BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031977
(150 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P57742|PFD5_ARATH Probable prefoldin subunit 5 OS=Arabidopsis thaliana GN=At5g23290
PE=1 SV=1
Length = 151
Score = 237 bits (605), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 115/149 (77%), Positives = 135/149 (90%)
Query: 2 ASSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQG 61
+SS G MEKM ++QLKA+KEQ DLEVNLLQDSLNNIRTAT RL++A+ AL+DLSLRPQG
Sbjct: 3 SSSSRGEMEKMGIDQLKALKEQADLEVNLLQDSLNNIRTATVRLDAAAAALNDLSLRPQG 62
Query: 62 AKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIE 121
KMLVPLTASLYVPGTLD+A KVLVDIGTGYF+EKTMD+GKDYC+RKINLLKSNFDQL E
Sbjct: 63 KKMLVPLTASLYVPGTLDEADKVLVDIGTGYFIEKTMDDGKDYCQRKINLLKSNFDQLFE 122
Query: 122 VATKKKTISDEAAVILQAKLKQLAPASSS 150
VA KKK+++DEA ++LQAK+KQL A++S
Sbjct: 123 VAAKKKSVADEAGMVLQAKVKQLTAATTS 151
>sp|Q5RAY0|PFD5_PONAB Prefoldin subunit 5 OS=Pongo abelii GN=PFDN5 PE=2 SV=1
Length = 154
Score = 95.9 bits (237), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 81/134 (60%)
Query: 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70
++++ QL+ +K Q D EV L S+ ++ ++ A L+ L+ +G ++LVPLT+
Sbjct: 9 ELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTS 68
Query: 71 SLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTIS 130
S+YVPG L D VL+D+GTGY+VEKT ++ KD+ +RKI+ L +++ +K +
Sbjct: 69 SMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMK 128
Query: 131 DEAAVILQAKLKQL 144
++ K++QL
Sbjct: 129 QAVMEMMSQKIRQL 142
>sp|Q99471|PFD5_HUMAN Prefoldin subunit 5 OS=Homo sapiens GN=PFDN5 PE=1 SV=2
Length = 154
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 81/134 (60%)
Query: 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70
++++ QL+ +K Q D EV L S+ ++ ++ A L+ L+ +G ++LVPLT+
Sbjct: 9 ELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTS 68
Query: 71 SLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTIS 130
S+YVPG L D VL+D+GTGY+VEKT ++ KD+ +RKI+ L +++ +K +
Sbjct: 69 SMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMK 128
Query: 131 DEAAVILQAKLKQL 144
++ K++QL
Sbjct: 129 QAVMEMMSQKIQQL 142
>sp|Q9WU28|PFD5_MOUSE Prefoldin subunit 5 OS=Mus musculus GN=Pfdn5 PE=1 SV=1
Length = 154
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 81/134 (60%)
Query: 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70
++++ QL+ +K Q D EV L S+ ++ ++ A L+ L+ +G ++LVPLT+
Sbjct: 9 ELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTS 68
Query: 71 SLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTIS 130
S+YVPG L D VL+D+GTGY+VEKT ++ KD+ +RKI+ L +++ +K +
Sbjct: 69 SMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMK 128
Query: 131 DEAAVILQAKLKQL 144
++ K++QL
Sbjct: 129 QAVMEMMSQKIQQL 142
>sp|Q8HYI9|PFD5_BOVIN Prefoldin subunit 5 OS=Bos taurus GN=PFDN5 PE=2 SV=1
Length = 154
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 80/134 (59%)
Query: 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70
++++ QL+ +K Q D EV L S+ ++ ++ A L+ L +G ++LVPLT+
Sbjct: 9 ELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLKKNNEGKELLVPLTS 68
Query: 71 SLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTIS 130
S+YVPG L D VL+D+GTGY+VEKT ++ KD+ +RKI+ L +++ +K +
Sbjct: 69 SMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMK 128
Query: 131 DEAAVILQAKLKQL 144
++ K++QL
Sbjct: 129 QAVMEMMSQKIQQL 142
>sp|Q54V55|PFD5_DICDI Probable prefoldin subunit 5 OS=Dictyostelium discoideum GN=pfdn5
PE=3 SV=1
Length = 160
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 78/129 (60%), Gaps = 15/129 (11%)
Query: 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTAS 71
+S+EQL+ ++EQ + E+ L +S+ ++ A+++ A A+ L G MLVPLT+S
Sbjct: 14 LSLEQLQMVREQVEAEIQQLSESIQQLKHASNKYIEAKEAMGGLK-GTDGKDMLVPLTSS 72
Query: 72 LYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERK--------------INLLKSNFD 117
+Y+PG ++ KVLVDIGTGY+VE +++G+++ RK IN+ + N +
Sbjct: 73 IYLPGKINSNEKVLVDIGTGYYVEMGIEQGQNFSNRKVQLITEQVNKVQTAINMKRQNLE 132
Query: 118 QLIEVATKK 126
+++VA K
Sbjct: 133 SIVQVAQSK 141
>sp|Q9VCZ8|PFD5_DROME Probable prefoldin subunit 5 OS=Drosophila melanogaster GN=CG7048
PE=2 SV=1
Length = 168
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 82/137 (59%), Gaps = 2/137 (1%)
Query: 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70
K+S EQL IK++ + E+ +QDSL+ + ++ + AL + ++LVPLT+
Sbjct: 18 KLSPEQLIQIKQEFEQEITNVQDSLSTLHGCQAKYAGSKEALGTFQPNWENRQILVPLTS 77
Query: 71 SLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTIS 130
S+YVPG + D + ++DIGTGY++EK ++ KDY +R++ ++ +++ ++ +K
Sbjct: 78 SMYVPGRVKDLNRFVIDIGTGYYIEKDLEGSKDYFKRRVEYVQEQIEKIEKIHLQKTRFY 137
Query: 131 DEAAVILQAKLKQLAPA 147
+ +L+ +KQ A A
Sbjct: 138 NSVMSVLE--MKQAAAA 152
>sp|Q04493|PFD5_YEAST Prefoldin subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=GIM5 PE=1 SV=1
Length = 163
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 86/147 (58%), Gaps = 11/147 (7%)
Query: 3 SSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQ-- 60
SS+ + K++ EQL A+K+Q D E+ SL + A + + + D+ Q
Sbjct: 2 SSQKIDLTKLNPEQLNAVKQQFDQELQHFTQSLQALTMAKGKF---TECIDDIKTVSQAG 58
Query: 61 --GAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQ 118
G K+LVP +ASLY+PG + D +K +VDIGTGY+VEK+ + + ++K++ L Q
Sbjct: 59 NEGQKLLVPASASLYIPGKIVDNKKFMVDIGTGYYVEKSAEAAIAFYQKKVDKLNKESVQ 118
Query: 119 LIEVATKKKTISDEAAVILQAKLKQLA 145
+ ++ K+KT + ++ ++A+++Q A
Sbjct: 119 IQDI-IKEKT---QYSLSIEAQIRQAA 141
>sp|Q21993|PFD5_CAEEL Probable prefoldin subunit 5 OS=Caenorhabditis elegans GN=pfd-5
PE=2 SV=1
Length = 152
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 63/104 (60%)
Query: 5 KGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKM 64
KG + ++S++QL +++ + E+N Q+S N ++ +R E + +AL D+ + G
Sbjct: 6 KGVPLSELSLQQLGELQKNCEQELNFFQESFNALKGLLTRNEKSISALDDVKIATAGHTA 65
Query: 65 LVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERK 108
L+PL+ SLY+ L D K LV+IGTGYFVE ++ K +RK
Sbjct: 66 LIPLSESLYIRAELSDPSKHLVEIGTGYFVELDREKAKAIFDRK 109
>sp|O94307|PFD5_SCHPO Probable prefoldin subunit 5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=bob1 PE=1 SV=1
Length = 154
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 67/111 (60%), Gaps = 4/111 (3%)
Query: 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQ--GAKMLVPLT 69
+S+EQL + +Q D E+ L S + A + ++D ++R + G ++LVPLT
Sbjct: 13 LSLEQLSEVIKQLDSELEYLSTSYGQLGRAQLKFRECLANVND-AVRAENDGKEVLVPLT 71
Query: 70 ASLYVPGTLD-DARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQL 119
+SLYVPG L+ K+LVDIGTGY+VEK+ E +Y +RK L S+ + L
Sbjct: 72 SSLYVPGKLNLGNSKLLVDIGTGYYVEKSAGEATEYYKRKCEYLASSIENL 122
>sp|A8XPL7|PFD5_CAEBR Probable prefoldin subunit 5 OS=Caenorhabditis briggsae GN=pfd-5
PE=3 SV=2
Length = 154
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 77/141 (54%), Gaps = 4/141 (2%)
Query: 5 KGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKM 64
+G + ++S++QL +++ + E+ QDS N ++ SR E + +AL D+ + G
Sbjct: 6 RGVPLSELSLQQLGELQKNCEQELTFFQDSFNALKALLSRNEKSISALEDVKVGTAGHTA 65
Query: 65 LVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVAT 124
L+PL+ SLY+ L D K +V+IGTGYFVE ++ K +RK + + + +
Sbjct: 66 LIPLSESLYIRAELSDPNKHMVEIGTGYFVELDREKAKGIFDRKKEHIAKQVETVEGILK 125
Query: 125 KKKT----ISDEAAVILQAKL 141
+K+ ISD +QA+L
Sbjct: 126 EKRRTRAYISDAFQTKVQAQL 146
>sp|A1RXA9|PFDA_THEPD Prefoldin subunit alpha OS=Thermofilum pendens (strain Hrk 5)
GN=pfdA PE=3 SV=1
Length = 129
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 13/121 (10%)
Query: 1 MASSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQ 60
MA S+ E+ SV L + E+ E+ L Q T + ++SA AL ++S
Sbjct: 1 MAQSRERLAEEYSV--LAQVAEELQREIQLAQ-------TLIAEVDSAILALKNISSLED 51
Query: 61 GAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLI 120
G ++LVP++A +YV ++ K LV IG+ VEK++DE ++ ++ K QL+
Sbjct: 52 GKEILVPVSAGVYVRASIKRQEKFLVAIGSNILVEKSLDEAVEFLNKR----KEELSQLV 107
Query: 121 E 121
E
Sbjct: 108 E 108
>sp|Q3IUJ7|PFDA_NATPD Prefoldin subunit alpha OS=Natronomonas pharaonis (strain DSM 2160
/ ATCC 35678) GN=pfdA PE=3 SV=1
Length = 151
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 31 LQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGT 90
+Q + N+R S ++ A A+ L GA + VPL YV T++D +V+V +G
Sbjct: 29 IQAEIENVRDEQSEIDEAIEAIETLET---GATVQVPLGGDAYVRATIEDMDEVVVTLGG 85
Query: 91 GYFVEKTMDEGKDYCERKINLLKSNFDQL 119
GY E+ + + ERK L ++L
Sbjct: 86 GYAAERDSEGAVESLERKKETLDDRIEEL 114
>sp|Q5JIE3|PFDA1_PYRKO Prefoldin subunit alpha 1 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=pfdA1 PE=3 SV=1
Length = 146
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 33/47 (70%)
Query: 63 KMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKI 109
++LVP+ A ++ G + DA+ +V +G GY V+K++D+ +Y E++I
Sbjct: 57 EILVPIGAGSFLKGKIVDAKNAIVSVGAGYAVQKSLDDSIEYLEKRI 103
>sp|Q8TUY7|PFDA_METKA Prefoldin subunit alpha OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=pfdA PE=3 SV=1
Length = 157
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 27 EVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAK-------MLVPLTASLYVPGTLD 79
E+N LQ + I +ES+ + L+ + +G K +LVP+ A +V +
Sbjct: 20 EINRLQGQMEAINAQIDLIESSISELNRVEETLKGVKELEGDEEVLVPVGAQSFVRACVT 79
Query: 80 DARKVLVDIGTGYFVEKTMDE 100
D +V+V IG G VE+T+DE
Sbjct: 80 DTERVIVGIGAGVAVERTIDE 100
>sp|O58263|PFDA_PYRHO Prefoldin subunit alpha OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=pfdA PE=1 SV=2
Length = 148
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 27 EVNLLQDSLNNIRTATSRLESASTALHDLS-LRPQGAKMLVPLTASLYVPGTLDDARKVL 85
+ +L +L + A + +++ L +L + + ++LVP+ A ++ G + D +
Sbjct: 21 QAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAI 80
Query: 86 VDIGTGYFVEKTMDEGKDYCERKI 109
V +G+GY VE+++DE + E+++
Sbjct: 81 VSVGSGYAVERSIDEAISFLEKRL 104
>sp|Q8U3T0|PFDA_PYRFU Prefoldin subunit alpha OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=pfdA PE=3 SV=1
Length = 146
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 27 EVNLLQDSLNNIRTATSRLESASTALHDL-SLRPQGAKMLVPLTASLYVPGTLDDARKVL 85
+ LL +L + A + +++ L +L + + ++LVP+ A ++ G + D +
Sbjct: 20 QAQLLAQNLELLSLAQAEVQTVKETLENLMKIEDENPEILVPIGAGSFLKGKIVDKNNAI 79
Query: 86 VDIGTGYFVEKTMDEGKDYCERKI 109
+ +G+GY VEKT+++ Y + +I
Sbjct: 80 ISVGSGYAVEKTLEDAIKYLDERI 103
>sp|O27646|PFDA_METTH Prefoldin subunit alpha OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=pfdA PE=1 SV=1
Length = 141
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 27 EVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLV 86
+V L+Q + +R S LE L D+ + G++ LVP+ A ++ L D +V++
Sbjct: 20 QVELIQQQMEAVRATISELEILEKTLSDIQGKD-GSETLVPVGAGSFIKAELKDTSEVIM 78
Query: 87 DIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIE 121
+G G ++K ++ + + + N L+S ++ E
Sbjct: 79 SVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGE 113
>sp|Q9UYI4|PFDA_PYRAB Prefoldin subunit alpha OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=pfdA PE=3 SV=1
Length = 148
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 41 ATSRLESASTALHDLS-LRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMD 99
A + +++ L +L + + ++LVP+ A ++ G + D +V +G+GY VE+++D
Sbjct: 35 ARAEVQTVKETLENLKKIEEEKPEILVPIGAGSFLKGIIVDKNNAIVSVGSGYAVERSVD 94
Query: 100 EGKDYCERKIN 110
+ + E+++N
Sbjct: 95 DAISFLEKRLN 105
>sp|A7T0W1|UXT_NEMVE Protein UXT homolog OS=Nematostella vectensis GN=v1g140887 PE=3
SV=1
Length = 159
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 51/96 (53%)
Query: 32 QDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTG 91
QD + T ++L+S+ + L+ + + V L + + ++ D ++ + +G G
Sbjct: 37 QDEIVAKITEYTQLKSSIEQIQKTDLKGKDLRSRVDLGCNFFCQASVPDPSRIFIAVGYG 96
Query: 92 YFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKK 127
+FVE T+ E ++ E+K+ L+ + D+L + A K K
Sbjct: 97 FFVEFTLSEALNFIEKKLAHLQHSVDKLGKDAAKIK 132
>sp|Q46F99|PFDA_METBF Prefoldin subunit alpha OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=pfdA PE=3 SV=1
Length = 144
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 31 LQDSLNNIRTATSRLESASTALHDL---SLRPQGAKMLVPLTASLYVPGTLDDARKVLVD 87
L+ +N ++ + + + A+ +++L S + A+ +VP+ +V + +A KV+VD
Sbjct: 26 LKQQMNMVQASITSCDQATVTINELKTVSAEGKTAETMVPVGFGSFVYAEIKNADKVIVD 85
Query: 88 IGTGYFVEKTMDEGKDYCERKINLLKSNFDQL 119
+G G+ E+T DE + +R+ L +Q+
Sbjct: 86 LGAGFSAEETADEAVETLKRRKEQLTKILEQM 117
>sp|Q5JE63|PFDA2_PYRKO Prefoldin subunit alpha 2 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=pfdA2 PE=3 SV=1
Length = 142
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 45/86 (52%)
Query: 27 EVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLV 86
E+ L+ + I + L + L L + +G ++ +PL + + + G +++ V++
Sbjct: 23 EIEYLRSQVGVIDATITDLRTVDATLAYLKEKGKGKEIYIPLGSGVAIRGKIENPDDVIM 82
Query: 87 DIGTGYFVEKTMDEGKDYCERKINLL 112
D+G G V T+DE ++ E++I L
Sbjct: 83 DVGAGILVGATVDEARENIEKRIKAL 108
>sp|A5UL29|PFDA_METS3 Prefoldin subunit alpha OS=Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861) GN=pfdA PE=3 SV=1
Length = 146
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 56/105 (53%), Gaps = 5/105 (4%)
Query: 16 QLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVP 75
++ K+Q DL +Q + +R + + +++ + L DL + + VP+ A ++
Sbjct: 13 EINVYKQQGDL----IQQQIELVRASIAEVDALTNTLDDLEGKD-SVEAFVPVGAGSFIK 67
Query: 76 GTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLI 120
G L + +V+V IG+G V+K +D ++ R+ L+ + D+++
Sbjct: 68 GELKNTDEVIVSIGSGIAVKKDVDGARETIARQKKDLEDSLDKML 112
>sp|Q0W5H4|PFDA_UNCMA Prefoldin subunit alpha OS=Uncultured methanogenic archaeon RC-I
GN=pfdA PE=3 SV=1
Length = 138
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 55/100 (55%), Gaps = 12/100 (12%)
Query: 16 QLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVP 75
+++A+++Q NL+Q S+N++ +SA A+ L +G ++LVP+ A +V
Sbjct: 23 RMEALQQQA----NLIQASINDV-------DSALKAITSLEGAGEGHELLVPIGAGSFVH 71
Query: 76 GTLDDARKVLVDIGTGYFVEKTM-DEGKDYCERKINLLKS 114
T+ KVLV +G VE+T+ D K + R+ L K+
Sbjct: 72 ATIAKPDKVLVGLGADISVERTVADARKIFQARRTELEKA 111
>sp|A1RRQ6|PFDA_PYRIL Prefoldin subunit alpha OS=Pyrobaculum islandicum (strain DSM 4184
/ JCM 9189) GN=pfdA PE=3 SV=1
Length = 132
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 40 TATSRLESASTALHDLSL-RPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYF----- 93
T + LE +TAL + L + +G + LV + A L+V GT +AR+VL +G GY
Sbjct: 29 TVSELLEELTTALDGVRLLKTEGGERLVHIGAGLFVLGTF-NAREVLTPLGAGYHAFLDL 87
Query: 94 --VEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAV 135
E+ + E D + L+ N ++LIE A + + + + +
Sbjct: 88 ENAERILKERIDEYSKVKTSLEENIEKLIERAAQIRQVLERLGI 131
>sp|A9A592|PFDA_NITMS Prefoldin subunit alpha OS=Nitrosopumilus maritimus (strain SCM1)
GN=pfdA PE=3 SV=1
Length = 145
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 35 LNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFV 94
L R AT+ +ES + LS P+ + LVP+ YVP + K++++IG G V
Sbjct: 31 LGVFREATAAIES----IKSLSKNPE-SDTLVPIGLGTYVPTKISSDSKIILNIGAGVAV 85
Query: 95 EKTMDEGKDYCERKI 109
EK +Y E +I
Sbjct: 86 EKDFPSAINYLEERI 100
>sp|Q5UY26|PFDA_HALMA Prefoldin subunit alpha OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=pfdA PE=3
SV=1
Length = 154
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 22 EQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDA 81
EQ + EV + + + +R + ++ A A+ L G+ + VPL Y+ T++D
Sbjct: 22 EQMEQEVEAIDEEIERLREKQTDIDEAIEAIETLD---SGSTVQVPLGGDAYIRATIEDI 78
Query: 82 RKVLVDIGTGYFVEKTMD 99
+V+V +G GY E+ D
Sbjct: 79 DEVVVSLGGGYSAEREQD 96
>sp|B6YWD9|PFDA_THEON Prefoldin subunit alpha OS=Thermococcus onnurineus (strain NA1)
GN=pfdA PE=3 SV=1
Length = 147
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 11/83 (13%)
Query: 63 KMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEV 122
++LVP+ A ++ G + D +V +G+GY EK++D+ Y + +I +D+ I
Sbjct: 58 EILVPIGAGSFLKGMIVDKNSAIVSVGSGYATEKSLDDAIGYLDARIK----EYDEAI-- 111
Query: 123 ATKKKTISDEAAVILQAKLKQLA 145
+KT EA L+ +L++LA
Sbjct: 112 ---RKT--QEALAKLEGQLQELA 129
>sp|O33980|OMPF_SERMA Outer membrane protein F OS=Serratia marcescens GN=ompF PE=3 SV=1
Length = 374
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 42 TSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKV-LVDIGTGYFVEKTMDE 100
T E + D LRP+ L +L VPG D V V +GT Y+ K M
Sbjct: 282 TQNFEVTAQYQFDFGLRPE-VSYLQSKGKNLNVPGVGSDQDLVKYVSVGTTYYFNKNMST 340
Query: 101 GKDYCERKINLLKSN-FDQLIEVAT 124
Y + KINLL N F + +AT
Sbjct: 341 ---YVDYKINLLDDNDFTKATGIAT 362
>sp|O66961|PFDA_AQUAE Putative prefoldin subunit alpha OS=Aquifex aeolicus (strain VF5)
GN=aq_759 PE=3 SV=1
Length = 149
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 27 EVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLV 86
E++++ S+ ++RTA + L S L +L +G ++L+P+ A+ + + +V++
Sbjct: 36 EISVINQSITDLRTAEATLRS----LKELG---KGKEVLIPVGATAQIKAKSEGVDEVIM 88
Query: 87 DIGTGYFVEKTMDEGKDYCERKINLLKS 114
IGTG + DE D ++I L++
Sbjct: 89 SIGTGISAVMSYDEAVDRIRKEIAALEA 116
>sp|A8A8L9|PFDA_IGNH4 Prefoldin subunit alpha OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=pfdA PE=3 SV=1
Length = 160
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 7 GGMEKMSV--EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKM 64
GG EK+ + ++L+++ Q + L+D + + T L ++ L L+ +G +
Sbjct: 26 GGEEKVKLLQDELRSLLAQ----IEYLRDQIEAVNTVIDDLYASLEVLDYLTKEGKGKVV 81
Query: 65 LVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLK 113
LVP+ A ++ ++D V+ +G +E DE K E +I L+
Sbjct: 82 LVPIGAGNFIKAKIEDTNTVITSVGGRLSLEVPSDEAKKAIESRIAALE 130
>sp|Q32P97|UXT_BOVIN Protein UXT OS=Bos taurus GN=UXT PE=2 SV=1
Length = 156
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 64 MLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQL 119
M V L + +V + D ++ V +G G+F+E T+ E + +RK +LL D L
Sbjct: 69 MQVDLGCNFFVDTVVPDTSRIYVALGYGFFLELTLAEALKFIDRKSSLLTELSDNL 124
>sp|Q9HMN2|PFDA_HALSA Prefoldin subunit alpha OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=pfdA PE=3 SV=1
Length = 154
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 35 LNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFV 94
+ ++R + +E A AL L GA + VPL YV + D +V+V +G GY
Sbjct: 32 VASLRQEQTEIEEAKEALDVLET---GATVQVPLGGDAYVRAEVKDMDEVVVSLGGGYAA 88
Query: 95 EKTMDEGKDYCERKINLLKSNFDQL 119
E+ D + K + D +
Sbjct: 89 EQDSDAAASVLDEKKATIDGRIDDV 113
>sp|B0R7X6|PFDA_HALS3 Prefoldin subunit alpha OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=pfdA PE=3 SV=1
Length = 154
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 35 LNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFV 94
+ ++R + +E A AL L GA + VPL YV + D +V+V +G GY
Sbjct: 32 VASLRQEQTEIEEAKEALDVLET---GATVQVPLGGDAYVRAEVKDMDEVVVSLGGGYAA 88
Query: 95 EKTMDEGKDYCERKINLLKSNFDQL 119
E+ D + K + D +
Sbjct: 89 EQDSDAAASVLDEKKATIDGRIDDV 113
>sp|A2STI6|PFDA_METLZ Prefoldin subunit alpha OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=pfdA PE=3 SV=1
Length = 147
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 53/121 (43%)
Query: 1 MASSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQ 60
MAS+ + V L+A + + LL L I +A +++ +L S
Sbjct: 1 MASNTDQASLEQEVRSLQAYANEYSQQFELLTQQLRFIESARGEALASTESLEAFSGLEG 60
Query: 61 GAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLI 120
L+ L + V + D +K+LV IG G VEK ++E + ++ + ++ +L
Sbjct: 61 DVPTLLNLGGGISVHAIVTDTKKILVGIGAGITVEKPVEEAITFLHDRVTEMDASAKRLS 120
Query: 121 E 121
E
Sbjct: 121 E 121
>sp|Q9UBK9|UXT_HUMAN Protein UXT OS=Homo sapiens GN=UXT PE=1 SV=1
Length = 157
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 64 MLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLL 112
M V L + +V + D ++ V +G G+F+E T+ E + +RK +LL
Sbjct: 69 MQVDLGCNFFVDTVVPDTSRIYVALGYGFFLELTLAEALKFIDRKSSLL 117
>sp|Q9WTZ0|UXT_MOUSE Protein UXT OS=Mus musculus GN=Uxt PE=2 SV=1
Length = 157
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 64 MLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLL 112
M V L + +V + D ++ V +G G+F+E T+ E + +RK +LL
Sbjct: 69 MQVDLGCNFFVDTVVPDTSRIYVALGYGFFLELTLAEALKFIDRKSSLL 117
>sp|Q63ZY7|UXT_RAT Protein UXT OS=Rattus norvegicus GN=Uxt PE=2 SV=1
Length = 157
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 64 MLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLL 112
M V L + +V + D ++ V +G G+F+E T+ E + +RK +LL
Sbjct: 69 MQVDLGCNFFVDTMVPDTSRIYVALGYGFFLELTLAEALKFIDRKSSLL 117
>sp|A0RUF1|PFDA_CENSY Prefoldin subunit alpha OS=Cenarchaeum symbiosum (strain A) GN=pfdA
PE=3 SV=2
Length = 143
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 62 AKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKI 109
+++LVPL + + K++++IG G VEK D Y E +I
Sbjct: 53 SEVLVPLGLGTFAKSKVSSGEKIVINIGAGAAVEKDKDAALSYLESRI 100
>sp|O28216|PFDA_ARCFU Prefoldin subunit alpha OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=pfdA PE=3 SV=1
Length = 137
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 34/55 (61%)
Query: 65 LVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQL 119
L+ L ++ + +++K+LVDIG+G VE+ + E ++ + +I ++ N +++
Sbjct: 58 LMNLGGGVFAYVDVKNSKKMLVDIGSGVVVEREVGEAIEFVKNRIKKIEENQEKM 112
>sp|A2BN59|PFDA_HYPBU Prefoldin subunit alpha OS=Hyperthermus butylicus (strain DSM 5456
/ JCM 9403) GN=pfdA PE=3 SV=1
Length = 154
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAK-MLVPL--T 69
++EQL ++ Q +N LQ ++ I ++L + AL L+ +GA+ L+PL
Sbjct: 16 ALEQLSLLESQ----LNQLQATIREIEVRIAQLTAVEDALASLA---EGAEDALIPLDGR 68
Query: 70 ASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDY 104
++ VP ++ ++LV G FVE ++ +Y
Sbjct: 69 GTVLVPASIKKLERILVHAGLNVFVEVDREKALEY 103
>sp|A6UQB4|PFDA_METVS Prefoldin subunit alpha OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=pfdA PE=3 SV=1
Length = 146
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 27 EVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLV 86
+V LQ+ L+NI L A ++ SL+ G ML PL A +V + + K+++
Sbjct: 18 QVQKLQEELSNIDLMIMELVRAIESME--SLKTSGEIML-PLGAGSFVKADVKNPEKIIL 74
Query: 87 DIGTGYFVEKTMDE 100
+G +EK ++E
Sbjct: 75 SVGVDVLLEKDVEE 88
>sp|Q54ND3|UXT_DICDI Protein UXT homolog OS=Dictyostelium discoideum GN=DDB_G0285389
PE=3 SV=1
Length = 161
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 63 KMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEV 122
K ++ L + YV + D + VDIG G V+ T++E + K L ++ +E
Sbjct: 80 KTMINLGSECYVKARVQDTSYIYVDIGLGIHVKYTLEEAIKFINEKETFL----NKTVEN 135
Query: 123 ATKK 126
TKK
Sbjct: 136 QTKK 139
>sp|Q96M89|CC138_HUMAN Coiled-coil domain-containing protein 138 OS=Homo sapiens
GN=CCDC138 PE=1 SV=1
Length = 665
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 2 ASSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLS 56
A SK G+E+ + + + IKEQ D EV L + L T RL S+ AL +L+
Sbjct: 225 ALSKIKGVEEEVLTRFQIIKEQHDAEVEHLTEVLKEKNKETKRLRSSFDALKELN 279
>sp|Q3A4F1|MUTS_PELCD DNA mismatch repair protein MutS OS=Pelobacter carbinolicus (strain
DSM 2380 / Gra Bd 1) GN=mutS PE=3 SV=1
Length = 870
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 16/153 (10%)
Query: 10 EKMSVEQLKAIKEQT--------DLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQG 61
E+ QLK +E+ DLE L QD + R++ + AL +L +
Sbjct: 503 ERFFTPQLKEYEEKVLGAEDRLFDLEFELFQDLRERVAEQGERVQRTAEALAELDVLLSL 562
Query: 62 AKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINL-LKSNFDQLI 120
A + + YV T+DD+ ++++ G +E M+ G+ + + + + N +I
Sbjct: 563 ADV---AHSCDYVCPTMDDSDRLVIRDGRHPVIE-AMNLGEHFVPNDVEMDCRENQIMVI 618
Query: 121 ---EVATKKKTISDEAAVILQAKLKQLAPASSS 150
+A K + A + L A + L PA+S+
Sbjct: 619 TGPNMAGKSTYMRQVALITLMAHMGSLVPAASA 651
>sp|A4FW54|PFDA_METM5 Prefoldin subunit alpha OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=pfdA PE=3 SV=1
Length = 144
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 27 EVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLV 86
+V LQ+ L+NI L + ++ L ++L+PL A +V + + K+++
Sbjct: 18 QVQKLQEELSNIDMMIMELLKSIESMEGLKT---SKEILLPLGAGAFVNAQVQNPEKIVL 74
Query: 87 DIGTGYFVEKTMDE 100
+G +EK +DE
Sbjct: 75 SVGVDVLLEKDVDE 88
>sp|Q12ZJ7|PFDA_METBU Prefoldin subunit alpha OS=Methanococcoides burtonii (strain DSM
6242) GN=pfdA PE=3 SV=1
Length = 138
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 65 LVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDE 100
++PL A + + D K++V +G G VEKT E
Sbjct: 60 MIPLGAGALIHANIADVDKIVVSVGAGISVEKTPTE 95
>sp|Q9LZX8|BIG2_ARATH Brefeldin A-inhibited guanine nucleotide-exchange protein 2
OS=Arabidopsis thaliana GN=BIG2 PE=2 SV=1
Length = 1793
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 9 MEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLE 46
+++ ++E +KAI D E N LQD+ +I T SR E
Sbjct: 943 IKQRNIEAIKAILRLADEEGNYLQDAWEHILTCVSRFE 980
>sp|Q2FS96|PFDA_METHJ Prefoldin subunit alpha OS=Methanospirillum hungatei (strain JF-1 /
DSM 864) GN=pfdA PE=3 SV=1
Length = 149
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 62 AKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIE 121
A + +P+ L + T+ +V V IG+ V+KT + Y + +I +++ L E
Sbjct: 57 APVFMPIGGGLNIRATIIQPDEVFVSIGSDIIVQKTNEGAISYLQDRIKEMEATAKNLTE 116
Query: 122 VATK 125
V K
Sbjct: 117 VLQK 120
>sp|P37592|OMPD_SALTY Outer membrane porin protein OmpD OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=ompD PE=1 SV=2
Length = 362
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 38 IRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKV-LVDIGTGYFVEK 96
I T E+ + D LRP + L + GT D V +D+G Y+ K
Sbjct: 269 IANKTQNFEAVAQYQFDFGLRPS----IAYLKSKGKNLGTYGDQDLVEYIDVGATYYFNK 324
Query: 97 TMDEGKDYCERKINLL-KSNFDQLIEVAT 124
M DY KINLL S+F + +V+T
Sbjct: 325 NMSTFVDY---KINLLDDSDFTKAAKVST 350
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.127 0.330
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,508,276
Number of Sequences: 539616
Number of extensions: 1704741
Number of successful extensions: 5579
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 5511
Number of HSP's gapped (non-prelim): 117
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)