BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031974
(150 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SCY5|KINB2_ARATH SNF1-related protein kinase regulatory subunit beta-2
OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1
Length = 289
Score = 251 bits (640), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 117/150 (78%), Positives = 137/150 (91%)
Query: 1 MKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQS 60
MKVLPSGVY+YRF+VDG W++AP+LP +DD GN +NILDLQ+YVP+D++SIS FEPPQS
Sbjct: 140 MKVLPSGVYEYRFIVDGQWRHAPELPLARDDAGNTFNILDLQDYVPEDIQSISGFEPPQS 199
Query: 61 PETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKG 120
PE SY+NL L AED++KEPP+VPPHLQMTLLN+PA+ +IP PL RPQHV+LNHLYMQKG
Sbjct: 200 PENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSPLPRPQHVILNHLYMQKG 259
Query: 121 KSGPSVVALGSTHRFLAKYVTVVLYKSMQR 150
KSGPSVVALGSTHRFLAKYVTVVLYKS+QR
Sbjct: 260 KSGPSVVALGSTHRFLAKYVTVVLYKSLQR 289
>sp|Q84VQ1|KINB1_ARATH SNF1-related protein kinase regulatory subunit beta-1
OS=Arabidopsis thaliana GN=KINB1 PE=1 SV=1
Length = 283
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 101/148 (68%), Gaps = 4/148 (2%)
Query: 3 VLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQSPE 62
VLPSG+Y Y+ +VDG KY PDLP D+ GNV NILD+ +VP++ ESI FE P SP+
Sbjct: 140 VLPSGIYHYKVIVDGESKYIPDLPFVADEVGNVCNILDVHNFVPENPESIVEFEAPPSPD 199
Query: 63 TSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKS 122
SY AED+AKEP VPP L +TLL E ++PQHVVLNH+++++G +
Sbjct: 200 HSYGQTLPAAEDYAKEPLAVPPQLHLTLLGT----TEETAIATKPQHVVLNHVFIEQGWT 255
Query: 123 GPSVVALGSTHRFLAKYVTVVLYKSMQR 150
S+VALG THRF +KY+TVVLYK + R
Sbjct: 256 PQSIVALGLTHRFESKYITVVLYKPLTR 283
>sp|Q9ZUU8|KINB3_ARATH SNF1-related protein kinase regulatory subunit beta-3
OS=Arabidopsis thaliana GN=KINB3 PE=1 SV=1
Length = 114
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 72/107 (67%), Gaps = 6/107 (5%)
Query: 46 PDDLE--SISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPP 103
PDD E ++ FE P SP +SYNN+ + ED ++PP VPPHLQ +LL S ME+
Sbjct: 6 PDDHEDTTVVGFEVPVSPVSSYNNVYSSTEDETRDPPAVPPHLQHSLLGNQGS-MEL--- 61
Query: 104 LSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSMQR 150
PQ+VVLNHLY++ + SVVALG +HRF K+VTVV+YK +QR
Sbjct: 62 AYAPQNVVLNHLYIENRDAPRSVVALGFSHRFRTKFVTVVIYKPVQR 108
>sp|Q9QZH4|AAKB2_RAT 5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus
GN=Prkab2 PE=1 SV=1
Length = 271
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 79/158 (50%), Gaps = 20/158 (12%)
Query: 4 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSF--EPPQSP 61
LP G +QY+F VDG W + P P G + N++ +++ D E + + +S
Sbjct: 117 LPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKK---SDFEVFDALKLDSMESS 173
Query: 62 ETSYNNLQ-------------LTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQ 108
ETS +L +E+ K PP++PPHL +LN + P L P
Sbjct: 174 ETSCRDLSSSPPGPYGQEMYVFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPN 233
Query: 109 HVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 146
HV+LNHLY K SV+ L +THR+ KYVT +LYK
Sbjct: 234 HVMLNHLYALSTKD--SVMVLSATHRYKKKYVTTLLYK 269
>sp|Q6PAM0|AAKB2_MOUSE 5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus
GN=Prkab2 PE=1 SV=1
Length = 271
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 79/158 (50%), Gaps = 20/158 (12%)
Query: 4 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSF--EPPQSP 61
LP G +QY+F VDG W + P P G + N++ +++ D E + + +S
Sbjct: 117 LPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKK---SDFEVFDALKLDSMESS 173
Query: 62 ETSYNNLQ-------------LTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQ 108
ETS +L +E+ K PP++PPHL +LN + P L P
Sbjct: 174 ETSCRDLSSSPPGPYGQEMYVFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPN 233
Query: 109 HVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 146
HV+LNHLY K SV+ L +THR+ KYVT +LYK
Sbjct: 234 HVMLNHLYALSIKD--SVMVLSATHRYKKKYVTTLLYK 269
>sp|O43741|AAKB2_HUMAN 5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens
GN=PRKAB2 PE=1 SV=1
Length = 272
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 79/158 (50%), Gaps = 20/158 (12%)
Query: 4 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSF--EPPQSP 61
LP G +QY+F VDG W + P P G + N++ +++ D E + + +S
Sbjct: 118 LPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKK---SDFEVFDALKLDSMESS 174
Query: 62 ETSYNNLQ-------------LTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQ 108
ETS +L +E+ K PP++PPHL +LN + P L P
Sbjct: 175 ETSCRDLSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPN 234
Query: 109 HVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 146
HV+LNHLY K SV+ L +THR+ KYVT +LYK
Sbjct: 235 HVMLNHLYALSIKD--SVMVLSATHRYKKKYVTTLLYK 270
>sp|P80386|AAKB1_RAT 5'-AMP-activated protein kinase subunit beta-1 OS=Rattus norvegicus
GN=Prkab1 PE=1 SV=4
Length = 270
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 75/153 (49%), Gaps = 12/153 (7%)
Query: 4 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQE--------YVPDDLESISSF 55
LP G +QY+F VDG W + P P G V NI+ +++ + D +
Sbjct: 118 LPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVS 177
Query: 56 EPPQSPETSYNNLQLTA--EDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLN 113
E SP Y+ + E+ K PP++PPHL +LN P L P HV+LN
Sbjct: 178 ELSSSPPGPYHQEPYISKPEERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN 237
Query: 114 HLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 146
HLY K G V+ L +THR+ KYVT +LYK
Sbjct: 238 HLYALSIKDG--VMVLSATHRYKKKYVTTLLYK 268
>sp|Q9R078|AAKB1_MOUSE 5'-AMP-activated protein kinase subunit beta-1 OS=Mus musculus
GN=Prkab1 PE=1 SV=2
Length = 270
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 75/153 (49%), Gaps = 12/153 (7%)
Query: 4 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQE--------YVPDDLESISSF 55
LP G +QY+F VDG W + P P G V NI+ +++ + D +
Sbjct: 118 LPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVS 177
Query: 56 EPPQSPETSYNNLQLTA--EDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLN 113
E SP Y+ + E+ K PP++PPHL +LN P L P HV+LN
Sbjct: 178 ELSSSPPGPYHQEPYMSKPEERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN 237
Query: 114 HLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 146
HLY K G V+ L +THR+ KYVT +LYK
Sbjct: 238 HLYALSIKDG--VMVLSATHRYKKKYVTTLLYK 268
>sp|Q5BIS9|AAKB1_BOVIN 5'-AMP-activated protein kinase subunit beta-1 OS=Bos taurus
GN=PRKAB1 PE=2 SV=3
Length = 270
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 75/153 (49%), Gaps = 12/153 (7%)
Query: 4 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQE--------YVPDDLESISSF 55
LP G +QY+F VDG W + P P G V N++ +++ + D +
Sbjct: 118 LPEGEHQYKFFVDGQWTHDPSEPVVTSQLGTVNNVIQVKKTDFEVFDALMVDSQKCSDVS 177
Query: 56 EPPQSPETSYNNLQLTA--EDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLN 113
E SP Y+ + E+ K PP++PPHL +LN P L P HV+LN
Sbjct: 178 ELSSSPPGPYHQEPYISKPEERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN 237
Query: 114 HLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 146
HLY K G V+ L +THR+ KYVT +LYK
Sbjct: 238 HLYALSIKDG--VMVLSATHRYKKKYVTTLLYK 268
>sp|Q9Y478|AAKB1_HUMAN 5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens
GN=PRKAB1 PE=1 SV=4
Length = 270
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 74/153 (48%), Gaps = 12/153 (7%)
Query: 4 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQE--------YVPDDLESISSF 55
LP G +QY+F VDG W + P P G V NI+ +++ + D +
Sbjct: 118 LPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVS 177
Query: 56 EPPQSPETSYNNLQLTA--EDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLN 113
E SP Y+ E+ + PP++PPHL +LN P L P HV+LN
Sbjct: 178 ELSSSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN 237
Query: 114 HLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 146
HLY K G V+ L +THR+ KYVT +LYK
Sbjct: 238 HLYALSIKDG--VMVLSATHRYKKKYVTTLLYK 268
>sp|Q5R801|AAKB1_PONAB 5'-AMP-activated protein kinase subunit beta-1 OS=Pongo abelii
GN=PRKAB1 PE=2 SV=3
Length = 270
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 74/153 (48%), Gaps = 12/153 (7%)
Query: 4 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQE--------YVPDDLESISSF 55
LP G +QY+F VDG W + P P G V NI+ +++ + D +
Sbjct: 118 LPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVS 177
Query: 56 EPPQSPETSYNNLQLTA--EDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLN 113
E SP Y+ E+ + PP++PPHL +LN P L P HV+LN
Sbjct: 178 ELSSSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN 237
Query: 114 HLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 146
HLY K G V+ L +THR+ KYVT +LYK
Sbjct: 238 HLYALSIKDG--VMVLSATHRYKKKYVTTLLYK 268
>sp|P78789|YC63_SCHPO Uncharacterized protein C1919.03c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC1919.03c PE=1 SV=2
Length = 298
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 33/165 (20%)
Query: 7 GVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQ------EYVPDDLESISSFEPPQS 60
G +++FLVDG+W + D P+ D +GN+YN L+++ + + L + + P +
Sbjct: 142 GTQRFKFLVDGIWCCSSDFPTATDAEGNLYNYLEVEANEKLGASIDERLSQVHTDLPMEE 201
Query: 61 PETSYNNLQLTAEDFAKEPP--LVPPHLQ---------------MTLLNVPASYMEIPPP 103
S E ++ E P L LQ +LN +Y E
Sbjct: 202 KSES--------EQYSTEIPAFLTSNTLQELKLPKPPSLPPHLEKCILNSNTAYKEDQSV 253
Query: 104 LSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSM 148
L P HV+LNHL + G V+AL +T R+ KYVT ++K+
Sbjct: 254 LPNPNHVLLNHLAAANTQLG--VLALSATTRYHRKYVTTAMFKNF 296
>sp|Q04739|GAL83_YEAST SNF1 protein kinase subunit beta-3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=GAL83 PE=1 SV=1
Length = 417
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 79 PPLVPPHLQMTLLN--VPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFL 136
PP +PPHL+ +LN A L P HV+LNHL K VA S R+
Sbjct: 347 PPQLPPHLENVILNSYSNAQTDNTSGALPIPNHVILNHLATSSIKHNTLCVA--SIVRYK 404
Query: 137 AKYVTVVLYKSMQ 149
KYVT +LY +Q
Sbjct: 405 QKYVTQILYTPLQ 417
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 4 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDL 41
LP G +++RF+VD +++ LP+ D GN N +++
Sbjct: 206 LPPGTHRFRFIVDNELRFSDYLPTATDQMGNFVNYMEV 243
>sp|P80387|AAKB1_PIG 5'-AMP-activated protein kinase subunit beta-1 (Fragment) OS=Sus
scrofa GN=PRKAB1 PE=1 SV=1
Length = 122
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 4 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQE 43
LP G +QY+FLVDG W + P P G V NI+ +++
Sbjct: 83 LPEGEHQYKFLVDGQWTHDPSEPVVTSQLGTVNNIIQVKK 122
>sp|F4J117|LSF1_ARATH Phosphoglucan phosphatase LSF1, chloroplastic OS=Arabidopsis
thaliana GN=LSF1 PE=1 SV=1
Length = 591
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 4 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNIL 39
L G Y Y+++++G W+++ P+ +DD GN NI+
Sbjct: 499 LTQGKYYYKYIINGDWRHSATSPTERDDRGNTNNII 534
>sp|P34164|SIP2_YEAST SNF1 protein kinase subunit beta-2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SIP2 PE=1 SV=3
Length = 415
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 82/209 (39%), Gaps = 69/209 (33%)
Query: 1 MKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQ--EYVPDDLESISSFE-- 56
+++LP G +++RF+VD + + LP+ D GN N ++++ E P + E I S E
Sbjct: 206 LRLLP-GTHRFRFIVDNELRVSDFLPTATDQMGNFVNYIEVRQPEKNPTN-EKIRSKEAD 263
Query: 57 ---PPQSPETSYNNLQLTA-------------EDFAKEPPL-----VPP----------- 84
PP S +S LQ+ ED + PPL +P
Sbjct: 264 SMRPPTSDRSSIA-LQIGKDPDDFGDGYTRFHEDLSPRPPLEYTTDIPAVFTDPSVMERY 322
Query: 85 --HLQMTLLNVPASYM---EIPPPLSR-----------------------PQHVVLNHLY 116
L N S++ ++PP L P HVVLNHL
Sbjct: 323 YYTLDRQQSNTDTSWLTPPQLPPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHLV 382
Query: 117 MQKGKSGPSVVALGSTHRFLAKYVTVVLY 145
K + + + S R+ KYVT +LY
Sbjct: 383 TSSIKH--NTLCVASIVRYKQKYVTQILY 409
>sp|B3LFN4|SIP1_YEAS1 SNF1 protein kinase subunit beta-1 OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=SIP1 PE=3 SV=2
Length = 815
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 25/38 (65%)
Query: 4 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDL 41
LP+G+Y+ +F ++G+ ++ LP+ D +GN N ++
Sbjct: 523 LPAGIYRLQFSINGILTHSNFLPTATDSEGNFVNWFEV 560
>sp|P32578|SIP1_YEAST SNF1 protein kinase subunit beta-1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SIP1 PE=1 SV=2
Length = 815
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 25/38 (65%)
Query: 4 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDL 41
LP+G+Y+ +F ++G+ ++ LP+ D +GN N ++
Sbjct: 523 LPAGIYRLQFSINGILTHSNFLPTATDSEGNFVNWFEV 560
>sp|A6ZZ19|SIP1_YEAS7 SNF1 protein kinase subunit beta-1 OS=Saccharomyces cerevisiae
(strain YJM789) GN=SIP1 PE=3 SV=2
Length = 815
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 25/38 (65%)
Query: 4 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDL 41
LP+G+Y+ +F ++G+ ++ LP+ D +GN N ++
Sbjct: 523 LPAGIYRLQFSINGILTHSNFLPTATDSEGNFVNWFEV 560
>sp|Q8RIF8|RL2_FUSNN 50S ribosomal protein L2 OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=rplB PE=3 SV=1
Length = 276
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 7/118 (5%)
Query: 29 QDDDGNVYNILDLQEYVPDDLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQM 88
Q +Y I+D + D +++ E P S N L D K L P L+
Sbjct: 55 QKGHKRLYRIIDFKRNKLDVPARVATIE--YDPNRSANIALLFYVDGEKRYILAPKGLKK 112
Query: 89 TLLNVPASYMEIPPPLS-----RPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVT 141
+ S EI P + P V ++++ +Q+GK G V + G+ R +AK T
Sbjct: 113 GDIVSAGSKAEIKPGNALKLKDMPVGVQIHNIELQRGKGGQLVRSAGTAARLVAKEGT 170
>sp|Q9Y6N6|LAMC3_HUMAN Laminin subunit gamma-3 OS=Homo sapiens GN=LAMC3 PE=1 SV=3
Length = 1575
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 58 PQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYM 117
P+ E ++ LQ T+ED A PPL P H Q L N+ + + + P S V L + +
Sbjct: 600 PREVELRFH-LQETSEDVA--PPLPPFHFQRLLANLTSLRLRVSPGPSPAGPVFLTEVRL 656
Query: 118 QKGKSGPS 125
+ G S
Sbjct: 657 TSARPGLS 664
>sp|P0DD35|C5AP_STRPQ C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain SSI-1)
GN=scpA PE=3 SV=1
Length = 1169
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 42 QEYVPDDLESISSFE--PPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYME 99
Q V ++ S SS E PPQ+P+ + + A D A + P ++PA+ E
Sbjct: 50 QTAVSEEAPSSSSKETNPPQTPDDAEETVADKANDLAPQAP-------AKTADIPATSKE 102
Query: 100 IPPPLSRPQHVVLNHLYMQKGKSGPSVVAL 129
L+ P HV L + GK +VVA+
Sbjct: 103 TIRDLNDPSHV--KTLQEKAGKGAGTVVAV 130
>sp|P0DD34|C5AP_STRP3 C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain ATCC
BAA-595 / MGAS315) GN=scpA PE=3 SV=1
Length = 1169
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 42 QEYVPDDLESISSFE--PPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYME 99
Q V ++ S SS E PPQ+P+ + + A D A + P ++PA+ E
Sbjct: 50 QTAVSEEAPSSSSKETNPPQTPDDAEETVADKANDLAPQAP-------AKTADIPATSKE 102
Query: 100 IPPPLSRPQHVVLNHLYMQKGKSGPSVVAL 129
L+ P HV L + GK +VVA+
Sbjct: 103 TIRDLNDPSHV--KTLQEKAGKGAGTVVAV 130
>sp|Q99271|NAH1_YEAST Na(+)/H(+) antiporter OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NHA1 PE=1 SV=1
Length = 985
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 24 DLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVP 83
D PS+++D G+ YN+ D ++Y + ES + FE Q + + A+ +E P +P
Sbjct: 891 DEPSSEEDLGDSYNMDDSEDYDDNAYESETEFE-RQRRLNALGEMTAPADQDDEELPPLP 949
Query: 84 PHLQ 87
Q
Sbjct: 950 VEAQ 953
>sp|Q09697|RGA8_SCHPO Rho-GTPase-activating protein 8 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rga8 PE=1 SV=1
Length = 777
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 46 PDDLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYM 98
PD + S+ S +SP +S+ LQ P +P + TL NVP S +
Sbjct: 684 PDSISSVRSHTAVESPRSSFEELQ---------PSEIPAESEFTLENVPTSLI 727
>sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana
GN=SNF4 PE=1 SV=1
Length = 487
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 4 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNIL 39
L G +QY+F VDG W++ P + G V I
Sbjct: 65 LTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIF 100
>sp|Q8WYP5|ELYS_HUMAN Protein ELYS OS=Homo sapiens GN=AHCTF1 PE=1 SV=3
Length = 2266
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 13/123 (10%)
Query: 26 PSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPH 85
P+ + N N L++ + DD +S+ + P++ + + +++ KE PP
Sbjct: 2156 PALRSRQKNTSNKNKLEDELKDDAQSVETLGKPKAKRIRTSKTKQASKNTEKESAWSPPP 2215
Query: 86 LQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLY 145
+++ L++ PL+ P V + +G LG + L+ Y +L
Sbjct: 2216 IEIRLIS----------PLASPADGVKSKPRKTTEVTG---TGLGRNRKKLSSYPKQILR 2262
Query: 146 KSM 148
+ M
Sbjct: 2263 RKM 2265
>sp|Q9UT72|RFP2_SCHPO E3 ubiquitin-protein ligase complex slx8-rfp subunit rfp2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rfp2 PE=1 SV=1
Length = 205
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 24/84 (28%)
Query: 24 DLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVP 83
DL +DDG D+ E DL I F+P + TS N
Sbjct: 21 DLTEDIEDDG-----ADVSEVTLLDLTRIPEFQPRRRIRTSRN----------------- 58
Query: 84 PHLQMTLLNVPASYMEIPPPLSRP 107
HL L NVP + IP P++RP
Sbjct: 59 -HLDANLSNVP-TINSIPSPVTRP 80
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,932,017
Number of Sequences: 539616
Number of extensions: 2732533
Number of successful extensions: 6958
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 6888
Number of HSP's gapped (non-prelim): 83
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)