Query 031974
Match_columns 150
No_of_seqs 168 out of 460
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 12:32:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qlv_B Protein SIP2, protein S 100.0 8.4E-55 2.9E-59 357.9 11.4 145 2-148 46-252 (252)
2 2v8q_B 5'-AMP-activated protei 100.0 4.9E-40 1.7E-44 231.5 7.2 84 63-148 2-87 (87)
3 2qrd_B SPCC1919.03C protein; A 100.0 6.7E-39 2.3E-43 229.6 6.1 88 60-149 2-96 (97)
4 3t4n_B SNF1 protein kinase sub 100.0 3.5E-36 1.2E-40 220.4 2.0 75 74-150 33-112 (113)
5 1z0n_A 5'-AMP-activated protei 99.5 2.9E-14 9.8E-19 101.0 5.3 47 2-48 49-95 (96)
6 3nme_A Ptpkis1 protein, SEX4 g 99.4 1.1E-13 3.8E-18 114.6 5.6 42 2-43 212-254 (294)
7 4aee_A Alpha amylase, catalyti 98.3 3.8E-07 1.3E-11 82.6 3.5 39 1-39 59-102 (696)
8 4aef_A Neopullulanase (alpha-a 97.3 0.00014 4.8E-09 65.0 3.8 27 2-28 57-83 (645)
9 2z0b_A GDE5, KIAA1434, putativ 90.1 0.1 3.6E-06 37.9 1.4 14 2-15 61-75 (131)
10 3c8d_A Enterochelin esterase; 82.6 0.72 2.5E-05 38.5 2.8 44 3-46 85-154 (403)
11 1mhx_A Immunoglobulin-binding 80.2 0.89 3E-05 29.2 1.9 14 15-28 48-61 (65)
12 1igd_A Protein G; immunoglobul 78.7 1.1 3.7E-05 28.8 2.0 13 15-27 44-56 (61)
13 3fil_A Immunoglobulin G-bindin 77.6 0.78 2.7E-05 28.9 1.1 13 15-27 39-51 (56)
14 2r9f_A Calpain-1 catalytic sub 75.3 1.7 5.8E-05 36.2 2.8 24 5-28 120-146 (339)
15 2nqa_A Calpain 8; calpain, cal 74.0 1.4 4.8E-05 36.4 2.0 24 5-28 115-141 (326)
16 1ac0_A Glucoamylase; hydrolase 72.7 0.96 3.3E-05 31.2 0.6 15 2-16 59-74 (108)
17 2rpv_A Immunoglobulin G-bindin 72.5 1.9 6.4E-05 28.6 1.9 13 15-27 58-70 (75)
18 4gln_D D-RFX001; heterochiral 71.6 1.8 6E-05 27.3 1.6 16 13-28 36-52 (56)
19 1ziv_A Calpain 9; cysteine pro 70.8 1.8 6.2E-05 36.0 2.0 24 5-28 119-145 (339)
20 1pgx_A Protein G; immunoglobul 68.8 2 6.9E-05 29.0 1.5 14 15-28 52-65 (83)
21 1ew4_A CYAY protein; friedreic 62.9 5.9 0.0002 27.8 3.1 18 6-25 67-84 (106)
22 3bow_A Calpain-2 catalytic sub 60.5 4.6 0.00016 36.5 2.7 24 5-28 135-161 (714)
23 1qxp_A MU-like calpain; M-calp 59.9 6.1 0.00021 36.3 3.4 25 5-29 135-162 (900)
24 4h40_A Putative cell adhesion 58.5 5.1 0.00017 33.3 2.4 41 2-42 108-173 (327)
25 3goe_A DNA repair protein RAD6 54.6 6.6 0.00023 26.7 2.0 29 11-39 51-80 (82)
26 2khu_A Immunoglobulin G-bindin 51.7 3.1 0.00011 29.5 0.0 15 15-29 39-53 (108)
27 1zxh_A Immunoglobulin G bindin 50.7 5.6 0.00019 25.1 1.1 14 15-28 39-52 (56)
28 3oeq_A Frataxin homolog, mitoc 47.3 10 0.00035 27.5 2.2 19 6-25 86-104 (123)
29 3bwu_D FIMD, outer membrane us 46.8 17 0.00057 25.4 3.3 24 4-27 28-51 (125)
30 2wan_A Pullulanase; hydrolase, 46.7 7.7 0.00026 36.3 1.8 18 3-20 204-221 (921)
31 1pn5_A Nacht-, LRR- and PYD-co 41.5 5.8 0.0002 30.1 0.1 21 15-35 39-59 (159)
32 3t3l_A Frataxin, mitochondrial 40.2 14 0.00048 26.8 2.0 19 6-25 80-98 (129)
33 2jox_A Churchill protein; zinc 37.4 15 0.00051 26.0 1.7 13 8-20 69-81 (106)
34 3ui3_A Immunoglobulin G-bindin 35.0 10 0.00036 28.7 0.6 19 15-33 39-57 (160)
35 1nh2_D Transcription initiatio 34.4 25 0.00086 25.4 2.6 18 9-27 66-83 (121)
36 3n08_A Putative phosphatidylet 29.5 23 0.0008 26.1 1.8 11 5-15 104-114 (153)
37 2xzm_F EIF1; ribosome, transla 29.0 53 0.0018 22.6 3.5 21 123-143 15-35 (101)
38 3a76_A Gamma-hexachlorocyclohe 26.7 49 0.0017 23.7 3.1 21 6-26 130-151 (176)
39 2chc_A Protein RV3472; hypothe 24.3 59 0.002 22.7 3.1 22 6-27 108-130 (170)
40 1ibx_B Chimera of IGG binding 23.9 17 0.00056 27.2 0.0 13 15-27 39-51 (145)
41 1xbr_A Protein (T protein); co 23.9 31 0.0011 26.3 1.5 18 6-24 57-74 (184)
42 4b0m_A F1 capsule-anchoring pr 23.7 63 0.0022 23.0 3.2 23 5-27 28-50 (136)
43 1nvp_D Transcription initiatio 23.0 53 0.0018 23.1 2.6 22 8-30 61-82 (108)
44 1pfs_A PF3 SSDBP, PF3 single-s 22.6 97 0.0033 20.6 3.6 23 3-25 47-74 (78)
45 1yb3_A Hypothetical protein; s 21.4 40 0.0014 25.8 1.7 10 15-24 54-63 (175)
No 1
>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1
Probab=100.00 E-value=8.4e-55 Score=357.89 Aligned_cols=145 Identities=28% Similarity=0.421 Sum_probs=90.8
Q ss_pred cccCCeeEEEEEEeCCEEEEcCCCCeeeCCCCCccceeecccCCCCcc------------------c-------------
Q 031974 2 KVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDL------------------E------------- 50 (150)
Q Consensus 2 ~~Lp~G~~~yKFiVDG~W~~d~~~p~~~d~~G~~nN~i~v~~~~p~~~------------------~------------- 50 (150)
+.|++|.|+|||+|||+|++|++.|++.|+.|++||+|+|.+..+... .
T Consensus 46 v~LppG~y~YKFiVDG~w~~Dp~~p~~~d~~G~~nNvi~V~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 125 (252)
T 2qlv_B 46 LRLLPGTHRFRFIVDNELRVSDFLPTATDQMGNFVNYIEVRQPEKNPTNEKIRSKEADSMRPPTSDRSSIALQIGKDPDD 125 (252)
T ss_dssp EEECSEEEEEEEEETTEEECCTTSCEEBCSSCCCEEEEEECC--------------------------------------
T ss_pred EECCCCEEEEEEEECCEEEeCCCCCEEecCCCcCcceeeccCccccccccccccccccccccccccccccccccccCccc
Confidence 479999999999999999999999999999999999999987421110 0
Q ss_pred ---cccCC--CCCCCCCCCCccccCCc-------cc--------------ccCCCCCCCccccccccCCCCCC-----CC
Q 031974 51 ---SISSF--EPPQSPETSYNNLQLTA-------ED--------------FAKEPPLVPPHLQMTLLNVPASY-----ME 99 (150)
Q Consensus 51 ---~~~~~--~~~~sp~~~Y~~~~p~~-------~~--------------~~~~PP~LPphL~~~iLN~~~~~-----~~ 99 (150)
+.+++ +.+.+|.++|+|++|.. |+ .+++||+|||||+++|||+++.. .|
T Consensus 126 ~~~~~~~~~~~~~~~p~~~y~~eiP~~~~~~~~~e~~~~~~d~~~~~~~~~~~~PP~LPphL~~~iLN~~~~~~~~~~~~ 205 (252)
T 2qlv_B 126 FGDGYTRFHEDLSPRPPLEYTTDIPAVFTDPSVMERYYYTLDRQQSNTDTSWLTPPQLPPQLENVILNKYYATQDQFNEN 205 (252)
T ss_dssp --------------------CCCCCGGGTCHHHHHHHHHHHCC-----------CCCCCCC-------------------
T ss_pred cccccccccccCCCCCcccccccCCchhcccchhhhhhhcccccccccccccCCCCCCChhhcchhcCCCCccccccccC
Confidence 11112 45678899999999963 22 24899999999999999998775 47
Q ss_pred CCCCCCCCCeeeeceeEEeccccCCcEEEEeeeeeeCceeeEEEEEeec
Q 031974 100 IPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSM 148 (150)
Q Consensus 100 ~~~~Lp~P~HVvLNHLy~~si~~~~~vl~l~~T~Ryk~KyvTtvlYkp~ 148 (150)
++++||+||||||||||++|| |+||||||||||||+|||||||||||
T Consensus 206 ~~~~Lp~PnHVvLNHL~~~sI--k~~vlal~~T~RYk~KyVTtvlYkP~ 252 (252)
T 2qlv_B 206 NSGALPIPNHVVLNHLVTSSI--KHNTLCVASIVRYKQKYVTQILYTPI 252 (252)
T ss_dssp ---------CCSCCBCEECCC--CSSEEEEEEEEEETTEEEEEEEEEEC
T ss_pred CcccCCCCCEEEeeeEEEecc--cCCEEEEeeeeeecceeEEEEEEeeC
Confidence 899999999999999999999 57999999999999999999999997
No 2
>2v8q_B 5'-AMP-activated protein kinase subunit beta-2; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Homo sapiens} SCOP: d.353.1.1 PDB: 2v92_B* 2v9j_B* 2y8l_B* 2y8q_B* 2y94_B* 2ya3_B*
Probab=100.00 E-value=4.9e-40 Score=231.47 Aligned_cols=84 Identities=42% Similarity=0.671 Sum_probs=67.5
Q ss_pred CCCccccC--CcccccCCCCCCCccccccccCCCCCCCCCCCCCCCCCeeeeceeEEeccccCCcEEEEeeeeeeCceee
Q 031974 63 TSYNNLQL--TAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYV 140 (150)
Q Consensus 63 ~~Y~~~~p--~~~~~~~~PP~LPphL~~~iLN~~~~~~~~~~~Lp~P~HVvLNHLy~~si~~~~~vl~l~~T~Ryk~Kyv 140 (150)
++|||+++ ..+|++++||.||+||+++|||.+++.+||++.||+|+||||||||++||| ++|||+|+|||||+|||
T Consensus 2 ~~y~q~~~~~~~~~~~k~PP~LPphL~~~iLN~~~~~~~d~~~lp~P~HVvLNHLy~~sik--~~v~alg~T~Ry~~KyV 79 (87)
T 2v8q_B 2 GPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIK--DSVMVLSATHRYKKKYV 79 (87)
T ss_dssp ---CCCCCCCCCCCSSSSCCBSCSSCCSEEECCCCC----------CCTTCTTBCEECCCB--TTEEEEEEEEEETTEEE
T ss_pred CcccccCCCCCccccccCCCCCChhhceeccCCCCCCCCCcccCCCCCEEEeeeEEEeccc--CCeEEEeeeeeecceeE
Confidence 57999975 468999999999999999999999888899999999999999999999995 79999999999999999
Q ss_pred EEEEEeec
Q 031974 141 TVVLYKSM 148 (150)
Q Consensus 141 TtvlYkp~ 148 (150)
|+|||||+
T Consensus 80 T~vlYkP~ 87 (87)
T 2v8q_B 80 TTLLYKPI 87 (87)
T ss_dssp EEEEEEEC
T ss_pred EEEEEeeC
Confidence 99999996
No 3
>2qrd_B SPCC1919.03C protein; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} SCOP: d.353.1.1 PDB: 2ooy_B* 2qr1_B* 2qrc_B* 2oox_B* 2qre_B*
Probab=100.00 E-value=6.7e-39 Score=229.59 Aligned_cols=88 Identities=34% Similarity=0.546 Sum_probs=79.7
Q ss_pred CCCCCCccccCCcc-----c--ccCCCCCCCccccccccCCCCCCCCCCCCCCCCCeeeeceeEEeccccCCcEEEEeee
Q 031974 60 SPETSYNNLQLTAE-----D--FAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGST 132 (150)
Q Consensus 60 sp~~~Y~~~~p~~~-----~--~~~~PP~LPphL~~~iLN~~~~~~~~~~~Lp~P~HVvLNHLy~~si~~~~~vl~l~~T 132 (150)
|+.++|++++|... + .+++||.||+||+++|||.+++.+||++.||+|+||||||||++||| +||||+|+|
T Consensus 2 ~~~~~y~~eIP~~~~~~~~~~~~~~~PP~LPphL~~~iLN~~~~~~~d~~~lp~P~HVvLNHLy~~sik--~~vlalg~T 79 (97)
T 2qrd_B 2 SESEQYSTEIPAFLTSNTLQELKLPKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVLLNHLAAANTQ--LGVLALSAT 79 (97)
T ss_dssp --CCCCBSSCCGGGSCC--CCSCCCCCCBCCGGGSCCGGGCCTTHHHHTTBCCCCCGGGTTBCEEECCS--SSSEEEEEE
T ss_pred CccccccccCChhhhcccccccccCCCCCCChhhcccccCCCCCCCCCcccCCCCCEEEeeeeeeeccc--CCeEEEeee
Confidence 57889999998642 3 56899999999999999998888889999999999999999999995 799999999
Q ss_pred eeeCceeeEEEEEeecc
Q 031974 133 HRFLAKYVTVVLYKSMQ 149 (150)
Q Consensus 133 ~Ryk~KyvTtvlYkp~~ 149 (150)
||||+||||+|||||++
T Consensus 80 ~Ry~~KyVT~vlYkP~~ 96 (97)
T 2qrd_B 80 TRYHRKYVTTAMFKNFD 96 (97)
T ss_dssp EEETTEEEEEEEEECCC
T ss_pred eeeeceeEEEEEEecCC
Confidence 99999999999999986
No 4
>3t4n_B SNF1 protein kinase subunit beta-2; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_B* 3te5_B*
Probab=100.00 E-value=3.5e-36 Score=220.44 Aligned_cols=75 Identities=33% Similarity=0.486 Sum_probs=67.6
Q ss_pred cccCCCCCCCccccccccCCCCCC-----CCCCCCCCCCCeeeeceeEEeccccCCcEEEEeeeeeeCceeeEEEEEeec
Q 031974 74 DFAKEPPLVPPHLQMTLLNVPASY-----MEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSM 148 (150)
Q Consensus 74 ~~~~~PP~LPphL~~~iLN~~~~~-----~~~~~~Lp~P~HVvLNHLy~~si~~~~~vl~l~~T~Ryk~KyvTtvlYkp~ 148 (150)
.-+++||.|||||+++|||.++.. .|+++.||+|+||||||||++||| +||||+|+|||||+||||+|||||+
T Consensus 33 ~~~~~PP~LPphL~~~iLN~~~~~~~~~~~d~~~~Lp~P~HVvLNHLy~~sik--~~vlalg~T~RYk~KyVT~VlYKP~ 110 (113)
T 3t4n_B 33 TSWLTPPQLPPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHLVTSSIK--HNTLCVASIVRYKQKYVTQILYTPI 110 (113)
T ss_dssp CGGGSCCBCCGGGCHHHHHHHHHHHHHHHHHCCSCCCCCCGGGTTBCEECCCB--TTEEEEEEEEEETTEEEEEEEEEEC
T ss_pred CcCCCCCCCChhhcccccCCCccccccccCCCcccCCCCCeEeeeeeeeeccc--CceEEEeeeeeeeceeEEEEEEeec
Confidence 346899999999999999987543 367899999999999999999995 6999999999999999999999999
Q ss_pred cC
Q 031974 149 QR 150 (150)
Q Consensus 149 ~~ 150 (150)
||
T Consensus 111 q~ 112 (113)
T 3t4n_B 111 ES 112 (113)
T ss_dssp C-
T ss_pred cc
Confidence 97
No 5
>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A
Probab=99.48 E-value=2.9e-14 Score=100.98 Aligned_cols=47 Identities=34% Similarity=0.576 Sum_probs=42.9
Q ss_pred cccCCeeEEEEEEeCCEEEEcCCCCeeeCCCCCccceeecccCCCCc
Q 031974 2 KVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDD 48 (150)
Q Consensus 2 ~~Lp~G~~~yKFiVDG~W~~d~~~p~~~d~~G~~nN~i~v~~~~p~~ 48 (150)
+.|++|.|+|||+|||+|++||..|++.|+.|+.||+|+|.+..++.
T Consensus 49 v~l~~G~~~YKf~VdG~~~~DP~~~~~~d~~G~~Nnvi~V~~~d~~~ 95 (96)
T 1z0n_A 49 LDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEV 95 (96)
T ss_dssp EEECSEEEEEEEEETTEEECCTTSCEEECTTSCEEEEEEECSCTTEE
T ss_pred EEccCCCEEEEEEECCeEEcCCCCCeEECCCCCEeEEEEEcCCCcCc
Confidence 36899999999999999999999999999999999999998766543
No 6
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=99.42 E-value=1.1e-13 Score=114.60 Aligned_cols=42 Identities=26% Similarity=0.682 Sum_probs=39.7
Q ss_pred cccCCeeEEEEEEeCCEEEEcCCCCee-eCCCCCccceeeccc
Q 031974 2 KVLPSGVYQYRFLVDGLWKYAPDLPST-QDDDGNVYNILDLQE 43 (150)
Q Consensus 2 ~~Lp~G~~~yKFiVDG~W~~d~~~p~~-~d~~G~~nN~i~v~~ 43 (150)
+.||||.|+|||+|||+|++|++.|.+ .|+.|++||+|+|.+
T Consensus 212 ~~L~~G~y~YkFiVDG~w~~d~~~~~~~~d~~G~~nn~~~v~~ 254 (294)
T 3nme_A 212 RELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGHTNNYAKVVD 254 (294)
T ss_dssp EEECSEEEEEEEEETTEEECCTTSCEECSCTTSCCEEEEEECC
T ss_pred EECCCceEEEEEEECCEEeeCCCCCeeeECCCCCEeEEEEECC
Confidence 579999999999999999999999976 799999999999987
No 7
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}
Probab=98.26 E-value=3.8e-07 Score=82.61 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=34.0
Q ss_pred CcccCCeeEEEEEEeCCEEE--EcCCCCe---eeCCCCCcccee
Q 031974 1 MKVLPSGVYQYRFLVDGLWK--YAPDLPS---TQDDDGNVYNIL 39 (150)
Q Consensus 1 i~~Lp~G~~~yKFiVDG~W~--~d~~~p~---~~d~~G~~nN~i 39 (150)
++.||||+|||||+|||+|+ +||+.|. +.|..|.-|++.
T Consensus 59 ~~~L~~g~~~y~f~vdg~~~~~~d~~~~~~~y~~~~~g~~n~~~ 102 (696)
T 4aee_A 59 YLKLWPGEYGYGFQIDNDFENVLDPDNEEKKCVHTSFFPEYKKC 102 (696)
T ss_dssp EEEECSEEEEEEEEETTCCSCCCCTTCCCEEEEECSSCTTSEEE
T ss_pred EEEcCCceEEEEEEECCEEeecCCCCCCcccccccCCcccccee
Confidence 36899999999999999999 8899885 458899988884
No 8
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=97.29 E-value=0.00014 Score=65.05 Aligned_cols=27 Identities=41% Similarity=0.839 Sum_probs=24.4
Q ss_pred cccCCeeEEEEEEeCCEEEEcCCCCee
Q 031974 2 KVLPSGVYQYRFLVDGLWKYAPDLPST 28 (150)
Q Consensus 2 ~~Lp~G~~~yKFiVDG~W~~d~~~p~~ 28 (150)
+.||||+|+|||+|||+|..|+..|..
T Consensus 57 v~L~~G~y~Y~f~vdg~~~~dp~n~~~ 83 (645)
T 4aef_A 57 IALPEGVWHYAFSIDGKFVLDPDNPER 83 (645)
T ss_dssp EEECSEEEEEEEEETTEEECCTTCCCE
T ss_pred EEeCCceEEEEEEECCeEecCCCCCCc
Confidence 579999999999999999999988743
No 9
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}
Probab=90.07 E-value=0.1 Score=37.94 Aligned_cols=14 Identities=50% Similarity=0.833 Sum_probs=11.7
Q ss_pred cccCCee-EEEEEEe
Q 031974 2 KVLPSGV-YQYRFLV 15 (150)
Q Consensus 2 ~~Lp~G~-~~yKFiV 15 (150)
+.||.|. ++|||++
T Consensus 61 v~lp~~~~~eYKyvi 75 (131)
T 2z0b_A 61 IVLSRGVSVQYRYFK 75 (131)
T ss_dssp EEECTTCCEEEEEEE
T ss_pred EEcCCCCcEEEEEEE
Confidence 4678885 9999998
No 10
>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A*
Probab=82.64 E-value=0.72 Score=38.50 Aligned_cols=44 Identities=16% Similarity=0.127 Sum_probs=36.1
Q ss_pred ccCCeeE-EEEEEeC------------------------CEEEEcCCCCeeeCC-CCCccceeecccCCC
Q 031974 3 VLPSGVY-QYRFLVD------------------------GLWKYAPDLPSTQDD-DGNVYNILDLQEYVP 46 (150)
Q Consensus 3 ~Lp~G~~-~yKFiVD------------------------G~W~~d~~~p~~~d~-~G~~nN~i~v~~~~p 46 (150)
.||+|-| .|.|+|| |..+.||..|..... .|...+++++.+..+
T Consensus 85 ~l~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~r~~w~~~~~~~~~DP~n~~~~~~~~~~~~s~~~~p~~~~ 154 (403)
T 3c8d_A 85 QLNANWRGSYCFIPTERDDIFSAPSPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEMPQAPL 154 (403)
T ss_dssp EEETTCEEEEEEEEESCCSTTCCC--CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEECTTCCC
T ss_pred EECCCcEEEEEEEecCcccccccccchHHHHHHHHHHhhcccccCCCCCCCCCCCCCcccccccCCCCCc
Confidence 5889999 9999999 788889999976544 488889999976544
No 11
>1mhx_A Immunoglobulin-binding protein G; alpha-beta protein, redesigned first beta-hairpin, immune SY; 1.80A {Finegoldia magna} SCOP: d.15.7.1 PDB: 1mi0_A
Probab=80.24 E-value=0.89 Score=29.24 Aligned_cols=14 Identities=36% Similarity=0.719 Sum_probs=12.0
Q ss_pred eCCEEEEcCCCCee
Q 031974 15 VDGLWKYAPDLPST 28 (150)
Q Consensus 15 VDG~W~~d~~~p~~ 28 (150)
|||+|.+|+.-.+-
T Consensus 48 vdgeWsYD~ATkTF 61 (65)
T 1mhx_A 48 VDGEWTYDDAAKTF 61 (65)
T ss_dssp CCSEEEEETTTTEE
T ss_pred CccEEEecCceeEE
Confidence 79999999988753
No 12
>1igd_A Protein G; immunoglobulin binding protein; 1.10A {Streptococcus SP} SCOP: d.15.7.1 PDB: 1igc_A 2igd_A 2igh_A 1qkz_A 2igg_A 1uwx_A 3mp9_A
Probab=78.67 E-value=1.1 Score=28.79 Aligned_cols=13 Identities=38% Similarity=0.946 Sum_probs=11.4
Q ss_pred eCCEEEEcCCCCe
Q 031974 15 VDGLWKYAPDLPS 27 (150)
Q Consensus 15 VDG~W~~d~~~p~ 27 (150)
|||+|.+|+.-.+
T Consensus 44 vdgew~yd~atkt 56 (61)
T 1igd_A 44 VDGVWTYDDATKT 56 (61)
T ss_dssp CCCEEEEETTTTE
T ss_pred CCceEeecCceeE
Confidence 7999999998775
No 13
>3fil_A Immunoglobulin G-binding protein G; dimerization, beta sheet, alpha helix, improved hydrophobic packing of core residues, protein binding; HET: FME; 0.88A {Streptococcus SP} SCOP: d.15.7.1 PDB: 2qmt_A 2jsv_X 2ju6_X 2k0p_A 2kq4_X 2kwd_A 2lgi_A 2gi9_A 1gb1_A 1pga_A 1pgb_A 2gb1_A 3gb1_A 2klk_A 2rmm_A 2onq_A 2on8_A 2j52_A 2j53_A 3v3x_A* ...
Probab=77.64 E-value=0.78 Score=28.89 Aligned_cols=13 Identities=38% Similarity=0.828 Sum_probs=11.1
Q ss_pred eCCEEEEcCCCCe
Q 031974 15 VDGLWKYAPDLPS 27 (150)
Q Consensus 15 VDG~W~~d~~~p~ 27 (150)
|||+|.+|+.-.+
T Consensus 39 vdgeW~YD~ATkT 51 (56)
T 3fil_A 39 VDGEWTYDDATKT 51 (56)
T ss_dssp CCCEEEEEGGGTE
T ss_pred CccEEEecCceeE
Confidence 7999999998765
No 14
>2r9f_A Calpain-1 catalytic subunit; protease, peptidase, inhibitor, alpha-ketoamide, hydrolase, thiol protease; HET: K2Z; 1.60A {Rattus norvegicus} SCOP: d.3.1.3 PDB: 1tlo_A* 2g8e_A* 1tl9_A* 2nqg_A* 2nqi_A* 2r9c_A* 2g8j_A* 1kxr_A 2ary_A 1zcm_A* 1mdw_A
Probab=75.27 E-value=1.7 Score=36.15 Aligned_cols=24 Identities=21% Similarity=0.546 Sum_probs=20.9
Q ss_pred CCeeEEEEEEeCCEEE---EcCCCCee
Q 031974 5 PSGVYQYRFLVDGLWK---YAPDLPST 28 (150)
Q Consensus 5 p~G~~~yKFiVDG~W~---~d~~~p~~ 28 (150)
+.|.|++||..+|+|+ .|+.+|+.
T Consensus 120 ~~G~y~vr~~~~G~W~~VvVDD~LP~~ 146 (339)
T 2r9f_A 120 YAGIFHFQLWQFGEWVDVVVDDLLPTK 146 (339)
T ss_dssp CCSEEEEEEEETTEEEEEEEESCEEEE
T ss_pred CCceEEEEEeeCCEEEEEEEcCCCccc
Confidence 4599999999999998 67888875
No 15
>2nqa_A Calpain 8; calpain, calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC; HET: AR7; 2.20A {Homo sapiens}
Probab=73.96 E-value=1.4 Score=36.39 Aligned_cols=24 Identities=25% Similarity=0.696 Sum_probs=20.9
Q ss_pred CCeeEEEEEEeCCEEE---EcCCCCee
Q 031974 5 PSGVYQYRFLVDGLWK---YAPDLPST 28 (150)
Q Consensus 5 p~G~~~yKFiVDG~W~---~d~~~p~~ 28 (150)
+.|.|++||..+|+|+ .|+.+|+.
T Consensus 115 ~~G~y~vr~~~~G~w~~VvVDD~lP~~ 141 (326)
T 2nqa_A 115 YAGIFHFQFWQYGEWVEVVIDDRLPTK 141 (326)
T ss_dssp CSSEEEEEEECSSSEEEEEEECCEEEE
T ss_pred CCceEEEEEEECCEEEEEEEeCcCccc
Confidence 4599999999999998 68888875
No 16
>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A
Probab=72.73 E-value=0.96 Score=31.22 Aligned_cols=15 Identities=33% Similarity=0.822 Sum_probs=12.3
Q ss_pred cccCCee-EEEEEEeC
Q 031974 2 KVLPSGV-YQYRFLVD 16 (150)
Q Consensus 2 ~~Lp~G~-~~yKFiVD 16 (150)
+.||.|. ++|||+|.
T Consensus 59 v~lp~~~~~eYKy~v~ 74 (108)
T 1ac0_A 59 VTLPAGESFEYKFIRI 74 (108)
T ss_dssp ECCCSSSCEECCCEEC
T ss_pred EEeCCCCeEEEEEEEE
Confidence 4688885 99999994
No 17
>2rpv_A Immunoglobulin G-binding protein G; lanthanide binding peptide, LBT, paramagnetic effect, olivia, cell WALL, IGG-binding protein; NMR {Streptococcus SP}
Probab=72.55 E-value=1.9 Score=28.60 Aligned_cols=13 Identities=38% Similarity=0.828 Sum_probs=10.9
Q ss_pred eCCEEEEcCCCCe
Q 031974 15 VDGLWKYAPDLPS 27 (150)
Q Consensus 15 VDG~W~~d~~~p~ 27 (150)
|||+|.+|+.-.+
T Consensus 58 vdgeWsYD~ATkT 70 (75)
T 2rpv_A 58 VDGEWTYDDATKT 70 (75)
T ss_dssp CCSEEEEETTTTE
T ss_pred CCceEeecCceeE
Confidence 6899999988765
No 18
>4gln_D D-RFX001; heterochiral protein-protein complex, D-protein antagonist, factor-inihibitor complex; HET: DTY DSG DTH DVA DPN DTR DGL DIL DAS; 1.60A {Synthetic} PDB: 4gls_D* 4gls_C*
Probab=71.58 E-value=1.8 Score=27.31 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=12.8
Q ss_pred EEeC-CEEEEcCCCCee
Q 031974 13 FLVD-GLWKYAPDLPST 28 (150)
Q Consensus 13 FiVD-G~W~~d~~~p~~ 28 (150)
.-|| |+|.+|+.-.+-
T Consensus 36 n~~d~geWtYddaTKTF 52 (56)
T 4gln_D 36 XFSDFDDWTYDDATKTF 52 (56)
T ss_pred cCCcCCeeEecCcceeE
Confidence 4578 999999987753
No 19
>1ziv_A Calpain 9; cysteine protease, papain, calcium-dependent, thiol protease, structural genomics consortium, SGC, hydrolase; 2.31A {Homo sapiens} SCOP: d.3.1.3 PDB: 2p0r_A*
Probab=70.78 E-value=1.8 Score=35.99 Aligned_cols=24 Identities=21% Similarity=0.617 Sum_probs=21.0
Q ss_pred CCeeEEEEEEeCCEEE---EcCCCCee
Q 031974 5 PSGVYQYRFLVDGLWK---YAPDLPST 28 (150)
Q Consensus 5 p~G~~~yKFiVDG~W~---~d~~~p~~ 28 (150)
+.|.|++||..+|+|+ .|+.+|+.
T Consensus 119 ~~G~y~~r~~~~G~W~~VvVDD~LP~~ 145 (339)
T 1ziv_A 119 YAGIFHFQFWQHSEWLDVVIDDRLPTF 145 (339)
T ss_dssp CCSEEEEEEECSSSEEEEEEECCEEES
T ss_pred cceEEEEEEeeCCEEEEEEEcCCCccC
Confidence 4699999999999998 78888874
No 20
>1pgx_A Protein G; immunoglobulin binding protein; 1.66A {Streptococcus} SCOP: d.15.7.1
Probab=68.81 E-value=2 Score=29.01 Aligned_cols=14 Identities=36% Similarity=0.826 Sum_probs=11.8
Q ss_pred eCCEEEEcCCCCee
Q 031974 15 VDGLWKYAPDLPST 28 (150)
Q Consensus 15 VDG~W~~d~~~p~~ 28 (150)
|||+|.+|+.-.+-
T Consensus 52 vdgeWsYD~ATkTF 65 (83)
T 1pgx_A 52 VDGVWTYDDATKTF 65 (83)
T ss_dssp CCEEEEEETTTTEE
T ss_pred CCceEeecccceeE
Confidence 68999999998753
No 21
>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A
Probab=62.92 E-value=5.9 Score=27.79 Aligned_cols=18 Identities=17% Similarity=0.457 Sum_probs=14.1
Q ss_pred CeeEEEEEEeCCEEEEcCCC
Q 031974 6 SGVYQYRFLVDGLWKYAPDL 25 (150)
Q Consensus 6 ~G~~~yKFiVDG~W~~d~~~ 25 (150)
.| |+|.|. ||+|++.-+-
T Consensus 67 sG-~hfd~~-~~~Wi~~r~g 84 (106)
T 1ew4_A 67 GG-YHFDLK-GDEWICDRSG 84 (106)
T ss_dssp CE-EEEEEE-TTEEEETTTC
T ss_pred Cc-eeeeec-CCEEEECCCC
Confidence 46 999985 8999987554
No 22
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L
Probab=60.48 E-value=4.6 Score=36.48 Aligned_cols=24 Identities=25% Similarity=0.690 Sum_probs=20.9
Q ss_pred CCeeEEEEEEeCCEEE---EcCCCCee
Q 031974 5 PSGVYQYRFLVDGLWK---YAPDLPST 28 (150)
Q Consensus 5 p~G~~~yKFiVDG~W~---~d~~~p~~ 28 (150)
+.|.|++||..+|+|+ .|+.+|+.
T Consensus 135 ~~G~y~~~~~~~G~w~~VvvDD~lP~~ 161 (714)
T 3bow_A 135 YAGIFHFQFWQYGEWVEVVVDDRLPTK 161 (714)
T ss_dssp CSSEEEEEEEETTEEEEEEEESCEEEE
T ss_pred CceEEEEEEeeCCEEEEEEEeccceee
Confidence 3699999999999998 78888875
No 23
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Probab=59.93 E-value=6.1 Score=36.34 Aligned_cols=25 Identities=20% Similarity=0.537 Sum_probs=21.4
Q ss_pred CCeeEEEEEEeCCEEE---EcCCCCeee
Q 031974 5 PSGVYQYRFLVDGLWK---YAPDLPSTQ 29 (150)
Q Consensus 5 p~G~~~yKFiVDG~W~---~d~~~p~~~ 29 (150)
+.|.|++||..+|+|+ .|+.+|+..
T Consensus 135 ~~G~y~~~~~~~G~w~~V~vDD~lP~~~ 162 (900)
T 1qxp_A 135 YAGIFHFQLWQFGEWVDVVVDDLLPTKD 162 (900)
T ss_dssp CSSEEEEEEEETTEEEEEEEESCBCEET
T ss_pred cCceEEEEEeECCEEEEEEECCcccccC
Confidence 3599999999999998 788888753
No 24
>4h40_A Putative cell adhesion protein; fimbrial protein, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 2.57A {Bacteroides fragilis}
Probab=58.51 E-value=5.1 Score=33.29 Aligned_cols=41 Identities=27% Similarity=0.523 Sum_probs=24.0
Q ss_pred cccCCeeEEEEEE-------------e-CCEEEEcCCC----------C-eeeCCCCCccceeecc
Q 031974 2 KVLPSGVYQYRFL-------------V-DGLWKYAPDL----------P-STQDDDGNVYNILDLQ 42 (150)
Q Consensus 2 ~~Lp~G~~~yKFi-------------V-DG~W~~d~~~----------p-~~~d~~G~~nN~i~v~ 42 (150)
|.|++|+|.||-+ + +|+|..+-|. + +..|+.|.+||+-.|.
T Consensus 108 Lyl~aGTY~Fr~lsPAk~l~~dg~~~I~NG~yliAtd~ry~eT~~t~vtit~~~e~g~~nn~~~v~ 173 (327)
T 4h40_A 108 LYMKAGTYYFRILSPAKALNSKGFVNIGNGEYLLATDDRYTQTAMTAVTITKIDEGGTLNNVQTLY 173 (327)
T ss_dssp EEECSEEEEEEEEESCCCBCTTSSBCCCSSCCCEECCTTBTTTSCEEEEEC---------CEEEEE
T ss_pred eeecCceEEEEeeccchhcccCceEEecCCcEEEecCCceeeeeccceEEEeecCCCCcCceeEEE
Confidence 5689999999976 2 4899888775 1 2568899898877664
No 25
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=54.56 E-value=6.6 Score=26.70 Aligned_cols=29 Identities=17% Similarity=0.417 Sum_probs=21.6
Q ss_pred EEEEeCCEEEEcCCCCeeeC-CCCCcccee
Q 031974 11 YRFLVDGLWKYAPDLPSTQD-DDGNVYNIL 39 (150)
Q Consensus 11 yKFiVDG~W~~d~~~p~~~d-~~G~~nN~i 39 (150)
.+|+.||.|....+.|...+ ++|-+.+++
T Consensus 51 IrllFDGdRLdp~~tp~DlemeD~D~IDvm 80 (82)
T 3goe_A 51 IRLEFEGEWLDPNDQVQSTELEDEDQVSVV 80 (82)
T ss_dssp CEEEETTEECCTTSBGGGSSCCTTCEEEEE
T ss_pred EEEEEcCcccCccCChhhhCCcCCceeeee
Confidence 57999999999988887655 566555543
No 26
>2khu_A Immunoglobulin G-binding protein G, DNA polymerase IOTA; UBM, ubiquitin-binding domain, translesion synthesis, TLS, ubiquitin-binding protein; NMR {Streptococcus SP} PDB: 2khw_A 2l0f_B*
Probab=51.70 E-value=3.1 Score=29.49 Aligned_cols=15 Identities=33% Similarity=0.669 Sum_probs=0.0
Q ss_pred eCCEEEEcCCCCeee
Q 031974 15 VDGLWKYAPDLPSTQ 29 (150)
Q Consensus 15 VDG~W~~d~~~p~~~ 29 (150)
|||+|.+|+.-.+-+
T Consensus 39 vdgew~yd~atktft 53 (108)
T 2khu_A 39 VDGEWTYDDATKTFT 53 (108)
T ss_dssp ---------------
T ss_pred CCceEeecCcceeEE
Confidence 899999999987644
No 27
>1zxh_A Immunoglobulin G binding protein G; IGG-binding, phage display, immune system/protein binding complex; NMR {Streptococcus SP}
Probab=50.73 E-value=5.6 Score=25.15 Aligned_cols=14 Identities=29% Similarity=0.736 Sum_probs=11.7
Q ss_pred eCCEEEEcCCCCee
Q 031974 15 VDGLWKYAPDLPST 28 (150)
Q Consensus 15 VDG~W~~d~~~p~~ 28 (150)
|||+|.+|+.-.+-
T Consensus 39 ~dg~w~yd~atktf 52 (56)
T 1zxh_A 39 VQGVWTYDDATKTF 52 (56)
T ss_dssp TTSEECCCTTTCEE
T ss_pred ccceeecccceeeE
Confidence 69999999987753
No 28
>3oeq_A Frataxin homolog, mitochondrial; alpha/beta sandwich, metallochaperone, iron-storage, transpo protein; 2.96A {Saccharomyces cerevisiae} SCOP: d.82.2.1 PDB: 2fql_A 3oer_A 2ga5_A
Probab=47.30 E-value=10 Score=27.47 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=15.5
Q ss_pred CeeEEEEEEeCCEEEEcCCC
Q 031974 6 SGVYQYRFLVDGLWKYAPDL 25 (150)
Q Consensus 6 ~G~~~yKFiVDG~W~~d~~~ 25 (150)
.|-|+|.|. +|.|++.-+-
T Consensus 86 SGp~hfd~~-~~~Wi~~r~g 104 (123)
T 3oeq_A 86 SGPNRFDLL-NGEWVSLRNG 104 (123)
T ss_dssp TEEEEEEES-SSSEEETTTC
T ss_pred CCCeeEeec-CCeEEECCCC
Confidence 788999984 8999987653
No 29
>3bwu_D FIMD, outer membrane usher protein FIMD, N-terminal DOM; usher, N-terminal domain, ternary complex with chaperone and subunit, chaperone, structural protein, mebrane protein; 1.76A {Escherichia coli} SCOP: b.167.1.1 PDB: 1ze3_D 1zdx_A
Probab=46.80 E-value=17 Score=25.36 Aligned_cols=24 Identities=21% Similarity=0.438 Sum_probs=20.0
Q ss_pred cCCeeEEEEEEeCCEEEEcCCCCe
Q 031974 4 LPSGVYQYRFLVDGLWKYAPDLPS 27 (150)
Q Consensus 4 Lp~G~~~yKFiVDG~W~~d~~~p~ 27 (150)
++||+|.-.-+|+|+|+-.-+...
T Consensus 28 ~~PG~Y~vdI~vN~~~~~~~~i~f 51 (125)
T 3bwu_D 28 LPPGTYRVDIYLNNGYMATRDVTF 51 (125)
T ss_dssp SCSEEEEEEEEETTEEEEEEEEEE
T ss_pred cCCcEEEEEEEECCeEccceEEEE
Confidence 579999999999999997664444
No 30
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}
Probab=46.65 E-value=7.7 Score=36.27 Aligned_cols=18 Identities=44% Similarity=1.075 Sum_probs=16.3
Q ss_pred ccCCeeEEEEEEeCCEEE
Q 031974 3 VLPSGVYQYRFLVDGLWK 20 (150)
Q Consensus 3 ~Lp~G~~~yKFiVDG~W~ 20 (150)
.||+|.|+||+.++|.|.
T Consensus 204 ~l~~g~y~~kv~~~~~w~ 221 (921)
T 2wan_A 204 TLPAGTYQYKIALDHSWN 221 (921)
T ss_dssp EECSEEEEEEEEETTSSS
T ss_pred ccCCcceeEEEeecCccc
Confidence 589999999999998884
No 31
>1pn5_A Nacht-, LRR- and PYD-containing protein 2; alpha-helix bundle, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.5
Probab=41.46 E-value=5.8 Score=30.09 Aligned_cols=21 Identities=29% Similarity=0.620 Sum_probs=0.4
Q ss_pred eCCEEEEcCCCCeeeCCCCCc
Q 031974 15 VDGLWKYAPDLPSTQDDDGNV 35 (150)
Q Consensus 15 VDG~W~~d~~~p~~~d~~G~~ 35 (150)
|||+|.+|+.-.+.+=..|..
T Consensus 39 ~~~~~~~~~~~~~~~~t~~~M 59 (159)
T 1pn5_A 39 VDGEWTYDDATKTFTVTEGSM 59 (159)
T ss_dssp --------------------C
T ss_pred CCceeecccccCccccccccc
Confidence 799999999987644334433
No 32
>3t3l_A Frataxin, mitochondrial; Fe-S cluster biosynthesis, human mitochondria, oxidoreductas; 1.15A {Homo sapiens} SCOP: d.82.2.1 PDB: 3s4m_A 3t3k_A 3t3j_A 3s5f_A 3t3x_A 3t3t_A 3s5e_A 3s5d_A 1ekg_A 1ly7_A
Probab=40.24 E-value=14 Score=26.79 Aligned_cols=19 Identities=32% Similarity=0.576 Sum_probs=15.1
Q ss_pred CeeEEEEEEeCCEEEEcCCC
Q 031974 6 SGVYQYRFLVDGLWKYAPDL 25 (150)
Q Consensus 6 ~G~~~yKFiVDG~W~~d~~~ 25 (150)
.|-|+|.|. +|+|++.-+-
T Consensus 80 SGp~hfd~~-~~~Wi~~rdg 98 (129)
T 3t3l_A 80 SGPKRYDWT-GKNWVYSHDG 98 (129)
T ss_dssp SCCEEEEEC-SSSEEETTTC
T ss_pred CCCeeeEec-CCEEEECCCC
Confidence 588999984 7899987663
No 33
>2jox_A Churchill protein; zinc, transcription; NMR {Homo sapiens}
Probab=37.39 E-value=15 Score=25.99 Aligned_cols=13 Identities=15% Similarity=0.322 Sum_probs=10.5
Q ss_pred eEEEEEEeCCEEE
Q 031974 8 VYQYRFLVDGLWK 20 (150)
Q Consensus 8 ~~~yKFiVDG~W~ 20 (150)
.|+|+|-|+|.+.
T Consensus 69 ~HeYtF~V~~~yQ 81 (106)
T 2jox_A 69 RHEYTFSIMDEFQ 81 (106)
T ss_dssp EEEEEEEEETTEE
T ss_pred eeeEEEEEecCee
Confidence 6999999977553
No 34
>3ui3_A Immunoglobulin G-binding protein G, virulence-ASS protein D; ferrodoxin-like fold, virulence associated protein D, ribonu RNA binding protein; 2.80A {Streptococcus}
Probab=34.96 E-value=10 Score=28.72 Aligned_cols=19 Identities=32% Similarity=0.641 Sum_probs=13.8
Q ss_pred eCCEEEEcCCCCeeeCCCC
Q 031974 15 VDGLWKYAPDLPSTQDDDG 33 (150)
Q Consensus 15 VDG~W~~d~~~p~~~d~~G 33 (150)
|||+|.+|..-.+-+-..|
T Consensus 39 ~~~~~~~~~~~~~~~~~~~ 57 (160)
T 3ui3_A 39 VDGEWTYDDATKTFTVTEG 57 (160)
T ss_dssp -CEEEEEEGGGTEEEEEEC
T ss_pred CCceEeecccceeEEecCC
Confidence 8999999999886543344
No 35
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=34.40 E-value=25 Score=25.38 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=14.5
Q ss_pred EEEEEEeCCEEEEcCCCCe
Q 031974 9 YQYRFLVDGLWKYAPDLPS 27 (150)
Q Consensus 9 ~~yKFiVDG~W~~d~~~p~ 27 (150)
+.|||+ ||.|+.-=..++
T Consensus 66 ~tYrfc-DnVWtfilkd~~ 83 (121)
T 1nh2_D 66 DTYGFC-DDVWTFIVKNCQ 83 (121)
T ss_dssp EEEEEE-TTEEEEEEEEEE
T ss_pred cccccc-CcEEEEEEeceE
Confidence 689997 999997766665
No 36
>3n08_A Putative phosphatidylethanolamine-binding protein; eukarytic homolog RAF kinase inhibitor protein (RKIP). csgid structural genomics; 1.25A {Chlamydia trachomatis} SCOP: b.17.1.0
Probab=29.48 E-value=23 Score=26.10 Aligned_cols=11 Identities=27% Similarity=0.585 Sum_probs=9.2
Q ss_pred CCeeEEEEEEe
Q 031974 5 PSGVYQYRFLV 15 (150)
Q Consensus 5 p~G~~~yKFiV 15 (150)
|.|.|+|.|.|
T Consensus 104 P~g~HrY~F~v 114 (153)
T 3n08_A 104 PDAKHRYYFYA 114 (153)
T ss_dssp SSSCEEEEEEE
T ss_pred cCCCEEEEEEE
Confidence 56889999986
No 37
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F
Probab=29.03 E-value=53 Score=22.62 Aligned_cols=21 Identities=19% Similarity=0.058 Sum_probs=17.3
Q ss_pred CCcEEEEeeeeeeCceeeEEE
Q 031974 123 GPSVVALGSTHRFLAKYVTVV 143 (150)
Q Consensus 123 ~~~vl~l~~T~Ryk~KyvTtv 143 (150)
+++.+.+....|=++|.||+|
T Consensus 15 ~~~~v~I~~~~R~g~K~VT~V 35 (101)
T 2xzm_F 15 FQTHIHIRVEQRRGRKCFTTV 35 (101)
T ss_dssp CSCCEEEEEEEEETTEEEEEE
T ss_pred CCCeEEEEEEeccCCccEEEE
Confidence 356788888889778999998
No 38
>3a76_A Gamma-hexachlorocyclohexane dehydrochlorinase; barrel fold, lyase, detoxification; HET: SPD; 2.25A {Sphingomonas paucimobilis}
Probab=26.70 E-value=49 Score=23.73 Aligned_cols=21 Identities=24% Similarity=0.653 Sum_probs=15.8
Q ss_pred CeeEEEEEE-eCCEEEEcCCCC
Q 031974 6 SGVYQYRFL-VDGLWKYAPDLP 26 (150)
Q Consensus 6 ~G~~~yKFi-VDG~W~~d~~~p 26 (150)
.|.|...|. .||.|+.....-
T Consensus 130 ~gry~d~l~r~dg~WrI~~r~~ 151 (176)
T 3a76_A 130 AAVFTDEYERRDGVWKFSKRNA 151 (176)
T ss_dssp EEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEEEECCEEEEEEEEE
Confidence 478888886 799999876443
No 39
>2chc_A Protein RV3472; hypothetical protein; 1.69A {Mycobacterium tuberculosis} SCOP: d.17.4.25
Probab=24.28 E-value=59 Score=22.74 Aligned_cols=22 Identities=41% Similarity=0.649 Sum_probs=16.4
Q ss_pred CeeEEEEEE-eCCEEEEcCCCCe
Q 031974 6 SGVYQYRFL-VDGLWKYAPDLPS 27 (150)
Q Consensus 6 ~G~~~yKFi-VDG~W~~d~~~p~ 27 (150)
.|.|...|. .||.|+.....-.
T Consensus 108 ~g~y~d~~~r~dg~Wri~~r~~~ 130 (170)
T 2chc_A 108 SGEYQDRLIKQDGQWRIAYRRLR 130 (170)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEEEEECCEEEEEEEEEE
Confidence 467777777 6999998875544
No 40
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=23.88 E-value=17 Score=27.21 Aligned_cols=13 Identities=38% Similarity=0.828 Sum_probs=0.0
Q ss_pred eCCEEEEcCCCCe
Q 031974 15 VDGLWKYAPDLPS 27 (150)
Q Consensus 15 VDG~W~~d~~~p~ 27 (150)
|||+|.+|+...+
T Consensus 39 v~~~w~~~~a~~t 51 (145)
T 1ibx_B 39 VDGEWTYDDATKT 51 (145)
T ss_dssp -------------
T ss_pred CCceEecccccCc
Confidence 8999999998875
No 41
>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4
Probab=23.85 E-value=31 Score=26.31 Aligned_cols=18 Identities=17% Similarity=0.527 Sum_probs=13.9
Q ss_pred CeeEEEEEEeCCEEEEcCC
Q 031974 6 SGVYQYRFLVDGLWKYAPD 24 (150)
Q Consensus 6 ~G~~~yKFiVDG~W~~d~~ 24 (150)
...++||| ++|+|..+..
T Consensus 57 ~D~~ryk~-~~~~W~~~gk 74 (184)
T 1xbr_A 57 ADNHRWKY-VNGEWVPGGK 74 (184)
T ss_dssp SSSCEEEE-ETTEEEEESS
T ss_pred ccCceEEE-ECCcEEEcCc
Confidence 34689999 7999987643
No 42
>4b0m_A F1 capsule-anchoring protein; protein transport, chaperone-usher pathway, PILI assembly; 1.80A {Yersinia pestis} PDB: 4b0e_A
Probab=23.71 E-value=63 Score=23.00 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=19.4
Q ss_pred CCeeEEEEEEeCCEEEEcCCCCe
Q 031974 5 PSGVYQYRFLVDGLWKYAPDLPS 27 (150)
Q Consensus 5 p~G~~~yKFiVDG~W~~d~~~p~ 27 (150)
.||+|.-.-+|+|+|.-..+...
T Consensus 28 ~PG~Y~vdI~vN~~~~~~~~i~F 50 (136)
T 4b0m_A 28 LPGNYFVNVFVNGRKVDSGNIDF 50 (136)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEE
T ss_pred CCcEEEEEEEECCccccceEEEE
Confidence 37999999999999997766554
No 43
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=23.02 E-value=53 Score=23.08 Aligned_cols=22 Identities=23% Similarity=0.646 Sum_probs=16.0
Q ss_pred eEEEEEEeCCEEEEcCCCCeeeC
Q 031974 8 VYQYRFLVDGLWKYAPDLPSTQD 30 (150)
Q Consensus 8 ~~~yKFiVDG~W~~d~~~p~~~d 30 (150)
-+.||| +||.|..-=..++...
T Consensus 61 L~tYrf-cDnVWTf~lkd~~fk~ 82 (108)
T 1nvp_D 61 LNTYRF-CDNVWTFVLNDVEFRE 82 (108)
T ss_dssp EEEEEE-ETTEEEEEEEEEEEEC
T ss_pred cCCccc-cCcEEEEEEeceEEEe
Confidence 378997 5999998766665543
No 44
>1pfs_A PF3 SSDBP, PF3 single-stranded DNA binding protein; viral, bacteriophage PF3; NMR {Pseudomonas phage PF3} SCOP: b.40.4.7
Probab=22.63 E-value=97 Score=20.57 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=17.0
Q ss_pred ccCCeeEEEEEEeC---C--EEEEcCCC
Q 031974 3 VLPSGVYQYRFLVD---G--LWKYAPDL 25 (150)
Q Consensus 3 ~Lp~G~~~yKFiVD---G--~W~~d~~~ 25 (150)
.+|+|+|+--++.| | +..+|+.+
T Consensus 47 v~paG~Ye~d~~~~V~dgRlef~~Dprq 74 (78)
T 1pfs_A 47 VIPAGSYQVPYRINVNNGRPELAFDFKA 74 (78)
T ss_dssp CCCSEEEEEEEEEEEETTEEEEEECTTS
T ss_pred CCCCCceecceEeeecCCcEEEEeChHH
Confidence 47899999999865 5 55666654
No 45
>1yb3_A Hypothetical protein; structural genomics, protein structure initiative, PSI; 1.60A {Pyrococcus furiosus} SCOP: d.296.1.2
Probab=21.43 E-value=40 Score=25.76 Aligned_cols=10 Identities=30% Similarity=0.697 Sum_probs=8.1
Q ss_pred eCCEEEEcCC
Q 031974 15 VDGLWKYAPD 24 (150)
Q Consensus 15 VDG~W~~d~~ 24 (150)
+||+|+-..-
T Consensus 54 ~dGeW~~m~Y 63 (175)
T 1yb3_A 54 IDGKWEEMKY 63 (175)
T ss_dssp ETTEEEECCS
T ss_pred EcCEEeEccC
Confidence 9999997643
Done!