BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031977
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZDI|C Chain C, Crystal Structure Of Prefoldin From Pyrococcus Horikoshii
Ot3
Length = 151
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 27 EVNLLQDSLNNIRTATSRLESASTALHDLS-LRPQGAKMLVPLTASLYVPGTLDDARKVL 85
+ +L +L + A + +++ L +L + + ++LVP+ A ++ G + D +
Sbjct: 24 QAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAI 83
Query: 86 VDIGTGYFVEKTMDEGKDYCERKI 109
V +G+GY VE+++DE + E+++
Sbjct: 84 VSVGSGYAVERSIDEAISFLEKRL 107
>pdb|1FXK|C Chain C, Crystal Structure Of Archaeal Prefoldin (gimc)
Length = 133
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 27 EVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLV 86
+V L+Q + +R S LE L D+ + G++ LVP+ A ++ L D +V++
Sbjct: 16 QVELIQQQMEAVRATISELEILEKTLSDIQGKD-GSETLVPVGAGSFIKAELKDTSEVIM 74
Query: 87 DIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIE 121
+G G ++K ++ + + + N L+S ++ E
Sbjct: 75 SVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGE 109
>pdb|2XE1|A Chain A, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance
Length = 354
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 44 RLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVL--VDIGTGYFVEKTMDEG 101
E+ + D LRP A + V G D +L VD+G Y+ K M
Sbjct: 262 NFEAVAQYQFDFGLRPSVAYLQSKGKNLGVVAGRNYDDEDILKYVDVGATYYFNKNMST- 320
Query: 102 KDYCERKINLLKSN 115
Y + KINLL N
Sbjct: 321 --YVDYKINLLDDN 332
>pdb|4EO3|A Chain A, Peroxiredoxin Nitroreductase Fusion Enzyme
pdb|4EO3|B Chain B, Peroxiredoxin Nitroreductase Fusion Enzyme
Length = 322
Score = 30.0 bits (66), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 8 GMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTA 51
G+ + SVE LK KE+ DL+V LL D + + LE+ T
Sbjct: 59 GISRDSVEALKRFKEKNDLKVTLLSDPEGILHEFFNVLENGKTV 102
>pdb|2XG6|A Chain A, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance
pdb|2XG6|B Chain B, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance
pdb|2XG6|C Chain C, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance
pdb|2XG6|D Chain D, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance
pdb|2XG6|E Chain E, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance
pdb|2XG6|F Chain F, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance
Length = 343
Score = 29.6 bits (65), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 44 RLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVL--VDIGTGYFVEKTMDEG 101
E+ + D LRP L L + G D +L VD+G Y+ K M
Sbjct: 255 NFEAVAQYQFDFGLRP----FLAYLQSKGKNLGRGYDDEDILKYVDVGATYYFNKNM--- 307
Query: 102 KDYCERKINLLKSN 115
Y + KINLL N
Sbjct: 308 STYVDYKINLLDDN 321
>pdb|2XE3|A Chain A, Ompc28
pdb|2XE3|B Chain B, Ompc28
Length = 343
Score = 29.3 bits (64), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 45 LESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVL--VDIGTGYFVEKTMDEGK 102
E+ + D LRP L L + G D +L VD+G Y+ K M
Sbjct: 256 FEAVAQYQFDFGLRP----FLAYLQSKGKNLGRGYDDEDILKYVDVGATYYFNKNM---S 308
Query: 103 DYCERKINLLKSN 115
Y + KINLL N
Sbjct: 309 TYVDYKINLLDDN 321
>pdb|2J1N|A Chain A, Osmoporin Ompc
pdb|2J1N|B Chain B, Osmoporin Ompc
pdb|2J1N|C Chain C, Osmoporin Ompc
pdb|2J4U|P Chain P, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|Q Chain Q, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|R Chain R, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|U Chain U, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|V Chain V, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|W Chain W, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2ZLE|D Chain D, Cryo-Em Structure Of Degp12OMP
pdb|3NB3|D Chain D, The Host Outer Membrane Proteins Ompa And Ompc Are Packed
At Specific Sites In The Shigella Phage Sf6 Virion As
Structural Components
pdb|4A8D|M Chain M, Degp Dodecamer With Bound Omp
Length = 346
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 44 RLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVL--VDIGTGYFVEKTMDEG 101
E+ + D LRP L L + G D +L VD+G Y+ K M
Sbjct: 258 NFEAVAQYQFDFGLRPS----LAYLQSKGKNLGRGYDDEDILKYVDVGATYYFNKNMST- 312
Query: 102 KDYCERKINLLKSN 115
Y + KINLL N
Sbjct: 313 --YVDYKINLLDDN 324
>pdb|3DLI|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|C Chain C, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
Length = 240
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 14/69 (20%)
Query: 60 QGAKMLVPLTASLYVPGTLDDARKVL-VDIGTGYFVEKTMDEGKD------------YCE 106
+G++ LV Y+P R+VL + G G F+E +EG + +CE
Sbjct: 22 RGSRELVKARLRRYIP-YFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCE 80
Query: 107 RKINLLKSN 115
K N++KS+
Sbjct: 81 GKFNVVKSD 89
>pdb|2XE5|A Chain A, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance (Ompc26)
pdb|2XE5|B Chain B, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance (Ompc26)
pdb|2XE5|C Chain C, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance (Ompc26)
pdb|2XE5|D Chain D, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance (Ompc26)
pdb|2XE5|E Chain E, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance (Ompc26)
pdb|2XE5|F Chain F, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance (Ompc26)
Length = 343
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 45 LESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVL--VDIGTGYFVEKTMDEGK 102
E+ + D LRP L L + G D +L VD+G Y+ K M
Sbjct: 256 FEAVAQYQFDFGLRPS----LAYLQSKGKNLGRGYDDEDILKYVDVGATYYFNKNM---S 308
Query: 103 DYCERKINLLKSN 115
Y + KINLL N
Sbjct: 309 TYVDYKINLLDDN 321
>pdb|2XE2|A Chain A, Molecular Insights Into Clinically Isolated Ompc20 Mutants
And Their Role In Multi-Drug Resistance
pdb|2XE2|B Chain B, Molecular Insights Into Clinically Isolated Ompc20 Mutants
And Their Role In Multi-Drug Resistance
pdb|2XE2|C Chain C, Molecular Insights Into Clinically Isolated Ompc20 Mutants
And Their Role In Multi-Drug Resistance
Length = 343
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 45 LESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVL--VDIGTGYFVEKTMDEGK 102
E+ + D LRP L L + G D +L VD+G Y+ K M
Sbjct: 256 FEAVAQYQFDFGLRPS----LAYLQSKGKNLGRGYDDEDILKYVDVGATYYFNKNMST-- 309
Query: 103 DYCERKINLLKSN 115
Y + KINLL N
Sbjct: 310 -YVDYKINLLDDN 321
>pdb|1PHO|A Chain A, Crystal Structures Explain Functional Properties Of Two E.
Coli Porins
Length = 330
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 42 TSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEG 101
T E+ + D LRP + L+ + G D+ +D+G Y+ K M
Sbjct: 244 TQNFEAVAQYQFDFGLRP---SLGYVLSKGKDIEGIGDEDLVNYIDVGATYYFNKNMSAF 300
Query: 102 KDYCERKINLLKSN 115
DY KIN L S+
Sbjct: 301 VDY---KINQLDSD 311
>pdb|1OSM|A Chain A, Osmoporin (Ompk36) From Klebsiella Pneumoniae
pdb|1OSM|B Chain B, Osmoporin (Ompk36) From Klebsiella Pneumoniae
pdb|1OSM|C Chain C, Osmoporin (Ompk36) From Klebsiella Pneumoniae
Length = 342
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 44 RLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKD 103
E A+ D LRP L L G D + VD+G Y+ K M
Sbjct: 255 NFEVAAQYQFDFGLRPS-VAYLQSKGKDLNGYGDQDILK--YVDVGATYYFNKNMST--- 308
Query: 104 YCERKINLLKSN 115
Y + KINLL N
Sbjct: 309 YVDYKINLLDDN 320
>pdb|3UU2|A Chain A, Salmonella Typhi Osmoporin(Ompc):an Outer Membrane Protein
pdb|3UU2|B Chain B, Salmonella Typhi Osmoporin(Ompc):an Outer Membrane Protein
pdb|3UU2|C Chain C, Salmonella Typhi Osmoporin(Ompc):an Outer Membrane Protein
Length = 357
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 85 LVDIGTGYFVEKTMDEGKDYCERKINLLKSN 115
VD+G Y+ K M Y + KINLL N
Sbjct: 308 YVDVGATYYFNKNMST---YVDYKINLLDKN 335
>pdb|3UPG|A Chain A, Loop Deletion Mutant Of Salmonella Typhi Osmoporin
(Ompc):an Outer Membrane Protein
Length = 338
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 85 LVDIGTGYFVEKTMDEGKDYCERKINLLKSN 115
VD+G Y+ K M Y + KINLL N
Sbjct: 289 YVDVGATYYFNKNMST---YVDYKINLLDKN 316
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 26.6 bits (57), Expect = 5.8, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 8/37 (21%)
Query: 89 GTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATK 125
GTG+ VE+ DEGK + K+ FD+ +E TK
Sbjct: 121 GTGFSVEQNKDEGK--------IDKNKFDEDLEDVTK 149
>pdb|1GKP|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|E Chain E, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|F Chain F, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKQ|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
Length = 458
Score = 26.6 bits (57), Expect = 6.2, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 75 PGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIE 121
P DDA + GY + K+ EG YC+ ++ S FD+ E
Sbjct: 95 PSRNDDALE-------GYQLWKSKAEGNSYCDYTFHMAVSKFDEKTE 134
>pdb|3F65|A Chain A, The F4 Fimbrial Chaperone Faee Does Not Self-Cap Its
Interactive Surfaces
pdb|3F65|B Chain B, The F4 Fimbrial Chaperone Faee Does Not Self-Cap Its
Interactive Surfaces
pdb|3F65|C Chain C, The F4 Fimbrial Chaperone Faee Does Not Self-Cap Its
Interactive Surfaces
pdb|3F65|D Chain D, The F4 Fimbrial Chaperone Faee Does Not Self-Cap Its
Interactive Surfaces
pdb|3F65|E Chain E, The F4 Fimbrial Chaperone Faee Does Not Self-Cap Its
Interactive Surfaces
pdb|3F65|F Chain F, The F4 Fimbrial Chaperone Faee Does Not Self-Cap Its
Interactive Surfaces
pdb|3F65|G Chain G, The F4 Fimbrial Chaperone Faee Does Not Self-Cap Its
Interactive Surfaces
pdb|3F65|H Chain H, The F4 Fimbrial Chaperone Faee Does Not Self-Cap Its
Interactive Surfaces
pdb|3F6L|A Chain A, Structure Of The F4 Fimbrial Chaperone Faee
pdb|3F6L|B Chain B, Structure Of The F4 Fimbrial Chaperone Faee
Length = 224
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 45 LESASTALHDLSL--RPQGAKMLVPLTASLYVPGTLDD--ARKVLVDIGT 90
LE A +SL RP G MLV T ++ G+L D +K+ D GT
Sbjct: 117 LEGRKGAEEGISLQSRPDGRTMLVNTTPYIFAIGSLLDGNGKKIATDNGT 166
>pdb|3GEW|B Chain B, Faee-Faeg Chaperone-Major Pilin Complex Of F4 Ad Fimbriae
pdb|3GEW|C Chain C, Faee-Faeg Chaperone-Major Pilin Complex Of F4 Ad Fimbriae
pdb|3GFU|C Chain C, Faee-Faeg Chaperone-Major Pilin Complex Of F4 Ac 595
Fimbriae
pdb|3GFU|A Chain A, Faee-Faeg Chaperone-Major Pilin Complex Of F4 Ac 595
Fimbriae
Length = 224
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 45 LESASTALHDLSL--RPQGAKMLVPLTASLYVPGTLDD--ARKVLVDIGT 90
LE A +SL RP G MLV T ++ G+L D +K+ D GT
Sbjct: 117 LEGRKGAEEGISLQSRPDGRTMLVNTTPYIFAIGSLLDGNGKKIATDNGT 166
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 43 SRLESASTALHDLSLRPQGAKMLVPLTASL 72
S L A T LH+L L +GAKM V L L
Sbjct: 112 SVLFYAITTLHNLLLHQEGAKMAVRLAGGL 141
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 43 SRLESASTALHDLSLRPQGAKMLVPLTASL 72
S L A T LH+L L +GAKM V L L
Sbjct: 112 SVLFYAITTLHNLLLHQEGAKMAVRLAGGL 141
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 28 VNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASL 72
VN+L ++++ L A T LH+L L +GAKM V L L
Sbjct: 240 VNMLGSPVDSV------LFHAITTLHNLLLHQEGAKMAVRLAGGL 278
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 43 SRLESASTALHDLSLRPQGAKMLVPLTASL 72
S L A T LH+L L +GAKM V L L
Sbjct: 116 SVLFYAITTLHNLLLHQEGAKMAVRLAGGL 145
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 43 SRLESASTALHDLSLRPQGAKMLVPLTASL 72
S L A T LH+L L +GAKM V L L
Sbjct: 118 SVLFYAITTLHNLLLHQEGAKMAVRLAGGL 147
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 43 SRLESASTALHDLSLRPQGAKMLVPLTASL 72
S L A T LH+L L +GAKM V L L
Sbjct: 118 SVLFYAITTLHNLLLHQEGAKMAVRLAGGL 147
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 25.8 bits (55), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 43 SRLESASTALHDLSLRPQGAKMLVPLTASL 72
S L A T LH+L L +GAKM V L L
Sbjct: 117 SVLFYAITTLHNLLLHQEGAKMAVRLAGGL 146
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 43 SRLESASTALHDLSLRPQGAKMLVPLTASL 72
S L A T LH+L L +GAKM V L L
Sbjct: 120 SVLFYAITTLHNLLLHQEGAKMAVRLAGGL 149
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 43 SRLESASTALHDLSLRPQGAKMLVPLTASL 72
S L A T LH+L L +GAKM V L L
Sbjct: 101 SVLFYAITTLHNLLLHQEGAKMAVRLAGGL 130
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 43 SRLESASTALHDLSLRPQGAKMLVPLTASL 72
S L A T LH+L L +GAKM V L L
Sbjct: 119 SVLFYAITTLHNLLLHQEGAKMAVRLAGGL 148
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 43 SRLESASTALHDLSLRPQGAKMLVPLTASL 72
S L A T LH+L L +GAKM V L L
Sbjct: 105 SVLFYAITTLHNLLLHQEGAKMAVRLAGGL 134
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 25.8 bits (55), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 43 SRLESASTALHDLSLRPQGAKMLVPLTASL 72
S L A T LH+L L +GAKM V L L
Sbjct: 101 SVLFYAITTLHNLLLHQEGAKMAVRLAGGL 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.127 0.330
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,670,035
Number of Sequences: 62578
Number of extensions: 127242
Number of successful extensions: 333
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 307
Number of HSP's gapped (non-prelim): 44
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)