BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031973
(150 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q42344|HMGB4_ARATH High mobility group B protein 4 OS=Arabidopsis thaliana GN=HMGB4
PE=1 SV=1
Length = 138
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/138 (61%), Positives = 112/138 (81%), Gaps = 6/138 (4%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MKGG SKA+A TD +LK++G +AGK+T K DPN+PKRPPSAFFVF+E+FRK+F
Sbjct: 1 MKGGESKAEATSTDQRLKTRGRKAGKKTKK-----DPNQPKRPPSAFFVFLEDFRKEFNL 55
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
A+PNNKSVATVGKAAG +WK+M++++KAP+V +AE RK++Y KN+Q YN +LA G N E
Sbjct: 56 ANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTN-RE 114
Query: 121 ENESDKSKSEVNDEDDEE 138
E++SDKSKSEV++ EE
Sbjct: 115 EDDSDKSKSEVDEAVSEE 132
>sp|P40619|HMGL_IPONI HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1
Length = 144
Score = 149 bits (375), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 86/138 (62%), Positives = 105/138 (76%), Gaps = 6/138 (4%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MKGG+SKA +D+KL K A + K KA KDPNKPKRPPSAFFVFME+FRK +KE
Sbjct: 1 MKGGKSKA---KSDNKLAVKKQAADTKKTK-KAVKDPNKPKRPPSAFFVFMEDFRKTYKE 56
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
HPNNKSVA VGKA G+KWK ++ EKAPF+ +AEKRK +Y KN+Q YNK+ AAE
Sbjct: 57 KHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKK--QAAGAAE 114
Query: 121 ENESDKSKSEVNDEDDEE 138
E ESDKS+SEVND+D+++
Sbjct: 115 EEESDKSRSEVNDDDEDQ 132
>sp|P93047|HMGB3_ARATH High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3
PE=1 SV=1
Length = 141
Score = 143 bits (360), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 79/132 (59%), Positives = 95/132 (71%), Gaps = 7/132 (5%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MKG +SKA+ T + K A+ K AAKDPNKPKRP SAFFVFME+FR +KE
Sbjct: 1 MKGAKSKAETRSTKLSVTKKPAKGAKG-----AAKDPNKPKRPSSAFFVFMEDFRVTYKE 55
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
HP NKSVA VGKA GEKWKS+S+ EKAP+V +A+KRK +Y KNM+ YNK+L +G E
Sbjct: 56 EHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEG--PKE 113
Query: 121 ENESDKSKSEVN 132
+ ESDKS SEVN
Sbjct: 114 DEESDKSVSEVN 125
>sp|O49596|HMGB2_ARATH High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2
PE=1 SV=1
Length = 144
Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 79/133 (59%), Positives = 100/133 (75%), Gaps = 6/133 (4%)
Query: 1 MKGGRSKADAVGTDSKLKSKGAR-AGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFK 59
MKG +SK + + + K A+ AG+ A AAKDPNKPKRP SAFFVFME+FR+ FK
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKA---AAKDPNKPKRPASAFFVFMEDFRETFK 57
Query: 60 EAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAA 119
+ +P NKSVATVGKAAG+KWKS+S+ EKAP+V +AEKRK +Y KN++ YNK+L +G
Sbjct: 58 KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEG--PK 115
Query: 120 EENESDKSKSEVN 132
E+ ESDKS SEVN
Sbjct: 116 EDEESDKSVSEVN 128
>sp|P26585|HMGL_SOYBN HMG1/2-like protein OS=Glycine max PE=2 SV=1
Length = 152
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/119 (61%), Positives = 89/119 (74%), Gaps = 4/119 (3%)
Query: 1 MKGGRSKADAVGTDSKL----KSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRK 56
MKGG+SK ++ D KL K +A K K KAAKDPNKPKRPPSAFFVFMEEFRK
Sbjct: 1 MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60
Query: 57 QFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115
F + HP NK+V+ VGKAAG KWK+MS+ EKAP+V ++EKRK +Y KNM+ YNK+ A+G
Sbjct: 61 VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEG 119
>sp|P40620|HMGL_VICFA HMG1/2-like protein OS=Vicia faba PE=2 SV=1
Length = 149
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/137 (59%), Positives = 102/137 (74%), Gaps = 8/137 (5%)
Query: 1 MKGGRSKADAVGTDSKL--KSKGARAGKRTAKPKAA---KDPNKPKRPPSAFFVFMEEFR 55
MKGG+SK ++ ++KL KGA A K KP KDPNKPKRPPSAFFVFM +FR
Sbjct: 1 MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFR 60
Query: 56 KQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115
+Q+K+ HPNNKSVA VGKA GE+WKS+SE+EKAP+V+RA K+K +Y +Q YNK+L +G
Sbjct: 61 EQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKL-EG 119
Query: 116 VNAAEENESDKSKSEVN 132
+ +E SDKSKSEVN
Sbjct: 120 KD--DEEGSDKSKSEVN 134
>sp|O49595|HMGB1_ARATH High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1
PE=1 SV=1
Length = 178
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/108 (60%), Positives = 83/108 (76%), Gaps = 5/108 (4%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
KA KDPNKPKR PSAFFVF+E+FR FK+ +PN K+V+ VGKA G+KWKSMS+ EKAP+
Sbjct: 45 KAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYE 104
Query: 92 ERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEG 139
E+A KRK++Y K M YNK L +G +ES+KS+SE+NDED+ G
Sbjct: 105 EKAAKRKAEYEKQMDAYNKNLEEG-----SDESEKSRSEINDEDEASG 147
>sp|P27347|MNB1B_MAIZE DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1
Length = 157
Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/112 (63%), Positives = 84/112 (75%), Gaps = 3/112 (2%)
Query: 1 MKGGRSKADAVGTDSKL--KSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQF 58
MKG +SK A D+KL KSKGA + K KA KDPNKPKR PSAFFVFMEEFRK+F
Sbjct: 1 MKGAKSKG-AAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEF 59
Query: 59 KEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110
KE +P NKSVA VGKAAG++WKS+SE +KAP+V +A K K +YNK + YNK
Sbjct: 60 KEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNK 111
>sp|O49597|HMGB5_ARATH High mobility group B protein 5 OS=Arabidopsis thaliana GN=HMGB5
PE=2 SV=1
Length = 125
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 88/115 (76%), Gaps = 6/115 (5%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MK +++ ++ TD +LK +G + GK+T KDPN+PK+PPS FFVF+++FRK+F
Sbjct: 1 MKDNQTEVESRSTDDRLKVRGNKVGKKT------KDPNRPKKPPSPFFVFLDDFRKEFNL 54
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115
A+P+NKSV VG+AAG+KWK+M+E+E+APFV +++ +K++Y MQ YN +LA+G
Sbjct: 55 ANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQSKKTEYAVTMQQYNMELANG 109
>sp|P40621|HMGL_WHEAT HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1
Length = 161
Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/113 (61%), Positives = 84/113 (74%), Gaps = 4/113 (3%)
Query: 1 MKGGRSKADAVGTDSKL--KSKGA-RAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQ 57
MKG +SK A D+KL KSKGA + + K KA KDPNKPKR PSAFFVFM EFR++
Sbjct: 1 MKGAKSKG-AAKADAKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREE 59
Query: 58 FKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110
FK+ +P NKSVA VGKAAGE+WKS+SE EKAP+V +A K K +YNK + YNK
Sbjct: 60 FKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNK 112
>sp|O64702|HMG14_ARATH High mobility group B protein 14 OS=Arabidopsis thaliana GN=HMGB14
PE=2 SV=2
Length = 151
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 62/88 (70%)
Query: 40 PKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKS 99
PK+P +AFF F+++FRKQ++E +P+ KS+ +GK GEKWK+M+ +EK + + A +++
Sbjct: 63 PKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKRE 122
Query: 100 DYNKNMQDYNKQLADGVNAAEENESDKS 127
++++ M +Y K++ G + E +SD S
Sbjct: 123 EFHRAMTEYTKRMESGAHDESETDSDYS 150
>sp|Q32L31|HMGB3_BOVIN High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2
Length = 200
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K A+P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSANPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P++ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>sp|O54879|HMGB3_MOUSE High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3
Length = 200
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S++EK P+V +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADY 160
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>sp|Q8LDF9|HMGB7_ARATH High mobility group B protein 7 OS=Arabidopsis thaliana GN=HMGB7
PE=1 SV=1
Length = 241
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 54/75 (72%), Gaps = 3/75 (4%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT-VGKAAGEKWKSMSEDEKAPF 90
K++ NKPKRP +AFF+FM +FRK FK H N S+A K GEKWKS++E+EK +
Sbjct: 107 KSSSTSNKPKRPLTAFFIFMSDFRKTFKSEH--NGSLAKDAAKIGGEKWKSLTEEEKKVY 164
Query: 91 VERAEKRKSDYNKNM 105
+++A + K++YNK++
Sbjct: 165 LDKAAELKAEYNKSL 179
>sp|O15347|HMGB3_HUMAN High mobility group protein B3 OS=Homo sapiens GN=HMGB3 PE=1 SV=4
Length = 200
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++++ EK P++ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>sp|P40618|HMGB3_CHICK High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2
Length = 202
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPSAFF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSAFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P+ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADY 160
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EKA F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>sp|P0C6E5|HMG3M_HUMAN Putative high mobility group protein B3-like protein OS=Homo
sapiens PE=5 SV=1
Length = 187
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 60/104 (57%), Gaps = 9/104 (8%)
Query: 6 SKADAVGTDSKLKSKG-ARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+KAD V D ++K G A+ GK+ KDPN PKRPPS FF+F EF + K +P
Sbjct: 64 AKADKVHYDQEIKDYGPAKGGKK-------KDPNAPKRPPSGFFLFCSEFCPKSKSTNPG 116
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
+ V K GE WK++++ EK P++ +A K K Y K++ Y
Sbjct: 117 I-PIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEKDVAVY 159
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS+ EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAKADKVHYDQ 73
Query: 104 NMQDY 108
++DY
Sbjct: 74 EIKDY 78
>sp|P36194|HMGB1_CHICK High mobility group protein B1 OS=Gallus gallus GN=HMGB1 PE=2 SV=2
Length = 201
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 63 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 117
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P+ +A K K Y K++ DY
Sbjct: 118 -SIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADY 159
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
SA+ F++ R++ K+ + A K E+WK+MS EKA F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDRE 73
Query: 105 MQDY 108
M+DY
Sbjct: 74 MKDY 77
>sp|P07746|HMGT_ONCMY High mobility group-T protein OS=Oncorhynchus mykiss PE=2 SV=2
Length = 204
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K D V + +++S G+ K K KDPN PKRP SAFF+F +FR Q K P
Sbjct: 63 AKLDKVRYEREMRSYIPPKGE---KKKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGL 119
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GEKW +++ ++K P+ ++A + K Y K++ Y
Sbjct: 120 -SIGDVAKKLGEKWNNLTAEDKVPYEKKASRLKEKYEKDITAY 161
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVE 92
KDP KP+ S++ F++ R++ K+ HP + + + K E+WK+MS EK F +
Sbjct: 2 GKDPRKPRGKMSSYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFED 61
Query: 93 RAEKRKSDYNKNMQDY 108
A+ K Y + M+ Y
Sbjct: 62 LAKLDKVRYEREMRSY 77
>sp|Q04678|SSRP1_CHICK FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2
Length = 706
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK+MS++
Sbjct: 531 KKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPG-ISITDLSKKAGELWKAMSKE 589
Query: 86 EKAPFVERAEKRKSDYNKNMQDYN 109
+K + +AE K DY K M++Y+
Sbjct: 590 KKEEWDRKAEDAKRDYEKAMKEYS 613
>sp|P07156|HMGB1_CRIGR High mobility group protein B1 (Fragment) OS=Cricetulus griseus
GN=HMGB1 PE=1 SV=1
Length = 180
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 55 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 113
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 114 AKLKEKYEKDIAAY 127
>sp|P63159|HMGB1_RAT High mobility group protein B1 OS=Rattus norvegicus GN=Hmgb1 PE=1
SV=2
Length = 215
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|A9RA84|HMGB1_PAPAN High mobility group protein B1 OS=Papio anubis GN=HMGB1 PE=3 SV=1
Length = 215
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|P63158|HMGB1_MOUSE High mobility group protein B1 OS=Mus musculus GN=Hmgb1 PE=1 SV=2
Length = 215
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|Q4R844|HMGB1_MACFA High mobility group protein B1 OS=Macaca fascicularis GN=HMGB1 PE=2
SV=3
Length = 215
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|P09429|HMGB1_HUMAN High mobility group protein B1 OS=Homo sapiens GN=HMGB1 PE=1 SV=3
Length = 215
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|Q08IE6|HMGB1_HORSE High mobility group protein B1 OS=Equus caballus GN=HMGB1 PE=2 SV=3
Length = 215
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|Q6YKA4|HMGB1_CANFA High mobility group protein B1 OS=Canis familiaris GN=HMGB1 PE=2
SV=3
Length = 215
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|B1MTB0|HMGB1_CALMO High mobility group protein B1 OS=Callicebus moloch GN=HMGB1 PE=3
SV=1
Length = 215
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|B0CM99|HMGB1_CALJA High mobility group protein B1 OS=Callithrix jacchus GN=HMGB1 PE=3
SV=1
Length = 215
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|P10103|HMGB1_BOVIN High mobility group protein B1 OS=Bos taurus GN=HMGB1 PE=1 SV=3
Length = 215
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|P12682|HMGB1_PIG High mobility group protein B1 OS=Sus scrofa GN=HMGB1 PE=2 SV=3
Length = 215
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKHPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|Q9W602|SSRP1_XENLA FACT complex subunit SSRP1 OS=Xenopus laevis GN=ssrp1 PE=1 SV=1
Length = 693
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 30 KPKA--AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEK 87
KP+A KDP PKRP SA+ +++ R++ K +P S+ + K AGE WK+MS D+K
Sbjct: 529 KPEAKKTKDPGAPKRPMSAYMLWLNASREKIKSENPG-ISITDLSKKAGEIWKNMSRDKK 587
Query: 88 APFVERAEKRKSDYNKNMQDYN 109
+ RAE+ K DY K M++YN
Sbjct: 588 EEWDRRAEEAKRDYEKAMKEYN 609
>sp|Q08945|SSRP1_HUMAN FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP1 PE=1 SV=1
Length = 709
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 19 SKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEK 78
+K ++ K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE
Sbjct: 526 AKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEI 584
Query: 79 WKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
WK MS+++K + +AE + DY K M++Y
Sbjct: 585 WKGMSKEKKEEWDRKAEDARRDYEKAMKEY 614
>sp|Q9SUP7|HMGB6_ARATH High mobility group B protein 6 OS=Arabidopsis thaliana GN=HMGB6
PE=2 SV=1
Length = 456
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP KPK P SAF V+ E R +E NKSV V K GE+WK++S+ +KAP+ + A+
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALRE---ENKSVVEVAKITGEEWKNLSDKKKAPYEKVAK 307
Query: 96 KRKSDYNKNMQDYNK 110
K K Y + M++Y +
Sbjct: 308 KNKETYLQAMEEYKR 322
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHP--NNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
DPNKPK+P S++F+F ++ RK+ E P NN ATV KWK +SE+EK + +
Sbjct: 375 DPNKPKKPASSYFLFSKDERKKLTEERPGTNN---ATVTALISLKWKELSEEEKQVYNGK 431
Query: 94 AEKRKSDYNKNMQDYNKQLA 113
A K Y K ++ YNK+ A
Sbjct: 432 AAKLMEAYKKEVEAYNKKSA 451
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 41 KRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSD 100
KRP S++ ++ ++ + K+ +P G KWKS+S ++K P+ ER + K
Sbjct: 139 KRPSSSYVLWCKDQWTEVKKENPEA-DFKETSNILGAKWKSLSAEDKKPYEERYQVEKEA 197
Query: 101 Y 101
Y
Sbjct: 198 Y 198
>sp|Q9T012|HMG13_ARATH High mobility group B protein 13 OS=Arabidopsis thaliana GN=HMGB13
PE=2 SV=1
Length = 446
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP KPK+P SA+ ++ E R K NKSV V K AGE+WK++SE++KAP+ + A+
Sbjct: 242 DPLKPKQPISAYLIYANERRAALK---GENKSVIEVAKMAGEEWKNLSEEKKAPYDQMAK 298
Query: 96 KRKSDYNKNMQDYNK 110
K K Y + M+ Y +
Sbjct: 299 KNKEIYLQEMEGYKR 313
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHP--NNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
DPNKPK+P S++F+F ++ RK E HP NN +TV KW + E+EK + +
Sbjct: 368 DPNKPKKPTSSYFLFCKDARKSVLEEHPGINN---STVTAHISLKWMELGEEEKQVYNSK 424
Query: 94 AEKRKSDYNKNMQDYNK 110
A + Y K +++YNK
Sbjct: 425 AAELMEAYKKEVEEYNK 441
>sp|Q08943|SSRP1_MOUSE FACT complex subunit SSRP1 OS=Mus musculus GN=Ssrp1 PE=1 SV=2
Length = 708
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 19 SKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEK 78
+K ++ +++++ K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE
Sbjct: 526 AKDRKSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEI 584
Query: 79 WKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
WK MS+++K + +AE + +Y K M++Y
Sbjct: 585 WKGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>sp|P26584|HMGB2_CHICK High mobility group protein B2 OS=Gallus gallus GN=HMGB2 PE=2 SV=2
Length = 207
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPSAFF+F E R + K HP S+ K GE W +K P+ ++A
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGL-SIGDTAKKLGEMWSEQLAKDKQPYEQKAA 149
Query: 96 KRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 150 KLKEKYEKDIAAY 162
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A + E+WK+MS EK F E A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KGDKARYDREMKNY 78
>sp|P0CO24|NHP6_CRYNJ Non-histone chromosomal protein 6 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=NHP6 PE=3 SV=1
Length = 116
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 13/98 (13%)
Query: 11 VGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT 70
V T KS + A KRT K DPNKPKR SA+ F++++R++ K +P +
Sbjct: 4 VSTKDSKKSTASDAKKRTKK-----DPNKPKRALSAYMFFVQDYRERIKTENP-EATFGD 57
Query: 71 VGKAAGEKWKSMSEDEKAPF-------VERAEKRKSDY 101
VGK G KW+ M+E+EK P+ ERA++ +DY
Sbjct: 58 VGKLLGIKWREMNENEKKPYEAKAKADKERADRENADY 95
>sp|P0CO25|NHP6_CRYNB Non-histone chromosomal protein 6 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=NHP6 PE=3 SV=1
Length = 116
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 13/98 (13%)
Query: 11 VGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT 70
V T KS + A KRT K DPNKPKR SA+ F++++R++ K +P +
Sbjct: 4 VSTKDSKKSTASDAKKRTKK-----DPNKPKRALSAYMFFVQDYRERIKTENP-EATFGD 57
Query: 71 VGKAAGEKWKSMSEDEKAPF-------VERAEKRKSDY 101
VGK G KW+ M+E+EK P+ ERA++ +DY
Sbjct: 58 VGKLLGIKWREMNENEKKPYEAKAKADKERADRENADY 95
>sp|Q8WW32|HMGB4_HUMAN High mobility group protein B4 OS=Homo sapiens GN=HMGB4 PE=2 SV=2
Length = 186
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP +P+RPPS+F +F ++ Q K +P N SV V KA G+ W + ++ EK P+ +R
Sbjct: 89 DPQEPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSTATDLEKHPYEQRVA 147
Query: 96 KRKSDYNKNMQDYNKQL 112
++ Y + ++ Y KQ
Sbjct: 148 LLRAKYFEELELYRKQC 164
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKS-VATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
KPK S++ F+ +R +FKE PN + EKW+S+S+ EKA + A+
Sbjct: 8 KPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
Query: 98 KSDYNKNMQDY 108
K+ Y + M +Y
Sbjct: 68 KARYQEEMMNY 78
>sp|P40644|HMGH_STRPU High mobility group protein 1 homolog OS=Strongylocentrotus
purpuratus GN=HMG1 PE=2 SV=1
Length = 200
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 5 RSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+S D V D +++S G++ + + KDP+ PKR SAFF+F E R K HPN
Sbjct: 65 KSMRDKVRYDREMQSYKPPKGEKNKRRRRRKDPDAPKRNLSAFFIFSGENRAAIKSVHPN 124
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
SV + K +W++M+ EK PF + A K K Y K M +Y
Sbjct: 125 W-SVGDIAKELAVRWRAMTAGEKIPFDKGAAKDKERYIKAMAEY 167
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVER 93
+D +KP+ SA+ F+++ R + + HPN+ A K +WK++ E K F E+
Sbjct: 6 RDSSKPRGRMSAYAYFVQDSRAEHGKNHPNSPVRFAEFSKDCSARWKALEEKGKGVFHEK 65
Query: 94 AEKRKSDYNKNMQDY 108
+ + K Y++ MQ Y
Sbjct: 66 SMRDKVRYDREMQSY 80
>sp|B2RPK0|HGB1A_HUMAN Putative high mobility group protein B1-like 1 OS=Homo sapiens
GN=HMGB1P1 PE=5 SV=1
Length = 211
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+ + K HP S+ V K GE W + + D+K P ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYHPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPGEKKA 148
Query: 95 EKRKSDYNKNMQDYN 109
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAYQ 163
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ H + + + + E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKTHYERQMKTY 78
>sp|P87057|NHP6_SCHPO Non-histone chromosomal protein 6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nhp6 PE=3 SV=1
Length = 108
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 27 RTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDE 86
R AK KDPN PKR SAF F E R++ K +P+ + +G G++WK ++ E
Sbjct: 3 RAAKSSRKKDPNTPKRNMSAFMFFSIENREKMKTDNPD-ATFGQLGSLLGKRWKELTSTE 61
Query: 87 KAPFVERAEKRKSDYNKNMQDYNKQLADG 115
+ P+ E+A + K Y + ++Y+ +LA+G
Sbjct: 62 REPYEEKARQDKERYERERKEYDTKLANG 90
>sp|Q32L34|HMGB4_BOVIN High mobility group protein B4 OS=Bos taurus GN=HMGB4 PE=2 SV=1
Length = 194
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 59/107 (55%), Gaps = 2/107 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP+ P+RPPS+F +F ++ Q K +P+ SV V KA+G+ W + ++ +K P+ +RA
Sbjct: 89 DPHAPRRPPSSFLLFCQDHYAQLKSENPS-WSVVQVAKASGKMWSAKTDVDKQPYEQRAA 147
Query: 96 KRKSDYNKNMQDYNKQLADGVNAAEENESDKSKS-EVNDEDDEEGSG 141
++ Y + + Y Q +E+ +++ + E + D +GS
Sbjct: 148 LLRAKYREELSVYRNQFNARKTCLQESATNQCREFEQAESDTTDGSN 194
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVER 93
+D KPK S++ F+ +R +FKE PN + EKW+S+S+ EKA +
Sbjct: 4 RDQLKPKANVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEAL 63
Query: 94 AEKRKSDYNKNMQDY 108
A+ K+ Y + M +Y
Sbjct: 64 AKLDKARYQEEMMNY 78
>sp|P52925|HMGB2_RAT High mobility group protein B2 OS=Rattus norvegicus GN=Hmgb2 PE=2
SV=2
Length = 210
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
N PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ ++A K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 98 KSDYNKNMQDY 108
K Y K++ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A K E+WK+MS EK+ F + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KSDKARYDREMKNY 78
>sp|P26583|HMGB2_HUMAN High mobility group protein B2 OS=Homo sapiens GN=HMGB2 PE=1 SV=2
Length = 209
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
N PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ ++A K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 98 KSDYNKNMQDY 108
K Y K++ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A K E+WK+MS EK+ F + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KSDKARYDREMKNY 78
>sp|P40673|HMGB2_BOVIN High mobility group protein B2 OS=Bos taurus GN=HMGB2 PE=1 SV=3
Length = 209
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
N PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ ++A K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 98 KSDYNKNMQDY 108
K Y K++ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A K E+WK+MS EK+ F + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KSDKARYDREMKNY 78
>sp|Q7S045|NHP6_NEUCR Non-histone chromosomal protein 6 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=nhp-6 PE=3 SV=1
Length = 103
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 30 KPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAP 89
K +A KDPN PKR SA+ F E R+ +E +P S VGK GE+WK++S+ ++AP
Sbjct: 16 KRRAKKDPNAPKRGLSAYMFFANEQRENVREENPGV-SFGQVGKILGERWKALSDKQRAP 74
Query: 90 FVERAEKRKSDYNKNMQDYN 109
+ +A K Y Q YN
Sbjct: 75 YEAKAAADKKRYEDEKQAYN 94
>sp|P17741|HMGB2_PIG High mobility group protein B2 OS=Sus scrofa GN=HMGB2 PE=1 SV=2
Length = 210
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
N PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ ++A K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 98 KSDYNKNMQDY 108
K Y K++ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A K E+WK+MS EK+ F + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KSDKARYDREMKNY 78
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.304 0.123 0.335
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,204,990
Number of Sequences: 539616
Number of extensions: 2259140
Number of successful extensions: 14298
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 510
Number of HSP's that attempted gapping in prelim test: 12291
Number of HSP's gapped (non-prelim): 1933
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.8 bits)