sbjct:   170 EDDDEDDDEELLEVRL 185


>MGI|MGI:107543 [details] [associations]
            symbol:Sox17 "SRY-box containing gene 17" species:10090 "Mus
            musculus" [GO:0000122 "negative regulation of transcription from
            RNA polymerase II promoter" evidence=IMP] [GO:0001525
            "angiogenesis" evidence=IGI] [GO:0001570 "vasculogenesis"
            evidence=IGI] [GO:0001706 "endoderm formation" evidence=ISO]
            [GO:0001828 "inner cell mass cellular morphogenesis" evidence=IMP]
            [GO:0001947 "heart looping" evidence=IMP] [GO:0003142 "cardiogenic
            plate morphogenesis" evidence=IMP] [GO:0003143 "embryonic heart
            tube morphogenesis" evidence=IMP] [GO:0003151 "outflow tract
            morphogenesis" evidence=IGI] [GO:0003308 "negative regulation of
            Wnt receptor signaling pathway involved in heart development"
            evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IDA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IDA] [GO:0003713 "transcription coactivator activity"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005667 "transcription
            factor complex" evidence=ISO] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IDA] [GO:0007283
            "spermatogenesis" evidence=IDA] [GO:0007369 "gastrulation"
            evidence=IMP] [GO:0007492 "endoderm development" evidence=IMP]
            [GO:0007493 "endodermal cell fate determination" evidence=IDA]
            [GO:0008013 "beta-catenin binding" evidence=ISO] [GO:0008134
            "transcription factor binding" evidence=ISO] [GO:0010628 "positive
            regulation of gene expression" evidence=IMP] [GO:0016055 "Wnt
            receptor signaling pathway" evidence=IEA] [GO:0021903 "rostrocaudal
            neural tube patterning" evidence=IMP] [GO:0023019 "signal
            transduction involved in regulation of gene expression"
            evidence=IDA] [GO:0030178 "negative regulation of Wnt receptor
            signaling pathway" evidence=IDA;IMP] [GO:0030308 "negative
            regulation of cell growth" evidence=ISO] [GO:0031648 "protein
            destabilization" evidence=ISO] [GO:0035050 "embryonic heart tube
            development" evidence=IGI] [GO:0042074 "cell migration involved in
            gastrulation" evidence=IMP] [GO:0042661 "regulation of mesodermal
            cell fate specification" evidence=IMP] [GO:0042662 "negative
            regulation of mesodermal cell fate specification" evidence=IMP]
            [GO:0042789 "mRNA transcription from RNA polymerase II promoter"
            evidence=ISO] [GO:0043565 "sequence-specific DNA binding"
            evidence=IDA] [GO:0044212 "transcription regulatory region DNA
            binding" evidence=IDA] [GO:0045595 "regulation of cell
            differentiation" evidence=IMP] [GO:0045597 "positive regulation of
            cell differentiation" evidence=IMP;IDA] [GO:0045732 "positive
            regulation of protein catabolic process" evidence=IDA] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISO;IDA] [GO:0045995 "regulation
            of embryonic development" evidence=IMP] [GO:0048568 "embryonic
            organ development" evidence=IMP] [GO:0048617 "embryonic foregut
            morphogenesis" evidence=IMP] [GO:0048643 "positive regulation of
            skeletal muscle tissue development" evidence=IDA] [GO:0048863 "stem
            cell differentiation" evidence=IMP] [GO:0048866 "stem cell fate
            specification" evidence=IDA] [GO:0050821 "protein stabilization"
            evidence=ISO] [GO:0060070 "canonical Wnt receptor signaling
            pathway" evidence=IDA] [GO:0060214 "endocardium formation"
            evidence=IGI] [GO:0060807 "regulation of transcription from RNA
            polymerase II promoter involved in definitive endodermal cell fate
            specification" evidence=IMP] [GO:0060913 "cardiac cell fate
            determination" evidence=ISO] [GO:0060956 "endocardial cell
            differentiation" evidence=IGI] [GO:0061009 "common bile duct
            development" evidence=IMP] [GO:0061010 "gall bladder development"
            evidence=IMP] [GO:0061031 "endodermal digestive tract
            morphogenesis" evidence=IMP] [GO:0072001 "renal system development"
            evidence=ISO] [GO:0072091 "regulation of stem cell proliferation"
            evidence=IDA] [GO:0090090 "negative regulation of canonical Wnt
            receptor signaling pathway" evidence=ISO] [GO:2000035 "regulation
            of stem cell division" evidence=IMP] [GO:2000043 "regulation of
            cardiac cell fate specification" evidence=IMP] InterPro:IPR009071
            MGI:MGI:107543 Pfam:PF00505 GO:GO:0005634 GO:GO:0050821
            GO:GO:0030308 GO:GO:0043565 GO:GO:0045597 GO:GO:0045944
            GO:GO:0007283 GO:GO:0001525 GO:GO:0005667 GO:GO:0003705
            GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0044212 GO:GO:0003713 GO:GO:0001570
            GO:GO:0090090 GO:GO:0001947 GO:GO:0045732 GO:GO:0042074
            GO:GO:0003151 GO:GO:0060070 GO:GO:0048617 GO:GO:0021903
            GO:GO:0003308 GO:GO:0031648 GO:GO:0048568 GO:GO:0023019
            GO:GO:0048643 GO:GO:2000035 GO:GO:0042662 GO:GO:0072001
            GO:GO:0007493 GO:GO:0072091 GO:GO:0061031 GO:GO:0061009
            GO:GO:0061010 GO:GO:0060913 GO:GO:0060956 GO:GO:0060214
            eggNOG:NOG242943 KO:K04495 InterPro:IPR021934 Pfam:PF12067
            PROSITE:PS51516 GeneTree:ENSGT00670000097649 CTD:64321
            HOGENOM:HOG000069999 HOVERGEN:HBG000517 OMA:ALPCRDG
            OrthoDB:EOG4KD6M5 GO:GO:0003142 GO:GO:0001828 GO:GO:2000043
            GO:GO:0060807 GO:GO:0048866 EMBL:D49474 EMBL:D49473 EMBL:AK004781
            EMBL:L29085 IPI:IPI00121298 IPI:IPI00230012 RefSeq:NP_035571.1
            UniGene:Mm.279103 PDB:3F27 PDBsum:3F27 ProteinModelPortal:Q61473
            SMR:Q61473 STRING:Q61473 PhosphoSite:Q61473 PRIDE:Q61473
            DNASU:20671 Ensembl:ENSMUST00000027035 Ensembl:ENSMUST00000116652
            GeneID:20671 KEGG:mmu:20671 UCSC:uc007aey.1 UCSC:uc007afb.1
            InParanoid:Q61473 NextBio:299151 Bgee:Q61473 CleanEx:MM_SOX17
            Genevestigator:Q61473 GermOnline:ENSMUSG00000025902 Uniprot:Q61473
        Length = 419

 Score = 99 (39.9 bits), Expect = 0.00020, P = 0.00020
 Identities = 22/64 (34%), Positives = 40/64 (62%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ ++ RK+  + +P+  + A + K  G+ WK+++  EK PFVE AE+ +  +   
Sbjct:    73 NAFMVWAKDERKRLAQQNPDLHN-AELSKMLGKSWKALTLAEKRPFVEEAERLRVQH--- 128

Query:   105 MQDY 108
             MQD+
Sbjct:   129 MQDH 132


>UNIPROTKB|A4QNG3 [details] [associations]
            symbol:sox14 "Transcription factor Sox-14" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0007399 "nervous system development" evidence=ISS] [GO:0043565
            "sequence-specific DNA binding" evidence=ISS] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=ISS]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0007399
            GO:GO:0043565 GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0021854
            GeneTree:ENSGT00690000101940 CTD:8403 eggNOG:NOG302715
            HOGENOM:HOG000231647 KO:K09267 OMA:LGCPSQH EMBL:AM922298
            EMBL:BC135637 RefSeq:NP_001093703.1 UniGene:Str.72434
            ProteinModelPortal:A4QNG3 SMR:A4QNG3 STRING:A4QNG3
            Ensembl:ENSXETT00000049107 GeneID:100101715 KEGG:xtr:100101715
            Xenbase:XB-GENE-485370 Bgee:A4QNG3 Uniprot:A4QNG3
        Length = 239

 Score = 97 (39.2 bits), Expect = 0.00025, P = 0.00025
 Identities = 18/64 (28%), Positives = 37/64 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    R++  + +P   + + + K  G +WK +SE EK P+++ A++ ++ + K 
Sbjct:    13 NAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKE 71

Query:   105 MQDY 108
               DY
Sbjct:    72 HPDY 75


>UNIPROTKB|B0ZTE2 [details] [associations]
            symbol:sox14 "Transcription factor Sox-14" species:8355
            "Xenopus laevis" [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0007399 "nervous
            system development" evidence=IEP] [GO:0043565 "sequence-specific
            DNA binding" evidence=ISS] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=ISS] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005634 GO:GO:0007399 GO:GO:0043565
            GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 CTD:8403 KO:K09267 EMBL:EU403425
            RefSeq:NP_001165685.1 UniGene:Xl.85736 ProteinModelPortal:B0ZTE2
            SMR:B0ZTE2 GeneID:100337614 KEGG:xla:100337614
            Xenbase:XB-GENE-6458188 Uniprot:B0ZTE2
        Length = 239

 Score = 97 (39.2 bits), Expect = 0.00025, P = 0.00025
 Identities = 18/64 (28%), Positives = 37/64 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    R++  + +P   + + + K  G +WK +SE EK P+++ A++ ++ + K 
Sbjct:    13 NAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKE 71

Query:   105 MQDY 108
               DY
Sbjct:    72 HPDY 75


>UNIPROTKB|Q9W7R6 [details] [associations]
            symbol:SOX14 "Transcription factor SOX-14" species:9031
            "Gallus gallus" [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=IDA] [GO:0045892
            "negative regulation of transcription, DNA-dependent" evidence=IDA]
            [GO:0043565 "sequence-specific DNA binding" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IC] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0043565 GO:GO:0006351 GO:GO:0000122
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            EMBL:AB026622 EMBL:AF193760 EMBL:M86326 IPI:IPI00585113 PIR:I50196
            RefSeq:NP_990092.1 UniGene:Gga.286 ProteinModelPortal:Q9W7R6
            SMR:Q9W7R6 STRING:Q9W7R6 GeneID:395526 KEGG:gga:395526 CTD:8403
            eggNOG:NOG302715 HOGENOM:HOG000231647 HOVERGEN:HBG105618
            InParanoid:Q9W7R6 KO:K09267 OrthoDB:EOG47D9H0 NextBio:20815603
            InterPro:IPR022097 Pfam:PF12336 Uniprot:Q9W7R6
        Length = 240

 Score = 97 (39.2 bits), Expect = 0.00025, P = 0.00025
 Identities = 18/64 (28%), Positives = 37/64 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    R++  + +P   + + + K  G +WK +SE EK P+++ A++ ++ + K 
Sbjct:    13 NAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKE 71

Query:   105 MQDY 108
               DY
Sbjct:    72 HPDY 75


>UNIPROTKB|O95416 [details] [associations]
            symbol:SOX14 "Transcription factor SOX-14" species:9606
            "Homo sapiens" [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007399
            "nervous system development" evidence=TAS] [GO:0005575
            "cellular_component" evidence=ND] [GO:0000122 "negative regulation
            of transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0045892 "negative regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
            evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            GO:GO:0007399 EMBL:CH471052 GO:GO:0043565 GO:GO:0006351
            GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 CTD:8403 eggNOG:NOG302715 HOGENOM:HOG000231647
            HOVERGEN:HBG105618 KO:K09267 OrthoDB:EOG47D9H0 InterPro:IPR022097
            Pfam:PF12336 OMA:LGCPSQH EMBL:AF107043 EMBL:AJ006230 EMBL:AF193436
            EMBL:AK314127 EMBL:BC106729 EMBL:BC106730 EMBL:AF032451
            IPI:IPI00030676 RefSeq:NP_004180.1 UniGene:Hs.248184
            ProteinModelPortal:O95416 SMR:O95416 STRING:O95416
            PhosphoSite:O95416 PRIDE:O95416 Ensembl:ENST00000306087 GeneID:8403
            KEGG:hsa:8403 UCSC:uc003erm.2 GeneCards:GC03P137483 HGNC:HGNC:11193
            MIM:604747 neXtProt:NX_O95416 PharmGKB:PA36030 InParanoid:O95416
            PhylomeDB:O95416 GenomeRNAi:8403 NextBio:31446 Bgee:O95416
            CleanEx:HS_SOX14 Genevestigator:O95416 GermOnline:ENSG00000168875
            Uniprot:O95416
        Length = 240

 Score = 97 (39.2 bits), Expect = 0.00025, P = 0.00025
 Identities = 18/64 (28%), Positives = 37/64 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    R++  + +P   + + + K  G +WK +SE EK P+++ A++ ++ + K 
Sbjct:    13 NAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKE 71

Query:   105 MQDY 108
               DY
Sbjct:    72 HPDY 75


>UNIPROTKB|P61259 [details] [associations]
            symbol:SOX14 "Transcription factor SOX-14" species:9541
            "Macaca fascicularis" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0043565 "sequence-specific DNA binding" evidence=ISS]
            [GO:0045892 "negative regulation of transcription, DNA-dependent"
            evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            GO:GO:0043565 GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 HOVERGEN:HBG105618
            InterPro:IPR022097 Pfam:PF12336 EMBL:AB063098
            ProteinModelPortal:P61259 SMR:P61259 Uniprot:P61259
        Length = 240

 Score = 97 (39.2 bits), Expect = 0.00025, P = 0.00025
 Identities = 18/64 (28%), Positives = 37/64 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    R++  + +P   + + + K  G +WK +SE EK P+++ A++ ++ + K 
Sbjct:    13 NAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKE 71

Query:   105 MQDY 108
               DY
Sbjct:    72 HPDY 75


>MGI|MGI:98362 [details] [associations]
            symbol:Sox14 "SRY-box containing gene 14" species:10090 "Mus
            musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0003677
            "DNA binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR009071
            MGI:MGI:98362 Pfam:PF00505 GO:GO:0005634 GO:GO:0043565
            GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 CTD:8403 eggNOG:NOG302715
            HOVERGEN:HBG105618 KO:K09267 OrthoDB:EOG47D9H0 OMA:LGCPSQH
            EMBL:AF193437 EMBL:AF193435 EMBL:AF182357 EMBL:Z18963
            IPI:IPI00929882 PIR:S30244 RefSeq:NP_035570.1 UniGene:Mm.261595
            UniGene:Mm.484077 ProteinModelPortal:Q04892 SMR:Q04892
            STRING:Q04892 PhosphoSite:Q04892 PRIDE:Q04892
            Ensembl:ENSMUST00000054819 GeneID:20669 KEGG:mmu:20669
            InParanoid:Q04892 NextBio:299141 Bgee:Q04892 CleanEx:MM_SOX14
            Genevestigator:Q04892 Uniprot:Q04892
        Length = 240

 Score = 97 (39.2 bits), Expect = 0.00025, P = 0.00025
 Identities = 18/64 (28%), Positives = 37/64 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    R++  + +P   + + + K  G +WK +SE EK P+++ A++ ++ + K 
Sbjct:    13 NAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKE 71

Query:   105 MQDY 108
               DY
Sbjct:    72 HPDY 75


>RGD|1309654 [details] [associations]
            symbol:Sox14 "SRY (sex determining region Y)-box 14"
            species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR009071
            Pfam:PF00505 RGD:1309654 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CH473954 CTD:8403
            HOVERGEN:HBG105618 KO:K09267 OMA:LGCPSQH EMBL:EU853677
            IPI:IPI00870866 RefSeq:NP_001100320.1 UniGene:Rn.141574 SMR:B7SZV3
            GeneID:300954 KEGG:rno:300954 UCSC:RGD:1309654 NextBio:647780
            Genevestigator:B7SZV3 Uniprot:B7SZV3
        Length = 240

 Score = 97 (39.2 bits), Expect = 0.00025, P = 0.00025
 Identities = 18/64 (28%), Positives = 37/64 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    R++  + +P   + + + K  G +WK +SE EK P+++ A++ ++ + K 
Sbjct:    13 NAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKE 71

Query:   105 MQDY 108
               DY
Sbjct:    72 HPDY 75


>ZFIN|ZDB-GENE-991213-1 [details] [associations]
            symbol:sox17 "SRY-box containing gene 17"
            species:7955 "Danio rerio" [GO:0070121 "Kupffer's vesicle
            development" evidence=IMP] [GO:0061371 "determination of heart
            left/right asymmetry" evidence=IMP] [GO:0035469 "determination of
            pancreatic left/right asymmetry" evidence=IMP] InterPro:IPR009071
            Pfam:PF00505 ZFIN:ZDB-GENE-991213-1 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0070121 GO:GO:0061371
            HSSP:P48432 HOVERGEN:HBG000517 GO:GO:0035469 EMBL:AF168614
            IPI:IPI00490847 UniGene:Dr.81308 ProteinModelPortal:Q9PTN0
            SMR:Q9PTN0 STRING:Q9PTN0 InParanoid:Q9PTN0 ArrayExpress:Q9PTN0
            Uniprot:Q9PTN0
        Length = 413

 Score = 98 (39.6 bits), Expect = 0.00026, P = 0.00026
 Identities = 22/64 (34%), Positives = 40/64 (62%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ ++ RK+  + +P+  + A + K  G+ WK++   +K PFVE AE+ +    K+
Sbjct:    68 NAFMVWAKDERKRLAQQNPDLHN-AELSKMLGKSWKALPMVDKRPFVEEAERLRV---KH 123

Query:   105 MQDY 108
             MQD+
Sbjct:   124 MQDH 127


>ZFIN|ZDB-GENE-040429-1 [details] [associations]
            symbol:sox21b "SRY-box containing gene 21 b"
            species:7955 "Danio rerio" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0043565 "sequence-specific DNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            ZFIN:ZDB-GENE-040429-1 GO:GO:0005634 GO:GO:0043565 GO:GO:0006351
            GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GeneTree:ENSGT00690000101940 HSSP:P48431
            eggNOG:NOG302715 HOGENOM:HOG000231647 KO:K09267 InterPro:IPR022097
            Pfam:PF12336 OrthoDB:EOG40K80Q OMA:KPKTLMK EMBL:AY489186
            EMBL:CT027987 EMBL:BC095366 IPI:IPI00492387 RefSeq:NP_001009888.1
            UniGene:Dr.116538 ProteinModelPortal:Q6RVD7 SMR:Q6RVD7
            STRING:Q6RVD7 PRIDE:Q6RVD7 Ensembl:ENSDART00000003310 GeneID:406246
            KEGG:dre:406246 CTD:406246 InParanoid:Q6RVD7 NextBio:20817881
            Bgee:Q6RVD7 Uniprot:Q6RVD7
        Length = 245

 Score = 97 (39.2 bits), Expect = 0.00026, P = 0.00026
 Identities = 18/64 (28%), Positives = 37/64 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    R++  + +P   + + + K  G +WK ++E EK PF++ A++ ++ + K 
Sbjct:    13 NAFMVWSRAQRRKMAQENPKMHN-SEISKRLGAEWKLLTESEKRPFIDEAKRLRAMHMKE 71

Query:   105 MQDY 108
               DY
Sbjct:    72 HPDY 75


>UNIPROTKB|E2RLZ6 [details] [associations]
            symbol:SOX4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:2000761 "positive regulation of N-terminal
            peptidyl-lysine acetylation" evidence=IEA] [GO:0090263 "positive
            regulation of canonical Wnt receptor signaling pathway"
            evidence=IEA] [GO:0071333 "cellular response to glucose stimulus"
            evidence=IEA] [GO:0060993 "kidney morphogenesis" evidence=IEA]
            [GO:0060563 "neuroepithelial cell differentiation" evidence=IEA]
            [GO:0060412 "ventricular septum morphogenesis" evidence=IEA]
            [GO:0060174 "limb bud formation" evidence=IEA] [GO:0060070
            "canonical Wnt receptor signaling pathway" evidence=IEA]
            [GO:0050821 "protein stabilization" evidence=IEA] [GO:0048485
            "sympathetic nervous system development" evidence=IEA] [GO:0046826
            "negative regulation of protein export from nucleus" evidence=IEA]
            [GO:0045727 "positive regulation of translation" evidence=IEA]
            [GO:0043066 "negative regulation of apoptotic process"
            evidence=IEA] [GO:0043065 "positive regulation of apoptotic
            process" evidence=IEA] [GO:0042769 "DNA damage response, detection
            of DNA damage" evidence=IEA] [GO:0035910 "ascending aorta
            morphogenesis" evidence=IEA] [GO:0035019 "somatic stem cell
            maintenance" evidence=IEA] [GO:0032024 "positive regulation of
            insulin secretion" evidence=IEA] [GO:0031397 "negative regulation
            of protein ubiquitination" evidence=IEA] [GO:0031018 "endocrine
            pancreas development" evidence=IEA] [GO:0030217 "T cell
            differentiation" evidence=IEA] [GO:0021782 "glial cell development"
            evidence=IEA] [GO:0021522 "spinal cord motor neuron
            differentiation" evidence=IEA] [GO:0014009 "glial cell
            proliferation" evidence=IEA] [GO:0008285 "negative regulation of
            cell proliferation" evidence=IEA] [GO:0008284 "positive regulation
            of cell proliferation" evidence=IEA] [GO:0006977 "DNA damage
            response, signal transduction by p53 class mediator resulting in
            cell cycle arrest" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003357
            "noradrenergic neuron differentiation" evidence=IEA] [GO:0003289
            "atrial septum primum morphogenesis" evidence=IEA] [GO:0003215
            "cardiac right ventricle morphogenesis" evidence=IEA] [GO:0003211
            "cardiac ventricle formation" evidence=IEA] [GO:0003183 "mitral
            valve morphogenesis" evidence=IEA] [GO:0002328 "pro-B cell
            differentiation" evidence=IEA] [GO:0001841 "neural tube formation"
            evidence=IEA] [GO:0001501 "skeletal system development"
            evidence=IEA] [GO:0001105 "RNA polymerase II transcription
            coactivator activity" evidence=IEA] [GO:0001077 "RNA polymerase II
            core promoter proximal region sequence-specific DNA binding
            transcription factor activity involved in positive regulation of
            transcription" evidence=IEA] [GO:0001046 "core promoter
            sequence-specific DNA binding" evidence=IEA] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005739 GO:GO:0005634 GO:GO:0043066
            GO:GO:0008285 GO:GO:0050821 GO:GO:0006977 GO:GO:0071333
            GO:GO:0008284 GO:GO:0045944 GO:GO:0032024 GO:GO:0001077
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0043065 GO:GO:0021522 GO:GO:0014009 GO:GO:0001501
            GO:GO:0003289 GO:GO:0003183 GO:GO:0035019 GO:GO:0060993
            GO:GO:0031018 GO:GO:0045727 GO:GO:0090263 GO:GO:0001105
            GO:GO:0048485 GO:GO:0060070 GO:GO:0031397 GO:GO:0060563
            GO:GO:0046826 GO:GO:0001046 GO:GO:0030217 GO:GO:0001841
            GO:GO:0060412 GO:GO:0060174 GO:GO:0042769 GO:GO:0002328
            GO:GO:0003215 GO:GO:0021782 GO:GO:0003357 GO:GO:0035910
            GO:GO:0003211 InterPro:IPR017386 PIRSF:PIRSF038098
            GeneTree:ENSGT00690000101789 OMA:AGCSPDG GO:GO:2000761
            EMBL:AAEX03017587 EMBL:AAEX03017588 EMBL:AAEX03017589
            Ensembl:ENSCAFT00000038483 Uniprot:E2RLZ6
        Length = 356

 Score = 95 (38.5 bits), Expect = 0.00029, Sum P(2) = 0.00029
 Identities = 20/64 (31%), Positives = 37/64 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  E  P+  + A + K  G++WK + + +K PF+  AE+ +    K+
Sbjct:    64 NAFMVWSQIERRKIMEQSPDMHN-AEISKRLGKRWKLLQDSDKIPFIREAERLRL---KH 119

Query:   105 MQDY 108
             M DY
Sbjct:   120 MADY 123

 Score = 33 (16.7 bits), Expect = 0.00029, Sum P(2) = 0.00029
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query:   117 NAAEENESDKSKSEVNDEDDE 137
             +A+  + S  S S  +  DDE
Sbjct:   262 HASSSHSSSSSSSGSSSSDDE 282


>MGI|MGI:98360 [details] [associations]
            symbol:Sox12 "SRY-box containing gene 12" species:10090 "Mus
            musculus" [GO:0000976 "transcription regulatory region
            sequence-specific DNA binding" evidence=IDA] [GO:0001077 "RNA
            polymerase II core promoter proximal region sequence-specific DNA
            binding transcription factor activity involved in positive
            regulation of transcription" evidence=IDA] [GO:0001105 "RNA
            polymerase II transcription coactivator activity" evidence=IDA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0021510 "spinal cord development"
            evidence=IDA] [GO:0032993 "protein-DNA complex" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IDA] [GO:0065004 "protein-DNA
            complex assembly" evidence=IDA] InterPro:IPR009071 MGI:MGI:98360
            Pfam:PF00505 GO:GO:0005634 GO:GO:0001077 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0021510
            GO:GO:0000976 GO:GO:0001105 GO:GO:0045165 GO:GO:0032993
            GO:GO:0065004 EMBL:AL928568 KO:K09268 InterPro:IPR017386
            PIRSF:PIRSF038098 HOGENOM:HOG000231874 GeneTree:ENSGT00690000101789
            CTD:6666 eggNOG:NOG290369 HOVERGEN:HBG094895 OMA:VQQRGAR
            OrthoDB:EOG41VK47 EMBL:BC067019 EMBL:Z18961 EMBL:U70442
            IPI:IPI00111161 PIR:S30240 RefSeq:NP_035568.1 UniGene:Mm.28424
            ProteinModelPortal:Q04890 SMR:Q04890 STRING:Q04890
            PhosphoSite:Q04890 PRIDE:Q04890 Ensembl:ENSMUST00000063332
            GeneID:20667 KEGG:mmu:20667 UCSC:uc008nfi.1 InParanoid:A2AS82
            ChiTaRS:SOX12 NextBio:299133 Bgee:Q04890 CleanEx:MM_SOX12
            Genevestigator:Q04890 GermOnline:ENSMUSG00000051817 Uniprot:Q04890
        Length = 314

 Score = 93 (37.8 bits), Expect = 0.00030, Sum P(2) = 0.00030
 Identities = 20/64 (31%), Positives = 36/64 (56%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+ +  R++  +  P+  + A + K  G +W+ + + EK PFV  AE+ +    K+
Sbjct:    45 NAFMVWSQHERRKIMDQWPDMHN-AEISKRLGRRWQLLQDSEKIPFVREAERLRL---KH 100

Query:   105 MQDY 108
             M DY
Sbjct:   101 MADY 104

 Score = 36 (17.7 bits), Expect = 0.00030, Sum P(2) = 0.00030
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query:   120 EENESDKSKSEVNDEDDEEG--SGEVFLQLLT 149
             EE E ++ ++   +E +EE   SGE  L  L+
Sbjct:   224 EEPEEEEEEAATAEEGEEETVVSGEEPLGFLS 255

 Score = 34 (17.0 bits), Expect = 0.00048, Sum P(2) = 0.00048
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query:   130 EVNDEDDEEGSGEVFL 145
             E +DED+EE   EV L
Sbjct:   163 EDDDEDEEEELLEVRL 178


>DICTYBASE|DDB_G0280801 [details] [associations]
            symbol:DDB_G0280801 species:44689 "Dictyostelium
            discoideum" [GO:0044351 "macropinocytosis" evidence=RCA]
            dictyBase:DDB_G0280801 EMBL:AAFI02000038 RefSeq:XP_641037.1
            EnsemblProtists:DDB0204740 GeneID:8622739 KEGG:ddi:DDB_G0280801
            eggNOG:NOG125792 OMA:VLAPPNS Uniprot:Q54UV0
        Length = 1254

 Score = 97 (39.2 bits), Expect = 0.00033, Sum P(2) = 0.00033
 Identities = 26/89 (29%), Positives = 45/89 (50%)

Query:    59 KEAHPNNKSVAT--VGKAAGEKWKSMSEDEKAPFVE-RAEKRKSDYNKNMQDYNKQLADG 115
             ++    N+S A    G  AG   KS  +++++   E + E++K    K  Q  N+   + 
Sbjct:   596 QQQQQQNESFAGSFAGSFAGSSTKSSPQEQQSSSQEQKQEQQKQSSEKQEQKTNENKEEN 655

Query:   116 VNAAEENESDKSKSEVNDEDDEE--GSGE 142
             V   EEN  ++ K E  +E++EE  G+GE
Sbjct:   656 VKEEEENVKEEEKEEEEEEEEEEKVGAGE 684

 Score = 36 (17.7 bits), Expect = 0.00033, Sum P(2) = 0.00033
 Identities = 8/13 (61%), Positives = 8/13 (61%)

Query:     4 GRSKADAVGTDSK 16
             G  K D VG DSK
Sbjct:    46 GDDKNDKVGEDSK 58


>UNIPROTKB|Q9Y651 [details] [associations]
            symbol:SOX21 "Transcription factor SOX-21" species:9606
            "Homo sapiens" [GO:0001942 "hair follicle development"
            evidence=IEA] [GO:0043588 "skin development" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0048863 "stem cell
            differentiation" evidence=IDA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISS] [GO:0003677 "DNA
            binding" evidence=ISS] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISS] [GO:0005575
            "cellular_component" evidence=ND] [GO:0006357 "regulation of
            transcription from RNA polymerase II promoter" evidence=NAS]
            [GO:0000981 "sequence-specific DNA binding RNA polymerase II
            transcription factor activity" evidence=NAS] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=NAS]
            InterPro:IPR009071 EMBL:AF107044 Pfam:PF00505 GO:GO:0005634
            GO:GO:0043588 GO:GO:0003677 GO:GO:0048863 GO:GO:0045665
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            EMBL:CH471085 GO:GO:0001942 GO:GO:0000981 eggNOG:NOG302715
            HOGENOM:HOG000231647 HOVERGEN:HBG105618 KO:K09267
            InterPro:IPR022097 Pfam:PF12336 EMBL:AL137061 EMBL:X71136
            EMBL:X65666 IPI:IPI00001824 PIR:I38238 PIR:S22937
            RefSeq:NP_009015.1 UniGene:Hs.187577 ProteinModelPortal:Q9Y651
            SMR:Q9Y651 STRING:Q9Y651 PhosphoSite:Q9Y651 DMDM:6831690
            PRIDE:Q9Y651 DNASU:11166 Ensembl:ENST00000376945 GeneID:11166
            KEGG:hsa:11166 UCSC:uc001vma.3 CTD:11166 GeneCards:GC13M095361
            H-InvDB:HIX0037360 HGNC:HGNC:11197 MIM:604974 neXtProt:NX_Q9Y651
            PharmGKB:PA36034 InParanoid:Q9Y651 OMA:KPKTLMK OrthoDB:EOG4S1T8V
            PhylomeDB:Q9Y651 GenomeRNAi:11166 NextBio:42483 Bgee:Q9Y651
            CleanEx:HS_SOX21 Genevestigator:Q9Y651 GermOnline:ENSG00000125285
            Uniprot:Q9Y651
        Length = 276

 Score = 97 (39.2 bits), Expect = 0.00034, P = 0.00034
 Identities = 18/64 (28%), Positives = 37/64 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    R++  + +P   + + + K  G +WK ++E EK PF++ A++ ++ + K 
Sbjct:    13 NAFMVWSRAQRRKMAQENPKMHN-SEISKRLGAEWKLLTESEKRPFIDEAKRLRAMHMKE 71

Query:   105 MQDY 108
               DY
Sbjct:    72 HPDY 75


>MGI|MGI:2654070 [details] [associations]
            symbol:Sox21 "SRY-box containing gene 21" species:10090 "Mus
            musculus" [GO:0001942 "hair follicle development" evidence=IMP]
            [GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IDA]
            [GO:0042633 "hair cycle" evidence=IMP] [GO:0043588 "skin
            development" evidence=IMP] [GO:0045665 "negative regulation of
            neuron differentiation" evidence=ISO] [GO:0048863 "stem cell
            differentiation" evidence=ISO] InterPro:IPR009071 PROSITE:PS00353
            MGI:MGI:2654070 Pfam:PF00505 GO:GO:0005634 GO:GO:0043588
            GO:GO:0003677 GO:GO:0048863 GO:GO:0045665 GO:GO:0003700
            GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0001942 GeneTree:ENSGT00690000101940
            CleanEx:MM_SOX21 eggNOG:NOG302715 HOGENOM:HOG000231647
            HOVERGEN:HBG105618 KO:K09267 InterPro:IPR022097 Pfam:PF12336
            CTD:11166 OMA:KPKTLMK EMBL:AY142959 EMBL:AY069926 EMBL:BC069176
            EMBL:BC147556 EMBL:BC147565 IPI:IPI00453678 RefSeq:NP_808421.1
            UniGene:Mm.70950 ProteinModelPortal:Q811W0 SMR:Q811W0 STRING:Q811W0
            PhosphoSite:Q811W0 PRIDE:Q811W0 Ensembl:ENSMUST00000082178
            Ensembl:ENSMUST00000170662 GeneID:223227 KEGG:mmu:223227
            UCSC:uc007uyt.2 NextBio:376665 Bgee:Q811W0 Genevestigator:Q811W0
            GermOnline:ENSMUSG00000061517 Uniprot:Q811W0
        Length = 276

 Score = 97 (39.2 bits), Expect = 0.00034, P = 0.00034
 Identities = 18/64 (28%), Positives = 37/64 (57%)

Query:    45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
             +AF V+    R++  + +P   + + + K  G +WK ++E EK PF++ A++ ++ + K 
Sbjct:    13 NAFMVWSRAQRRKMAQENPKMHN-SEISKRLGAEWKLLTESEKRPFIDEAKRLRAMHMKE 71

Query:   105 MQDY 108
               DY
Sbjct:    72 HPDY 75

WARNING:  HSPs involving 31 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.304   0.122   0.328    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      150       134   0.00091  102 3  11 23  0.41    32
                                                     30  0.44    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  281
  No. of states in DFA:  530 (56 KB)
  Total size of DFA:  118 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.77u 0.09s 21.86t   Elapsed:  00:00:01
  Total cpu time:  21.79u 0.09s 21.88t   Elapsed:  00:00:01
  Start:  Fri May 10 09:15:37 2013   End:  Fri May 10 09:15:38 2013
WARNINGS ISSUED:  2

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