BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031974
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EAI|B Chain B, Co-Crystal Structure Of An Ampk Core With Amp
pdb|4EAJ|B Chain B, Co-Crystal Of Ampk Core With Amp Soaked With Atp
Length = 85
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 72 AEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGS 131
+E+ K PP++PPHL +LN + P L P HV+LNHLY K SV+ L +
Sbjct: 11 SEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKD--SVMVLSA 68
Query: 132 THRFLAKYVTVVLYK 146
THR+ KYVT +LYK
Sbjct: 69 THRYKKKYVTTLLYK 83
>pdb|2V8Q|B Chain B, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Amp
pdb|2V92|B Chain B, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Atp-Amp
pdb|2V9J|B Chain B, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Mg.Atp-Amp
pdb|2Y8L|B Chain B, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Two Adp
pdb|2Y8Q|B Chain B, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With One Adp
pdb|2Y94|B Chain B, Structure Of An Active Form Of Mammalian Ampk
pdb|2YA3|B Chain B, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Coumarin Adp
Length = 87
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 72 AEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGS 131
+E+ K PP++PPHL +LN + P L P HV+LNHLY K SV+ L +
Sbjct: 13 SEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKD--SVMVLSA 70
Query: 132 THRFLAKYVTVVLYK 146
THR+ KYVT +LYK
Sbjct: 71 THRYKKKYVTTLLYK 85
>pdb|4EAG|B Chain B, Co-Crystal Structure Of An Chimeric Ampk Core With Atp
Length = 85
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 73 EDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGST 132
E+ K PP++PPHL +LN P L P HV+LNHLY K G V+ L +T
Sbjct: 12 EERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALSIKDG--VMVLSAT 69
Query: 133 HRFLAKYVTVVLYK 146
HR+ KYVT +LYK
Sbjct: 70 HRYKKKYVTTLLYK 83
>pdb|4EAK|B Chain B, Co-Crystal Structure Of An Ampk Core With Atp
pdb|4EAL|B Chain B, Co-Crystal Of Ampk Core With Atp Soaked With Amp
Length = 72
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 77 KEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFL 136
K PP++PPHL +LN P L P HV+LNHLY K G V+ L +THR+
Sbjct: 3 KAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALSIKDG--VMVLSATHRYK 60
Query: 137 AKYVTVVLYK 146
KYVT +LYK
Sbjct: 61 KKYVTTLLYK 70
>pdb|2OOX|B Chain B, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOX|D Chain D, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOY|B Chain B, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2OOY|D Chain D, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2QR1|B Chain B, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QR1|D Chain D, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QRC|B Chain B, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRC|D Chain D, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRD|B Chain B, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRD|D Chain D, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRE|B Chain B, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
pdb|2QRE|D Chain D, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
Length = 97
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 87 QMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 146
+ +LN +Y E L P HV+LNHL + G V+AL +T R+ KYVT ++K
Sbjct: 36 EKCILNSNTAYKEDQSVLPNPNHVLLNHLAAANTQLG--VLALSATTRYHRKYVTTAMFK 93
Query: 147 SM 148
+
Sbjct: 94 NF 95
>pdb|1Z0N|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
pdb|1Z0N|B Chain B, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
pdb|1Z0N|C Chain C, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
Length = 96
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 4 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQE 43
LP G +QY+F VDG W + P P G V NI+ +++
Sbjct: 51 LPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKK 90
>pdb|1Z0M|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
pdb|1Z0M|B Chain B, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
pdb|1Z0M|C Chain C, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
Length = 96
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 4 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQE 43
LP G +QY+F VDG W + P P G V NI+ +++
Sbjct: 51 LPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKK 90
>pdb|2QLV|B Chain B, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|E Chain E, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 252
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 80/209 (38%), Gaps = 69/209 (33%)
Query: 1 MKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQ--EYVPDDLESISSFE-- 56
+++LP G +++RF+VD + + LP+ D GN N ++++ E P + E I S E
Sbjct: 46 LRLLP-GTHRFRFIVDNELRVSDFLPTATDQMGNFVNYIEVRQPEKNPTN-EKIRSKEAD 103
Query: 57 ---PPQSPETSYNNLQLTA-------------EDFAKEPPL------------------- 81
PP S +S LQ+ ED + PPL
Sbjct: 104 SMRPPTSDRSSIA-LQIGKDPDDFGDGYTRFHEDLSPRPPLEYTTDIPAVFTDPSVMERY 162
Query: 82 --------------------VPPHLQMTLLNVPASYMEI-----PPPLSRPQHVVLNHLY 116
+PP L+ +LN + + L P HVVLNHL
Sbjct: 163 YYTLDRQQSNTDTSWLTPPQLPPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHLV 222
Query: 117 MQKGKSGPSVVALGSTHRFLAKYVTVVLY 145
K VA S R+ KYVT +LY
Sbjct: 223 TSSIKHNTLCVA--SIVRYKQKYVTQILY 249
>pdb|2F15|A Chain A, Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta2 Subunit
Length = 96
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 4 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQE 43
LP G +QY+F VDG W + P P G + N++ +++
Sbjct: 51 LPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKK 90
>pdb|3T4N|B Chain B, Structure Of The Regulatory Fragment Of Saccharomyces
Cerevisiae Ampk In Complex With Adp
pdb|3TDH|B Chain B, Structure Of The Regulatory Fragment Of Sccharomyces
Cerevisiae Ampk In Complex With Amp
pdb|3TE5|B Chain B, Structure Of The Regulatory Fragment Of Sacchromyces
Cerevisiae Ampk In Complex With Nadh
Length = 113
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 79 PPLVPPHLQMTLLNVPASYMEI-----PPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTH 133
PP +PP L+ +LN + + L P HVVLNHL K VA S
Sbjct: 38 PPQLPPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHLVTSSIKHNTLCVA--SIV 95
Query: 134 RFLAKYVTVVLYKSMQ 149
R+ KYVT +LY ++
Sbjct: 96 RYKQKYVTQILYTPIE 111
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
Length = 845
Score = 29.3 bits (64), Expect = 0.92, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 27 STQDDDGNVYNILDLQEYVPDDLESISSFEPPQSPETSYNNLQLTAE 73
+T+D D V +L + ++V D+LE E PE++ NN + T++
Sbjct: 267 TTEDVDDRVRQVLKMIKFVVDNLEKTGIVE--NGPESTSNNTKETSD 311
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 28.5 bits (62), Expect = 1.7, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 56 EPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYME 99
+PP P+ S N + F + PP++ P Q + N+ S E
Sbjct: 615 QPPYKPKASGRNAENFDRFFTRHPPVLXPPDQEVIRNIDQSEFE 658
>pdb|4AEF|A Chain A, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
pdb|4AEF|B Chain B, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
Length = 645
Score = 27.7 bits (60), Expect = 2.4, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 4 LPSGVYQYRFLVDGLWKYAPDLP 26
LP GV+ Y F +DG + PD P
Sbjct: 59 LPEGVWHYAFSIDGKFVLDPDNP 81
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
Length = 845
Score = 27.7 bits (60), Expect = 2.4, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 27 STQDDDGNVYNILDLQEYVPDDLESISSFEPPQSPETSYNNLQLTAE 73
+T+D D V +L ++V D+LE E PE++ NN + T++
Sbjct: 267 TTEDVDDRVRQVLKXIKFVVDNLEKTGIVE--NGPESTSNNTKETSD 311
>pdb|3NME|A Chain A, Structure Of A Plant Phosphatase
pdb|3NME|B Chain B, Structure Of A Plant Phosphatase
Length = 294
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 2 KVLPSGVYQYRFLVDGLWKYAPDLPSTQ-DDDGNVYN 37
+ LP G ++Y++++DG W + P + DG+ N
Sbjct: 212 RELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGHTNN 248
>pdb|2Y6U|A Chain A, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form Ii)
pdb|2Y6V|A Chain A, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
pdb|2Y6V|B Chain B, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
pdb|2Y6V|C Chain C, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
Length = 398
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 34 NVYNILDLQEYVPDDLESISSFEP------PQSPETSYNNLQLTAED-FAKEPPLV 82
N++++L L E V ++I + P PQ PE YN+L+L D FA E V
Sbjct: 160 NLFHLLILIEPVVITRKAIGAGRPGLPPDSPQIPENLYNSLRLKTXDHFANESEYV 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,988,572
Number of Sequences: 62578
Number of extensions: 205592
Number of successful extensions: 361
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 338
Number of HSP's gapped (non-prelim): 20
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)