Query 031977
Match_columns 150
No_of_seqs 126 out of 627
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:57:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3048 Molecular chaperone Pr 100.0 5.1E-41 1.1E-45 244.0 18.9 142 1-142 1-143 (153)
2 PRK14011 prefoldin subunit alp 100.0 8.3E-34 1.8E-38 209.8 18.5 129 14-145 5-133 (144)
3 TIGR00293 prefoldin, archaeal 100.0 4.5E-32 9.7E-37 196.1 17.7 125 14-139 1-125 (126)
4 COG1730 GIM5 Predicted prefold 100.0 2E-31 4.4E-36 196.8 18.3 135 10-144 4-138 (145)
5 cd00584 Prefoldin_alpha Prefol 100.0 6.3E-31 1.4E-35 190.8 17.8 128 14-141 1-128 (129)
6 PRK03947 prefoldin subunit alp 100.0 1.8E-30 3.8E-35 191.1 19.9 134 12-145 6-139 (140)
7 PF02996 Prefoldin: Prefoldin 100.0 4.4E-30 9.5E-35 183.7 13.8 119 25-143 2-120 (120)
8 PRK01203 prefoldin subunit alp 100.0 1.7E-28 3.7E-33 177.9 18.5 119 15-134 3-121 (130)
9 cd00890 Prefoldin Prefoldin is 100.0 5.5E-28 1.2E-32 174.3 17.9 128 14-141 1-128 (129)
10 KOG3313 Molecular chaperone Pr 99.7 5.5E-16 1.2E-20 116.6 13.8 122 15-136 40-164 (187)
11 KOG3047 Predicted transcriptio 99.6 7.7E-14 1.7E-18 100.6 13.0 115 27-141 31-146 (157)
12 KOG3130 Uncharacterized conser 99.4 2.7E-12 5.9E-17 107.4 10.0 109 22-131 6-114 (514)
13 TIGR02338 gimC_beta prefoldin, 99.1 2E-09 4.4E-14 76.2 11.9 107 12-142 3-109 (110)
14 cd00632 Prefoldin_beta Prefold 99.0 1.7E-08 3.7E-13 70.8 11.2 102 15-140 2-103 (105)
15 PF01920 Prefoldin_2: Prefoldi 98.6 3.7E-06 8E-11 58.2 13.2 103 15-141 1-103 (106)
16 cd00890 Prefoldin Prefoldin is 98.6 1.1E-06 2.3E-11 63.0 10.6 107 14-133 8-127 (129)
17 TIGR00293 prefoldin, archaeal 98.5 1.4E-06 3E-11 62.7 9.9 111 22-146 2-125 (126)
18 PRK09343 prefoldin subunit bet 98.3 3.2E-05 7E-10 55.7 12.9 109 14-146 9-117 (121)
19 PRK03947 prefoldin subunit alp 98.3 1.5E-05 3.3E-10 58.3 11.1 116 13-145 4-132 (140)
20 cd00584 Prefoldin_alpha Prefol 98.3 2E-05 4.3E-10 56.8 11.3 107 14-133 8-127 (129)
21 COG1382 GimC Prefoldin, chaper 98.2 7.6E-05 1.6E-09 53.6 11.8 108 14-145 8-115 (119)
22 COG1730 GIM5 Predicted prefold 98.1 3.1E-05 6.8E-10 57.5 8.8 111 21-144 8-131 (145)
23 PRK01203 prefoldin subunit alp 98.0 0.00015 3.2E-09 53.0 11.3 102 22-141 3-121 (130)
24 PRK14011 prefoldin subunit alp 97.7 0.00084 1.8E-08 49.8 11.0 117 14-143 12-138 (144)
25 PF13758 Prefoldin_3: Prefoldi 97.5 7.4E-05 1.6E-09 52.0 2.9 94 34-129 3-97 (99)
26 KOG4098 Molecular chaperone Pr 97.4 0.0029 6.4E-08 46.1 10.2 100 12-135 15-114 (140)
27 KOG3478 Prefoldin subunit 6, K 97.1 0.033 7.1E-07 39.5 11.9 110 15-148 8-117 (120)
28 PF02996 Prefoldin: Prefoldin 96.8 0.028 6.2E-07 39.5 9.9 62 60-134 57-118 (120)
29 PRK00736 hypothetical protein; 90.7 2.6 5.7E-05 27.1 7.4 46 96-141 1-46 (68)
30 PF08946 Osmo_CC: Osmosensory 87.5 1.6 3.4E-05 26.1 4.1 37 97-133 2-38 (46)
31 PRK05771 V-type ATP synthase s 87.5 22 0.00047 32.2 15.1 40 17-56 91-130 (646)
32 PF13118 DUF3972: Protein of u 87.5 2.1 4.5E-05 31.1 5.6 75 59-137 26-108 (126)
33 PRK00295 hypothetical protein; 86.7 6.5 0.00014 25.3 7.8 47 96-142 1-47 (68)
34 PRK02793 phi X174 lysis protei 84.5 8.8 0.00019 25.0 7.4 48 96-143 4-51 (72)
35 PF06698 DUF1192: Protein of u 84.4 2.6 5.6E-05 26.6 4.2 31 7-37 16-46 (59)
36 PF04102 SlyX: SlyX; InterPro 83.2 9.7 0.00021 24.4 7.2 47 98-144 2-48 (69)
37 PRK04406 hypothetical protein; 82.5 11 0.00025 24.7 7.3 46 98-143 9-54 (75)
38 PF07889 DUF1664: Protein of u 82.0 6.8 0.00015 28.4 6.2 41 97-137 58-98 (126)
39 KOG1760 Molecular chaperone Pr 80.7 19 0.00042 26.1 14.2 52 91-142 72-123 (131)
40 PRK04325 hypothetical protein; 80.7 13 0.00029 24.3 7.3 43 98-140 7-49 (74)
41 PF08172 CASP_C: CASP C termin 80.1 20 0.00043 28.9 8.9 114 22-136 2-122 (248)
42 TIGR02231 conserved hypothetic 79.6 29 0.00062 30.5 10.6 97 24-141 76-172 (525)
43 PRK02119 hypothetical protein; 77.8 17 0.00036 23.7 7.3 45 98-142 7-51 (73)
44 PRK09343 prefoldin subunit bet 76.8 11 0.00023 26.9 5.9 100 13-136 15-114 (121)
45 PRK11637 AmiB activator; Provi 73.3 58 0.0013 27.9 13.7 42 101-142 90-131 (428)
46 PF09006 Surfac_D-trimer: Lung 73.2 14 0.00029 22.2 4.7 26 23-48 3-28 (46)
47 TIGR02338 gimC_beta prefoldin, 71.2 15 0.00033 25.5 5.4 97 14-134 12-108 (110)
48 PTZ00454 26S protease regulato 71.1 50 0.0011 28.3 9.6 44 11-54 14-64 (398)
49 COG1382 GimC Prefoldin, chaper 71.0 20 0.00044 25.8 6.1 96 15-134 16-111 (119)
50 cd01109 HTH_YyaN Helix-Turn-He 70.8 31 0.00066 23.8 7.0 40 96-135 58-107 (113)
51 PRK11637 AmiB activator; Provi 69.5 72 0.0016 27.3 14.1 44 98-141 80-123 (428)
52 PF02388 FemAB: FemAB family; 68.4 28 0.0006 29.8 7.5 32 92-123 234-265 (406)
53 cd00632 Prefoldin_beta Prefold 68.2 16 0.00034 25.1 5.0 96 14-133 8-103 (105)
54 PRK00846 hypothetical protein; 67.8 33 0.00071 22.7 7.1 43 98-140 11-53 (77)
55 PF04102 SlyX: SlyX; InterPro 67.7 29 0.00063 22.1 6.1 44 98-141 9-52 (69)
56 PF05377 FlaC_arch: Flagella a 67.6 25 0.00054 21.9 5.2 17 29-45 10-26 (55)
57 smart00787 Spc7 Spc7 kinetocho 66.9 74 0.0016 26.5 12.6 42 99-140 217-258 (312)
58 cd04769 HTH_MerR2 Helix-Turn-H 66.8 20 0.00043 25.0 5.3 38 97-134 76-113 (116)
59 PF08317 Spc7: Spc7 kinetochor 66.0 76 0.0016 26.3 10.7 84 14-140 179-263 (325)
60 PF14282 FlxA: FlxA-like prote 65.6 43 0.00092 23.2 6.8 45 97-141 16-71 (106)
61 PF04977 DivIC: Septum formati 65.4 6.7 0.00015 25.0 2.5 44 97-140 21-64 (80)
62 PF12718 Tropomyosin_1: Tropom 65.1 52 0.0011 24.1 9.1 94 15-144 24-120 (143)
63 KOG2577 Transcription factor E 64.5 29 0.00062 29.5 6.6 73 63-135 106-179 (354)
64 PF03670 UPF0184: Uncharacteri 62.9 44 0.00096 22.5 6.4 45 100-144 26-70 (83)
65 PF09278 MerR-DNA-bind: MerR, 60.7 30 0.00064 21.1 4.8 29 97-125 33-61 (65)
66 cd04776 HTH_GnyR Helix-Turn-He 60.5 50 0.0011 23.2 6.4 33 101-133 81-113 (118)
67 PF15456 Uds1: Up-regulated Du 59.4 64 0.0014 23.2 12.5 93 9-130 16-111 (124)
68 PF07544 Med9: RNA polymerase 59.2 34 0.00074 22.7 5.1 47 95-141 23-72 (83)
69 smart00806 AIP3 Actin interact 59.0 1.2E+02 0.0027 26.4 9.7 122 12-146 71-194 (426)
70 KOG0727 26S proteasome regulat 58.3 37 0.00081 28.2 6.1 81 8-96 21-105 (408)
71 PHA02562 46 endonuclease subun 58.1 1.2E+02 0.0026 26.5 9.8 31 99-129 298-328 (562)
72 PF03962 Mnd1: Mnd1 family; I 57.5 54 0.0012 25.1 6.7 46 88-133 50-95 (188)
73 PF08181 DegQ: DegQ (SacQ) fam 57.3 37 0.0008 19.8 4.9 35 13-47 5-39 (46)
74 PF12210 Hrs_helical: Hepatocy 57.1 55 0.0012 22.6 5.9 38 15-56 46-83 (96)
75 PF12757 DUF3812: Protein of u 56.8 46 0.001 23.9 5.8 10 65-74 60-69 (126)
76 PRK13922 rod shape-determining 55.9 70 0.0015 25.6 7.4 41 14-54 71-111 (276)
77 PF01330 RuvA_N: RuvA N termin 55.7 20 0.00042 22.2 3.3 30 72-101 3-35 (61)
78 PF04949 Transcrip_act: Transc 55.5 73 0.0016 23.9 6.7 45 97-141 81-125 (159)
79 PF07195 FliD_C: Flagellar hoo 55.1 81 0.0017 24.8 7.5 43 103-145 189-231 (239)
80 PRK10328 DNA binding protein, 55.0 75 0.0016 23.2 6.7 45 10-54 19-63 (134)
81 cd01106 HTH_TipAL-Mta Helix-Tu 54.9 42 0.00091 22.7 5.2 13 96-108 58-70 (103)
82 PTZ00464 SNF-7-like protein; P 54.7 59 0.0013 25.5 6.5 36 96-131 14-49 (211)
83 PF00038 Filament: Intermediat 54.1 1.2E+02 0.0025 24.5 8.8 59 83-141 169-229 (312)
84 KOG3905 Dynein light intermedi 53.6 45 0.00097 28.7 5.9 54 61-125 205-258 (473)
85 cd01282 HTH_MerR-like_sg3 Heli 53.6 72 0.0016 22.0 6.7 11 96-106 57-67 (112)
86 PF05377 FlaC_arch: Flagella a 53.2 53 0.0011 20.4 6.6 36 105-140 5-40 (55)
87 PRK10947 global DNA-binding tr 52.8 83 0.0018 23.0 6.7 43 10-52 19-61 (135)
88 COG1862 YajC Preprotein transl 52.7 75 0.0016 22.0 6.2 55 43-102 32-86 (97)
89 PF14282 FlxA: FlxA-like prote 52.6 59 0.0013 22.5 5.6 37 10-46 42-78 (106)
90 PF07195 FliD_C: Flagellar hoo 52.6 45 0.00097 26.2 5.7 48 98-145 191-238 (239)
91 cd01106 HTH_TipAL-Mta Helix-Tu 52.3 71 0.0015 21.6 6.0 44 11-54 57-101 (103)
92 PF04977 DivIC: Septum formati 51.5 56 0.0012 20.5 5.1 41 14-54 19-59 (80)
93 TIGR02894 DNA_bind_RsfA transc 51.2 1E+02 0.0022 23.4 7.0 16 10-25 78-93 (161)
94 PF06103 DUF948: Bacterial pro 51.0 69 0.0015 21.1 6.3 47 98-144 24-70 (90)
95 PRK06664 fliD flagellar hook-a 50.6 38 0.00082 31.2 5.5 39 105-143 598-636 (661)
96 KOG1003 Actin filament-coating 50.5 57 0.0012 25.6 5.7 43 102-144 160-202 (205)
97 COG3685 Uncharacterized protei 50.2 19 0.0004 27.4 2.9 55 84-139 10-64 (167)
98 KOG1655 Protein involved in va 49.6 41 0.0009 26.4 4.8 37 97-133 16-52 (218)
99 PRK02224 chromosome segregatio 49.2 2.3E+02 0.0049 26.5 13.9 39 100-138 258-296 (880)
100 PRK08032 fliD flagellar cappin 49.0 44 0.00095 29.1 5.5 39 105-143 404-442 (462)
101 cd04775 HTH_Cfa-like Helix-Tur 48.9 80 0.0017 21.4 5.8 40 96-135 58-99 (102)
102 PF09730 BicD: Microtubule-ass 48.5 65 0.0014 30.0 6.6 44 91-135 344-387 (717)
103 cd01109 HTH_YyaN Helix-Turn-He 48.3 75 0.0016 21.8 5.7 35 97-131 76-110 (113)
104 PRK00888 ftsB cell division pr 48.3 75 0.0016 22.0 5.6 43 13-55 28-70 (105)
105 TIGR00219 mreC rod shape-deter 48.3 1.2E+02 0.0027 24.7 7.7 24 14-37 68-91 (283)
106 PF11068 YlqD: YlqD protein; 48.2 1E+02 0.0023 22.3 7.5 17 74-92 96-112 (131)
107 COG3879 Uncharacterized protei 48.0 1E+02 0.0022 25.0 6.9 31 16-46 54-84 (247)
108 PRK08032 fliD flagellar cappin 47.8 47 0.001 29.0 5.5 45 101-145 407-451 (462)
109 PRK07737 fliD flagellar cappin 47.6 46 0.00099 29.4 5.4 42 103-144 444-485 (501)
110 PHA02047 phage lambda Rz1-like 47.4 35 0.00075 23.7 3.6 43 103-145 37-79 (101)
111 PRK06798 fliD flagellar cappin 47.4 41 0.00089 29.3 5.0 40 104-143 376-415 (440)
112 PRK02224 chromosome segregatio 47.3 2.4E+02 0.0053 26.3 12.5 41 14-54 407-447 (880)
113 TIGR02047 CadR-PbrR Cd(II)/Pb( 46.2 83 0.0018 22.3 5.8 26 110-135 82-107 (127)
114 TIGR02043 ZntR Zn(II)-responsi 46.1 1.1E+02 0.0023 21.8 7.1 11 96-106 59-69 (131)
115 PF10805 DUF2730: Protein of u 46.0 98 0.0021 21.4 6.2 35 105-139 47-83 (106)
116 PRK13752 putative transcriptio 46.0 1.2E+02 0.0025 22.2 7.0 25 110-134 87-111 (144)
117 COG3883 Uncharacterized protei 45.8 91 0.002 25.5 6.4 41 105-145 71-111 (265)
118 PRK00295 hypothetical protein; 45.7 79 0.0017 20.2 6.9 43 98-140 10-52 (68)
119 PTZ00361 26 proteosome regulat 45.6 1.8E+02 0.004 25.3 8.7 82 14-96 60-160 (438)
120 PRK06798 fliD flagellar cappin 45.2 53 0.0012 28.6 5.4 48 98-145 377-424 (440)
121 PF01486 K-box: K-box region; 44.9 95 0.0021 20.9 6.3 30 7-36 41-70 (100)
122 PRK04406 hypothetical protein; 44.3 89 0.0019 20.4 6.9 42 98-139 16-57 (75)
123 PF09278 MerR-DNA-bind: MerR, 44.3 72 0.0016 19.3 6.7 29 26-54 36-64 (65)
124 KOG4552 Vitamin-D-receptor int 44.1 1.2E+02 0.0026 24.2 6.6 49 98-146 72-120 (272)
125 PRK04325 hypothetical protein; 44.1 88 0.0019 20.3 6.9 43 98-140 14-56 (74)
126 cd04770 HTH_HMRTR Helix-Turn-H 43.9 1.1E+02 0.0023 21.3 7.0 11 96-106 58-68 (123)
127 PRK10780 periplasmic chaperone 43.8 73 0.0016 23.6 5.3 36 47-83 124-159 (165)
128 PF00384 Molybdopterin: Molybd 43.8 32 0.0007 28.7 3.8 28 88-115 12-39 (432)
129 PF09726 Macoilin: Transmembra 43.5 2.5E+02 0.0054 26.1 9.6 40 100-139 538-577 (697)
130 PF02388 FemAB: FemAB family; 43.3 58 0.0013 27.8 5.3 21 66-90 303-323 (406)
131 PRK00736 hypothetical protein; 43.0 88 0.0019 20.0 6.9 42 98-139 10-51 (68)
132 PF00261 Tropomyosin: Tropomyo 42.9 1.6E+02 0.0035 23.1 7.7 46 99-144 189-234 (237)
133 PRK06664 fliD flagellar hook-a 42.8 43 0.00093 30.8 4.6 49 99-147 599-647 (661)
134 PRK02119 hypothetical protein; 42.4 94 0.002 20.1 6.9 42 98-139 14-55 (73)
135 PRK14127 cell division protein 42.4 1.1E+02 0.0023 21.6 5.7 46 9-54 20-65 (109)
136 KOG1760 Molecular chaperone Pr 41.4 1.4E+02 0.003 21.8 7.6 87 27-130 31-118 (131)
137 KOG0250 DNA repair protein RAD 41.4 1.4E+02 0.0031 29.1 7.8 73 62-137 622-698 (1074)
138 cd04786 HTH_MerR-like_sg7 Heli 41.4 1.2E+02 0.0025 21.8 5.9 29 98-126 76-104 (131)
139 PF06013 WXG100: Proteins of 1 41.0 86 0.0019 19.3 5.9 33 12-44 4-36 (86)
140 PF12329 TMF_DNA_bd: TATA elem 40.8 1E+02 0.0022 20.0 5.7 35 101-135 34-68 (74)
141 KOG3478 Prefoldin subunit 6, K 40.7 1.3E+02 0.0029 21.4 6.2 39 97-135 73-111 (120)
142 PRK02793 phi X174 lysis protei 40.6 1E+02 0.0022 19.9 6.9 43 98-140 13-55 (72)
143 PF08285 DPM3: Dolichol-phosph 40.6 31 0.00068 23.5 2.6 32 86-117 54-85 (91)
144 PF11629 Mst1_SARAH: C termina 40.6 84 0.0018 19.0 4.9 30 9-38 5-38 (49)
145 cd01107 HTH_BmrR Helix-Turn-He 40.4 81 0.0017 21.6 4.8 9 97-105 60-68 (108)
146 cd04776 HTH_GnyR Helix-Turn-He 40.3 1.3E+02 0.0028 21.1 7.1 37 16-52 77-113 (118)
147 cd04789 HTH_Cfa Helix-Turn-Hel 40.2 87 0.0019 21.2 4.9 20 112-131 76-95 (102)
148 PF09789 DUF2353: Uncharacteri 40.1 1.2E+02 0.0025 25.5 6.4 40 12-51 189-228 (319)
149 KOG3048 Molecular chaperone Pr 39.7 1.6E+02 0.0035 22.0 13.5 70 60-145 81-150 (153)
150 PRK05585 yajC preprotein trans 39.5 1.3E+02 0.0028 20.9 6.2 49 46-99 44-92 (106)
151 cd01282 HTH_MerR-like_sg3 Heli 39.4 1E+02 0.0023 21.2 5.3 33 96-128 77-109 (112)
152 cd04785 HTH_CadR-PbrR-like Hel 39.4 1.2E+02 0.0026 21.3 5.7 24 111-134 83-106 (126)
153 PRK04863 mukB cell division pr 39.4 4.1E+02 0.009 27.1 10.9 37 103-139 1077-1113(1486)
154 cd04770 HTH_HMRTR Helix-Turn-H 39.3 1.2E+02 0.0027 20.9 5.7 33 97-129 76-108 (123)
155 TIGR02894 DNA_bind_RsfA transc 38.7 1.7E+02 0.0037 22.1 7.4 33 109-141 120-152 (161)
156 PF06698 DUF1192: Protein of u 38.2 1E+02 0.0022 19.3 5.2 29 105-133 26-54 (59)
157 COG5509 Uncharacterized small 38.2 1E+02 0.0022 19.6 4.4 32 105-136 30-61 (65)
158 TIGR01062 parC_Gneg DNA topois 38.2 3.4E+02 0.0075 25.4 9.9 45 95-139 404-449 (735)
159 KOG3501 Molecular chaperone Pr 37.9 1E+02 0.0022 21.8 4.9 104 22-142 6-109 (114)
160 KOG3047 Predicted transcriptio 37.9 1E+02 0.0022 22.8 5.0 85 34-131 48-143 (157)
161 cd04787 HTH_HMRTR_unk Helix-Tu 37.8 1.5E+02 0.0032 21.1 6.2 27 110-136 82-108 (133)
162 TIGR02051 MerR Hg(II)-responsi 37.7 1.4E+02 0.0031 20.9 5.8 11 96-106 57-67 (124)
163 cd01107 HTH_BmrR Helix-Turn-He 37.7 1.3E+02 0.0029 20.5 6.7 32 99-130 74-105 (108)
164 PF11262 Tho2: Transcription f 37.5 2E+02 0.0044 23.5 7.5 38 103-140 49-86 (298)
165 cd04783 HTH_MerR1 Helix-Turn-H 37.1 1.1E+02 0.0024 21.4 5.2 21 99-119 76-96 (126)
166 PF03148 Tektin: Tektin family 37.0 2.5E+02 0.0054 23.9 8.1 28 117-144 229-256 (384)
167 TIGR02051 MerR Hg(II)-responsi 36.9 1.5E+02 0.0032 20.8 7.1 33 96-128 72-104 (124)
168 PRK09514 zntR zinc-responsive 36.9 1.4E+02 0.0031 21.5 5.9 11 96-106 59-69 (140)
169 PF10400 Vir_act_alpha_C: Viru 36.4 97 0.0021 19.9 4.6 33 95-127 16-48 (90)
170 cd01108 HTH_CueR Helix-Turn-He 36.4 1.5E+02 0.0032 20.9 5.8 27 110-136 82-108 (127)
171 TIGR02043 ZntR Zn(II)-responsi 36.2 1.5E+02 0.0034 21.0 5.9 32 97-128 78-109 (131)
172 cd04784 HTH_CadR-PbrR Helix-Tu 36.2 1.5E+02 0.0032 20.8 5.8 11 96-106 58-68 (127)
173 PF11221 Med21: Subunit 21 of 36.1 1.7E+02 0.0037 21.3 6.2 36 107-142 104-139 (144)
174 cd02765 MopB_4 The MopB_4 CD i 36.0 27 0.00059 31.0 2.2 41 75-115 47-93 (567)
175 PHA01750 hypothetical protein 35.8 1.2E+02 0.0027 19.6 5.4 33 102-134 37-69 (75)
176 PF10438 Cyc-maltodext_C: Cycl 35.6 40 0.00088 22.2 2.5 20 69-88 8-27 (78)
177 cd04784 HTH_CadR-PbrR Helix-Tu 35.4 1.6E+02 0.0034 20.7 7.1 31 97-127 76-106 (127)
178 smart00502 BBC B-Box C-termina 35.3 1.4E+02 0.003 20.0 7.4 44 98-141 5-48 (127)
179 PF13356 DUF4102: Domain of un 35.3 95 0.0021 20.3 4.4 29 86-114 48-76 (89)
180 cd01108 HTH_CueR Helix-Turn-He 35.3 1.6E+02 0.0035 20.7 7.1 30 99-128 78-107 (127)
181 cd02769 MopB_DMSOR-BSOR-TMAOR 35.2 47 0.001 29.8 3.6 27 89-115 69-95 (609)
182 TIGR02209 ftsL_broad cell divi 35.0 1.2E+02 0.0027 19.4 5.0 40 15-55 27-66 (85)
183 PF07889 DUF1664: Protein of u 34.7 1.8E+02 0.0038 21.1 6.3 37 14-50 77-113 (126)
184 PF09304 Cortex-I_coil: Cortex 34.6 1.7E+02 0.0036 20.7 6.4 32 14-45 32-63 (107)
185 PF01920 Prefoldin_2: Prefoldi 34.6 1.4E+02 0.003 19.8 5.8 93 15-131 8-100 (106)
186 TIGR02047 CadR-PbrR Cd(II)/Pb( 34.6 1.7E+02 0.0036 20.7 7.1 34 97-130 76-109 (127)
187 PRK10803 tol-pal system protei 34.4 2E+02 0.0044 23.0 6.9 8 72-79 24-31 (263)
188 PRK14603 ruvA Holliday junctio 34.4 70 0.0015 24.7 4.0 31 72-102 3-36 (197)
189 COG1345 FliD Flagellar capping 34.3 78 0.0017 28.0 4.8 48 99-146 421-468 (483)
190 PRK09514 zntR zinc-responsive 34.1 1.8E+02 0.0039 21.0 7.1 32 97-128 78-109 (140)
191 PF08232 Striatin: Striatin fa 34.1 1.8E+02 0.0039 21.0 6.5 40 105-144 30-69 (134)
192 PRK10227 DNA-binding transcrip 33.9 1.8E+02 0.0038 21.0 5.9 24 101-124 80-103 (135)
193 PRK10227 DNA-binding transcrip 33.9 1.8E+02 0.0039 20.9 7.1 42 96-137 58-109 (135)
194 COG3883 Uncharacterized protei 33.6 1.9E+02 0.0042 23.6 6.5 35 103-137 48-82 (265)
195 COG1729 Uncharacterized protei 33.6 1.6E+02 0.0035 24.0 6.2 52 92-144 48-99 (262)
196 PF12732 YtxH: YtxH-like prote 33.5 1.3E+02 0.0028 19.1 7.2 51 93-143 19-70 (74)
197 cd04783 HTH_MerR1 Helix-Turn-H 33.4 1.7E+02 0.0037 20.5 7.1 43 95-137 57-107 (126)
198 cd04766 HTH_HspR Helix-Turn-He 33.4 1.2E+02 0.0027 19.9 4.7 9 97-105 60-68 (91)
199 PF09340 NuA4: Histone acetylt 33.3 1.3E+02 0.0028 19.8 4.7 27 14-40 4-30 (80)
200 PF10046 BLOC1_2: Biogenesis o 33.3 1.6E+02 0.0034 20.0 6.6 36 15-54 52-87 (99)
201 TIGR02044 CueR Cu(I)-responsiv 33.1 1.7E+02 0.0038 20.5 5.8 25 111-135 83-107 (127)
202 PF05499 DMAP1: DNA methyltran 33.0 2.3E+02 0.0049 21.8 7.3 53 5-57 117-169 (176)
203 PF11690 DUF3287: Protein of u 33.0 93 0.002 22.0 4.1 63 71-144 15-77 (109)
204 COG4026 Uncharacterized protei 32.9 2.7E+02 0.0057 22.6 9.3 35 71-107 233-267 (290)
205 PRK13752 putative transcriptio 32.9 1.6E+02 0.0035 21.4 5.6 34 98-131 82-115 (144)
206 cd02755 MopB_Thiosulfate-R-lik 32.9 61 0.0013 27.8 3.8 27 89-115 67-93 (454)
207 PRK08724 fliD flagellar cappin 32.9 1.1E+02 0.0023 28.4 5.5 37 106-142 616-652 (673)
208 PF06103 DUF948: Bacterial pro 32.5 1.5E+02 0.0031 19.5 4.9 35 106-140 25-59 (90)
209 PF12795 MscS_porin: Mechanose 32.5 1.9E+02 0.0042 22.6 6.4 40 7-46 73-112 (240)
210 cd00894 PI3Kc_IB_gamma Phospho 32.4 2E+02 0.0044 24.5 6.8 40 48-87 39-78 (365)
211 PF11819 DUF3338: Domain of un 32.3 1.8E+02 0.0038 21.5 5.6 55 75-134 4-59 (138)
212 PRK00561 ppnK inorganic polyph 32.2 1.1E+02 0.0023 24.8 4.9 49 60-108 32-86 (259)
213 cd02772 MopB_NDH-1_NuoG2 MopB_ 32.0 43 0.00093 28.1 2.7 26 90-115 63-88 (414)
214 cd04785 HTH_CadR-PbrR-like Hel 32.0 1.8E+02 0.0039 20.4 7.1 32 98-129 77-108 (126)
215 cd03199 GST_C_GRX2 GST_C famil 31.7 1.4E+02 0.0031 21.6 5.0 27 93-119 28-54 (128)
216 PF13600 DUF4140: N-terminal d 31.7 1.6E+02 0.0035 19.7 5.8 34 104-137 67-100 (104)
217 PRK10884 SH3 domain-containing 31.4 2.5E+02 0.0055 21.9 12.6 36 105-140 137-172 (206)
218 PF14193 DUF4315: Domain of un 31.4 1.6E+02 0.0035 19.7 5.4 26 106-131 7-32 (83)
219 TIGR02044 CueR Cu(I)-responsiv 30.9 1.9E+02 0.0041 20.3 7.1 31 99-129 78-108 (127)
220 TIGR02164 torA trimethylamine- 30.7 58 0.0013 30.4 3.5 27 89-115 110-136 (822)
221 PRK14872 rod shape-determining 30.7 2.1E+02 0.0046 24.2 6.6 30 13-42 58-87 (337)
222 cd02770 MopB_DmsA-EC This CD ( 30.6 62 0.0014 29.0 3.6 27 89-115 71-97 (617)
223 PF10186 Atg14: UV radiation r 30.6 2.7E+02 0.0058 21.9 7.7 45 98-142 61-105 (302)
224 PF14131 DUF4298: Domain of un 30.4 1.7E+02 0.0037 19.6 6.2 35 14-48 2-36 (90)
225 PF10458 Val_tRNA-synt_C: Valy 30.2 65 0.0014 20.2 2.8 34 93-126 32-65 (66)
226 PRK00068 hypothetical protein; 30.2 88 0.0019 30.2 4.6 45 61-105 830-884 (970)
227 PRK02509 hypothetical protein; 30.2 79 0.0017 30.5 4.3 45 61-105 902-955 (973)
228 COG3074 Uncharacterized protei 30.2 59 0.0013 21.3 2.5 32 11-42 24-55 (79)
229 PRK05886 yajC preprotein trans 30.1 2E+02 0.0043 20.3 6.2 48 46-98 30-77 (109)
230 TIGR00739 yajC preprotein tran 30.0 1.7E+02 0.0037 19.4 6.0 49 46-99 29-77 (84)
231 PF07106 TBPIP: Tat binding pr 29.9 1.3E+02 0.0029 22.1 4.8 19 21-39 88-106 (169)
232 KOG2391 Vacuolar sorting prote 29.8 3.2E+02 0.007 23.3 7.4 20 91-110 308-327 (365)
233 PF10148 SCHIP-1: Schwannomin- 29.7 1.4E+02 0.0029 24.1 5.0 36 7-42 168-203 (238)
234 PF06657 Cep57_MT_bd: Centroso 29.6 1.7E+02 0.0036 19.2 5.2 39 7-45 5-43 (79)
235 PF04568 IATP: Mitochondrial A 29.6 2E+02 0.0042 20.0 7.0 48 91-138 52-100 (100)
236 PRK09795 aminopeptidase; Provi 29.5 2.5E+02 0.0055 23.2 6.9 37 61-97 180-225 (361)
237 PRK14605 ruvA Holliday junctio 29.4 1.1E+02 0.0023 23.6 4.3 31 73-103 4-37 (194)
238 PF04111 APG6: Autophagy prote 29.4 3.2E+02 0.0069 22.6 7.4 39 99-137 42-80 (314)
239 cd04786 HTH_MerR-like_sg7 Heli 29.3 2.1E+02 0.0047 20.4 7.0 39 96-134 58-105 (131)
240 cd04777 HTH_MerR-like_sg1 Heli 29.2 1.1E+02 0.0024 20.8 4.0 11 96-106 56-66 (107)
241 PF12725 DUF3810: Protein of u 29.1 37 0.0008 28.2 1.8 31 7-37 90-120 (318)
242 PF10498 IFT57: Intra-flagella 29.0 2.3E+02 0.005 24.1 6.6 45 96-140 248-292 (359)
243 PRK14127 cell division protein 29.0 2.1E+02 0.0045 20.2 6.8 37 14-50 32-68 (109)
244 PF13815 Dzip-like_N: Iguana/D 29.0 1.5E+02 0.0033 20.7 4.8 41 9-49 63-103 (118)
245 PRK01156 chromosome segregatio 29.0 4.9E+02 0.011 24.4 13.4 40 99-138 468-507 (895)
246 COG3937 Uncharacterized conser 28.9 2.1E+02 0.0046 20.2 7.1 28 95-122 38-65 (108)
247 cd00279 YlxR Ylxr homologs; gr 28.8 1.3E+02 0.0029 19.7 4.2 33 75-107 19-56 (79)
248 PF04728 LPP: Lipoprotein leuc 28.7 1.5E+02 0.0033 18.4 6.6 31 108-138 4-34 (56)
249 PF10398 DUF2443: Protein of u 28.7 1.1E+02 0.0024 20.2 3.6 21 19-39 50-70 (79)
250 PF03670 UPF0184: Uncharacteri 28.6 1.5E+02 0.0033 19.9 4.3 36 107-142 26-61 (83)
251 PF13094 CENP-Q: CENP-Q, a CEN 28.6 2.4E+02 0.0051 20.6 11.3 38 10-47 18-55 (160)
252 KOG4460 Nuclear pore complex, 28.5 4.7E+02 0.01 24.1 10.8 46 94-139 656-701 (741)
253 PHA02751 hypothetical protein; 28.4 1.7E+02 0.0038 22.7 5.2 68 63-130 124-201 (233)
254 TIGR01242 26Sp45 26S proteasom 28.4 1.6E+02 0.0035 24.4 5.5 56 16-71 3-65 (364)
255 PRK13182 racA polar chromosome 28.3 2.1E+02 0.0045 21.8 5.7 34 97-130 82-115 (175)
256 PHA02107 hypothetical protein 28.2 2.1E+02 0.0047 21.9 5.6 51 87-137 157-207 (216)
257 PF03961 DUF342: Protein of un 28.1 3.6E+02 0.0079 23.2 7.8 29 62-90 286-315 (451)
258 cd02763 MopB_2 The MopB_2 CD i 28.0 73 0.0016 29.4 3.7 26 89-114 66-91 (679)
259 PF05190 MutS_IV: MutS family 27.9 1.2E+02 0.0025 19.4 3.8 18 90-107 68-85 (92)
260 PF14962 AIF-MLS: Mitochondria 27.9 20 0.00043 27.6 0.0 29 88-116 57-85 (180)
261 PF13814 Replic_Relax: Replica 27.8 1E+02 0.0022 22.7 3.9 41 79-119 136-181 (191)
262 cd04787 HTH_HMRTR_unk Helix-Tu 27.8 2.2E+02 0.0049 20.1 6.4 31 25-55 85-115 (133)
263 COG5391 Phox homology (PX) dom 27.6 4.5E+02 0.0098 23.6 10.5 52 84-135 431-482 (524)
264 PRK13901 ruvA Holliday junctio 27.6 1E+02 0.0022 24.0 3.9 30 72-101 3-35 (196)
265 PRK08724 fliD flagellar cappin 27.6 1.8E+02 0.004 26.9 6.1 47 99-145 616-662 (673)
266 PRK07352 F0F1 ATP synthase sub 27.5 1.9E+02 0.0041 21.5 5.3 47 90-139 36-82 (174)
267 PRK14604 ruvA Holliday junctio 27.4 1.3E+02 0.0027 23.3 4.4 31 72-102 3-36 (195)
268 cd04779 HTH_MerR-like_sg4 Heli 27.4 2.4E+02 0.0052 20.3 6.7 39 104-142 78-116 (134)
269 PRK09039 hypothetical protein; 27.1 3.7E+02 0.0081 22.5 10.1 30 98-127 156-185 (343)
270 PF06937 EURL: EURL protein; 27.1 2E+02 0.0043 23.7 5.6 30 8-37 215-244 (285)
271 PRK15002 redox-sensitivie tran 27.0 2.6E+02 0.0057 20.6 6.8 42 96-137 68-120 (154)
272 PRK05771 V-type ATP synthase s 27.0 4.8E+02 0.01 23.6 13.9 36 98-133 213-248 (646)
273 TIGR00084 ruvA Holliday juncti 26.7 1.2E+02 0.0025 23.3 4.1 31 72-102 3-36 (191)
274 PF13094 CENP-Q: CENP-Q, a CEN 26.4 1.9E+02 0.0041 21.2 5.1 40 13-52 120-159 (160)
275 cd01716 Hfq Hfq, an abundant, 26.4 92 0.002 19.7 2.9 31 60-90 10-40 (61)
276 TIGR01706 NAPA periplasmic nit 26.4 55 0.0012 30.6 2.6 27 89-115 112-138 (830)
277 cd04775 HTH_Cfa-like Helix-Tur 26.3 2E+02 0.0044 19.3 4.9 42 12-54 58-99 (102)
278 PF12958 DUF3847: Protein of u 26.1 2.1E+02 0.0046 19.3 5.5 34 13-46 2-35 (86)
279 COG1792 MreC Cell shape-determ 26.0 3.6E+02 0.0079 22.0 7.9 10 81-90 131-140 (284)
280 PF05626 DUF790: Protein of un 26.0 84 0.0018 27.0 3.4 46 63-114 292-337 (379)
281 PF07743 HSCB_C: HSCB C-termin 25.8 1.8E+02 0.0039 18.4 5.2 42 13-55 25-66 (78)
282 PRK14606 ruvA Holliday junctio 25.8 1.2E+02 0.0026 23.2 4.0 30 72-101 3-36 (188)
283 cd02750 MopB_Nitrate-R-NarG-li 25.7 89 0.0019 26.9 3.6 27 89-115 78-104 (461)
284 PF10234 Cluap1: Clusterin-ass 25.5 3.8E+02 0.0081 21.9 7.3 39 94-132 163-201 (267)
285 PRK13729 conjugal transfer pil 25.5 2.8E+02 0.0062 24.6 6.6 52 92-143 61-119 (475)
286 cd02751 MopB_DMSOR-like The Mo 25.5 88 0.0019 28.0 3.7 26 90-115 70-95 (609)
287 KOG2264 Exostosin EXT1L [Signa 25.4 2.7E+02 0.0059 25.7 6.5 49 92-140 91-140 (907)
288 PRK09129 NADH dehydrogenase su 25.4 77 0.0017 29.3 3.4 42 74-115 263-306 (776)
289 PF03148 Tektin: Tektin family 25.4 4.2E+02 0.0091 22.5 9.9 111 15-143 53-166 (384)
290 PF09285 Elong-fact-P_C: Elong 25.4 81 0.0018 19.5 2.4 35 62-96 22-56 (56)
291 cd02754 MopB_Nitrate-R-NapA-li 25.3 1.2E+02 0.0025 26.8 4.4 38 77-114 48-88 (565)
292 PRK15102 trimethylamine N-oxid 25.2 87 0.0019 29.2 3.7 28 89-116 113-140 (825)
293 cd04790 HTH_Cfa-like_unk Helix 25.0 3E+02 0.0064 20.6 7.0 41 97-137 60-104 (172)
294 PF09726 Macoilin: Transmembra 25.0 76 0.0016 29.4 3.2 117 15-137 541-659 (697)
295 TIGR00509 bisC_fam molybdopter 24.9 88 0.0019 28.9 3.6 27 89-115 67-93 (770)
296 PRK07860 NADH dehydrogenase su 24.8 44 0.00096 31.2 1.7 37 78-114 273-312 (797)
297 cd02759 MopB_Acetylene-hydrata 24.7 97 0.0021 26.7 3.7 27 89-115 66-92 (477)
298 PF11285 DUF3086: Protein of u 24.7 1.4E+02 0.003 24.5 4.3 31 11-41 3-33 (283)
299 COG3584 Uncharacterized protei 24.6 48 0.001 23.5 1.5 14 63-76 56-69 (109)
300 PRK13532 nitrate reductase cat 24.5 82 0.0018 29.4 3.4 25 90-114 113-137 (830)
301 PF00170 bZIP_1: bZIP transcri 24.3 1.8E+02 0.0039 17.8 5.9 29 22-50 29-57 (64)
302 TIGR01950 SoxR redox-sensitive 24.3 2.8E+02 0.0061 20.1 6.8 27 111-137 84-110 (142)
303 PF06295 DUF1043: Protein of u 24.3 2.7E+02 0.0057 19.9 5.4 12 31-42 37-48 (128)
304 PHA03052 Hypothetical protein; 24.3 2.1E+02 0.0045 18.6 4.3 37 62-98 5-45 (69)
305 TIGR03073 release_rtcB release 24.2 38 0.00083 28.7 1.1 37 66-103 43-79 (356)
306 PF06717 DUF1202: Protein of u 24.2 1.9E+02 0.0042 24.0 5.0 54 78-131 122-176 (308)
307 PF11853 DUF3373: Protein of u 24.2 83 0.0018 28.0 3.1 28 108-135 32-59 (489)
308 PF04201 TPD52: Tumour protein 24.2 2.3E+02 0.0051 21.4 5.2 35 102-136 31-65 (162)
309 TIGR01063 gyrA DNA gyrase, A s 24.1 6.1E+02 0.013 23.9 9.3 44 96-139 408-452 (800)
310 PRK07737 fliD flagellar cappin 24.0 1.6E+02 0.0035 26.0 5.0 38 108-145 442-479 (501)
311 smart00502 BBC B-Box C-termina 24.0 2.3E+02 0.0049 18.9 4.9 30 26-55 72-101 (127)
312 COG2999 GrxB Glutaredoxin 2 [P 23.8 1.9E+02 0.0041 22.7 4.6 47 93-139 110-156 (215)
313 TIGR01242 26Sp45 26S proteasom 23.8 4.2E+02 0.0091 21.9 9.4 34 14-47 8-41 (364)
314 PF15569 Imm21: Immunity prote 23.7 2.5E+02 0.0054 19.2 6.6 67 45-121 14-81 (91)
315 PRK11118 putative monooxygenas 23.6 1.4E+02 0.0031 20.8 3.6 29 87-115 48-76 (100)
316 PRK08453 fliD flagellar cappin 23.6 3E+02 0.0065 25.6 6.7 36 107-142 621-656 (673)
317 KOG2706 Predicted membrane pro 23.6 32 0.0007 29.1 0.5 33 64-96 12-44 (476)
318 PF12841 YvrJ: YvrJ protein fa 23.5 95 0.0021 17.7 2.3 15 106-120 21-35 (38)
319 TIGR02166 dmsA_ynfE anaerobic 23.5 99 0.0021 28.6 3.7 27 89-115 116-142 (797)
320 COG1579 Zn-ribbon protein, pos 23.5 3.7E+02 0.0081 21.6 6.5 51 97-147 107-157 (239)
321 PF12718 Tropomyosin_1: Tropom 23.5 2.8E+02 0.0061 20.2 5.4 32 16-47 39-70 (143)
322 PF08549 SWI-SNF_Ssr4: Fungal 23.2 2.6E+02 0.0056 26.0 6.1 74 65-139 326-403 (669)
323 TIGR01070 mutS1 DNA mismatch r 23.1 4.9E+02 0.011 24.7 8.1 8 70-77 456-463 (840)
324 PF10234 Cluap1: Clusterin-ass 23.0 3.3E+02 0.0071 22.3 6.2 50 95-144 157-206 (267)
325 TIGR02383 Hfq RNA chaperone Hf 22.9 1.2E+02 0.0025 19.2 2.9 31 60-90 14-44 (61)
326 PRK14990 anaerobic dimethyl su 22.9 1E+02 0.0022 28.6 3.7 27 89-115 131-157 (814)
327 cd04781 HTH_MerR-like_sg6 Heli 22.7 2.7E+02 0.0058 19.3 6.4 37 96-132 57-99 (120)
328 PRK00116 ruvA Holliday junctio 22.6 1.7E+02 0.0036 22.3 4.3 27 73-99 4-33 (192)
329 PTZ00053 methionine aminopepti 22.6 2.7E+02 0.0059 24.6 6.0 38 61-98 210-257 (470)
330 CHL00154 rpl29 ribosomal prote 22.6 2.2E+02 0.0047 18.2 5.1 32 1-32 1-32 (67)
331 TIGR02054 MerD mercuric resist 22.5 2.9E+02 0.0062 19.5 7.5 49 96-144 61-113 (120)
332 PF10481 CENP-F_N: Cenp-F N-te 22.5 2.2E+02 0.0047 23.7 5.0 36 107-142 18-53 (307)
333 KOG2695 WD40 repeat protein [G 22.5 55 0.0012 28.1 1.7 28 68-95 344-371 (425)
334 cd02757 MopB_Arsenate-R This C 22.5 95 0.002 27.3 3.2 26 90-115 73-98 (523)
335 PF03938 OmpH: Outer membrane 22.5 78 0.0017 22.8 2.3 65 11-76 72-145 (158)
336 PF07996 T4SS: Type IV secreti 22.5 3.3E+02 0.0072 20.2 5.9 23 33-55 26-48 (195)
337 PF13863 DUF4200: Domain of un 22.5 2.7E+02 0.0058 19.2 6.9 41 17-57 79-119 (126)
338 PF04025 DUF370: Domain of unk 22.4 42 0.00092 22.0 0.8 13 85-97 1-13 (73)
339 PRK03918 chromosome segregatio 22.3 6.3E+02 0.014 23.4 13.2 30 103-132 455-484 (880)
340 KOG1118 Lysophosphatidic acid 22.3 2.5E+02 0.0054 23.8 5.4 83 7-89 197-284 (366)
341 cd07591 BAR_Rvs161p The Bin/Am 22.2 3.2E+02 0.007 21.4 5.9 42 93-134 4-45 (224)
342 PF02183 HALZ: Homeobox associ 22.2 1.8E+02 0.0039 17.0 4.7 30 105-134 10-39 (45)
343 TIGR01730 RND_mfp RND family e 22.1 4E+02 0.0086 21.0 7.5 40 61-100 134-179 (322)
344 PF09304 Cortex-I_coil: Cortex 22.0 2.9E+02 0.0064 19.5 6.1 33 16-48 41-73 (107)
345 PF11365 DUF3166: Protein of u 22.0 2.8E+02 0.006 19.1 5.8 36 104-139 5-40 (96)
346 PF10596 U6-snRNA_bdg: U6-snRN 22.0 63 0.0014 24.4 1.7 45 61-106 109-153 (160)
347 PRK15488 thiosulfate reductase 22.0 1.1E+02 0.0024 28.1 3.7 27 89-115 110-136 (759)
348 cd04514 Taspase1_like Taspase1 21.9 2E+02 0.0044 23.9 4.9 25 83-107 2-26 (303)
349 PF07240 Turandot: Stress-indu 21.8 22 0.00047 24.1 -0.7 47 13-59 11-57 (85)
350 PF01591 6PF2K: 6-phosphofruct 21.8 63 0.0014 25.5 1.8 50 71-120 125-179 (222)
351 PF08702 Fib_alpha: Fibrinogen 21.8 3.3E+02 0.0072 20.0 7.0 45 99-143 28-72 (146)
352 PRK08453 fliD flagellar cappin 21.8 1.8E+02 0.0039 27.0 4.9 48 99-146 620-667 (673)
353 smart00338 BRLZ basic region l 21.7 2.1E+02 0.0045 17.6 6.2 28 111-138 30-57 (65)
354 cd01110 HTH_SoxR Helix-Turn-He 21.6 3.1E+02 0.0068 19.7 6.9 42 96-137 58-110 (139)
355 PF05008 V-SNARE: Vesicle tran 21.6 2.2E+02 0.0048 17.9 4.7 33 16-48 36-69 (79)
356 KOG3654 Uncharacterized CH dom 21.6 4.6E+02 0.0099 23.9 7.1 35 88-122 373-407 (708)
357 PF10828 DUF2570: Protein of u 21.5 2.2E+02 0.0049 19.6 4.4 47 87-134 13-59 (110)
358 PF05529 Bap31: B-cell recepto 21.4 3.6E+02 0.0078 20.2 6.1 35 99-133 153-187 (192)
359 PRK14600 ruvA Holliday junctio 21.4 1.9E+02 0.0041 22.1 4.3 30 72-101 3-35 (186)
360 TIGR03185 DNA_S_dndD DNA sulfu 21.3 6.2E+02 0.013 22.9 12.9 43 97-139 425-467 (650)
361 PF09730 BicD: Microtubule-ass 21.2 4E+02 0.0087 25.0 7.0 123 9-142 580-703 (717)
362 PF06305 DUF1049: Protein of u 21.2 1.2E+02 0.0026 18.6 2.7 21 105-125 46-66 (68)
363 KOG1592 Asparaginase [Amino ac 21.0 1.7E+02 0.0037 24.6 4.2 32 83-114 5-36 (326)
364 TIGR02449 conserved hypothetic 21.0 2.4E+02 0.0052 18.0 6.4 32 14-45 9-40 (65)
365 KOG2826 Actin-related protein 21.0 1.8E+02 0.004 23.7 4.2 30 80-109 51-80 (301)
366 PF08581 Tup_N: Tup N-terminal 20.9 2.6E+02 0.0056 18.4 6.0 30 17-46 2-31 (79)
367 PRK12765 flagellar capping pro 20.9 2.5E+02 0.0055 25.5 5.7 36 105-140 530-565 (595)
368 PRK03578 hscB co-chaperone Hsc 20.9 2.9E+02 0.0062 20.9 5.2 7 45-51 147-153 (176)
369 PRK10476 multidrug resistance 20.8 4.7E+02 0.01 21.4 7.0 10 71-80 244-253 (346)
370 cd04454 S1_Rrp4_like S1_Rrp4_l 20.8 1.6E+02 0.0035 18.6 3.4 33 69-101 5-39 (82)
371 PF02410 Oligomerisation: Olig 20.8 95 0.0021 21.0 2.3 27 79-106 69-95 (100)
372 COG4013 Uncharacterized protei 20.7 1.4E+02 0.003 20.3 3.0 43 45-88 7-50 (91)
373 KOG3335 Predicted coiled-coil 20.7 4E+02 0.0087 20.5 6.4 58 82-139 75-138 (181)
374 cd05166 PI3Kc_II Phosphoinosit 20.7 3.4E+02 0.0073 23.0 6.1 23 62-84 47-69 (353)
375 COG1766 fliF Flagellar basal b 20.6 3.1E+02 0.0067 24.8 6.0 68 34-105 129-197 (545)
376 PF11471 Sugarporin_N: Maltopo 20.6 2.3E+02 0.005 17.7 4.6 27 105-131 30-56 (60)
377 PF09738 DUF2051: Double stran 20.5 5E+02 0.011 21.6 8.8 28 105-132 217-244 (302)
378 PF04065 Not3: Not1 N-terminal 20.5 2.1E+02 0.0046 22.8 4.6 35 94-128 116-150 (233)
379 PRK13182 racA polar chromosome 20.5 3.9E+02 0.0084 20.3 6.0 28 107-134 85-112 (175)
380 PRK06718 precorrin-2 dehydroge 20.4 3.9E+02 0.0086 20.3 7.3 56 70-130 106-162 (202)
381 PRK09939 putative oxidoreducta 20.4 92 0.002 29.1 2.8 25 89-113 118-142 (759)
382 KOG3448 Predicted snRNP core p 20.3 1.1E+02 0.0024 20.9 2.5 22 61-82 12-33 (96)
383 cd07909 YciF YciF bacterial st 20.3 1.1E+02 0.0024 22.5 2.8 52 87-139 7-58 (147)
384 TIGR02544 III_secr_YscJ type I 20.3 4E+02 0.0088 20.4 6.2 60 32-95 99-159 (193)
385 PF10168 Nup88: Nuclear pore c 20.3 3.4E+02 0.0073 25.4 6.4 36 98-133 556-591 (717)
386 PF08123 DOT1: Histone methyla 20.2 56 0.0012 25.4 1.2 12 81-92 42-53 (205)
387 cd04790 HTH_Cfa-like_unk Helix 20.1 2.9E+02 0.0062 20.6 5.1 34 99-132 73-106 (172)
388 PF05149 Flagellar_rod: Parafl 20.1 2E+02 0.0043 23.9 4.4 52 95-146 200-251 (289)
No 1
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-41 Score=243.96 Aligned_cols=142 Identities=46% Similarity=0.722 Sum_probs=138.4
Q ss_pred CCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEc
Q 031977 1 MAS-SKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLD 79 (150)
Q Consensus 1 m~~-~~~i~l~~l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~ 79 (150)
|++ ++.|||+.|||+||.++++++++|++.|+.++++|..+..+|.+|+++|+.+...++|+++||||++++||||++.
T Consensus 1 ma~~s~~idltkLsleQL~~lk~q~dqEl~~lq~Sl~~L~~aq~k~~~~~~aln~~~~~~eGk~~LVPLTsSlYVPGkl~ 80 (153)
T KOG3048|consen 1 MAEESKGIDLTKLSLEQLGALKKQFDQELNFLQDSLNALKGAQTKYEESIAALNDVQAANEGKKLLVPLTSSLYVPGKLS 80 (153)
T ss_pred CCCcccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCeEEEecccceeccceec
Confidence 665 7889999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred CCCeEEEEccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 80 DARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLK 142 (150)
Q Consensus 80 ~~~~VlV~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~ 142 (150)
|.++++||||+|||||+|.++|++||+||+++|.+++++++..+.++......+.++++.|.+
T Consensus 81 d~~k~lVDIGTGYyVEK~~e~akdyfkRKve~l~kq~e~i~~i~~eK~~~~~~v~~v~q~Kv~ 143 (153)
T KOG3048|consen 81 DNSKFLVDIGTGYYVEKDAEDAKDYFKRKVEYLTKQIEQIEGILKEKTRTRASVMDVLQAKVQ 143 (153)
T ss_pred cccceeEeccCceEEeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999984
No 2
>PRK14011 prefoldin subunit alpha; Provisional
Probab=100.00 E-value=8.3e-34 Score=209.79 Aligned_cols=129 Identities=15% Similarity=0.237 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCcee
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYF 93 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~ 93 (150)
++++....+.+.++++.|++++..|+.++.+|..|+++|+.++. +.++|||||+|+||||+|.|+++|+|+||+|||
T Consensus 5 lq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~---~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~ 81 (144)
T PRK14011 5 LQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKT---SEEILIPLGPGAFLKAKIVDPDKAILGVGSDIY 81 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---CCeEEEEcCCCcEEeEEecCCCeEEEEccCCeE
Confidence 67788888999999999999999999999999999999998763 689999999999999999999999999999999
Q ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 031977 94 VEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLA 145 (150)
Q Consensus 94 vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~ 145 (150)
||+|.++|++||+||+++|++..+++...+.+++..+..+...++.++++++
T Consensus 82 VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~~ 133 (144)
T PRK14011 82 LEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQAIE 133 (144)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988763
No 3
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=100.00 E-value=4.5e-32 Score=196.13 Aligned_cols=125 Identities=30% Similarity=0.462 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCcee
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYF 93 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~ 93 (150)
+++|.+.+++++++++.|++++..|+..+.+|..++++|+.++.. .+.++|||||+|+||+|+|+++++|+||||+|||
T Consensus 1 ~qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~-~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~ 79 (126)
T TIGR00293 1 LQQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGA-EGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYY 79 (126)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEE
Confidence 478999999999999999999999999999999999999999864 6789999999999999999999999999999999
Q ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 94 VEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQA 139 (150)
Q Consensus 94 vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~ 139 (150)
||+|+++|++||++|++.+++.++++.+.+.+++.+++.+.+.+++
T Consensus 80 vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~~ 125 (126)
T TIGR00293 80 VEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQQ 125 (126)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999875
No 4
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-31 Score=196.76 Aligned_cols=135 Identities=25% Similarity=0.416 Sum_probs=128.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEcc
Q 031977 10 EKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIG 89 (150)
Q Consensus 10 ~~l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG 89 (150)
+..++++|.+.++.++.+++.|++++..|+.++.++..|+++|+.++...+|.++|||+|+|+|++|++.++++|+|+||
T Consensus 4 ~~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iG 83 (145)
T COG1730 4 TQQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIG 83 (145)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcC
Confidence 46789999999999999999999999999999999999999999998655588999999999999999999999999999
Q ss_pred CceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 90 TGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQL 144 (150)
Q Consensus 90 ~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~ 144 (150)
+|||||+|+++|++||++|++.|++.+.++++.|.++...+..+.+.+++..+..
T Consensus 84 sg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 84 SGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred CceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998876644
No 5
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=99.98 E-value=6.3e-31 Score=190.82 Aligned_cols=128 Identities=33% Similarity=0.489 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCcee
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYF 93 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~ 93 (150)
+++|...+++++.+++.+++++..|+..+.+|..++++|+.+++.+.+.++|||||+|+|++|+|+++++|+||||+|||
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~ 80 (129)
T cd00584 1 LEQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYY 80 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEE
Confidence 47899999999999999999999999999999999999999986556899999999999999999999999999999999
Q ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 94 VEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKL 141 (150)
Q Consensus 94 vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~ 141 (150)
||+|+++|++||++|++.+++.++++.+.+..++++++.+...+++++
T Consensus 81 vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~~ 128 (129)
T cd00584 81 VEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQELQ 128 (129)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999998764
No 6
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=99.98 E-value=1.8e-30 Score=191.06 Aligned_cols=134 Identities=26% Similarity=0.423 Sum_probs=127.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCc
Q 031977 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTG 91 (150)
Q Consensus 12 l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g 91 (150)
-.+++|...+++++++++.|+.++..|...+.++..++++|+.|++...+.+++||||+|+|++|+|+++++|+||||+|
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g 85 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGAG 85 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCCC
Confidence 35789999999999999999999999999999999999999999865568999999999999999999999999999999
Q ss_pred eeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 031977 92 YFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLA 145 (150)
Q Consensus 92 ~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~ 145 (150)
||||+|+++|++||++|++.+++.++.+.+.+.+++.+++.+...+++..++.+
T Consensus 86 ~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~ 139 (140)
T PRK03947 86 YSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEAA 139 (140)
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999998776543
No 7
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=99.97 E-value=4.4e-30 Score=183.66 Aligned_cols=119 Identities=26% Similarity=0.505 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceeeecCHHHHHHH
Q 031977 25 DLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDY 104 (150)
Q Consensus 25 ~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE~~~~eA~~~ 104 (150)
+++++.+++++..|+..+.+|..++++|+.|+..+.+.++|||+|+|+||||+|+++++|+|+||+|||||+|+++|++|
T Consensus 2 ~~~l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~~ 81 (120)
T PF02996_consen 2 QEELENLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIEF 81 (120)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHHH
Confidence 34567899999999999999999999999998656789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031977 105 CERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQ 143 (150)
Q Consensus 105 l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~ 143 (150)
+++|++.+++.++++.+.+.+++.+++.+...|++.+++
T Consensus 82 l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 120 (120)
T PF02996_consen 82 LKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQQ 120 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999998764
No 8
>PRK01203 prefoldin subunit alpha; Provisional
Probab=99.97 E-value=1.7e-28 Score=177.93 Aligned_cols=119 Identities=12% Similarity=0.290 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceee
Q 031977 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFV 94 (150)
Q Consensus 15 ~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~v 94 (150)
+++....+.++++++.|+++++.|+.++.+|.+|+++|+.++. +++.++|||||+|+||||+|.|+++|+|+||+||||
T Consensus 3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~-~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~V 81 (130)
T PRK01203 3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNEL-DNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYI 81 (130)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-CCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEE
Confidence 5677888889999999999999999999999999999999763 457899999999999999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 95 EKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAA 134 (150)
Q Consensus 95 E~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~ 134 (150)
|+|.+++++|++++++.|++.+......+..+..++..+.
T Consensus 82 EK~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 82 AEERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888888888888888888888888888777766
No 9
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=99.96 E-value=5.5e-28 Score=174.35 Aligned_cols=128 Identities=28% Similarity=0.449 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCcee
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYF 93 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~ 93 (150)
+++|...+++++++++.|++++..|...+.+|..+++.|+.+.....+.++++|+|+++|+||+|+++++|+|+||+|||
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ 80 (129)
T cd00890 1 LQELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVY 80 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEE
Confidence 47899999999999999999999999999999999999999987667789999999999999999999999999999999
Q ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 94 VEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKL 141 (150)
Q Consensus 94 vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~ 141 (150)
||+|.++|.+|+++|++.+++.++++.+.+..+..+++.+...|++++
T Consensus 81 ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~ 128 (129)
T cd00890 81 VEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQ 128 (129)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999998764
No 10
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=5.5e-16 Score=116.63 Aligned_cols=122 Identities=13% Similarity=0.173 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---CCCceEEEecCCceeEeEEEcCCCeEEEEccCc
Q 031977 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLR---PQGAKMLVPLTASLYVPGTLDDARKVLVDIGTG 91 (150)
Q Consensus 15 ~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~---~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g 91 (150)
.-+...+.+..---..+.++...|...+++++.+++.+..|... +++.++.+-|..|+|.+|.|+++++|++|+|++
T Consensus 40 ~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~~~s~~t~f~lsd~vy~ka~V~~~~kV~LWLGAn 119 (187)
T KOG3313|consen 40 KKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDEGESFETTFLLSDGVYTKASVPPTDKVYLWLGAN 119 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCcccCcceeEEEEecccceeeeecCCcCeEEEEecce
Confidence 33334444444444567788899999999999999999998643 244799999999999999999999999999999
Q ss_pred eeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 92 YFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVI 136 (150)
Q Consensus 92 ~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~ 136 (150)
+++|++++||.++|++++..+.++++.+.+++..++.++++++--
T Consensus 120 VMlEY~leEAeaLLkknl~sa~k~l~~~~~DldfLrdQvTTtEVN 164 (187)
T KOG3313|consen 120 VMLEYDLEEAEALLKKNLTSAVKSLDVLEEDLDFLRDQVTTTEVN 164 (187)
T ss_pred eEEEecHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhceeeeee
Confidence 999999999999999999999999999999999999999987543
No 11
>KOG3047 consensus Predicted transcriptional regulator UXT [Transcription]
Probab=99.58 E-value=7.7e-14 Score=100.58 Aligned_cols=115 Identities=15% Similarity=0.263 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCceEEEecCCceeEeEEEcCCCeEEEEccCceeeecCHHHHHHHH
Q 031977 27 EVNLLQDSLNNIRTATSRLESASTALHDLSL-RPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYC 105 (150)
Q Consensus 27 e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~-~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE~~~~eA~~~l 105 (150)
.+..-......++....+|...+-+++.|.. ..+..+.-++||+++|+...++|+++|+|.+|.|||+|+++.+|++|+
T Consensus 31 di~k~~d~~dKl~eQ~aeY~kLk~t~eRL~eaahkel~~ktdLGcnfFmdi~VpDTk~i~VaL~~~fflElkLadAiKf~ 110 (157)
T KOG3047|consen 31 DIAKEEDEFDKLQEQCAEYAKLKFTCERLLEAAHKELEGKTDLGCNFFMDIEVPDTKHIVVALCDDFFLELKLADAIKFC 110 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccccceeeEeeecCCcceEEEEeecceeeeehHHHHHHHH
Confidence 3344445556667777778777777777542 234567789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 106 ERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKL 141 (150)
Q Consensus 106 ~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~ 141 (150)
+|+.+.|.+..+++++.-..++..+.++.+.++..+
T Consensus 111 DRK~dlLkel~ekLqKdsmkiKa~ihMLLagl~elq 146 (157)
T KOG3047|consen 111 DRKMDLLKELMEKLQKDSMKIKADIHMLLAGLDELQ 146 (157)
T ss_pred HHhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999999999999999999887654
No 12
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=2.7e-12 Score=107.41 Aligned_cols=109 Identities=17% Similarity=0.274 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceeeecCHHHH
Q 031977 22 EQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEG 101 (150)
Q Consensus 22 ~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE~~~~eA 101 (150)
..+.+-+..++...+.++.--..|...++.+..+++ +.+.+||||+|.-.|+||++.++|.|+|.+|.|||.++|...|
T Consensus 6 ~e~~~a~~~~~~ete~~~~v~~dye~~~erl~~~~k-kLs~~Imvpig~~a~mpG~lVhTNevtv~~g~nyf~~CS~h~A 84 (514)
T KOG3130|consen 6 AECNAAKARLEVETECRKKVDNDYEALRERLSTLPK-KLSYNIMVPIGPFAFMPGKLVHTNEVTVLLGDNYFAKCSAHQA 84 (514)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHhhh-hcccceeeecccccccccceeeechhhhhhccchHhhhhHHHH
Confidence 334445566777778888889999999999999985 6789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 102 KDYCERKINLLKSNFDQLIEVATKKKTISD 131 (150)
Q Consensus 102 ~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~ 131 (150)
.+++++|++.++++++++...+.-.-.+++
T Consensus 85 ~~I~~~R~~~~r~q~~~l~~~~~n~~~~vk 114 (514)
T KOG3130|consen 85 VGIVEHRKEHVRKQIDDLKKVMKNFESRVK 114 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Confidence 999999999999999999777766555544
No 13
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=99.12 E-value=2e-09 Score=76.20 Aligned_cols=107 Identities=14% Similarity=0.116 Sum_probs=98.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCc
Q 031977 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTG 91 (150)
Q Consensus 12 l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g 91 (150)
..++++..-+++++++++.+..++..|...+.++..+++.|+.|++ +..++-++|+
T Consensus 3 ~~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~---d~~vyk~VG~--------------------- 58 (110)
T TIGR02338 3 PQVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPD---DTPVYKSVGN--------------------- 58 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---cchhHHHhch---------------------
Confidence 3467888889999999999999999999999999999999999974 5677788877
Q ss_pred eeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 92 YFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLK 142 (150)
Q Consensus 92 ~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~ 142 (150)
+||+.|.++|+..+++|++.++..++.+.+.+..++..+..+...|+..+.
T Consensus 59 vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~~ 109 (110)
T TIGR02338 59 LLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEALA 109 (110)
T ss_pred hhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999987763
No 14
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=98.96 E-value=1.7e-08 Score=70.84 Aligned_cols=102 Identities=11% Similarity=0.101 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceee
Q 031977 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFV 94 (150)
Q Consensus 15 ~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~v 94 (150)
+++..-++.++++++.+..++..|...+.++..+.+.|..+++ +..++.++|+ +||
T Consensus 2 q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~---d~~vy~~VG~---------------------vfv 57 (105)
T cd00632 2 QEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLAD---DAEVYKLVGN---------------------VLV 57 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---cchHHHHhhh---------------------HHh
Confidence 4567778888899999999999999999999999999999874 5577777777 999
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 95 EKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAK 140 (150)
Q Consensus 95 E~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~ 140 (150)
++|.++|...++.|++.++..++.+.+.+..+..++..+...|+..
T Consensus 58 ~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 58 KQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888753
No 15
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=98.58 E-value=3.7e-06 Score=58.20 Aligned_cols=103 Identities=16% Similarity=0.197 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceee
Q 031977 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFV 94 (150)
Q Consensus 15 ~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~v 94 (150)
+++..-.+.+..++..+..++..+.....++..+.+.|+.+++ +..++..+| ++||
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~---~~~~y~~vG---------------------~~fv 56 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDD---DRKVYKSVG---------------------KMFV 56 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST---T-EEEEEET---------------------TEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---cchhHHHHh---------------------HHHH
Confidence 3455666777788888999999999999999999999988864 334444444 4599
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 95 EKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKL 141 (150)
Q Consensus 95 E~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~ 141 (150)
+.|.+++.+.++.+++.++..++++...+..+...+..+...+..++
T Consensus 57 ~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~ 103 (106)
T PF01920_consen 57 KQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYELF 103 (106)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988876543
No 16
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=98.58 E-value=1.1e-06 Score=63.01 Aligned_cols=107 Identities=21% Similarity=0.304 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-------------CCCceEEEecCCceeEeEEEcC
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLR-------------PQGAKMLVPLTASLYVPGTLDD 80 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~-------------~~~~eilvplg~~~yv~g~i~~ 80 (150)
.++|....+.+.+.+..+...+..+......+....++....... .++.+++|++|.|+||...+.+
T Consensus 8 ~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve~~~~e 87 (129)
T cd00890 8 LQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVEKSLEE 87 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEEecHHH
Confidence 466777777788888888888888888877777666554442210 1467899999999999999887
Q ss_pred CCeEEEEccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 81 ARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEA 133 (150)
Q Consensus 81 ~~~VlV~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v 133 (150)
. ...+++.+++++++++.+++.+..+...+..+...+..+
T Consensus 88 A-------------~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 88 A-------------IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred H-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6 578999999999999999999999999999999988765
No 17
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=98.52 E-value=1.4e-06 Score=62.71 Aligned_cols=111 Identities=21% Similarity=0.316 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceeeecCHHHH
Q 031977 22 EQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEG 101 (150)
Q Consensus 22 ~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE~~~~eA 101 (150)
+++.++.+.++++++.|...+..+..++..++... +++ -++++. +...++|++|+|+||+-++++.
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~------~~L------~~l~~~--~~~~~lv~lg~~~~v~~~v~~~ 67 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETAI------ETL------EDLKGA--EGKETLVPVGAGSFVKAKVKDT 67 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH------Hhcccc--CCCeEEEEcCCCeEEEEEeCCC
Confidence 46677788899999999999999998888777753 222 222333 5678999999999999999988
Q ss_pred H-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 031977 102 K-------------DYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLAP 146 (150)
Q Consensus 102 ~-------------~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~~ 146 (150)
. .-++.-++++++.++.+.+.+..+...+..+.+.+..-...+++
T Consensus 68 ~~v~v~iG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~~ 125 (126)
T TIGR00293 68 DKVLVSIGSGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQQ 125 (126)
T ss_pred CEEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7 67799999999999999999999999999999999887766553
No 18
>PRK09343 prefoldin subunit beta; Provisional
Probab=98.32 E-value=3.2e-05 Score=55.69 Aligned_cols=109 Identities=16% Similarity=0.144 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCcee
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYF 93 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~ 93 (150)
++++..-.+.++++++.+..+...+.....+...+++-|+.|++ +.. |+-.|| .+|
T Consensus 9 ~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~---d~~--------------------VYk~VG-~vl 64 (121)
T PRK09343 9 VQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPD---DTP--------------------IYKIVG-NLL 64 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---cch--------------------hHHHhh-HHH
Confidence 56777778888899999999999999999999999988888864 223 333444 377
Q ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 031977 94 VEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLAP 146 (150)
Q Consensus 94 vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~~ 146 (150)
|..|.++|+.-++.|+++++..+..+.+....++..+..+...|+..+++.-+
T Consensus 65 v~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~ 117 (121)
T PRK09343 65 VKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYYP 117 (121)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88899999999999999999999999999999999999999999998876544
No 19
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=98.30 E-value=1.5e-05 Score=58.30 Aligned_cols=116 Identities=17% Similarity=0.275 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCce
Q 031977 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGY 92 (150)
Q Consensus 13 ~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~ 92 (150)
+-++|..+..++ +.++..++.|...+..+...+..+..... ..+ ++++. .+..+++|+||+|+
T Consensus 4 ~~~~l~~l~~~~----~~l~~~~~~l~~~~~~l~~~~~e~~~~~e---~l~---------~l~~~-~~~~e~lvplg~~~ 66 (140)
T PRK03947 4 SEQELEELAAQL----QALQAQIEALQQQLEELQASINELDTAKE---TLE---------ELKSK-GEGKETLVPIGAGS 66 (140)
T ss_pred cHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH---------hhccc-CCCCeEEEEcCCCc
Confidence 344555555555 55888888888888888877766655431 111 22332 25689999999999
Q ss_pred eeecCHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 031977 93 FVEKTMDEGKD-------------YCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLA 145 (150)
Q Consensus 93 ~vE~~~~eA~~-------------~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~ 145 (150)
||+.++++..+ .++.-++++++.++.+...+..+...+..+...++.....++
T Consensus 67 yv~~~v~~~~kV~v~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~ 132 (140)
T PRK03947 67 FVKAKVKDKDKVIVSLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQ 132 (140)
T ss_pred EEEEEecCCCeEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999976655 779999999999999999999999999999998887766544
No 20
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=98.29 E-value=2e-05 Score=56.85 Aligned_cols=107 Identities=21% Similarity=0.279 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhccCC-------CCCceEEEecCCceeEeEEEcC
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAST------ALHDLSLR-------PQGAKMLVPLTASLYVPGTLDD 80 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e------~l~~L~~~-------~~~~eilvplg~~~yv~g~i~~ 80 (150)
+++|....+.+.++++.++..+..+...+..+..... ++-.+..+ ....+++||+|+|+||...+.+
T Consensus 8 ~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE~~~~e 87 (129)
T cd00584 8 LQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVEKDLEE 87 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEEecHHH
Confidence 4667777778888888899888888877777665543 11111110 2357899999999999999987
Q ss_pred CCeEEEEccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 81 ARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEA 133 (150)
Q Consensus 81 ~~~VlV~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v 133 (150)
.. ..++.-++.++++++.+++.+.++...+..+...+..+
T Consensus 88 A~-------------~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~ 127 (129)
T cd00584 88 AI-------------EFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQEL 127 (129)
T ss_pred HH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55 67899999999999999999999999999999888764
No 21
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=7.6e-05 Score=53.60 Aligned_cols=108 Identities=19% Similarity=0.185 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCcee
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYF 93 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~ 93 (150)
.+++..-.++++++++.+-.+..++...+.+...+++-|+.+.. +. .|+=.+| ++|
T Consensus 8 ~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~e---D~--------------------~vYk~VG-~ll 63 (119)
T COG1382 8 VQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDE---DA--------------------PVYKKVG-NLL 63 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---cc--------------------HHHHHhh-hHH
Confidence 45666677888888999999999999999998888888888764 21 2333344 578
Q ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 031977 94 VEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLA 145 (150)
Q Consensus 94 vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~ 145 (150)
|..+.++|.+=++.|++.++..++.+++....++.++..+.+.|+.++....
T Consensus 64 vk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~~ 115 (119)
T COG1382 64 VKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGDAA 115 (119)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 8889999999999999999999999999999999999999999999886543
No 22
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=3.1e-05 Score=57.48 Aligned_cols=111 Identities=19% Similarity=0.305 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceeeecCHHH
Q 031977 21 KEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDE 100 (150)
Q Consensus 21 ~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE~~~~e 100 (150)
.+++.++++.|+.+++.|+..+..+..++..+..... ..+.+--.+. ...++|++|+|.||.-.+..
T Consensus 8 le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~---tl~~lk~~~~----------g~E~LVpvGag~fv~~kv~~ 74 (145)
T COG1730 8 LEELAAQLQILQSQIESLQAQIAALNAAISELQTAIE---TLENLKGAGE----------GKEVLVPVGAGLFVKAKVKD 74 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCC----------CceEEEEcCCCceEEEEecc
Confidence 3455555566777777777777777666555544221 1111111111 22677777777777776666
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 101 -------------GKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQL 144 (150)
Q Consensus 101 -------------A~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~ 144 (150)
|..-++.=+++|++.++++.+.+..++..+..+.+.+++..+..
T Consensus 75 ~~kviV~iGsg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~ 131 (145)
T COG1730 75 MDKVIVSIGSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEA 131 (145)
T ss_pred CceEEEEcCCceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777777777777777777777777777777666655443
No 23
>PRK01203 prefoldin subunit alpha; Provisional
Probab=98.03 E-value=0.00015 Score=52.98 Aligned_cols=102 Identities=21% Similarity=0.384 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----ccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceeeecC
Q 031977 22 EQTDLEVNLLQDSLNNIRTATSRLESASTALHD----LSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKT 97 (150)
Q Consensus 22 ~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~----L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE~~ 97 (150)
+.+.++++.++++++.|+..+..+..+..-+.. |.. ..-.+.+.|+|+||+|.||-=.
T Consensus 3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~------------------~~~~~~~eiLVPLg~slYV~gk 64 (130)
T PRK01203 3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSD------------------NELDNSKELLISIGSGIFADGN 64 (130)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------------------cccCCCCeEEEEccCCceEeEE
Confidence 356788899999999999999888876554433 321 1123568999999999999988
Q ss_pred HHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 98 MDEGKD-------------YCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKL 141 (150)
Q Consensus 98 ~~eA~~-------------~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~ 141 (150)
+.+..+ -++++++++++++++++..+..+++.+..+...+....
T Consensus 65 i~d~~kVlVdIGTGy~VEK~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 65 IKKDKDLIVPIGSGVYIAEERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred ecCCCeEEEEcCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877665 35789999999999999999999999999999988775
No 24
>PRK14011 prefoldin subunit alpha; Provisional
Probab=97.71 E-value=0.00084 Score=49.83 Aligned_cols=117 Identities=10% Similarity=0.119 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-C---------CCCceEEEecCCceeEeEEEcCCCe
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSL-R---------PQGAKMLVPLTASLYVPGTLDDARK 83 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~-~---------~~~~eilvplg~~~yv~g~i~~~~~ 83 (150)
++.+.+..+.|.+.++.|+.....+..++..+......-+.|=| + .+..+++|++|.|+||.=.+.+.-
T Consensus 12 l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~VEk~~~eA~- 90 (144)
T PRK14011 12 LEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYLEKDVSEVI- 90 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEEEecHHHHH-
Confidence 45666666667777777777777777766666533222122211 1 234578888888888877766532
Q ss_pred EEEEccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031977 84 VLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQ 143 (150)
Q Consensus 84 VlV~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~ 143 (150)
..++.=++++++..+.+.+.++++.+.+..+...+..-...++++.++
T Consensus 91 ------------~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~~~~~~~ 138 (144)
T PRK14011 91 ------------EDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQAIEQRQAQ 138 (144)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 234566777778888888888888888777777766665555544443
No 25
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=97.54 E-value=7.4e-05 Score=51.96 Aligned_cols=94 Identities=17% Similarity=0.233 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC-CCCCceEEEecCCceeEeEEEcCCCeEEEEccCceeeecCHHHHHHHHHHHHHHH
Q 031977 34 SLNNIRTATSRLESASTALHDLSL-RPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLL 112 (150)
Q Consensus 34 ~~~~L~~~~~e~~~~~e~l~~L~~-~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE~~~~eA~~~l~rr~~~l 112 (150)
++..++.--.+|+..++-|..|+. .+...+=+.-++.++ .|++.+.+.|=.-+|.|-.+.+|.++++++++||++.+
T Consensus 3 sL~hWq~w~aEYe~LKEEi~~l~~~~~~~~e~l~~i~r~f--~g~lv~~kEi~~ilG~~~~i~Rt~~Qvv~~l~RRiDYV 80 (99)
T PF13758_consen 3 SLYHWQTWEAEYEGLKEEIEALPEDDDATREDLLRIRRDF--GGSLVTEKEIKEILGEGQGITRTREQVVDVLSRRIDYV 80 (99)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHhc--CcccccHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 456666777788888888888863 222334455555543 58888888888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031977 113 KSNFDQLIEVATKKKTI 129 (150)
Q Consensus 113 ~~~~~~l~~~l~~~~~~ 129 (150)
++++..+++.+..-...
T Consensus 81 ~~Ni~tleKql~~aE~k 97 (99)
T PF13758_consen 81 QQNIETLEKQLEAAENK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999998776544
No 26
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0029 Score=46.06 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=84.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCc
Q 031977 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTG 91 (150)
Q Consensus 12 l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g 91 (150)
.+-+.+..-++++..+++.|.+.+..|.....++.-.+++|+.+.+ +..++= .=.|
T Consensus 15 ~~q~~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~dp---~RKCfR---------------------mIgG 70 (140)
T KOG4098|consen 15 SSQQAVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLDP---TRKCFR---------------------MIGG 70 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCh---hhHHHH---------------------Hhcc
Confidence 3445677788999999999999999999999999999999999865 222211 1147
Q ss_pred eeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 92 YFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAV 135 (150)
Q Consensus 92 ~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~ 135 (150)
+.||+|+.+..=.|...++.++..+..+..++.++..+++....
T Consensus 71 vLVErTVkeVlP~L~~nke~i~~~i~~l~~qL~~k~kElnkfk~ 114 (140)
T KOG4098|consen 71 VLVERTVKEVLPILQTNKENIEKVIKKLTDQLVQKGKELNKFKK 114 (140)
T ss_pred chhhhhHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999887654
No 27
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.033 Score=39.50 Aligned_cols=110 Identities=13% Similarity=0.156 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceee
Q 031977 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFV 94 (150)
Q Consensus 15 ~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~v 94 (150)
+.+..-+++|+.++...-...+.|...+.+-.-.++-++.|.+ +++|+=-+| .+.|
T Consensus 8 ee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~-----------------------d~~VYKliG-pvLv 63 (120)
T KOG3478|consen 8 EEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEE-----------------------DSNVYKLIG-PVLV 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcc-----------------------cchHHHHhc-chhh
Confidence 3444445555555555555555555555444444444444432 223333333 3667
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCc
Q 031977 95 EKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLAPAS 148 (150)
Q Consensus 95 E~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~~~~ 148 (150)
.-+.+||..-+.+|++++...+..+...+..+..+....++.+-+..++.|++.
T Consensus 64 kqel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q~~~ 117 (120)
T KOG3478|consen 64 KQELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQPAA 117 (120)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 889999999999999999999999999999999999999998887777777554
No 28
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=96.76 E-value=0.028 Score=39.50 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=51.7
Q ss_pred CCceEEEecCCceeEeEEEcCCCeEEEEccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 60 QGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAA 134 (150)
Q Consensus 60 ~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~ 134 (150)
...+++|+||+|+||.-.+.+.-+ -++.=++.+++.++.+++.+..+...+..+...+..+.
T Consensus 57 ~~~~vlV~lG~~~~vE~s~~eA~~-------------~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 118 (120)
T PF02996_consen 57 DTDKVLVSLGAGYYVEMSLEEAIE-------------FLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLY 118 (120)
T ss_dssp STTEEEEEEETTEEEEEEHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CCCEEEEEeeCCeEEEecHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999887543 35677888899999999999999999998888887764
No 29
>PRK00736 hypothetical protein; Provisional
Probab=90.73 E-value=2.6 Score=27.15 Aligned_cols=46 Identities=11% Similarity=0.076 Sum_probs=36.1
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 96 KTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKL 141 (150)
Q Consensus 96 ~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~ 141 (150)
||.++-+.-|+-|+.+.+..++.++..+..-..+|..+...++...
T Consensus 1 ~~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~ 46 (68)
T PRK00736 1 MDAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALT 46 (68)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888888888888888888888777776665443
No 30
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=87.51 E-value=1.6 Score=26.08 Aligned_cols=37 Identities=8% Similarity=0.154 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 97 TMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEA 133 (150)
Q Consensus 97 ~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v 133 (150)
+..||+++|...-+.++..++.+..+|+++.+....+
T Consensus 2 d~~EAkelLqe~~d~IEqkiedid~qIaeLe~KR~~L 38 (46)
T PF08946_consen 2 DRAEAKELLQEHYDNIEQKIEDIDEQIAELEAKRQRL 38 (46)
T ss_dssp -------------THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Confidence 4578999998888888888888888887777664433
No 31
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=87.51 E-value=22 Score=32.24 Aligned_cols=40 Identities=15% Similarity=0.281 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 031977 17 LKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLS 56 (150)
Q Consensus 17 L~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~ 56 (150)
.....+.+.+++..+.+++..|+..+.++.+.++.|+-+.
T Consensus 91 ~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~~~ 130 (646)
T PRK05771 91 VEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWG 130 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3456677778888888888888888888888888777754
No 32
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=87.49 E-value=2.1 Score=31.11 Aligned_cols=75 Identities=17% Similarity=0.195 Sum_probs=44.7
Q ss_pred CCCceEEEecCCce--eEeEEEcCCCeEEEEc-c-----CceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 59 PQGAKMLVPLTASL--YVPGTLDDARKVLVDI-G-----TGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTIS 130 (150)
Q Consensus 59 ~~~~eilvplg~~~--yv~g~i~~~~~VlV~l-G-----~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~ 130 (150)
.++..+++++++|. +||+.-. -+++- . ...|||+|..--....++=+..-++.+..+.++-..++..+
T Consensus 26 ~e~g~~~Ie~~~g~~~~v~~~~~----~~~~~~~~~~~~~~~fvEKTi~til~LheKvl~aKdETI~~lk~EN~fLKeAl 101 (126)
T PF13118_consen 26 NEDGKIYIEASSGTKALVPKAEN----ELVSMNMSSHALDPMFVEKTIGTILNLHEKVLDAKDETIEALKNENRFLKEAL 101 (126)
T ss_pred ccCCeEEEEcCcchHHHhhHHHH----HHHhhcccccccccchhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35678999999987 4443322 11111 1 12599999766666666666666666666666666665555
Q ss_pred HHHHHHH
Q 031977 131 DEAAVIL 137 (150)
Q Consensus 131 ~~v~~~i 137 (150)
-.+.+..
T Consensus 102 ~s~QE~y 108 (126)
T PF13118_consen 102 YSMQELY 108 (126)
T ss_pred HHHHHHH
Confidence 5554444
No 33
>PRK00295 hypothetical protein; Provisional
Probab=86.68 E-value=6.5 Score=25.31 Aligned_cols=47 Identities=13% Similarity=0.227 Sum_probs=35.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 96 KTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLK 142 (150)
Q Consensus 96 ~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~ 142 (150)
+|.++-+.-|+-|+.+.+..++.++..+..-..++..+...++....
T Consensus 1 ~~~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 1 MSLEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIK 47 (68)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777888888888888888888888888777777766655443
No 34
>PRK02793 phi X174 lysis protein; Provisional
Probab=84.52 E-value=8.8 Score=24.95 Aligned_cols=48 Identities=8% Similarity=0.072 Sum_probs=35.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031977 96 KTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQ 143 (150)
Q Consensus 96 ~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~ 143 (150)
.+.++-+.-|+-|+.+.+..++.+++.+..-..+|..+...++....+
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~r 51 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEK 51 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888888888888888888887777777666555443
No 35
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=84.39 E-value=2.6 Score=26.62 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=24.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 7 GGMEKMSVEQLKAIKEQTDLEVNLLQDSLNN 37 (150)
Q Consensus 7 i~l~~l~~~qL~~~~~ql~~e~~~l~~~~~~ 37 (150)
-||+.||+.+|......|+.|+..+.+.+..
T Consensus 16 ~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 16 EDLSLLSVEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred CCchhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999888888888877665543
No 36
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=83.19 E-value=9.7 Score=24.41 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQL 144 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~ 144 (150)
.++-+.-|+-|+.+.+..++.++..+..-..+|..+...++.....+
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777777777777766666555443
No 37
>PRK04406 hypothetical protein; Provisional
Probab=82.49 E-value=11 Score=24.69 Aligned_cols=46 Identities=7% Similarity=0.173 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQ 143 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~ 143 (150)
.++-+.-|+-|+.+.+..++.+++.+..-..++..+...++....+
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~r 54 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGK 54 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777778888888888877777777776666655443
No 38
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=82.01 E-value=6.8 Score=28.42 Aligned_cols=41 Identities=15% Similarity=0.218 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 97 TMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVIL 137 (150)
Q Consensus 97 ~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i 137 (150)
++..|+++|..||+.+..++++..+....++.+...+..-+
T Consensus 58 ~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv 98 (126)
T PF07889_consen 58 SLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDV 98 (126)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhH
Confidence 45678888888888888888888777777777776665444
No 39
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=80.71 E-value=19 Score=26.13 Aligned_cols=52 Identities=23% Similarity=0.268 Sum_probs=46.0
Q ss_pred ceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 91 GYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLK 142 (150)
Q Consensus 91 g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~ 142 (150)
.+|+-++.++..+.|+...+.+.+.++.+...+..+..++..+-.+|=.|..
T Consensus 72 dvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~LYaKFg 123 (131)
T KOG1760|consen 72 DVFIHVKLDKLQDQLEEKKETLEKEIEELESELESISARMDELKKVLYAKFG 123 (131)
T ss_pred hhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4778889999999999999999999999999999999999999888876654
No 40
>PRK04325 hypothetical protein; Provisional
Probab=80.67 E-value=13 Score=24.25 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAK 140 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~ 140 (150)
.++-+.-|+-|+.+.+..++.|+..+..-..++..+...++..
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777888888888888888877777777666555444
No 41
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=80.12 E-value=20 Score=28.89 Aligned_cols=114 Identities=11% Similarity=0.121 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---CCCceEEEecCCceeE----eEEEcCCCeEEEEccCceee
Q 031977 22 EQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLR---PQGAKMLVPLTASLYV----PGTLDDARKVLVDIGTGYFV 94 (150)
Q Consensus 22 ~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~---~~~~eilvplg~~~yv----~g~i~~~~~VlV~lG~g~~v 94 (150)
++++.++..+.+.+...+..+.+++.-+..+..-... ..+.-.+...+...+- .|.+.+++.+ +..|.+=-+
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~-~~~~~~~si 80 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSI-IGGGGDSSI 80 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccC-CCCCCcccH
Confidence 3455566667777777777777777666666643110 0011111111111111 1233333321 122222111
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 95 EKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVI 136 (150)
Q Consensus 95 E~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~ 136 (150)
=-=+-.=.+-|..|..+|++.+.+....+..++.++..+..-
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111233356677777777777777777777777777766543
No 42
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=79.62 E-value=29 Score=30.55 Aligned_cols=97 Identities=14% Similarity=0.103 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceeeecCHHHHHH
Q 031977 24 TDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKD 103 (150)
Q Consensus 24 l~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE~~~~eA~~ 103 (150)
++.++..++..+..++..+.-++..+..|+.+... ..-|++.++ .. + +--++ .+.+...
T Consensus 76 l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~-~~-------------~-~~~~~-~~~~~~~ 134 (525)
T TIGR02231 76 LRKQIRELEAELRDLEDRGDALKALAKFLEDIREG-----LTEPIKDSA-KR-------------N-EPDLK-EWFQAFD 134 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hcccccccc-cc-------------C-CCCHH-HHHHHHH
Confidence 33344446666666666666666666666665421 112233221 00 0 00000 4677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 104 YCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKL 141 (150)
Q Consensus 104 ~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~ 141 (150)
|+..++..+...+..+...+.++++++..++..+....
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 135 FNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999988888776543
No 43
>PRK02119 hypothetical protein; Provisional
Probab=77.84 E-value=17 Score=23.74 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLK 142 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~ 142 (150)
.++-+.-|+-|+.+.+..++.++..+..-..++..+...++....
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777777777777777777766666655443
No 44
>PRK09343 prefoldin subunit beta; Provisional
Probab=76.84 E-value=11 Score=26.94 Aligned_cols=100 Identities=20% Similarity=0.172 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCce
Q 031977 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGY 92 (150)
Q Consensus 13 ~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~ 92 (150)
.++++..-.+.+....+.+..++.....+..++...-+--.-++. + +.+||+-...+
T Consensus 15 ~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~----------V-G~vlv~qd~~e------------ 71 (121)
T PRK09343 15 QLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKI----------V-GNLLVKVDKTK------------ 71 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHH----------h-hHHHhhccHHH------------
Confidence 356666777777788888999999999999998876544444442 1 23666665443
Q ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 93 FVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVI 136 (150)
Q Consensus 93 ~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~ 136 (150)
+..++++-++||+.+++.++++.+.+++.+.+...++..+...
T Consensus 72 -~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 72 -VEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457899999999999999999999999999999999887654
No 45
>PRK11637 AmiB activator; Provisional
Probab=73.34 E-value=58 Score=27.86 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 101 GKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLK 142 (150)
Q Consensus 101 A~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~ 142 (150)
.+.-+++.++.++..++.++..|...+..+......+...+.
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555555555544443
No 46
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=73.22 E-value=14 Score=22.19 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 23 QTDLEVNLLQDSLNNIRTATSRLESA 48 (150)
Q Consensus 23 ql~~e~~~l~~~~~~L~~~~~e~~~~ 48 (150)
.|.++++.|+.++..|+.+...|..+
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs~yKKa 28 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFSQYKKA 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677999999999988888776
No 47
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=71.20 E-value=15 Score=25.51 Aligned_cols=97 Identities=18% Similarity=0.180 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCcee
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYF 93 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~ 93 (150)
++++..-.+.+..+++.+..++......+.++...-+.-..+..- | .++|.-+-.-
T Consensus 12 ~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~V--G-~vlv~~~~~e--------------------- 67 (110)
T TIGR02338 12 LQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSV--G-NLLVKTDKEE--------------------- 67 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHh--c-hhhheecHHH---------------------
Confidence 455566666667777778888888888888777654433333321 1 3555433110
Q ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 94 VEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAA 134 (150)
Q Consensus 94 vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~ 134 (150)
+--++++=+++++.+++.++++++.+++.+.+++.++..+.
T Consensus 68 ~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 68 AIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12245666777788888888888888888888777776553
No 48
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=71.14 E-value=50 Score=28.29 Aligned_cols=44 Identities=7% Similarity=0.195 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 11 KMSVEQLKAIKEQTD-------LEVNLLQDSLNNIRTATSRLESASTALHD 54 (150)
Q Consensus 11 ~l~~~qL~~~~~ql~-------~e~~~l~~~~~~L~~~~~e~~~~~e~l~~ 54 (150)
++...+|......++ .+...+...+..++..+..+.+-++.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 14 THTERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444444444444 44444444444454444444444444433
No 49
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=70.99 E-value=20 Score=25.75 Aligned_cols=96 Identities=20% Similarity=0.209 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceee
Q 031977 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFV 94 (150)
Q Consensus 15 ~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~v 94 (150)
++|.+-.+.+-.+.+.+..++.....+..++...-+-=.-.+. .+++||+..-+ . +
T Consensus 16 QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~-----------VG~llvk~~k~---~----------~ 71 (119)
T COG1382 16 QQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKK-----------VGNLLVKVSKE---E----------A 71 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH-----------hhhHHhhhhHH---H----------H
Confidence 3344444444456677888888888888887654322111221 12345454221 1 2
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 95 EKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAA 134 (150)
Q Consensus 95 E~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~ 134 (150)
-..+++=.++++.|++.|+++.+.+++.+.+++..+....
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3468899999999999999999999999999999887543
No 50
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=70.79 E-value=31 Score=23.85 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=21.0
Q ss_pred cCHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 96 KTMDEGKDYCE----------RKINLLKSNFDQLIEVATKKKTISDEAAV 135 (150)
Q Consensus 96 ~~~~eA~~~l~----------rr~~~l~~~~~~l~~~l~~~~~~~~~v~~ 135 (150)
+|+++..++++ .+...+.+++..+...+..++..+..+..
T Consensus 58 ~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 107 (113)
T cd01109 58 MSIKDIKEYAELRREGDSTIPERLELLEEHREELEEQIAELQETLAYLDY 107 (113)
T ss_pred CCHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666664 33444555555555555555544444433
No 51
>PRK11637 AmiB activator; Provisional
Probab=69.49 E-value=72 Score=27.31 Aligned_cols=44 Identities=14% Similarity=0.097 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKL 141 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~ 141 (150)
++..+.-+.+++..++..+..++.++..++.++......|....
T Consensus 80 l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 80 QEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555555555554443
No 52
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=68.42 E-value=28 Score=29.77 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=28.4
Q ss_pred eeeecCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 92 YFVEKTMDEGKDYCERKINLLKSNFDQLIEVA 123 (150)
Q Consensus 92 ~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l 123 (150)
++++.+.+++.+.++.++..+++.++++...+
T Consensus 234 ~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l 265 (406)
T PF02388_consen 234 FLAELNGKEYLESLQEKLEKLEKEIEKLEEKL 265 (406)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999888863
No 53
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=68.23 E-value=16 Score=25.11 Aligned_cols=96 Identities=19% Similarity=0.188 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCcee
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYF 93 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~ 93 (150)
+++|..-.+.+..+++.+..++.....+..++..+-+.-.-+..- | .++|..... -
T Consensus 8 ~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~V--G-~vfv~~~~~---------------------e 63 (105)
T cd00632 8 LQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLV--G-NVLVKQEKE---------------------E 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHh--h-hHHhhccHH---------------------H
Confidence 455566666667777777778888888877776542211111111 1 355554321 1
Q ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 94 VEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEA 133 (150)
Q Consensus 94 vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v 133 (150)
+...+++-+++++.+++.++++++.+.+.+.+++..+..+
T Consensus 64 a~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 64 ARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778888888888888888888888888888887754
No 54
>PRK00846 hypothetical protein; Provisional
Probab=67.76 E-value=33 Score=22.75 Aligned_cols=43 Identities=9% Similarity=0.168 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAK 140 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~ 140 (150)
.++-+.-|+-|+.+.+..++.++..+..-...+..+...|+..
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L 53 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL 53 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777888888888888888888777777776665543
No 55
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=67.72 E-value=29 Score=22.14 Aligned_cols=44 Identities=9% Similarity=-0.025 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKL 141 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~ 141 (150)
++....|.++-++.|++.+-..+..|..++.++..+...++..-
T Consensus 9 LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 9 LEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46677899999999999999999999999999999888887644
No 56
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=67.64 E-value=25 Score=21.87 Aligned_cols=17 Identities=12% Similarity=0.413 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031977 29 NLLQDSLNNIRTATSRL 45 (150)
Q Consensus 29 ~~l~~~~~~L~~~~~e~ 45 (150)
..+...+.+++....++
T Consensus 10 ~~~~~~i~tvk~en~~i 26 (55)
T PF05377_consen 10 PRIESSINTVKKENEEI 26 (55)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 57
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=66.90 E-value=74 Score=26.47 Aligned_cols=42 Identities=10% Similarity=0.019 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 99 DEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAK 140 (150)
Q Consensus 99 ~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~ 140 (150)
...+....+++..++.++..+...+.........+...|+..
T Consensus 217 ~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~a 258 (312)
T smart00787 217 LQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEA 258 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666666666666666666555543
No 58
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=66.84 E-value=20 Score=25.03 Aligned_cols=38 Identities=8% Similarity=0.104 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 97 TMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAA 134 (150)
Q Consensus 97 ~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~ 134 (150)
+.++..+++.++.+.+++++..++...+.+...+..+.
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~ 113 (116)
T cd04769 76 PWPHLQQALEDKKQEIRAQITELQQLLARLDAFEASLK 113 (116)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566677777777777777777766666665555544
No 59
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=65.95 E-value=76 Score=26.27 Aligned_cols=84 Identities=14% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCce
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIR-TATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGY 92 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~-~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~ 92 (150)
+++|...++.|..++..|++....+. ....++..++..|..+...
T Consensus 179 ~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~---------------------------------- 224 (325)
T PF08317_consen 179 LPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEE---------------------------------- 224 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHH----------------------------------
Q ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 93 FVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAK 140 (150)
Q Consensus 93 ~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~ 140 (150)
++-..+.+..++..+..+...+..+..+...+...|+..
T Consensus 225 ---------i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 225 ---------IEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 60
>PF14282 FlxA: FlxA-like protein
Probab=65.55 E-value=43 Score=23.24 Aligned_cols=45 Identities=9% Similarity=0.106 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH----H-------HHHHHHHHHHHHHHHHHHH
Q 031977 97 TMDEGKDYCERKINLLKSNFDQLIE----V-------ATKKKTISDEAAVILQAKL 141 (150)
Q Consensus 97 ~~~eA~~~l~rr~~~l~~~~~~l~~----~-------l~~~~~~~~~v~~~i~~~~ 141 (150)
+.+.-++-|.++|..|.+.+..|.. . +..++.+|..|...|.+..
T Consensus 16 ~~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 16 SSDSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4488889999999999999988877 2 3334444555555554443
No 61
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=65.35 E-value=6.7 Score=25.03 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 97 TMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAK 140 (150)
Q Consensus 97 ~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~ 140 (150)
....-+.-++++++.++...+.++..+..++..-..++...+.+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~ 64 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREK 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 33334444444444444444444444444433334444444433
No 62
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=65.07 E-value=52 Score=24.09 Aligned_cols=94 Identities=20% Similarity=0.268 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceee
Q 031977 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFV 94 (150)
Q Consensus 15 ~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~v 94 (150)
.+|.....+++.+|..|+..+..|...+..+...+..++.........
T Consensus 24 K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~-------------------------------- 71 (143)
T PF12718_consen 24 KQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR-------------------------------- 71 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------------------------------
Confidence 456666667777777777777777776666655544444421111000
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhh
Q 031977 95 EKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAV---ILQAKLKQL 144 (150)
Q Consensus 95 E~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~---~i~~~~~~~ 144 (150)
....+-++||+..|+..++.....+......+..+.. .+.++++.+
T Consensus 72 ----~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~l 120 (143)
T PF12718_consen 72 ----KSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKAL 120 (143)
T ss_pred ----HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 0001167788888888888777777777766665533 334444443
No 63
>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription]
Probab=64.49 E-value=29 Score=29.54 Aligned_cols=73 Identities=14% Similarity=0.094 Sum_probs=53.0
Q ss_pred eEEEecCCceeEeEEEc-CCCeEEEEccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 63 KMLVPLTASLYVPGTLD-DARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAV 135 (150)
Q Consensus 63 eilvplg~~~yv~g~i~-~~~~VlV~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~ 135 (150)
.-..+|+.-+===|-|. ....-+-|+|.|+.--....+=.+.++.+++.|...-+.|.+.+...+..+..+.+
T Consensus 106 RRIYDITNVLEGI~LIeKksKN~IqW~G~~~~~~~~~~e~~~~l~~e~~~L~~~E~~LD~~i~~~q~~L~~lte 179 (354)
T KOG2577|consen 106 RRIYDITNVLEGIGLIEKKSKNNIQWIGGDFNSTGGVPERLNGLEAEVEDLSQEEDDLDQLIRDCQQNLRLLTE 179 (354)
T ss_pred ceeeehhhhhhcccceeeccccceeeecCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34466665321112221 34456789999999877778888889999999999989999999988888887754
No 64
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=62.95 E-value=44 Score=22.51 Aligned_cols=45 Identities=13% Similarity=0.027 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 100 EGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQL 144 (150)
Q Consensus 100 eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~ 144 (150)
+-..-++..++.|+..++.+.+.-..+..++..+.+.=++...++
T Consensus 26 ~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~ 70 (83)
T PF03670_consen 26 EEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEF 70 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 335677888888888888888888888888777766555554433
No 65
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=60.67 E-value=30 Score=21.15 Aligned_cols=29 Identities=10% Similarity=0.258 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 97 TMDEGKDYCERKINLLKSNFDQLIEVATK 125 (150)
Q Consensus 97 ~~~eA~~~l~rr~~~l~~~~~~l~~~l~~ 125 (150)
+++++...+.++.+.+++++..++.....
T Consensus 33 ~~~~~~~~l~~~~~~i~~~i~~L~~~~~~ 61 (65)
T PF09278_consen 33 PCADRRALLEEKLEEIEEQIAELQALRAQ 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666665555544433
No 66
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=60.48 E-value=50 Score=23.19 Aligned_cols=33 Identities=6% Similarity=0.029 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 101 GKDYCERKINLLKSNFDQLIEVATKKKTISDEA 133 (150)
Q Consensus 101 A~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v 133 (150)
..+.+..++..++.++..++..+..+...+..+
T Consensus 81 ~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~ 113 (118)
T cd04776 81 MLEKIEKRRAELEQQRRDIDAALAELDAAEERC 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333
No 67
>PF15456 Uds1: Up-regulated During Septation
Probab=59.40 E-value=64 Score=23.21 Aligned_cols=93 Identities=16% Similarity=0.166 Sum_probs=56.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEE
Q 031977 9 MEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATS---RLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVL 85 (150)
Q Consensus 9 l~~l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~---e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~Vl 85 (150)
-.-||.+++..+++++. .|..++..++..+. ++.++...+..+...+...
T Consensus 16 feiLs~eEVe~LKkEl~----~L~~R~~~lr~kl~le~k~RdAa~sl~~l~~~~~~~----------------------- 68 (124)
T PF15456_consen 16 FEILSFEEVEELKKELR----SLDSRLEYLRRKLALESKIRDAAHSLSRLYSSSSRR----------------------- 68 (124)
T ss_pred CcccCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-----------------------
Confidence 34578888887777664 36666666655444 3334444444443211111
Q ss_pred EEccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 86 VDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTIS 130 (150)
Q Consensus 86 V~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~ 130 (150)
-+.+-=.-...+++..-++++++.+...+..+++.+..++..+
T Consensus 69 --~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~le~R~~~~~~rL 111 (124)
T PF15456_consen 69 --ARFSRESSLKAEEELAESDRKCEELAQELWKLENRLAEVRQRL 111 (124)
T ss_pred --cCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111112345678888888999988888888888888877654
No 68
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=59.16 E-value=34 Score=22.66 Aligned_cols=47 Identities=11% Similarity=0.166 Sum_probs=33.0
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 031977 95 EKTMDEGKDYCERKINLLKSNFDQ---LIEVATKKKTISDEAAVILQAKL 141 (150)
Q Consensus 95 E~~~~eA~~~l~rr~~~l~~~~~~---l~~~l~~~~~~~~~v~~~i~~~~ 141 (150)
-++++.+...+..|+...+..+.. +.....+-..++..++..++.+.
T Consensus 23 ~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~ 72 (83)
T PF07544_consen 23 SKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKR 72 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999998888777 45555555555555555555544
No 69
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=58.98 E-value=1.2e+02 Score=26.42 Aligned_cols=122 Identities=15% Similarity=0.240 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEE--cCCCeEEEEcc
Q 031977 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTL--DDARKVLVDIG 89 (150)
Q Consensus 12 l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i--~~~~~VlV~lG 89 (150)
|+.+.|-..+..++..+..|+..+..++.+...-..++..+....... -.|+...+..|... ..+... .+.
T Consensus 71 Ln~e~~d~vk~h~d~~i~~l~~~i~~~k~~~~~q~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~ 143 (426)
T smart00806 71 LNVEELDEVKKHIDDEIDTLQNELDEVKQALESQREAIQRLKERQQNS-----AANIARPAASPSPVLASSSSAI--SLA 143 (426)
T ss_pred EeCcchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhc-----ccCcccccCCCCcccccccccc--ccc
Confidence 445667788888999999999888887777766666666665543211 12222222222110 011111 111
Q ss_pred CceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 031977 90 TGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLAP 146 (150)
Q Consensus 90 ~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~~ 146 (150)
++. .+.. ...-.-+..|+..+..+.+....-...+......|..+++..+.
T Consensus 144 ~~~---~~~~---~~~~~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~ 194 (426)
T smart00806 144 NNP---DKLN---KEQRAELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKS 194 (426)
T ss_pred CCC---cccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1111 11124556666666666666666666666666666666665543
No 70
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=58.34 E-value=37 Score=28.23 Aligned_cols=81 Identities=19% Similarity=0.283 Sum_probs=53.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCe
Q 031977 8 GMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATS----RLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARK 83 (150)
Q Consensus 8 ~l~~l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~----e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~ 83 (150)
++..+...+|--.+.+++.+++.++-+-.=++..+. ++..+.+-++.++. |||--|-|..+.=.++.-
T Consensus 21 ~~~~~~~~dly~r~k~le~~le~l~vqe~yik~e~~~lkre~~~aqeevkriqs--------vplvigqfle~vdqnt~i 92 (408)
T KOG0727|consen 21 QLSGLDKEDLYVRYKKLERELELLEVQEDYIKDEQRNLKRELLHAQEEVKRIQS--------VPLVIGQFLEAVDQNTAI 92 (408)
T ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cchHHHHHHHhhhccCce
Confidence 455566778888888999988888766555544443 34445555555442 788888888776555555
Q ss_pred EEEEccCceeeec
Q 031977 84 VLVDIGTGYFVEK 96 (150)
Q Consensus 84 VlV~lG~g~~vE~ 96 (150)
|=-.-|++|||-.
T Consensus 93 vgsttgsny~vri 105 (408)
T KOG0727|consen 93 VGSTTGSNYYVRI 105 (408)
T ss_pred eecccCCceEEee
Confidence 5556788899854
No 71
>PHA02562 46 endonuclease subunit; Provisional
Probab=58.06 E-value=1.2e+02 Score=26.47 Aligned_cols=31 Identities=13% Similarity=0.180 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 99 DEGKDYCERKINLLKSNFDQLIEVATKKKTI 129 (150)
Q Consensus 99 ~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~ 129 (150)
+.....+...+..++.+++.+...+.++...
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~ 328 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEI 328 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666666633333
No 72
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=57.53 E-value=54 Score=25.13 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=35.4
Q ss_pred ccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 88 IGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEA 133 (150)
Q Consensus 88 lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v 133 (150)
||++-|-+.=..+|..-..++++.+++.++.+...+..++..+...
T Consensus 50 iGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 50 IGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred ccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7876666666667777888888888888888888888887777655
No 73
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=57.30 E-value=37 Score=19.82 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLES 47 (150)
Q Consensus 13 ~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~ 47 (150)
.+++|.++.=.|+.++..-..++..++..+..|+.
T Consensus 5 ~ieelkqll~rle~eirett~sl~ninksidq~dk 39 (46)
T PF08181_consen 5 KIEELKQLLWRLENEIRETTDSLRNINKSIDQYDK 39 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 36777888888888888887777777777766643
No 74
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=57.10 E-value=55 Score=22.63 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 031977 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLS 56 (150)
Q Consensus 15 ~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~ 56 (150)
++|....++.+ .-...+..|+..+..+.+|..+|+.|.
T Consensus 46 ~~LL~~i~~~e----e~R~~~E~lQdkL~qi~eAR~AlDalR 83 (96)
T PF12210_consen 46 PQLLKYIQEQE----EKRVYYEGLQDKLAQIKEARAALDALR 83 (96)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443 356677788888888888888888775
No 75
>PF12757 DUF3812: Protein of unknown function (DUF3812); InterPro: IPR024527 This family of fungal proteins represents the eisosome 1 family. Eisosome protein 1 is required for normal formation of eisosomes, large cytoplasmic protein assemblies that localize to specialised domains on plasma membrane and mark the site of endocytosis [].
Probab=56.78 E-value=46 Score=23.89 Aligned_cols=10 Identities=30% Similarity=0.497 Sum_probs=4.7
Q ss_pred EEecCCceeE
Q 031977 65 LVPLTASLYV 74 (150)
Q Consensus 65 lvplg~~~yv 74 (150)
.|+||+|.|+
T Consensus 60 kV~lGGGl~m 69 (126)
T PF12757_consen 60 KVNLGGGLFM 69 (126)
T ss_pred eeeCCCCccc
Confidence 3455544443
No 76
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=55.95 E-value=70 Score=25.57 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~ 54 (150)
..++.+..++|.+|+..|+.....++....+.....+.++.
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45666677777777777777777776666666665554443
No 77
>PF01330 RuvA_N: RuvA N terminal domain; InterPro: IPR013849 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. This entry represents domain I of RuvA, which has an OB-fold structure. This domain forms the RuvA tetramer contacts [].; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJP_A 1D8L_B 1CUK_A 1C7Y_A 1IXR_B 2ZTC_A 2ZTD_B 2H5X_A 2ZTE_A 1BVS_E ....
Probab=55.66 E-value=20 Score=22.16 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=22.4
Q ss_pred eeEeEEEc--CCCeEEEEccC-ceeeecCHHHH
Q 031977 72 LYVPGTLD--DARKVLVDIGT-GYFVEKTMDEG 101 (150)
Q Consensus 72 ~yv~g~i~--~~~~VlV~lG~-g~~vE~~~~eA 101 (150)
.|++|+|. +++.|++++|. ||-|-.|....
T Consensus 3 ~~l~G~v~~~~~~~vvi~~~GvGy~v~v~~~~~ 35 (61)
T PF01330_consen 3 AYLKGKVVEKNPDYVVIDVNGVGYEVFVPSNTL 35 (61)
T ss_dssp EEEEEEEEEEESSEEEEEETTEEEEEEE-HHHH
T ss_pred cEEEEEEEEEcCCEEEEEECCEEEEEEeCCchH
Confidence 48899996 58899999984 88877776543
No 78
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=55.53 E-value=73 Score=23.90 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 97 TMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKL 141 (150)
Q Consensus 97 ~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~ 141 (150)
|.-.+.+.+.++|+.++..+.-+...-.++...+.......+.+-
T Consensus 81 P~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEkn 125 (159)
T PF04949_consen 81 PMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKN 125 (159)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888888877777777666554
No 79
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=55.10 E-value=81 Score=24.76 Aligned_cols=43 Identities=12% Similarity=0.130 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 031977 103 DYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLA 145 (150)
Q Consensus 103 ~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~ 145 (150)
..+..+...++.++..+.+.+..+..++...++.+..++.+++
T Consensus 189 G~i~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf~~me 231 (239)
T PF07195_consen 189 GSITSRIDSLNSQIKSLDKQIEDLEERLESKEERLRKQFSAME 231 (239)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777777777777777666666665543
No 80
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=55.03 E-value=75 Score=23.22 Aligned_cols=45 Identities=7% Similarity=0.114 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 10 EKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (150)
Q Consensus 10 ~~l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~ 54 (150)
-.+|+++|....+.|..-++.-............+..+++..+..
T Consensus 19 re~~~e~Lee~~ekl~~vv~er~~~~~~~~~~~~er~~~l~~i~~ 63 (134)
T PRK10328 19 REFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKINTWLE 63 (134)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999877777666655555555555544444443
No 81
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=54.92 E-value=42 Score=22.72 Aligned_cols=13 Identities=15% Similarity=0.138 Sum_probs=8.4
Q ss_pred cCHHHHHHHHHHH
Q 031977 96 KTMDEGKDYCERK 108 (150)
Q Consensus 96 ~~~~eA~~~l~rr 108 (150)
+|++++.++++..
T Consensus 58 ~~l~~i~~~~~~~ 70 (103)
T cd01106 58 FSLKEIKELLKDP 70 (103)
T ss_pred CCHHHHHHHHHcC
Confidence 5667777766554
No 82
>PTZ00464 SNF-7-like protein; Provisional
Probab=54.75 E-value=59 Score=25.53 Aligned_cols=36 Identities=8% Similarity=0.143 Sum_probs=30.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 96 KTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISD 131 (150)
Q Consensus 96 ~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~ 131 (150)
-|..+|+.-+++|.+.+.+.+.++..++...+..+.
T Consensus 14 ~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k 49 (211)
T PTZ00464 14 PTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQ 49 (211)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999988877776664
No 83
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=54.09 E-value=1.2e+02 Score=24.54 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=42.7
Q ss_pred eEEEEccCce--eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 83 KVLVDIGTGY--FVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKL 141 (150)
Q Consensus 83 ~VlV~lG~g~--~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~ 141 (150)
.++-+|-+-| .+.....++...+..++..+......-...+...+..+..+...++..-
T Consensus 169 ~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~ 229 (312)
T PF00038_consen 169 AALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQ 229 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhh
Confidence 4455555544 6777888899999999999888887777777777777776666665443
No 84
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=53.63 E-value=45 Score=28.66 Aligned_cols=54 Identities=19% Similarity=0.227 Sum_probs=42.4
Q ss_pred CceEEEecCCceeEeEEEcCCCeEEEEccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 61 GAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATK 125 (150)
Q Consensus 61 ~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~ 125 (150)
+..+++|||.+.. .-++|-.|+|=.|.-+|...|.+.-++-.+..+.++..|..
T Consensus 205 de~~llPL~~dtL-----------t~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRk 258 (473)
T KOG3905|consen 205 DEHVLLPLGQDTL-----------THNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRK 258 (473)
T ss_pred ccccccccCCcch-----------hhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHH
Confidence 4567888887543 34688899999999999999988888888888877776654
No 85
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=53.61 E-value=72 Score=22.03 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=6.5
Q ss_pred cCHHHHHHHHH
Q 031977 96 KTMDEGKDYCE 106 (150)
Q Consensus 96 ~~~~eA~~~l~ 106 (150)
+|+++..++++
T Consensus 57 ~sl~eI~~~l~ 67 (112)
T cd01282 57 LTLEEIREFLP 67 (112)
T ss_pred CCHHHHHHHHH
Confidence 55666666654
No 86
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=53.22 E-value=53 Score=20.39 Aligned_cols=36 Identities=6% Similarity=0.075 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 105 CERKINLLKSNFDQLIEVATKKKTISDEAAVILQAK 140 (150)
Q Consensus 105 l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~ 140 (150)
++.++..++..++.++++..+++..+..+.+-++..
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555443
No 87
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=52.81 E-value=83 Score=22.99 Aligned_cols=43 Identities=12% Similarity=0.146 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 10 EKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTAL 52 (150)
Q Consensus 10 ~~l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l 52 (150)
-.+|+++|..+.+.|..-++.-..........+.+....++.+
T Consensus 19 re~~~e~Lee~~ekl~~vv~er~ee~~~~~~~~~er~~kl~~~ 61 (135)
T PRK10947 19 RECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQY 61 (135)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999998777777666665555555554444433
No 88
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=52.70 E-value=75 Score=21.95 Aligned_cols=55 Identities=15% Similarity=0.136 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceeeecCHHHHH
Q 031977 43 SRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGK 102 (150)
Q Consensus 43 ~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE~~~~eA~ 102 (150)
.+-++-.+.++.|.++ .+ |-.++|++-...-...+.+.|.+|.|..+....+.-.
T Consensus 32 Kr~K~~~~ml~sL~kG---D~--VvT~gGi~G~V~~v~d~~v~I~l~~~~~i~~~k~aI~ 86 (97)
T COG1862 32 KRMKEHQELLNSLKKG---DE--VVTIGGIVGTVTKVGDDTVEIELGDGTKIKFEKEAIA 86 (97)
T ss_pred HHHHHHHHHHHhccCC---CE--EEEcCCeEEEEEEEecCcEEEEECCCeEEEEEHHHHH
Confidence 3444556667777753 34 3345667755544455569999999999988765433
No 89
>PF14282 FlxA: FlxA-like protein
Probab=52.60 E-value=59 Score=22.52 Aligned_cols=37 Identities=11% Similarity=0.227 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 10 EKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLE 46 (150)
Q Consensus 10 ~~l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~ 46 (150)
..++.++-....+.|+.+|..|+.+|..+.....+-.
T Consensus 42 ~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 42 SDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777888888888888888888776665543
No 90
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=52.60 E-value=45 Score=26.21 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLA 145 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~ 145 (150)
+.....-++++++.++++++.++..+..+.+++..=-..|+..+.+++
T Consensus 191 i~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf~~me~~i~~ln 238 (239)
T PF07195_consen 191 ITSRIDSLNSQIKSLDKQIEDLEERLESKEERLRKQFSAMESLISQLN 238 (239)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346677777888888888888888877777777766666666666554
No 91
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=52.26 E-value=71 Score=21.58 Aligned_cols=44 Identities=11% Similarity=0.252 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 11 KMSVEQLKAIKEQT-DLEVNLLQDSLNNIRTATSRLESASTALHD 54 (150)
Q Consensus 11 ~l~~~qL~~~~~ql-~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~ 54 (150)
-+|+.++..+.+.. ..-.+.+..+...|...+.++..+++.|+.
T Consensus 57 g~~l~~i~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 101 (103)
T cd01106 57 GFSLKEIKELLKDPSEDLLEALREQKELLEEKKERLDKLIKTIDR 101 (103)
T ss_pred CCCHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777666665 555677888888888888888888777754
No 92
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=51.47 E-value=56 Score=20.54 Aligned_cols=41 Identities=15% Similarity=0.206 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~ 54 (150)
..++.....+++.+++.++.....|+..+..+....+.|+.
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~ 59 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEK 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 34455555556666666666666666666666334444444
No 93
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=51.20 E-value=1e+02 Score=23.36 Aligned_cols=16 Identities=0% Similarity=0.196 Sum_probs=12.2
Q ss_pred CCCCHHHHHHHHHHHH
Q 031977 10 EKMSVEQLKAIKEQTD 25 (150)
Q Consensus 10 ~~l~~~qL~~~~~ql~ 25 (150)
..|++++...+.+.+.
T Consensus 78 ~~ltl~~vI~fLq~l~ 93 (161)
T TIGR02894 78 GSLTLQDVISFLQNLK 93 (161)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 6678888888777775
No 94
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=50.98 E-value=69 Score=21.07 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQL 144 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~ 144 (150)
..+..+-+++-++.++++++.+..+...+-.+.+.+.+-++.+....
T Consensus 24 l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v 70 (90)
T PF06103_consen 24 LKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKV 70 (90)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34445555566666666666666666666666666666666665543
No 95
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=50.58 E-value=38 Score=31.16 Aligned_cols=39 Identities=10% Similarity=0.005 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031977 105 CERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQ 143 (150)
Q Consensus 105 l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~ 143 (150)
+..|.+.++++++.+.+++..+..++...++.+..++.+
T Consensus 598 i~~r~~~l~~~i~~l~~~i~~~e~rl~~~e~rl~~QFta 636 (661)
T PRK06664 598 IYNKVKGLDERIADNNKKIEEYEKKLESKERKLKGKYLT 636 (661)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666666666555543
No 96
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=50.53 E-value=57 Score=25.60 Aligned_cols=43 Identities=28% Similarity=0.390 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 102 KDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQL 144 (150)
Q Consensus 102 ~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~ 144 (150)
-+|..|++..|.+.++.|...+...+..+..+...|.+..+.+
T Consensus 160 AE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L 202 (205)
T KOG1003|consen 160 AEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQEL 202 (205)
T ss_pred HHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4788899999999999999999999999999988888877654
No 97
>COG3685 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.18 E-value=19 Score=27.40 Aligned_cols=55 Identities=9% Similarity=0.054 Sum_probs=47.7
Q ss_pred EEEEccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 84 VLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQA 139 (150)
Q Consensus 84 VlV~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~ 139 (150)
.+=|++.=||.|+-+.+|..-.-++.. ..+....+++.+.+-+.++.+++++++.
T Consensus 10 f~~~LrD~y~aEkq~~kaL~kma~~~~-~~~Lka~~E~Hl~ET~~qi~rLe~Vfe~ 64 (167)
T COG3685 10 FIDTLRDIYAAEKQILKALPKMARRAQ-YPELKAAIEKHLEETKGQIERLEQVFER 64 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344678889999999999999999998 6777777888999999999999999887
No 98
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.59 E-value=41 Score=26.41 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 97 TMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEA 133 (150)
Q Consensus 97 ~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v 133 (150)
++.+|+.-+++|-..+++.|.+|..+|.+.+.++..+
T Consensus 16 sL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~ 52 (218)
T KOG1655|consen 16 SLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKT 52 (218)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 5778999999999999999999999999999988765
No 99
>PRK02224 chromosome segregation protein; Provisional
Probab=49.23 E-value=2.3e+02 Score=26.48 Aligned_cols=39 Identities=10% Similarity=-0.001 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 100 EGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQ 138 (150)
Q Consensus 100 eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~ 138 (150)
+..+.+..++..++..+..+...+..++..+..+...+.
T Consensus 258 ~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~ 296 (880)
T PRK02224 258 AEIEDLRETIAETEREREELAEEVRDLRERLEELEEERD 296 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666666666666666665555554433
No 100
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=48.99 E-value=44 Score=29.15 Aligned_cols=39 Identities=10% Similarity=0.106 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031977 105 CERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQ 143 (150)
Q Consensus 105 l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~ 143 (150)
+..|.+.+...+..+.+++..+..++...++.+...+.+
T Consensus 404 l~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~a 442 (462)
T PRK08032 404 IKTATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQ 442 (462)
T ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666666666666655544
No 101
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=48.92 E-value=80 Score=21.41 Aligned_cols=40 Identities=10% Similarity=0.088 Sum_probs=20.3
Q ss_pred cCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 96 KTMDEGKDYCER--KINLLKSNFDQLIEVATKKKTISDEAAV 135 (150)
Q Consensus 96 ~~~~eA~~~l~r--r~~~l~~~~~~l~~~l~~~~~~~~~v~~ 135 (150)
+|++++..++.. ....+...++.+...+..++.....+..
T Consensus 58 ~~l~ei~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 99 (102)
T cd04775 58 LPLEEIAGCLAQPHVQAILEERLQSLNREIQRLRQQQQVLAA 99 (102)
T ss_pred CCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666665533 2344455555555555555554444443
No 102
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=48.47 E-value=65 Score=30.02 Aligned_cols=44 Identities=20% Similarity=0.135 Sum_probs=24.1
Q ss_pred ceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 91 GYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAV 135 (150)
Q Consensus 91 g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~ 135 (150)
|.|.|.+... .+++..|.+..-..+..|...+..++..+.....
T Consensus 344 ~~~ye~Di~~-~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~ 387 (717)
T PF09730_consen 344 GDYYEVDING-LEILECKYKVAVSEVIQLKAELKALKSKYNELEE 387 (717)
T ss_pred cchhhhcccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555543 5556666666666666666666655554444433
No 103
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=48.33 E-value=75 Score=21.84 Aligned_cols=35 Identities=20% Similarity=0.146 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 97 TMDEGKDYCERKINLLKSNFDQLIEVATKKKTISD 131 (150)
Q Consensus 97 ~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~ 131 (150)
++++..+++.+++..++.++..++..+..+...+.
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (113)
T cd01109 76 TIPERLELLEEHREELEEQIAELQETLAYLDYKID 110 (113)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999998888776554
No 104
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=48.31 E-value=75 Score=22.03 Aligned_cols=43 Identities=7% Similarity=0.054 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031977 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDL 55 (150)
Q Consensus 13 ~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L 55 (150)
...++.+...+++++++.++++-..|...+..+....+.++.+
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~ 70 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEER 70 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHH
Confidence 4566777777777888888888888888888887655666654
No 105
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=48.30 E-value=1.2e+02 Score=24.66 Aligned_cols=24 Identities=17% Similarity=0.055 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNN 37 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~ 37 (150)
+.+|.+..++|.+++..+..++..
T Consensus 68 ~~~l~~EN~~Lr~e~~~l~~~~~~ 91 (283)
T TIGR00219 68 VNNLEYENYKLRQELLKKNQQLEI 91 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666444444
No 106
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=48.24 E-value=1e+02 Score=22.34 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=8.4
Q ss_pred EeEEEcCCCeEEEEccCce
Q 031977 74 VPGTLDDARKVLVDIGTGY 92 (150)
Q Consensus 74 v~g~i~~~~~VlV~lG~g~ 92 (150)
+.|++.. -|-|.+|+++
T Consensus 96 ~qg~vE~--~v~V~vGD~~ 112 (131)
T PF11068_consen 96 VQGQVES--FVEVKVGDNW 112 (131)
T ss_dssp EEEEEEE--EEEE-TTSBH
T ss_pred eeeeeEE--EEEEecCCCh
Confidence 4555543 4556666654
No 107
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.01 E-value=1e+02 Score=24.99 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 16 QLKAIKEQTDLEVNLLQDSLNNIRTATSRLE 46 (150)
Q Consensus 16 qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~ 46 (150)
.|.....++++.+..|++++..++..+..+.
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777778888888888888887777776
No 108
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=47.83 E-value=47 Score=28.96 Aligned_cols=45 Identities=9% Similarity=0.140 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 031977 101 GKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLA 145 (150)
Q Consensus 101 A~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~ 145 (150)
-.+-++.+++.++++++.++..+..+.+++..=-..|+..+.+++
T Consensus 407 ~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~~~s~mn 451 (462)
T PRK08032 407 ATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLN 451 (462)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777766666555455555555444
No 109
>PRK07737 fliD flagellar capping protein; Validated
Probab=47.62 E-value=46 Score=29.43 Aligned_cols=42 Identities=5% Similarity=0.091 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 103 DYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQL 144 (150)
Q Consensus 103 ~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~ 144 (150)
+.|.++++.++++++.++..+..+.+++..=-..|+..+.++
T Consensus 444 ~~l~~~i~~l~~~i~~~~~rl~~~e~ry~~qf~ale~~~s~m 485 (501)
T PRK07737 444 FAIGKDLNQIETQIDRFQDRLKQIEDRYYKKFSAMEKAIQKA 485 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666555444433333333333333
No 110
>PHA02047 phage lambda Rz1-like protein
Probab=47.41 E-value=35 Score=23.72 Aligned_cols=43 Identities=9% Similarity=0.095 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 031977 103 DYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLA 145 (150)
Q Consensus 103 ~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~ 145 (150)
+-+..+++.++..+..+++....++..-+.....|...+.+.+
T Consensus 37 ~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n~ 79 (101)
T PHA02047 37 KRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQNR 79 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344455555555555555555555555555555555554433
No 111
>PRK06798 fliD flagellar capping protein; Validated
Probab=47.38 E-value=41 Score=29.27 Aligned_cols=40 Identities=10% Similarity=0.043 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031977 104 YCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQ 143 (150)
Q Consensus 104 ~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~ 143 (150)
+|..|.+.++.+++.+..++..+..++...++.+.+++.+
T Consensus 376 ~i~~r~~~l~~~i~~l~~~~~~~e~rl~~~e~~l~~qf~a 415 (440)
T PRK06798 376 IIGERSKSIDNRVSKLDLKITDIDTQNKQKQDNIVDKYQK 415 (440)
T ss_pred eeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777777777777777776666666665543
No 112
>PRK02224 chromosome segregation protein; Provisional
Probab=47.27 E-value=2.4e+02 Score=26.28 Aligned_cols=41 Identities=7% Similarity=0.062 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~ 54 (150)
+.++....+.++.+++.+...+..++.....+..+++.++.
T Consensus 407 ~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 447 (880)
T PRK02224 407 LGNAEDFLEELREERDELREREAELEATLRTARERVEEAEA 447 (880)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666666666666666665553
No 113
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=46.23 E-value=83 Score=22.26 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 110 NLLKSNFDQLIEVATKKKTISDEAAV 135 (150)
Q Consensus 110 ~~l~~~~~~l~~~l~~~~~~~~~v~~ 135 (150)
..+...+..+..++.+++.....+..
T Consensus 82 ~~l~~~~~~l~~~i~~L~~~~~~L~~ 107 (127)
T TIGR02047 82 ALLDEHISHVRARIIKLQALIEQLVD 107 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 114
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=46.11 E-value=1.1e+02 Score=21.83 Aligned_cols=11 Identities=36% Similarity=0.317 Sum_probs=6.2
Q ss_pred cCHHHHHHHHH
Q 031977 96 KTMDEGKDYCE 106 (150)
Q Consensus 96 ~~~~eA~~~l~ 106 (150)
+|+++..+++.
T Consensus 59 ~sl~eI~~~l~ 69 (131)
T TIGR02043 59 FTLDEIKELLS 69 (131)
T ss_pred CCHHHHHHHHH
Confidence 35556666554
No 115
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=46.05 E-value=98 Score=21.39 Aligned_cols=35 Identities=14% Similarity=0.197 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 031977 105 CERKINLLKSNFDQL--IEVATKKKTISDEAAVILQA 139 (150)
Q Consensus 105 l~rr~~~l~~~~~~l--~~~l~~~~~~~~~v~~~i~~ 139 (150)
.++|+..++..++.+ ..++..++-.++.++..+..
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~ 83 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKE 83 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHH
Confidence 377888888777777 67777777777766655543
No 116
>PRK13752 putative transcriptional regulator MerR; Provisional
Probab=46.00 E-value=1.2e+02 Score=22.20 Aligned_cols=25 Identities=8% Similarity=0.113 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 110 NLLKSNFDQLIEVATKKKTISDEAA 134 (150)
Q Consensus 110 ~~l~~~~~~l~~~l~~~~~~~~~v~ 134 (150)
..+++.+..+.+++++++.....+.
T Consensus 87 ~ll~~k~~~l~~~i~~L~~~~~~L~ 111 (144)
T PRK13752 87 SLAEHKLKDVREKMADLARMEAVLS 111 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433333
No 117
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.82 E-value=91 Score=25.50 Aligned_cols=41 Identities=15% Similarity=0.214 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 031977 105 CERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLA 145 (150)
Q Consensus 105 l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~ 145 (150)
.+.+++.++..+..++++|..++..|..-...+..++.+++
T Consensus 71 ~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq 111 (265)
T COG3883 71 LQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666666666777777777766666666666665554
No 118
>PRK00295 hypothetical protein; Provisional
Probab=45.66 E-value=79 Score=20.18 Aligned_cols=43 Identities=7% Similarity=0.062 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAK 140 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~ 140 (150)
++.-..|.+.-++.|++.+-..++.|..++.++..+...+...
T Consensus 10 LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 10 LESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566788999999999999999999999999998888877654
No 119
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=45.59 E-value=1.8e+02 Score=25.31 Aligned_cols=82 Identities=21% Similarity=0.218 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC----------CCCceEEEecC--CceeEe------
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLR----------PQGAKMLVPLT--ASLYVP------ 75 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~----------~~~~eilvplg--~~~yv~------ 75 (150)
+-+|...++.|.-+.+.++.+.. +.....++....+-|+.+... -.+....|..+ ...||.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 138 (438)
T PTZ00361 60 LLKLERIKDYLLLEEEFITNQEA-QKPAQEKNEAELKKVDDLRGSPLSVGTLEEIIDENHAIVSSSVGPEYYVNILSFVD 138 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhCCCcEEEEEEEEeCCCeEEEEeCCCCEEEEeccCcCC
Confidence 34555566666666666665553 122233444444555554321 01223444433 334553
Q ss_pred -EEEcCCCeEEEEccCceeeec
Q 031977 76 -GTLDDARKVLVDIGTGYFVEK 96 (150)
Q Consensus 76 -g~i~~~~~VlV~lG~g~~vE~ 96 (150)
..+.....|.++-.++..++.
T Consensus 139 ~~~l~~~~~v~l~~~~~~~~~~ 160 (438)
T PTZ00361 139 KEQLEPGCSVLLHNKTHSVVGI 160 (438)
T ss_pred HhhCCCCCEEEEcCCCCceEec
Confidence 335556666666655555554
No 120
>PRK06798 fliD flagellar capping protein; Validated
Probab=45.19 E-value=53 Score=28.55 Aligned_cols=48 Identities=13% Similarity=0.154 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLA 145 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~ 145 (150)
+..-.+-++.+++.++++++.++..+....+++..=-..|+..+.+++
T Consensus 377 i~~r~~~l~~~i~~l~~~~~~~e~rl~~~e~~l~~qf~ale~~ms~ln 424 (440)
T PRK06798 377 IGERSKSIDNRVSKLDLKITDIDTQNKQKQDNIVDKYQKLESTLAALD 424 (440)
T ss_pred eehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777777777776555555544444444444443
No 121
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=44.92 E-value=95 Score=20.93 Aligned_cols=30 Identities=13% Similarity=0.364 Sum_probs=23.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 7 GGMEKMSVEQLKAIKEQTDLEVNLLQDSLN 36 (150)
Q Consensus 7 i~l~~l~~~qL~~~~~ql~~e~~~l~~~~~ 36 (150)
=|+..||+++|..+.++|+.=+..++..-.
T Consensus 41 edL~~Ls~~eL~~LE~~Le~aL~~VR~rK~ 70 (100)
T PF01486_consen 41 EDLESLSLKELQQLEQQLESALKRVRSRKD 70 (100)
T ss_pred ccccccchHHHHHHHHhhhhhHHHHHHHHH
Confidence 489999999999999999866555554433
No 122
>PRK04406 hypothetical protein; Provisional
Probab=44.30 E-value=89 Score=20.41 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQA 139 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~ 139 (150)
++.-..|.+.-++.|++.+-..+..|..++.++..+.+.+..
T Consensus 16 LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 16 LECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566777777777777777777777777777776665543
No 123
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=44.27 E-value=72 Score=19.34 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 26 LEVNLLQDSLNNIRTATSRLESASTALHD 54 (150)
Q Consensus 26 ~e~~~l~~~~~~L~~~~~e~~~~~e~l~~ 54 (150)
.-.+.+...+..+...+.++......|+.
T Consensus 36 ~~~~~l~~~~~~i~~~i~~L~~~~~~L~~ 64 (65)
T PF09278_consen 36 DRRALLEEKLEEIEEQIAELQALRAQLEH 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33455666666677777777766666654
No 124
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=44.15 E-value=1.2e+02 Score=24.22 Aligned_cols=49 Identities=16% Similarity=0.106 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLAP 146 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~~ 146 (150)
.+++...|+.+.+.-.+.+.++++.+..-...+++..-..++|++++.+
T Consensus 72 ~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta~fqA~qKLksi~~ 120 (272)
T KOG4552|consen 72 REQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTTACFQANQKLKSIKE 120 (272)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777777766666666666666777766543
No 125
>PRK04325 hypothetical protein; Provisional
Probab=44.10 E-value=88 Score=20.30 Aligned_cols=43 Identities=7% Similarity=-0.017 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAK 140 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~ 140 (150)
++.-..|.++-++.|++.+-..+..|..++.++..+...+...
T Consensus 14 LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 14 LEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556778888888888888888888888888888877766543
No 126
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=43.88 E-value=1.1e+02 Score=21.25 Aligned_cols=11 Identities=9% Similarity=0.120 Sum_probs=6.3
Q ss_pred cCHHHHHHHHH
Q 031977 96 KTMDEGKDYCE 106 (150)
Q Consensus 96 ~~~~eA~~~l~ 106 (150)
+|+++..++++
T Consensus 58 ~sl~eI~~~l~ 68 (123)
T cd04770 58 FSLAEIRELLS 68 (123)
T ss_pred CCHHHHHHHHH
Confidence 45566666654
No 127
>PRK10780 periplasmic chaperone; Provisional
Probab=43.80 E-value=73 Score=23.59 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=21.3
Q ss_pred HHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCe
Q 031977 47 SASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARK 83 (150)
Q Consensus 47 ~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~ 83 (150)
...++|+.+.. .+|..+.++-++.+|+...+.=|+.
T Consensus 124 ki~~ai~~vak-~~gy~~Vld~~~v~Y~~~~~DIT~~ 159 (165)
T PRK10780 124 RIQTAVKSVAN-KQGYDLVVDANAVAYNSSDKDITAD 159 (165)
T ss_pred HHHHHHHHHHH-HcCCeEEEeCCceeeeCCCCCchHH
Confidence 33455555542 4578888887777777655443433
No 128
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=43.78 E-value=32 Score=28.70 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=23.1
Q ss_pred ccCceeeecCHHHHHHHHHHHHHHHHHH
Q 031977 88 IGTGYFVEKTMDEGKDYCERKINLLKSN 115 (150)
Q Consensus 88 lG~g~~vE~~~~eA~~~l~rr~~~l~~~ 115 (150)
-|.|=|++.|.+||.+.+.++++.+.+.
T Consensus 12 rg~~~~~~isWdeAl~~ia~~l~~~~~~ 39 (432)
T PF00384_consen 12 RGDGKFVRISWDEALDEIAEKLKEIIDK 39 (432)
T ss_dssp TTSSSEEE--HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEccHHHHHHHhhhhccccccc
Confidence 5889999999999999999999987654
No 129
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=43.47 E-value=2.5e+02 Score=26.13 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 100 EGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQA 139 (150)
Q Consensus 100 eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~ 139 (150)
|.-+-|..|...++..+.+++.++..+.+++..++..++.
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~ 577 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQE 577 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677899999999999999999999999999999988853
No 130
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=43.26 E-value=58 Score=27.82 Aligned_cols=21 Identities=19% Similarity=0.388 Sum_probs=12.8
Q ss_pred EecCCceeEeEEEcCCCeEEEEccC
Q 031977 66 VPLTASLYVPGTLDDARKVLVDIGT 90 (150)
Q Consensus 66 vplg~~~yv~g~i~~~~~VlV~lG~ 90 (150)
+||++++|+. ..+.+.--.|+
T Consensus 303 ~~la~~l~~~----~g~~~~yly~g 323 (406)
T PF02388_consen 303 IPLAGALFIY----YGDEAYYLYGG 323 (406)
T ss_dssp EEEEEEEEEE----ETTEEEEEEEE
T ss_pred ceEEEEEEEE----ECCEEEEEECc
Confidence 8999988864 33444444443
No 131
>PRK00736 hypothetical protein; Provisional
Probab=42.95 E-value=88 Score=19.95 Aligned_cols=42 Identities=10% Similarity=0.079 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQA 139 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~ 139 (150)
++.-..|.++-++.|++.+-.-++.|..+..++..+...+..
T Consensus 10 LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 10 LEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678889999999999999999999999998888777754
No 132
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=42.88 E-value=1.6e+02 Score=23.06 Aligned_cols=46 Identities=22% Similarity=0.388 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 99 DEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQL 144 (150)
Q Consensus 99 ~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~ 144 (150)
+.-.++..+++..|+..++.+...|...+..+..+...|...+..+
T Consensus 189 E~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 189 ENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455677778888888888888888888888888888877766543
No 133
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=42.77 E-value=43 Score=30.80 Aligned_cols=49 Identities=6% Similarity=0.041 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcC
Q 031977 99 DEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLAPA 147 (150)
Q Consensus 99 ~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~~~ 147 (150)
..-.+-++++++.++++++.++..+..+..++..=-..|+..+.+++.+
T Consensus 599 ~~r~~~l~~~i~~l~~~i~~~e~rl~~~e~rl~~QFtaME~~msqmnsq 647 (661)
T PRK06664 599 YNKVKGLDERIADNNKKIEEYEKKLESKERKLKGKYLTMDQTVKKMKEQ 647 (661)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466789999999999999999999888888777777777777666544
No 134
>PRK02119 hypothetical protein; Provisional
Probab=42.38 E-value=94 Score=20.13 Aligned_cols=42 Identities=14% Similarity=0.035 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQA 139 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~ 139 (150)
++.-..|.++-++.|++.+-.-++.|..++.++..+.+.+..
T Consensus 14 LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 14 LEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677888888888888888888888888888888777654
No 135
>PRK14127 cell division protein GpsB; Provisional
Probab=42.36 E-value=1.1e+02 Score=21.61 Aligned_cols=46 Identities=11% Similarity=0.266 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 9 MEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (150)
Q Consensus 9 l~~l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~ 54 (150)
+.-.+..+.-.+.+++-.+++.|...+..|+..+..+...++.+..
T Consensus 20 ~RGYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 20 MRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888888888888888877777777777777666555544
No 136
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=41.43 E-value=1.4e+02 Score=21.77 Aligned_cols=87 Identities=20% Similarity=0.323 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecC-CceeEeEEEcCCCeEEEEccCceeeecCHHHHHHHH
Q 031977 27 EVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLT-ASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYC 105 (150)
Q Consensus 27 e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg-~~~yv~g~i~~~~~VlV~lG~g~~vE~~~~eA~~~l 105 (150)
....+...+...+..+..+.+|.+-|.-+... . -+||+- +.+|+.-+...+ .--++++++-+
T Consensus 31 R~~~lk~dik~~k~~~enledA~~EieL~Ded--d--~~Ip~~vGdvF~~~~~~~~-------------~~~LEe~ke~l 93 (131)
T KOG1760|consen 31 RKDDLKADIKEAKTEIENLEDASNEIELLDED--D--EDIPFKVGDVFIHVKLDKL-------------QDQLEEKKETL 93 (131)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHhhcCcc--c--cccceehhhhheeccHHHH-------------HHHHHHHHHHH
Confidence 33445455555555555555555555554321 1 345533 336666555442 23478999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 106 ERKINLLKSNFDQLIEVATKKKTIS 130 (150)
Q Consensus 106 ~rr~~~l~~~~~~l~~~l~~~~~~~ 130 (150)
.+.++.++..++.+...+..++..+
T Consensus 94 ~k~i~~les~~e~I~~~m~~LK~~L 118 (131)
T KOG1760|consen 94 EKEIEELESELESISARMDELKKVL 118 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998765
No 137
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=41.40 E-value=1.4e+02 Score=29.14 Aligned_cols=73 Identities=16% Similarity=0.119 Sum_probs=47.3
Q ss_pred ceEEEecCCceeEeEEEcCCCeEEEEcc----CceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 62 AKMLVPLTASLYVPGTLDDARKVLVDIG----TGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVIL 137 (150)
Q Consensus 62 ~eilvplg~~~yv~g~i~~~~~VlV~lG----~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i 137 (150)
..++.|=|.-.|.+|-. -.|....| -+-+++.+++..++.+++-...+++++..+.....+.+..+..+...+
T Consensus 622 ~~aytldg~~~~~~g~~---~~~ySt~~~~~r~~~~~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~ 698 (1074)
T KOG0250|consen 622 TKAYTLDGRQIFAGGPN---YRVYSTRGTRARRPGVDEFSFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKL 698 (1074)
T ss_pred eeeeccCccccccCCCC---cceeccCCCCCCCccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888887763 23333333 245899999999999988887777755555555444444444444433
No 138
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=41.38 E-value=1.2e+02 Score=21.78 Aligned_cols=29 Identities=21% Similarity=0.100 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKK 126 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~ 126 (150)
.++...++.+++..++..+..++.....+
T Consensus 76 ~~~~~~~l~~k~~~i~~~i~~L~~~~~~L 104 (131)
T cd04786 76 HDELLAALERKVADIEALEARLAQNKAQL 104 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555554444443
No 139
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=41.03 E-value=86 Score=19.31 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSR 44 (150)
Q Consensus 12 l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e 44 (150)
.++++|......+......+...+..|...+..
T Consensus 4 vd~~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~ 36 (86)
T PF06013_consen 4 VDPEQLRAAAQQLQAQADELQSQLQQLESSIDS 36 (86)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888777666666655555544443
No 140
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=40.83 E-value=1e+02 Score=20.01 Aligned_cols=35 Identities=11% Similarity=0.035 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 101 GKDYCERKINLLKSNFDQLIEVATKKKTISDEAAV 135 (150)
Q Consensus 101 A~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~ 135 (150)
.+.-|...+..++..+..+...+......+..+..
T Consensus 34 ~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 34 TIKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444333
No 141
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=40.74 E-value=1.3e+02 Score=21.43 Aligned_cols=39 Identities=10% Similarity=0.151 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 97 TMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAV 135 (150)
Q Consensus 97 ~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~ 135 (150)
++..-++|++..++.++.++...+++..+.+..+..+..
T Consensus 73 nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~ 111 (120)
T KOG3478|consen 73 NVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQ 111 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777777776666655443
No 142
>PRK02793 phi X174 lysis protein; Provisional
Probab=40.59 E-value=1e+02 Score=19.93 Aligned_cols=43 Identities=14% Similarity=0.032 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAK 140 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~ 140 (150)
++.-..|.+.-++.|++.+-..+..|..++.++..+...+...
T Consensus 13 LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 13 LESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556778888888999999888888888888888887777553
No 143
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=40.58 E-value=31 Score=23.49 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=27.0
Q ss_pred EEccCceeeecCHHHHHHHHHHHHHHHHHHHH
Q 031977 86 VDIGTGYFVEKTMDEGKDYCERKINLLKSNFD 117 (150)
Q Consensus 86 V~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~ 117 (150)
..||-|++-=.|++||.+-+.+.|++.++.+.
T Consensus 54 ~~lgy~v~tFnDcpeA~~eL~~eI~eAK~dLr 85 (91)
T PF08285_consen 54 FTLGYGVATFNDCPEAAKELQKEIKEAKADLR 85 (91)
T ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999888888877664
No 144
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=40.55 E-value=84 Score=19.05 Aligned_cols=30 Identities=20% Similarity=0.246 Sum_probs=19.6
Q ss_pred CCCCCHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 031977 9 MEKMSVEQLKAIKEQTD----LEVNLLQDSLNNI 38 (150)
Q Consensus 9 l~~l~~~qL~~~~~ql~----~e~~~l~~~~~~L 38 (150)
+..+|.++|......|+ +|++.|+..+..=
T Consensus 5 Lk~ls~~eL~~rl~~LD~~ME~Eieelr~RY~~K 38 (49)
T PF11629_consen 5 LKFLSYEELQQRLASLDPEMEQEIEELRQRYQAK 38 (49)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 45788899888777775 5566666655543
No 145
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=40.38 E-value=81 Score=21.59 Aligned_cols=9 Identities=22% Similarity=0.312 Sum_probs=4.4
Q ss_pred CHHHHHHHH
Q 031977 97 TMDEGKDYC 105 (150)
Q Consensus 97 ~~~eA~~~l 105 (150)
|++++..++
T Consensus 60 sl~~i~~l~ 68 (108)
T cd01107 60 PLEEIKEIL 68 (108)
T ss_pred CHHHHHHHH
Confidence 445555444
No 146
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=40.35 E-value=1.3e+02 Score=21.07 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 16 QLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTAL 52 (150)
Q Consensus 16 qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l 52 (150)
++....+.+++.++.+..++..|+..+..+...+..+
T Consensus 77 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~ 113 (118)
T cd04776 77 QLEKMLEKIEKRRAELEQQRRDIDAALAELDAAEERC 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555555555444443
No 147
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=40.17 E-value=87 Score=21.24 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031977 112 LKSNFDQLIEVATKKKTISD 131 (150)
Q Consensus 112 l~~~~~~l~~~l~~~~~~~~ 131 (150)
+.+.++.+..++.+++....
T Consensus 76 l~~~~~~l~~~i~~l~~~~~ 95 (102)
T cd04789 76 LLERLSSLAEQIARKQQARD 95 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333
No 148
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=40.07 E-value=1.2e+02 Score=25.54 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTA 51 (150)
Q Consensus 12 l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~ 51 (150)
++++-|......|.+.+..++.....++..+.+|..++++
T Consensus 189 vDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 189 VDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999988875
No 149
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=39.71 E-value=1.6e+02 Score=22.02 Aligned_cols=70 Identities=20% Similarity=0.341 Sum_probs=41.4
Q ss_pred CCceEEEecCCceeEeEEEcCCCeEEEEccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 60 QGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQA 139 (150)
Q Consensus 60 ~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~ 139 (150)
+....||++|-|-||.=...+. -+|| ..=++|+.+.++.++.-+.+-......+. ..+...++.
T Consensus 81 d~~k~lVDIGTGYyVEK~~e~a--------kdyf-----kRKve~l~kq~e~i~~i~~eK~~~~~~v~---~v~q~Kv~~ 144 (153)
T KOG3048|consen 81 DNSKFLVDIGTGYYVEKDAEDA--------KDYF-----KRKVEYLTKQIEQIEGILKEKTRTRASVM---DVLQAKVQT 144 (153)
T ss_pred cccceeEeccCceEEeechHHH--------HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 3467788888888877655442 2343 45577888888777777766555544444 333344444
Q ss_pred HHHhhC
Q 031977 140 KLKQLA 145 (150)
Q Consensus 140 ~~~~~~ 145 (150)
++..++
T Consensus 145 al~aaq 150 (153)
T KOG3048|consen 145 ALTAAQ 150 (153)
T ss_pred HHHHhh
Confidence 444433
No 150
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=39.47 E-value=1.3e+02 Score=20.94 Aligned_cols=49 Identities=12% Similarity=0.116 Sum_probs=33.4
Q ss_pred HHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceeeecCHH
Q 031977 46 ESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMD 99 (150)
Q Consensus 46 ~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE~~~~ 99 (150)
++-.+.+++|++ |.+ |=.++|+|-.-.=.+.+.|.|.++.|..+.....
T Consensus 44 k~~~~~~~~Lk~---Gd~--VvT~gGi~G~Vv~i~~~~v~lei~~g~~i~~~r~ 92 (106)
T PRK05585 44 KEHKKMLSSLAK---GDE--VVTNGGIIGKVTKVSEDFVIIELNDDTEIKIQKS 92 (106)
T ss_pred HHHHHHHHhcCC---CCE--EEECCCeEEEEEEEeCCEEEEEECCCeEEEEEhH
Confidence 344666777776 334 4456788865432355899999999988887765
No 151
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=39.45 E-value=1e+02 Score=21.19 Aligned_cols=33 Identities=6% Similarity=0.107 Sum_probs=22.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 96 KTMDEGKDYCERKINLLKSNFDQLIEVATKKKT 128 (150)
Q Consensus 96 ~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~ 128 (150)
.+.++..+++..+...++.++..++.....+..
T Consensus 77 ~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 109 (112)
T cd01282 77 RPCPDLLAVLRRELARIDRQIADLTRSRDRLDA 109 (112)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777666655543
No 152
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=39.37 E-value=1.2e+02 Score=21.33 Aligned_cols=24 Identities=4% Similarity=0.169 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 111 LLKSNFDQLIEVATKKKTISDEAA 134 (150)
Q Consensus 111 ~l~~~~~~l~~~l~~~~~~~~~v~ 134 (150)
.+...+..+...+.+++.....+.
T Consensus 83 ~l~~~~~~l~~~i~~L~~~~~~L~ 106 (126)
T cd04785 83 IARAHLADVRARIADLRRLEAELK 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433333
No 153
>PRK04863 mukB cell division protein MukB; Provisional
Probab=39.36 E-value=4.1e+02 Score=27.11 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 103 DYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQA 139 (150)
Q Consensus 103 ~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~ 139 (150)
..+.+.+...+..++.+.+.+......+..++..|..
T Consensus 1077 ~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~ 1113 (1486)
T PRK04863 1077 NQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVN 1113 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555555555444444443
No 154
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=39.32 E-value=1.2e+02 Score=20.94 Aligned_cols=33 Identities=12% Similarity=0.190 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 97 TMDEGKDYCERKINLLKSNFDQLIEVATKKKTI 129 (150)
Q Consensus 97 ~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~ 129 (150)
+.++...++.+++..++.+++.++.....+...
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 108 (123)
T cd04770 76 PCAEVRALLEEKLAEVEAKIAELQALRAELAGL 108 (123)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777766655555443
No 155
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=38.74 E-value=1.7e+02 Score=22.12 Aligned_cols=33 Identities=9% Similarity=0.034 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 109 INLLKSNFDQLIEVATKKKTISDEAAVILQAKL 141 (150)
Q Consensus 109 ~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~ 141 (150)
++.|++....+.+.+..++..+.++..+|.+..
T Consensus 120 ~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RAR 152 (161)
T TIGR02894 120 NEELEKELEKLRQRLSTIEEDYQTLIDIMDRAR 152 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444555555555555443
No 156
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=38.24 E-value=1e+02 Score=19.35 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 105 CERKINLLKSNFDQLIEVATKKKTISDEA 133 (150)
Q Consensus 105 l~rr~~~l~~~~~~l~~~l~~~~~~~~~v 133 (150)
|+.||..|+..|..++..+..+.......
T Consensus 26 L~~RIa~L~aEI~R~~~~~~~K~a~r~AA 54 (59)
T PF06698_consen 26 LEERIALLEAEIARLEAAIAKKSASRAAA 54 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777766666655443
No 157
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=38.22 E-value=1e+02 Score=19.60 Aligned_cols=32 Identities=28% Similarity=0.407 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 105 CERKINLLKSNFDQLIEVATKKKTISDEAAVI 136 (150)
Q Consensus 105 l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~ 136 (150)
++.||..|+..|+.+..++..+..-....+..
T Consensus 30 l~eRIalLq~EIeRlkAe~~kK~~srsAAeaL 61 (65)
T COG5509 30 LEERIALLQAEIERLKAELAKKKASRSAAEAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccHHHHHHH
Confidence 56677777777777777777666655544443
No 158
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=38.20 E-value=3.4e+02 Score=25.44 Aligned_cols=45 Identities=9% Similarity=0.088 Sum_probs=38.1
Q ss_pred ecCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 95 EKTMDEGKDYCERKINLLKS-NFDQLIEVATKKKTISDEAAVILQA 139 (150)
Q Consensus 95 E~~~~eA~~~l~rr~~~l~~-~~~~l~~~l~~~~~~~~~v~~~i~~ 139 (150)
.+|-.+|..+|+-|+..|.+ ...++.+++.++..++..+...|..
T Consensus 404 ~ls~~QaeaIL~mrL~~L~~le~~~i~~E~~~l~~e~~~l~~~L~~ 449 (735)
T TIGR01062 404 KLSAIQAEAILNLRLRHLAKLEEHAIIDEQSELEKERAILEKILKS 449 (735)
T ss_pred CCCHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 48889999999999999976 6778888888888888888777743
No 159
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=37.94 E-value=1e+02 Score=21.77 Aligned_cols=104 Identities=15% Similarity=0.086 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceeeecCHHHH
Q 031977 22 EQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEG 101 (150)
Q Consensus 22 ~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE~~~~eA 101 (150)
.+|+...-.-++++......+.....++...+.-. .++++.+ |.+.|+-++|-=|+ --|.+--
T Consensus 6 ~~lQ~K~~dtqq~~~~~~vQi~~~nr~kk~~~l~~-----ke~~~~~-----------de~~~Y~svgrmF~-l~dk~a~ 68 (114)
T KOG3501|consen 6 SQLQEKAVDTQQQLRTIMVQIAAKNRAKKISELAK-----KELEDVG-----------DEKAVYTSVGRMFM-LSDKAAV 68 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHh-----------hHHHHHHHHHHHHH-cCcHHHH
Confidence 34555555555556555555555555554443322 1222211 22345555554433 3344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 102 KDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLK 142 (150)
Q Consensus 102 ~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~ 142 (150)
...++.+.+..++.++.++..-..+.......+.-|+..++
T Consensus 69 ~s~leak~k~see~IeaLqkkK~YlEk~v~eaE~nLrellq 109 (114)
T KOG3501|consen 69 RSHLEAKMKSSEEKIEALQKKKTYLEKTVSEAEQNLRELLQ 109 (114)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666666666655443
No 160
>KOG3047 consensus Predicted transcriptional regulator UXT [Transcription]
Probab=37.88 E-value=1e+02 Score=22.76 Aligned_cols=85 Identities=18% Similarity=0.172 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhccC----------CCCCceEEEecCCceeEeEEEcCCCeEEEEccCceeeecCHHHHH
Q 031977 34 SLNNIRTATSRLESAST-ALHDLSL----------RPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGK 102 (150)
Q Consensus 34 ~~~~L~~~~~e~~~~~e-~l~~L~~----------~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE~~~~eA~ 102 (150)
.+..|+....++.++.- .++.=.. -.....|.|-||.++|+.-++.+.= +.++.-.
T Consensus 48 eY~kLk~t~eRL~eaahkel~~ktdLGcnfFmdi~VpDTk~i~VaL~~~fflElkLadAi-------------Kf~DRK~ 114 (157)
T KOG3047|consen 48 EYAKLKFTCERLLEAAHKELEGKTDLGCNFFMDIEVPDTKHIVVALCDDFFLELKLADAI-------------KFCDRKM 114 (157)
T ss_pred HHHHHHHHHHHHHHhchhhhhccccccceeeEeeecCCcceEEEEeecceeeeehHHHHH-------------HHHHHhH
Confidence 35566777777665432 2222111 1355777788888888877776632 3455556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 103 DYCERKINLLKSNFDQLIEVATKKKTISD 131 (150)
Q Consensus 103 ~~l~rr~~~l~~~~~~l~~~l~~~~~~~~ 131 (150)
+.+..-.+.|.+.-.++...|.-+-+-+.
T Consensus 115 dlLkel~ekLqKdsmkiKa~ihMLLagl~ 143 (157)
T KOG3047|consen 115 DLLKELMEKLQKDSMKIKADIHMLLAGLD 143 (157)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Confidence 66776677777777777666655544443
No 161
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=37.80 E-value=1.5e+02 Score=21.07 Aligned_cols=27 Identities=7% Similarity=0.095 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 110 NLLKSNFDQLIEVATKKKTISDEAAVI 136 (150)
Q Consensus 110 ~~l~~~~~~l~~~l~~~~~~~~~v~~~ 136 (150)
..+++.+..+..++..++.....+...
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~~ 108 (133)
T cd04787 82 RLIEQRLAETERRIKELLKLRDRMQQA 108 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 162
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=37.71 E-value=1.4e+02 Score=20.93 Aligned_cols=11 Identities=9% Similarity=-0.013 Sum_probs=5.9
Q ss_pred cCHHHHHHHHH
Q 031977 96 KTMDEGKDYCE 106 (150)
Q Consensus 96 ~~~~eA~~~l~ 106 (150)
+|.++..++++
T Consensus 57 ~sl~eI~~~l~ 67 (124)
T TIGR02051 57 FSLEEIGGLLG 67 (124)
T ss_pred CCHHHHHHHHh
Confidence 45555555553
No 163
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=37.67 E-value=1.3e+02 Score=20.49 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 99 DEGKDYCERKINLLKSNFDQLIEVATKKKTIS 130 (150)
Q Consensus 99 ~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~ 130 (150)
++...++..+...++.++..++.....+..-+
T Consensus 74 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~l 105 (108)
T cd01107 74 DELRKLLREKLAELEAEIEELQRILRLLEDRL 105 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888877777666665443
No 164
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=37.49 E-value=2e+02 Score=23.52 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 103 DYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAK 140 (150)
Q Consensus 103 ~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~ 140 (150)
.-..++++.+...++++..+...-..+...+...|+..
T Consensus 49 ~~~~k~~~~l~~~i~~L~~E~~~h~~~~~~v~~~L~~~ 86 (298)
T PF11262_consen 49 SKKKKEKERLKNLIDKLPEELKKHQEHVEKVKKRLQEE 86 (298)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456667777777777777777777777777666654
No 165
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=37.12 E-value=1.1e+02 Score=21.45 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031977 99 DEGKDYCERKINLLKSNFDQL 119 (150)
Q Consensus 99 ~eA~~~l~rr~~~l~~~~~~l 119 (150)
++...++..++..+++++..+
T Consensus 76 ~~~~~~l~~~~~~l~~~i~~L 96 (126)
T cd04783 76 SEARELAEQKLAEVDEKIADL 96 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333
No 166
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=37.01 E-value=2.5e+02 Score=23.87 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 117 DQLIEVATKKKTISDEAAVILQAKLKQL 144 (150)
Q Consensus 117 ~~l~~~l~~~~~~~~~v~~~i~~~~~~~ 144 (150)
.-+.+....+..+...+...+++++...
T Consensus 229 ~~l~~~~~dl~~Q~~~vn~al~~Ri~et 256 (384)
T PF03148_consen 229 SILEQTANDLRAQADAVNAALRKRIHET 256 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666666665543
No 167
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=36.91 E-value=1.5e+02 Score=20.82 Aligned_cols=33 Identities=12% Similarity=0.242 Sum_probs=21.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 96 KTMDEGKDYCERKINLLKSNFDQLIEVATKKKT 128 (150)
Q Consensus 96 ~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~ 128 (150)
.+.++..+++.+++..++.++..+......+..
T Consensus 72 ~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 104 (124)
T TIGR02051 72 THCREMYELASRKLKSVQAKMADLLRIERLLEE 104 (124)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777776555544443
No 168
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=36.85 E-value=1.4e+02 Score=21.46 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=5.3
Q ss_pred cCHHHHHHHHH
Q 031977 96 KTMDEGKDYCE 106 (150)
Q Consensus 96 ~~~~eA~~~l~ 106 (150)
+|+++..++++
T Consensus 59 ~sL~eI~~~l~ 69 (140)
T PRK09514 59 FTLEEIRELLS 69 (140)
T ss_pred CCHHHHHHHHH
Confidence 34555555543
No 169
>PF10400 Vir_act_alpha_C: Virulence activator alpha C-term; InterPro: IPR018309 Phenolic acids, also called substituted hydroxycinnamic acids, are abundant in the plant kingdom because they are involved in the structure of plant cell walls and are present in some vacuoles. In plant-soil ecosystems they are released as free acids by hemicellulases produced by several fungi and bacteria. Of these weak acids, the most abundant are p-coumaric, ferulic, and caffeic acids, considered to be natural toxins that inhibit the growth of microorganisms, especially at low pHs. In spite of this chemical stress, some bacteria can use phenolic acids as a sole source of carbon. For other microorganisms, these compounds induce a specific response by which the organism adapts to its environment. The ubiquitous lactic acid bacterium Lactobacillus plantarum exhibits an inducible phenolic acid decarboxylase (PAD) activity which converts these substrates into less-toxic vinyl phenol derivatives. PadR acts as a repressor of padA gene expression in the phenolic acid stress response []. This entry represents the C-terminal domain.; PDB: 1YG2_A.
Probab=36.39 E-value=97 Score=19.93 Aligned_cols=33 Identities=9% Similarity=0.087 Sum_probs=27.2
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 95 EKTMDEGKDYCERKINLLKSNFDQLIEVATKKK 127 (150)
Q Consensus 95 E~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~ 127 (150)
..+.+.++..+.++....++.+..+......+.
T Consensus 16 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 48 (90)
T PF10400_consen 16 HLDPEEAIELLEERREQHEERLAEYEEIEQEIF 48 (90)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999988775543
No 170
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=36.37 E-value=1.5e+02 Score=20.90 Aligned_cols=27 Identities=7% Similarity=0.089 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 110 NLLKSNFDQLIEVATKKKTISDEAAVI 136 (150)
Q Consensus 110 ~~l~~~~~~l~~~l~~~~~~~~~v~~~ 136 (150)
..++..+..+.+.+.+++.....+...
T Consensus 82 ~~l~~~~~~l~~~i~~L~~~~~~l~~~ 108 (127)
T cd01108 82 ALALEHIAELERKIAELQAMRRTLQQL 108 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 171
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=36.24 E-value=1.5e+02 Score=20.97 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 97 TMDEGKDYCERKINLLKSNFDQLIEVATKKKT 128 (150)
Q Consensus 97 ~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~ 128 (150)
+.++...++..++..++.++..++.....+..
T Consensus 78 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 109 (131)
T TIGR02043 78 SCAEVKAIVDAKLELVDEKINELTKIRRSLKK 109 (131)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777766555544443
No 172
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=36.22 E-value=1.5e+02 Score=20.76 Aligned_cols=11 Identities=18% Similarity=0.292 Sum_probs=6.5
Q ss_pred cCHHHHHHHHH
Q 031977 96 KTMDEGKDYCE 106 (150)
Q Consensus 96 ~~~~eA~~~l~ 106 (150)
+|+++..+++.
T Consensus 58 ~sL~eI~~~l~ 68 (127)
T cd04784 58 MSLDEIRTLLQ 68 (127)
T ss_pred CCHHHHHHHHH
Confidence 45666666654
No 173
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=36.11 E-value=1.7e+02 Score=21.26 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 107 RKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLK 142 (150)
Q Consensus 107 rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~ 142 (150)
+|+..|++........+.++-++...+...++..+.
T Consensus 104 ~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~ 139 (144)
T PF11221_consen 104 KRIKELEEENEEAEEELQEAVKEAEELLKQVQELIR 139 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666666665554
No 174
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=36.02 E-value=27 Score=31.04 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=31.6
Q ss_pred eEEEcCCCeEEEEc------cCceeeecCHHHHHHHHHHHHHHHHHH
Q 031977 75 PGTLDDARKVLVDI------GTGYFVEKTMDEGKDYCERKINLLKSN 115 (150)
Q Consensus 75 ~g~i~~~~~VlV~l------G~g~~vE~~~~eA~~~l~rr~~~l~~~ 115 (150)
.-.+.+++++.-++ |.|=|++.|.+||.+++.+|+..+.+.
T Consensus 47 ~~~~y~pdRl~~Pl~R~g~rG~g~~~~iSWdEAl~~ia~kl~~~~~~ 93 (567)
T cd02765 47 LQRVYSPDRLKYPMKRVGERGEGKFERITWDEALDTIADKLTEAKRE 93 (567)
T ss_pred hhhhcChhhhcCCeeecCCCCCCcEEEecHHHHHHHHHHHHHHHHHH
Confidence 33455666665554 578999999999999999999887654
No 175
>PHA01750 hypothetical protein
Probab=35.83 E-value=1.2e+02 Score=19.59 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 102 KDYCERKINLLKSNFDQLIEVATKKKTISDEAA 134 (150)
Q Consensus 102 ~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~ 134 (150)
.++.++.++.|..++..+......+.+++..+.
T Consensus 37 keIV~~ELdNL~~ei~~~kikqDnl~~qv~eik 69 (75)
T PHA01750 37 KEIVNSELDNLKTEIEELKIKQDELSRQVEEIK 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 355666666666666666655555555555443
No 176
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=35.57 E-value=40 Score=22.22 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=17.6
Q ss_pred CCceeEeEEEcCCCeEEEEc
Q 031977 69 TASLYVPGTLDDARKVLVDI 88 (150)
Q Consensus 69 g~~~yv~g~i~~~~~VlV~l 88 (150)
-.|+||..+..+...|+|=+
T Consensus 8 ~~gvYvYfR~~~~~tVmVil 27 (78)
T PF10438_consen 8 QDGVYVYFRYYDGKTVMVIL 27 (78)
T ss_dssp BTTEEEEEEEESSEEEEEEE
T ss_pred cCCEEEEEEEcCCCEEEEEE
Confidence 57899999999999998865
No 177
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=35.42 E-value=1.6e+02 Score=20.65 Aligned_cols=31 Identities=6% Similarity=0.190 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 97 TMDEGKDYCERKINLLKSNFDQLIEVATKKK 127 (150)
Q Consensus 97 ~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~ 127 (150)
+.++...++..++..+++++..++.....+.
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~ 106 (127)
T cd04784 76 SCAEVNALIDEHLAHVRARIAELQALEKQLQ 106 (127)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777766655544443
No 178
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=35.28 E-value=1.4e+02 Score=20.01 Aligned_cols=44 Identities=16% Similarity=0.232 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKL 141 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~ 141 (150)
+..+...+..+.+.+...+..+...+..++.+...+...|...+
T Consensus 5 L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f 48 (127)
T smart00502 5 LEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAF 48 (127)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666555554443
No 179
>PF13356 DUF4102: Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A.
Probab=35.26 E-value=95 Score=20.31 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=20.8
Q ss_pred EEccCceeeecCHHHHHHHHHHHHHHHHH
Q 031977 86 VDIGTGYFVEKTMDEGKDYCERKINLLKS 114 (150)
Q Consensus 86 V~lG~g~~vE~~~~eA~~~l~rr~~~l~~ 114 (150)
..++.|-|=++|+++|.+....-...+..
T Consensus 48 ~~~~lG~~p~~sl~~AR~~a~~~~~~~~~ 76 (89)
T PF13356_consen 48 RRITLGRYPELSLAEAREKARELRALVRQ 76 (89)
T ss_dssp EEEEEEECTTS-HHHHHHHHHHHHHHHCT
T ss_pred EEeccCCCccCCHHHHHHHHHHHHHHHHc
Confidence 44566789999999999988766655543
No 180
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=35.26 E-value=1.6e+02 Score=20.71 Aligned_cols=30 Identities=13% Similarity=0.138 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 99 DEGKDYCERKINLLKSNFDQLIEVATKKKT 128 (150)
Q Consensus 99 ~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~ 128 (150)
++...++..++..+++++..++.....+..
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~ 107 (127)
T cd01108 78 ADVKALALEHIAELERKIAELQAMRRTLQQ 107 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555544444444433
No 181
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=35.23 E-value=47 Score=29.80 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=24.6
Q ss_pred cCceeeecCHHHHHHHHHHHHHHHHHH
Q 031977 89 GTGYFVEKTMDEGKDYCERKINLLKSN 115 (150)
Q Consensus 89 G~g~~vE~~~~eA~~~l~rr~~~l~~~ 115 (150)
|.|=|++.|.+||.+++..|++.+.+.
T Consensus 69 G~g~~~~ISWdEAld~IA~kl~~i~~~ 95 (609)
T cd02769 69 GKEEFVRVSWDEALDLVAAELKRVRKT 95 (609)
T ss_pred CCCCeEEecHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999998764
No 182
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=34.98 E-value=1.2e+02 Score=19.38 Aligned_cols=40 Identities=18% Similarity=0.332 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031977 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDL 55 (150)
Q Consensus 15 ~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L 55 (150)
.++......++++++.++.....|+..+..+.. .+.|+.+
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~-~~rIe~~ 66 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR-HERIEKI 66 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHH
Confidence 344555555666666666666666666665543 4445444
No 183
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=34.65 E-value=1.8e+02 Score=21.06 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAST 50 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e 50 (150)
+++..++.++...++..++..+.++...+..+.....
T Consensus 77 lDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~ 113 (126)
T PF07889_consen 77 LDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVE 113 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443333
No 184
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=34.62 E-value=1.7e+02 Score=20.71 Aligned_cols=32 Identities=19% Similarity=0.122 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRL 45 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~ 45 (150)
..+|..-+++|..-++.|+++-......+.++
T Consensus 32 ~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eL 63 (107)
T PF09304_consen 32 QGELAKQKDQLRNALQSLQAQNASRNQRIAEL 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333333333
No 185
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=34.61 E-value=1.4e+02 Score=19.77 Aligned_cols=93 Identities=17% Similarity=0.192 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceee
Q 031977 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFV 94 (150)
Q Consensus 15 ~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~v 94 (150)
..|..-...+...+..+..++..+..+..++..+-+.-..+..- | .++|.....- +
T Consensus 8 ~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~v--G-~~fv~~~~~~---------------------~ 63 (106)
T PF01920_consen 8 QELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSV--G-KMFVKQDKEE---------------------A 63 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEE--T-TEEEEEEHHH---------------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHH--h-HHHHHhhHHH---------------------H
Confidence 45566666777778888888888888888887766653334321 2 4455432211 2
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 95 EKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISD 131 (150)
Q Consensus 95 E~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~ 131 (150)
...+++-.+.++..++.+++.+..+...+.+.+..+.
T Consensus 64 ~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888899999999999999988888887765
No 186
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=34.61 E-value=1.7e+02 Score=20.70 Aligned_cols=34 Identities=6% Similarity=0.140 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 97 TMDEGKDYCERKINLLKSNFDQLIEVATKKKTIS 130 (150)
Q Consensus 97 ~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~ 130 (150)
+.++...++..++..++.++..++.....+....
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (127)
T TIGR02047 76 SCSDVNALLDEHISHVRARIIKLQALIEQLVDLR 109 (127)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666665555555433
No 187
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=34.45 E-value=2e+02 Score=23.05 Aligned_cols=8 Identities=0% Similarity=0.322 Sum_probs=3.7
Q ss_pred eeEeEEEc
Q 031977 72 LYVPGTLD 79 (150)
Q Consensus 72 ~yv~g~i~ 79 (150)
++.++-|.
T Consensus 24 ~~a~a~v~ 31 (263)
T PRK10803 24 AFAQAPIS 31 (263)
T ss_pred HhcCCcHH
Confidence 44455443
No 188
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=34.37 E-value=70 Score=24.74 Aligned_cols=31 Identities=16% Similarity=0.165 Sum_probs=23.4
Q ss_pred eeEeEEEc--CCCeEEEEccC-ceeeecCHHHHH
Q 031977 72 LYVPGTLD--DARKVLVDIGT-GYFVEKTMDEGK 102 (150)
Q Consensus 72 ~yv~g~i~--~~~~VlV~lG~-g~~vE~~~~eA~ 102 (150)
.|++|+|. .++.|+|++|. ||.|-.|..-..
T Consensus 3 ~~l~G~i~~~~~~~vvi~~~GvGY~V~vs~~~~~ 36 (197)
T PRK14603 3 AYLSGVVLEKREGSAVLLAGGVGLEVQCPAPTLA 36 (197)
T ss_pred ceEEEEEEEecCCEEEEEECCEEEEEEcCHHHHH
Confidence 47888886 47789998874 999988866443
No 189
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=34.32 E-value=78 Score=28.02 Aligned_cols=48 Identities=13% Similarity=0.119 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 031977 99 DEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLAP 146 (150)
Q Consensus 99 ~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~~ 146 (150)
.....-++++++.+.+.+..+.+.+..+.+++..--..|+..+.+++.
T Consensus 421 ~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~~~~~qf~~m~~~~~~m~s 468 (483)
T COG1345 421 TGRTDSLNKQIKSLDKDIKSLDKRLEAAEERYKTQFNTLDDMMTQMNS 468 (483)
T ss_pred eccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677777777777777777777766666665566555555543
No 190
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=34.08 E-value=1.8e+02 Score=20.95 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 97 TMDEGKDYCERKINLLKSNFDQLIEVATKKKT 128 (150)
Q Consensus 97 ~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~ 128 (150)
+.++..+++.+++..+++.+..++.....+..
T Consensus 78 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 109 (140)
T PRK09514 78 TCQEVKGIVDEKLAEVEAKIAELQHMRRSLQR 109 (140)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677778888888887777776555444433
No 191
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=34.08 E-value=1.8e+02 Score=20.99 Aligned_cols=40 Identities=10% Similarity=0.054 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 105 CERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQL 144 (150)
Q Consensus 105 l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~ 144 (150)
+.-||.+|+.........-..+..++++++-.+.+-....
T Consensus 30 mkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~ 69 (134)
T PF08232_consen 30 MKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKY 69 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678899999999988888899999999999987766543
No 192
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=33.89 E-value=1.8e+02 Score=20.95 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 101 GKDYCERKINLLKSNFDQLIEVAT 124 (150)
Q Consensus 101 A~~~l~rr~~~l~~~~~~l~~~l~ 124 (150)
..+++..++..++.++..++....
T Consensus 80 ~~~~l~~~~~~l~~~i~~L~~~~~ 103 (135)
T PRK10227 80 VKRRTLEKVAEIERHIEELQSMRD 103 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333333
No 193
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=33.88 E-value=1.8e+02 Score=20.90 Aligned_cols=42 Identities=5% Similarity=0.067 Sum_probs=26.5
Q ss_pred cCHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 96 KTMDEGKDYCER----------KINLLKSNFDQLIEVATKKKTISDEAAVIL 137 (150)
Q Consensus 96 ~~~~eA~~~l~r----------r~~~l~~~~~~l~~~l~~~~~~~~~v~~~i 137 (150)
+|+++..++++- ....+.+.+..+...+.++......+...+
T Consensus 58 ~sl~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (135)
T PRK10227 58 FNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMRDQLLALA 109 (135)
T ss_pred CCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888777652 345556666666666666666666655444
No 194
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.62 E-value=1.9e+02 Score=23.64 Aligned_cols=35 Identities=9% Similarity=0.170 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 103 DYCERKINLLKSNFDQLIEVATKKKTISDEAAVIL 137 (150)
Q Consensus 103 ~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i 137 (150)
.-+...++.|..+++.+...+.+++.+++.+...|
T Consensus 48 ~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~ei 82 (265)
T COG3883 48 KNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEI 82 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443333
No 195
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.56 E-value=1.6e+02 Score=23.96 Aligned_cols=52 Identities=10% Similarity=0.075 Sum_probs=38.1
Q ss_pred eeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 92 YFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQL 144 (150)
Q Consensus 92 ~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~ 144 (150)
.++-.+.--....++.++..++..+++++. +.+++.+.+.+...++.....+
T Consensus 48 ~~~~~~~~~~~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~ 99 (262)
T COG1729 48 ERVQNAHSYRLTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARL 99 (262)
T ss_pred ccccchhhhccHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhh
Confidence 455556666778888888888888888888 8888887766666666664443
No 196
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=33.46 E-value=1.3e+02 Score=19.11 Aligned_cols=51 Identities=27% Similarity=0.266 Sum_probs=39.2
Q ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Q 031977 93 FVEKTMDEGKDYCERKINLLKSNFDQLIEVATK-KKTISDEAAVILQAKLKQ 143 (150)
Q Consensus 93 ~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~-~~~~~~~v~~~i~~~~~~ 143 (150)
|.-.+=.+.++.+.++.+.+.+....+.....+ ++.......+.+..++.+
T Consensus 19 ~aP~sG~e~R~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~e 70 (74)
T PF12732_consen 19 FAPKSGKETREKLKDKAEDLKDKAKDLYEEAKEKVKEKAEETADEAKEKAKE 70 (74)
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888999999998888888888777 777777766666666554
No 197
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=33.40 E-value=1.7e+02 Score=20.47 Aligned_cols=43 Identities=14% Similarity=0.131 Sum_probs=27.1
Q ss_pred ecCHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 95 EKTMDEGKDYCER--------KINLLKSNFDQLIEVATKKKTISDEAAVIL 137 (150)
Q Consensus 95 E~~~~eA~~~l~r--------r~~~l~~~~~~l~~~l~~~~~~~~~v~~~i 137 (150)
-+|.++..++++. ....+...++.+.+++.+++.....+...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~ 107 (126)
T cd04783 57 GFTLDEIAELLELDDGTDCSEARELAEQKLAEVDEKIADLQRMRASLQELV 107 (126)
T ss_pred CCCHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888753 345556666666666666665555555444
No 198
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=33.39 E-value=1.2e+02 Score=19.87 Aligned_cols=9 Identities=11% Similarity=-0.012 Sum_probs=3.9
Q ss_pred CHHHHHHHH
Q 031977 97 TMDEGKDYC 105 (150)
Q Consensus 97 ~~~eA~~~l 105 (150)
|.+++..++
T Consensus 60 ~l~~i~~~l 68 (91)
T cd04766 60 NLAGVKRIL 68 (91)
T ss_pred CHHHHHHHH
Confidence 444444444
No 199
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=33.29 E-value=1.3e+02 Score=19.81 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIRT 40 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~ 40 (150)
|.+|.+.+++|+.++..|+.+|-.+..
T Consensus 4 L~~l~~~k~~Le~~L~~lE~qIy~~Et 30 (80)
T PF09340_consen 4 LKELLQKKKKLEKDLAALEKQIYDKET 30 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788888877777766655553
No 200
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=33.26 E-value=1.6e+02 Score=20.03 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (150)
Q Consensus 15 ~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~ 54 (150)
.+|.+....++. +-++|..+...+.+++.+...|+.
T Consensus 52 ~~l~~k~~~l~~----~l~~Id~Ie~~V~~LE~~v~~LD~ 87 (99)
T PF10046_consen 52 EDLNQKYEELQP----YLQQIDQIEEQVTELEQTVYELDE 87 (99)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433 223333334455555555444444
No 201
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=33.09 E-value=1.7e+02 Score=20.49 Aligned_cols=25 Identities=4% Similarity=0.084 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 111 LLKSNFDQLIEVATKKKTISDEAAV 135 (150)
Q Consensus 111 ~l~~~~~~l~~~l~~~~~~~~~v~~ 135 (150)
.+...+..+...+.+++.....+..
T Consensus 83 ~l~~~~~~l~~~i~~L~~~~~~L~~ 107 (127)
T TIGR02044 83 RTLEKVAEIERKISELQSMRDQLEA 107 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 202
>PF05499 DMAP1: DNA methyltransferase 1-associated protein 1 (DMAP1); InterPro: IPR008468 DNA methylation can contribute to transcriptional silencing through several transcriptionally repressive complexes, which include methyl-CpG binding domain proteins (MBDs) and histone deacetylases (HDACs). The chief enzyme that maintains mammalian DNA methylation, DNMT1, can also establish a repressive transcription complex. The non-catalytic N terminus of DNMT1 binds to HDAC2 and DMAP1 (for DNMT1 associated protein), and can mediate transcriptional repression. DMAP1 has intrinsic transcription repressive activity, and binds to the transcriptional co-repressor TSG101. DMAP1 is targeted to replication foci through interaction with the far N terminus of DNMT1 throughout S phase, whereas HDAC2 joins DNMT1 and DMAP1 only during late S phase, providing a platform for how histones may become deacetylated in heterochromatin following replication [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.05 E-value=2.3e+02 Score=21.80 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=44.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 031977 5 KGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSL 57 (150)
Q Consensus 5 ~~i~l~~l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~ 57 (150)
-+||+.+++-+.+...++.|+.++=.|..--..+...--+++......+.|.+
T Consensus 117 lgv~~~PmPTe~Ic~~fneLRsdivlL~eLk~a~~~~E~El~~lr~r~eal~~ 169 (176)
T PF05499_consen 117 LGVDLNPMPTEEICQEFNELRSDIVLLYELKQALQNCEYELQSLRHRYEALAP 169 (176)
T ss_pred cCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhCC
Confidence 35899999999999999999999988888777777777777777777777765
No 203
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=32.96 E-value=93 Score=22.03 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=35.0
Q ss_pred ceeEeEEEcCCCeEEEEccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 71 SLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQL 144 (150)
Q Consensus 71 ~~yv~g~i~~~~~VlV~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~ 144 (150)
.-|+||.|..+-.++ =++-.++.++|..|+++=. .+=.++..+...+...++.+ .|++++..+
T Consensus 15 r~F~p~~V~~P~~~f-----~~~~~kd~~ea~~F~~kV~----~qH~~~~~e~r~L~kKi~~l--~veRkmr~L 77 (109)
T PF11690_consen 15 RGFEPGQVLFPHAVF-----RHLPSKDKKEAYDFIDKVV----DQHQRYCDERRKLRKKIQDL--RVERKMRAL 77 (109)
T ss_pred cccccccccCHHHHH-----ccCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH--HHHHHHHhc
Confidence 447788777777666 3456778888888887422 22222233333333333333 556665543
No 204
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=32.94 E-value=2.7e+02 Score=22.57 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=25.6
Q ss_pred ceeEeEEEcCCCeEEEEccCceeeecCHHHHHHHHHH
Q 031977 71 SLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCER 107 (150)
Q Consensus 71 ~~yv~g~i~~~~~VlV~lG~g~~vE~~~~eA~~~l~r 107 (150)
-.|+.+.... .|=+-+|++|..=.+.++|.+.+.-
T Consensus 233 ~~~~~~~~e~--e~~i~lg~~~iaapsREdave~l~i 267 (290)
T COG4026 233 QGYIYAEDEK--EVEILLGTVYIAAPSREDAVEELEI 267 (290)
T ss_pred eeeeeccccc--ccceeeeeeeeecCchHHHHHHHHH
Confidence 3466665443 4446789999999999999887653
No 205
>PRK13752 putative transcriptional regulator MerR; Provisional
Probab=32.94 E-value=1.6e+02 Score=21.44 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTISD 131 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~ 131 (150)
.+++..++..++..+++++..++.....+...+.
T Consensus 82 ~~~~~~ll~~k~~~l~~~i~~L~~~~~~L~~~~~ 115 (144)
T PRK13752 82 CEEASSLAEHKLKDVREKMADLARMEAVLSELVC 115 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777777777777666666655443
No 206
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=32.89 E-value=61 Score=27.80 Aligned_cols=27 Identities=33% Similarity=0.553 Sum_probs=24.3
Q ss_pred cCceeeecCHHHHHHHHHHHHHHHHHH
Q 031977 89 GTGYFVEKTMDEGKDYCERKINLLKSN 115 (150)
Q Consensus 89 G~g~~vE~~~~eA~~~l~rr~~~l~~~ 115 (150)
|.|=|++.|.+||.+++.++++.+.+.
T Consensus 67 G~g~~~~iSWdeAl~~ia~~l~~~~~~ 93 (454)
T cd02755 67 GEGKFREASWDEALQYIASKLKEIKEQ 93 (454)
T ss_pred CCCeEEEeCHHHHHHHHHHHHHHHHHh
Confidence 688999999999999999999888764
No 207
>PRK08724 fliD flagellar capping protein; Validated
Probab=32.88 E-value=1.1e+02 Score=28.44 Aligned_cols=37 Identities=11% Similarity=0.017 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 106 ERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLK 142 (150)
Q Consensus 106 ~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~ 142 (150)
..|.+.|++.+..+..++..+..++..++..+..++.
T Consensus 616 ~~R~~sL~~~i~~l~dqi~~Le~Rle~~E~Ry~~QFt 652 (673)
T PRK08724 616 RTREKSLREQNYRLNDDQVALDRRMESLEKRTHAKFA 652 (673)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666667777777777777777766666655544
No 208
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=32.51 E-value=1.5e+02 Score=19.47 Aligned_cols=35 Identities=9% Similarity=0.073 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 106 ERKINLLKSNFDQLIEVATKKKTISDEAAVILQAK 140 (150)
Q Consensus 106 ~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~ 140 (150)
.+-++.+++.++.+++++..+..+.+.+....+..
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l 59 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNEL 59 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555444444433
No 209
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=32.48 E-value=1.9e+02 Score=22.58 Aligned_cols=40 Identities=18% Similarity=0.256 Sum_probs=31.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 7 GGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLE 46 (150)
Q Consensus 7 i~l~~l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~ 46 (150)
-++..+|+++|..........+..++..+..++..+..+.
T Consensus 73 ~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~ 112 (240)
T PF12795_consen 73 EILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQ 112 (240)
T ss_pred cCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999998888888888888887776655554
No 210
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=32.44 E-value=2e+02 Score=24.52 Aligned_cols=40 Identities=18% Similarity=0.162 Sum_probs=25.2
Q ss_pred HHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEE
Q 031977 48 ASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVD 87 (150)
Q Consensus 48 ~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~ 87 (150)
.++.|+.+....-...+.+|+.+++.+.|-+.+.-+|+=+
T Consensus 39 l~~~l~~~~~~~~~~~~~lPl~P~~~~~~i~~~~~~v~~S 78 (365)
T cd00894 39 LKQKLENLQNLNLPESFRVPYDPGLRAGALVIEKCKVMAS 78 (365)
T ss_pred HHHHHHHhhhccCCCCCCCCCCCceEEEEEEcCceEEEcc
Confidence 3444444432222357889999999999987766555543
No 211
>PF11819 DUF3338: Domain of unknown function (DUF3338); InterPro: IPR021774 This family of proteins are functionally uncharacterised. This family is found in eukaryotes. This presumed domain is about 130 amino acids in length.
Probab=32.27 E-value=1.8e+02 Score=21.50 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=38.7
Q ss_pred eEEEcC-CCeEEEEccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 75 PGTLDD-ARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAA 134 (150)
Q Consensus 75 ~g~i~~-~~~VlV~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~ 134 (150)
++.|.+ .+.++++=|+ .+.+........+...|+.....++..|..+..++..+.
T Consensus 4 k~~i~~~~sg~~l~sgs-----~~~~~~~~~~~e~~~~Lk~rk~~Lee~L~~kl~ELk~lC 59 (138)
T PF11819_consen 4 KGEISDTSSGSILSSGS-----KDSESEEAAKKERLRALKKRKQALEERLAQKLEELKKLC 59 (138)
T ss_pred ccceeecCCcceecCCC-----CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455654 3466777775 344445566678888888888888888888888887764
No 212
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.18 E-value=1.1e+02 Score=24.83 Aligned_cols=49 Identities=22% Similarity=0.392 Sum_probs=31.2
Q ss_pred CCceEEEecCC-ceeEeEE--EcCC-CeEE-EEcc-CceeeecCHHHHHHHHHHH
Q 031977 60 QGAKMLVPLTA-SLYVPGT--LDDA-RKVL-VDIG-TGYFVEKTMDEGKDYCERK 108 (150)
Q Consensus 60 ~~~eilvplg~-~~yv~g~--i~~~-~~Vl-V~lG-~g~~vE~~~~eA~~~l~rr 108 (150)
++.++.|.+|+ |.+.++- .... -.|+ |+.| .||+.+.+.++..+.+-++
T Consensus 32 ~~~D~vi~iGGDGT~L~a~~~~~~~~iPilGIN~G~lGFL~~~~~~~~~~~~~~~ 86 (259)
T PRK00561 32 DGADYLFVLGGDGFFVSTAANYNCAGCKVVGINTGHLGFYTSFNETDLDQNFANK 86 (259)
T ss_pred CCCCEEEEECCcHHHHHHHHHhcCCCCcEEEEecCCCccccccCHHHHHHHHHHH
Confidence 35688999986 5444331 1122 2344 7787 5999999999988733333
No 213
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=31.99 E-value=43 Score=28.13 Aligned_cols=26 Identities=12% Similarity=0.294 Sum_probs=22.9
Q ss_pred CceeeecCHHHHHHHHHHHHHHHHHH
Q 031977 90 TGYFVEKTMDEGKDYCERKINLLKSN 115 (150)
Q Consensus 90 ~g~~vE~~~~eA~~~l~rr~~~l~~~ 115 (150)
.|-|.+.|.+||.+++..|++.+.+.
T Consensus 63 ~g~~~~isWdeAl~~ia~~l~~i~~~ 88 (414)
T cd02772 63 DGQWQEVDWETALEYVAEGLSAIIKK 88 (414)
T ss_pred CCceEEecHHHHHHHHHHHHHHHHHh
Confidence 47799999999999999999888663
No 214
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=31.96 E-value=1.8e+02 Score=20.38 Aligned_cols=32 Identities=9% Similarity=0.193 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTI 129 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~ 129 (150)
.+++..++..++..++..+..++.....+...
T Consensus 77 ~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~ 108 (126)
T cd04785 77 CAEADAIARAHLADVRARIADLRRLEAELKRM 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554444444433
No 215
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=31.71 E-value=1.4e+02 Score=21.59 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=21.2
Q ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHH
Q 031977 93 FVEKTMDEGKDYCERKINLLKSNFDQL 119 (150)
Q Consensus 93 ~vE~~~~eA~~~l~rr~~~l~~~~~~l 119 (150)
+-|+..++|++++..|++.--...+.+
T Consensus 28 lpEFaT~~A~~yf~~kKe~~~G~F~~~ 54 (128)
T cd03199 28 LPEFATQSARDYFIEKKEKSIGSFDAL 54 (128)
T ss_pred CCccCCHHHHHHHHHHHHhhhCCHHHH
Confidence 678999999999999987665555444
No 216
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=31.69 E-value=1.6e+02 Score=19.71 Aligned_cols=34 Identities=6% Similarity=0.039 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 104 YCERKINLLKSNFDQLIEVATKKKTISDEAAVIL 137 (150)
Q Consensus 104 ~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i 137 (150)
....++..+++.++.++..+..+..+++.+...+
T Consensus 67 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 67 SDSPELKELEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666666666666666666666666555444
No 217
>PRK10884 SH3 domain-containing protein; Provisional
Probab=31.36 E-value=2.5e+02 Score=21.86 Aligned_cols=36 Identities=8% Similarity=-0.000 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 105 CERKINLLKSNFDQLIEVATKKKTISDEAAVILQAK 140 (150)
Q Consensus 105 l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~ 140 (150)
++.+-..|++++..++.++..++.+.+.....+...
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 172 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQ 172 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667777777777777776666666665554433
No 218
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=31.36 E-value=1.6e+02 Score=19.65 Aligned_cols=26 Identities=12% Similarity=0.095 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 106 ERKINLLKSNFDQLIEVATKKKTISD 131 (150)
Q Consensus 106 ~rr~~~l~~~~~~l~~~l~~~~~~~~ 131 (150)
.+.+...++.+..++..+..+..+.+
T Consensus 7 ~~eieK~k~Kiae~Q~rlK~Le~qk~ 32 (83)
T PF14193_consen 7 RAEIEKTKEKIAELQARLKELEAQKT 32 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 219
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=30.89 E-value=1.9e+02 Score=20.27 Aligned_cols=31 Identities=10% Similarity=0.170 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 99 DEGKDYCERKINLLKSNFDQLIEVATKKKTI 129 (150)
Q Consensus 99 ~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~ 129 (150)
++...++..++..++..+..++.....+...
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~ 108 (127)
T TIGR02044 78 ADVKARTLEKVAEIERKISELQSMRDQLEAL 108 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555544444444444433
No 220
>TIGR02164 torA trimethylamine-N-oxide reductase TorA. This very narrowly defined family represents TorA, part of a family of related molybdoenzymes that include biotin sulfoxide reductases, dimethyl sulfoxide reductases, and at least two different subfamilies of trimethylamine-N-oxide reductases. A single enzyme from the larger family may have more than one activity. TorA typically is located in the periplasm, has a Tat (twin-arginine translocation)-dependent signal sequence, and is encoded in a torCAD operon.
Probab=30.72 E-value=58 Score=30.38 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=24.7
Q ss_pred cCceeeecCHHHHHHHHHHHHHHHHHH
Q 031977 89 GTGYFVEKTMDEGKDYCERKINLLKSN 115 (150)
Q Consensus 89 G~g~~vE~~~~eA~~~l~rr~~~l~~~ 115 (150)
|.|=|.+.|.+||.+++..|++.+.+.
T Consensus 110 G~g~f~rISWDEAld~IA~kl~~i~~~ 136 (822)
T TIGR02164 110 GDNRFVRVTWDEALDLFYEELERVQKQ 136 (822)
T ss_pred CCCCEEEecHHHHHHHHHHHHHHHHHh
Confidence 688999999999999999999988765
No 221
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=30.68 E-value=2.1e+02 Score=24.16 Aligned_cols=30 Identities=17% Similarity=0.158 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTAT 42 (150)
Q Consensus 13 ~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~ 42 (150)
+...|.+..++|.+|+..|+.++..+....
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~ 87 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERLKSYEEAN 87 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666665555544443
No 222
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=30.64 E-value=62 Score=29.01 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=24.5
Q ss_pred cCceeeecCHHHHHHHHHHHHHHHHHH
Q 031977 89 GTGYFVEKTMDEGKDYCERKINLLKSN 115 (150)
Q Consensus 89 G~g~~vE~~~~eA~~~l~rr~~~l~~~ 115 (150)
|.|=|++.|.+||.+++.+|++.+.+.
T Consensus 71 G~g~~~~isWDeAl~~ia~kl~~i~~~ 97 (617)
T cd02770 71 GEGKFVRISWDEALDTIASELKRIIEK 97 (617)
T ss_pred CCCCeEEecHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999988764
No 223
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=30.62 E-value=2.7e+02 Score=21.89 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLK 142 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~ 142 (150)
....+.-...|+..++..++.+...+...+..+......+..+..
T Consensus 61 ~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 61 LKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777777777777777777777777777666665544
No 224
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=30.44 E-value=1.7e+02 Score=19.58 Aligned_cols=35 Identities=11% Similarity=0.181 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESA 48 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~ 48 (150)
++++....+...+.+..|.+.+..++.....|.+.
T Consensus 2 I~eme~~y~~~~~~l~~le~~l~~~~~~~~~~~~L 36 (90)
T PF14131_consen 2 IQEMEKIYNEWCELLEELEEALEKWQEAQPDYRKL 36 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777666666543
No 225
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=30.25 E-value=65 Score=20.17 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=23.2
Q ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 93 FVEKTMDEGKDYCERKINLLKSNFDQLIEVATKK 126 (150)
Q Consensus 93 ~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~ 126 (150)
|+++-+++-++--..++..+...+..+...|..+
T Consensus 32 F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 32 FVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666667777777777777777777777776654
No 226
>PRK00068 hypothetical protein; Validated
Probab=30.20 E-value=88 Score=30.23 Aligned_cols=45 Identities=22% Similarity=0.314 Sum_probs=36.9
Q ss_pred CceEEEecCCce------eEeEE----EcCCCeEEEEccCceeeecCHHHHHHHH
Q 031977 61 GAKMLVPLTASL------YVPGT----LDDARKVLVDIGTGYFVEKTMDEGKDYC 105 (150)
Q Consensus 61 ~~eilvplg~~~------yv~g~----i~~~~~VlV~lG~g~~vE~~~~eA~~~l 105 (150)
|.-+-+|+|+|+ |++++ ++.-.+|+|.-|..+-.+-|+++|.+-+
T Consensus 830 GNLLvlPi~~~lLYVePvYlqa~~~~~~P~L~rVivs~g~~v~~~~TL~eAL~~l 884 (970)
T PRK00068 830 GNLLTLPVGGSLLYVEPVYLRAGGQNSYPELKRVLVSYNDKVGYAPTIREALTQL 884 (970)
T ss_pred cceEEEEeCCeeEEEEeEEEecCCCCCCceeEEEEEEECCEeEeccCHHHHHHHH
Confidence 555667999876 55653 5566799999999999999999999887
No 227
>PRK02509 hypothetical protein; Provisional
Probab=30.20 E-value=79 Score=30.51 Aligned_cols=45 Identities=22% Similarity=0.437 Sum_probs=35.2
Q ss_pred CceEEEecCCce------eEeE---EEcCCCeEEEEccCceeeecCHHHHHHHH
Q 031977 61 GAKMLVPLTASL------YVPG---TLDDARKVLVDIGTGYFVEKTMDEGKDYC 105 (150)
Q Consensus 61 ~~eilvplg~~~------yv~g---~i~~~~~VlV~lG~g~~vE~~~~eA~~~l 105 (150)
|.-.-+|+|.|+ |++| .++.-.+|+|.-|..+-++-|+++|.+-+
T Consensus 902 GNLLviPI~~sLLYVEPvYlqA~~~~lP~L~RVIVs~g~~vvm~~TL~eAL~~l 955 (973)
T PRK02509 902 GNLLVIPIEQSLLYVEPLYLEAEQNSLPTLARVIVAYENRIVMAPTLEEALQAI 955 (973)
T ss_pred cceEEEEeCCeeEEEeeEEEecCCCCCCeeEEEEEEECCEEEEccCHHHHHHHH
Confidence 445567999876 5554 34455699999999999999999998754
No 228
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.19 E-value=59 Score=21.30 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTAT 42 (150)
Q Consensus 11 ~l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~ 42 (150)
.+-+++|..-.++|.++++..+.+...|...-
T Consensus 24 QmEieELKEknn~l~~e~q~~q~~reaL~~en 55 (79)
T COG3074 24 QMEIEELKEKNNSLSQEVQNAQHQREALEREN 55 (79)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666665555555544433
No 229
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=30.08 E-value=2e+02 Score=20.26 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=31.3
Q ss_pred HHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceeeecCH
Q 031977 46 ESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTM 98 (150)
Q Consensus 46 ~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE~~~ 98 (150)
++-.+.++.|++ |.++ =.++|+|-.-.=.+.+.|.|.++.|+.+.+..
T Consensus 30 K~~~~m~~~Lk~---GD~V--vT~gGi~G~V~~I~d~~v~leia~gv~i~~~r 77 (109)
T PRK05886 30 QATIDLHESLQP---GDRV--HTTSGLQATIVGITDDTVDLEIAPGVVTTWMK 77 (109)
T ss_pred HHHHHHHHhcCC---CCEE--EECCCeEEEEEEEeCCEEEEEECCCeEEEEEh
Confidence 344566777876 3344 34677775533234579999999998887654
No 230
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=30.05 E-value=1.7e+02 Score=19.41 Aligned_cols=49 Identities=10% Similarity=0.129 Sum_probs=32.3
Q ss_pred HHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceeeecCHH
Q 031977 46 ESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMD 99 (150)
Q Consensus 46 ~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE~~~~ 99 (150)
++-.+.+++|++ |.+ |=.++|+|-.-.=.+.+.+.|.++.|..+..+..
T Consensus 29 k~~~~m~~~L~~---Gd~--VvT~gGi~G~V~~i~d~~v~vei~~g~~i~~~r~ 77 (84)
T TIGR00739 29 KAHKKLIESLKK---GDK--VLTIGGIIGTVTKIAENTIVIELNDNTEITFSKN 77 (84)
T ss_pred HHHHHHHHhCCC---CCE--EEECCCeEEEEEEEeCCEEEEEECCCeEEEEEhH
Confidence 344566777776 334 4456778755443356789999999988877654
No 231
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=29.88 E-value=1.3e+02 Score=22.14 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031977 21 KEQTDLEVNLLQDSLNNIR 39 (150)
Q Consensus 21 ~~ql~~e~~~l~~~~~~L~ 39 (150)
...+..++..|...+..|.
T Consensus 88 l~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 88 LAELKKEVKSLEAELASLS 106 (169)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344444445555544443
No 232
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.77 E-value=3.2e+02 Score=23.32 Aligned_cols=20 Identities=5% Similarity=0.197 Sum_probs=14.0
Q ss_pred ceeeecCHHHHHHHHHHHHH
Q 031977 91 GYFVEKTMDEGKDYCERKIN 110 (150)
Q Consensus 91 g~~vE~~~~eA~~~l~rr~~ 110 (150)
+|--+..+++|+-++++-..
T Consensus 308 ~~A~d~aieD~i~~L~~~~r 327 (365)
T KOG2391|consen 308 CYALDLAIEDAIYSLGKSLR 327 (365)
T ss_pred hhhhhhHHHHHHHHHHHHHh
Confidence 56667777888878887443
No 233
>PF10148 SCHIP-1: Schwannomin-interacting protein 1; InterPro: IPR015649 SCHIP-1 is a coiled-coil protein that specifically associates with schwannomin in vitro and in vivo. The product of the neurofibromatosis type 2 (NF2) tumour suppressor gene, known as schwannomin or merlin, is involved in NF2-associated and sporadic schwannomas and meningiomas. It is closely related to the ezrin-radixin-moesin family members, which link membrane proteins to the cytoskeleton. Association with SCHIP-1 can be observed only with some naturally occurring mutants of schwannomin, or a schwannomin spliced isoform lacking exons 2 and 3, but not with the schwannomin isoform exhibiting growth-suppressive activity []. This entry consists of mammalian SCHIP-1 proteins from Mus musculus (Mouse) and Homo sapiens (Human).
Probab=29.68 E-value=1.4e+02 Score=24.12 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=27.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 7 GGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTAT 42 (150)
Q Consensus 7 i~l~~l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~ 42 (150)
..|+.++++||.-+.+.|+..++.+...+-.+-...
T Consensus 168 ~~L~~~~~~qLq~i~~~l~~~i~~ln~~Lv~~L~~R 203 (238)
T PF10148_consen 168 QDLTKMNVPQLQVIVNDLHEQIEALNEELVQLLLER 203 (238)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 568889999999999998888887766555554433
No 234
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=29.59 E-value=1.7e+02 Score=19.24 Aligned_cols=39 Identities=8% Similarity=0.085 Sum_probs=26.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 7 GGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRL 45 (150)
Q Consensus 7 i~l~~l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~ 45 (150)
...+.-+-..|..+...++-|+..++-.+..|+.....+
T Consensus 5 ~r~s~~p~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~ 43 (79)
T PF06657_consen 5 SRPSQSPGEALSEVLKALQDEFGHMKMEHQELQDEYKQM 43 (79)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555567788888888888888877666665444333
No 235
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=29.58 E-value=2e+02 Score=20.00 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=30.5
Q ss_pred ceeeecCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 91 GYFVEKTMDEGKDYC-ERKINLLKSNFDQLIEVATKKKTISDEAAVILQ 138 (150)
Q Consensus 91 g~~vE~~~~eA~~~l-~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~ 138 (150)
|.|-++-...=-.|+ ++..+.|++..+++.+++...+++++.++..|+
T Consensus 52 ~~f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 52 GAFGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445555444333444 444566777777777777778888888887764
No 236
>PRK09795 aminopeptidase; Provisional
Probab=29.47 E-value=2.5e+02 Score=23.21 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=24.3
Q ss_pred CceEEEecCCceeEe------EEEcCCCeEEEEccC---ceeeecC
Q 031977 61 GAKMLVPLTASLYVP------GTLDDARKVLVDIGT---GYFVEKT 97 (150)
Q Consensus 61 ~~eilvplg~~~yv~------g~i~~~~~VlV~lG~---g~~vE~~ 97 (150)
.+...|.-|.....| -.+.+.+-|++|+|+ ||+..++
T Consensus 180 ~f~~iv~sG~~~~~ph~~~~~~~l~~gd~v~~d~g~~~~gY~sd~t 225 (361)
T PRK09795 180 SFDTIVASGWRGALPHGKASDKIVAAGEFVTLDFGALYQGYCSDMT 225 (361)
T ss_pred CCCeEEEEeccccccCCCCCCceecCCCEEEEEeccccCCEeecce
Confidence 345667777544333 356788899999996 6666433
No 237
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=29.42 E-value=1.1e+02 Score=23.62 Aligned_cols=31 Identities=10% Similarity=0.165 Sum_probs=21.6
Q ss_pred eEeEEEc--CCCeEEEEccC-ceeeecCHHHHHH
Q 031977 73 YVPGTLD--DARKVLVDIGT-GYFVEKTMDEGKD 103 (150)
Q Consensus 73 yv~g~i~--~~~~VlV~lG~-g~~vE~~~~eA~~ 103 (150)
|++|+|. .++.|++++|. ||-|-.|......
T Consensus 4 ~l~G~v~~~~~~~vvi~~~GvGY~v~~s~~~~~~ 37 (194)
T PRK14605 4 SLNGILEASGKDWAVINVSGVGFRCYMPATSPAL 37 (194)
T ss_pred eEEEEEEEecCCEEEEEECCEEEEEEeCHHHHHh
Confidence 6777775 46778888764 8888877655543
No 238
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=29.42 E-value=3.2e+02 Score=22.61 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 99 DEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVIL 137 (150)
Q Consensus 99 ~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i 137 (150)
++..+-+...++.++...+.+.+.+..+..+...+.+.+
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el 80 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQEL 80 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444443
No 239
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=29.29 E-value=2.1e+02 Score=20.37 Aligned_cols=39 Identities=8% Similarity=0.092 Sum_probs=21.2
Q ss_pred cCHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 96 KTMDEGKDYCER---------KINLLKSNFDQLIEVATKKKTISDEAA 134 (150)
Q Consensus 96 ~~~~eA~~~l~r---------r~~~l~~~~~~l~~~l~~~~~~~~~v~ 134 (150)
+|+++..+++.. ....++..+..+...+.++......+.
T Consensus 58 fsL~eI~~ll~~~~~~~~~~~~~~~l~~k~~~i~~~i~~L~~~~~~L~ 105 (131)
T cd04786 58 FSLDEIRQLLPADASNWQHDELLAALERKVADIEALEARLAQNKAQLL 105 (131)
T ss_pred CCHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888888862 233444555555555444444444433
No 240
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=29.24 E-value=1.1e+02 Score=20.77 Aligned_cols=11 Identities=9% Similarity=-0.088 Sum_probs=5.9
Q ss_pred cCHHHHHHHHH
Q 031977 96 KTMDEGKDYCE 106 (150)
Q Consensus 96 ~~~~eA~~~l~ 106 (150)
+|+++-.++++
T Consensus 56 ~sL~eI~~~l~ 66 (107)
T cd04777 56 FSLIEIQKIFS 66 (107)
T ss_pred CCHHHHHHHHH
Confidence 45555555554
No 241
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=29.10 E-value=37 Score=28.21 Aligned_cols=31 Identities=26% Similarity=0.274 Sum_probs=26.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 7 GGMEKMSVEQLKAIKEQTDLEVNLLQDSLNN 37 (150)
Q Consensus 7 i~l~~l~~~qL~~~~~ql~~e~~~l~~~~~~ 37 (150)
++..+.+.++|..+-+.+-++++.++.++..
T Consensus 90 l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~ 120 (318)
T PF12725_consen 90 LETEEYSTEELKELTEYLIEKANELREQITE 120 (318)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6667899999999999999999999887765
No 242
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=29.01 E-value=2.3e+02 Score=24.06 Aligned_cols=45 Identities=9% Similarity=0.140 Sum_probs=32.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 96 KTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAK 140 (150)
Q Consensus 96 ~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~ 140 (150)
..+..+.+-+..|-++++.+++.+-..+...+.++..+....++.
T Consensus 248 ~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~ 292 (359)
T PF10498_consen 248 QDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQA 292 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888887777777777776665555443
No 243
>PRK14127 cell division protein GpsB; Provisional
Probab=29.00 E-value=2.1e+02 Score=20.15 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAST 50 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e 50 (150)
++++..-++.+..++..|..++..|+..+.++..-..
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5666777777777888888888888888877776544
No 244
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=29.00 E-value=1.5e+02 Score=20.66 Aligned_cols=41 Identities=17% Similarity=0.334 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 9 MEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAS 49 (150)
Q Consensus 9 l~~l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~ 49 (150)
+.+++++=|...++.|...+..+...+..+.....++....
T Consensus 63 LaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~ 103 (118)
T PF13815_consen 63 LAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKL 103 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666777777777777777776666666655443
No 245
>PRK01156 chromosome segregation protein; Provisional
Probab=28.97 E-value=4.9e+02 Score=24.42 Aligned_cols=40 Identities=5% Similarity=-0.085 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 99 DEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQ 138 (150)
Q Consensus 99 ~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~ 138 (150)
.+.+.-+..++..+++.+..+...+..+...+..+...+.
T Consensus 468 ~e~i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~~ 507 (895)
T PRK01156 468 NHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKE 507 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446666666777777777776666666666555544443
No 246
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=28.88 E-value=2.1e+02 Score=20.19 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=21.5
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 95 EKTMDEGKDYCERKINLLKSNFDQLIEV 122 (150)
Q Consensus 95 E~~~~eA~~~l~rr~~~l~~~~~~l~~~ 122 (150)
|++.++|+.|++.=++..+..-..+.+.
T Consensus 38 eln~eEak~~vddl~~q~k~~~~e~e~K 65 (108)
T COG3937 38 ELNAEEAKRFVDDLLRQAKEAQGELEEK 65 (108)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 5789999999988887777666655554
No 247
>cd00279 YlxR Ylxr homologs; group of conserved hypothetical bacterial proteins of unknown function; structure revealed putative RNA binding cleft; proteins are encoded by an operon that includes other proteins involved in transcription and/or translation
Probab=28.81 E-value=1.3e+02 Score=19.67 Aligned_cols=33 Identities=15% Similarity=0.081 Sum_probs=22.0
Q ss_pred eEEEcCCCeEEEEc-----cCceeeecCHHHHHHHHHH
Q 031977 75 PGTLDDARKVLVDI-----GTGYFVEKTMDEGKDYCER 107 (150)
Q Consensus 75 ~g~i~~~~~VlV~l-----G~g~~vE~~~~eA~~~l~r 107 (150)
+-...+.+.|.+|. |-|+||-.+.+-......+
T Consensus 19 R~v~~~~g~i~~D~~~k~~GRGaYvc~~~~c~~~a~kk 56 (79)
T cd00279 19 RFVAGPEGEVVPDPTGKLPGRGAYVCADRECIEKAKKK 56 (79)
T ss_pred EEEEcCCCeEEECCCCCCCCCeEEEcCCHHHHHHHHHh
Confidence 33334457888887 9999999887654444433
No 248
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=28.73 E-value=1.5e+02 Score=18.43 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 108 KINLLKSNFDQLIEVATKKKTISDEAAVILQ 138 (150)
Q Consensus 108 r~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~ 138 (150)
+++.|...+..|...+..+...+..+...+.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~ 34 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555554444443
No 249
>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species. The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.
Probab=28.73 E-value=1.1e+02 Score=20.23 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031977 19 AIKEQTDLEVNLLQDSLNNIR 39 (150)
Q Consensus 19 ~~~~ql~~e~~~l~~~~~~L~ 39 (150)
.+..|++++++.|...++.|+
T Consensus 50 ~~~~QideeV~~LKe~IdaLN 70 (79)
T PF10398_consen 50 AFLAQIDEEVEKLKEHIDALN 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356667776666666665555
No 250
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=28.64 E-value=1.5e+02 Score=19.94 Aligned_cols=36 Identities=22% Similarity=0.205 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 107 RKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLK 142 (150)
Q Consensus 107 rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~ 142 (150)
.....++..++.+..-+..+.+.-..|...|+..+.
T Consensus 26 ~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLe 61 (83)
T PF03670_consen 26 EEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLE 61 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 334444444444444444444444444444444443
No 251
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=28.56 E-value=2.4e+02 Score=20.62 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 10 EKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLES 47 (150)
Q Consensus 10 ~~l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~ 47 (150)
..++.++|...+.+++.++.....++..|+..+.+...
T Consensus 18 ~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~ 55 (160)
T PF13094_consen 18 DSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEA 55 (160)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889988888888888666666666665555443
No 252
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.47 E-value=4.7e+02 Score=24.06 Aligned_cols=46 Identities=9% Similarity=0.146 Sum_probs=35.2
Q ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 94 VEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQA 139 (150)
Q Consensus 94 vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~ 139 (150)
+|+++..-..++.+....|...++.+.....+-+.++..+.+.+..
T Consensus 656 AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K 701 (741)
T KOG4460|consen 656 AERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPK 701 (741)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 5777877778888888888888888888877777777777666543
No 253
>PHA02751 hypothetical protein; Provisional
Probab=28.43 E-value=1.7e+02 Score=22.65 Aligned_cols=68 Identities=16% Similarity=0.106 Sum_probs=52.2
Q ss_pred eEEEecCCceeEeEEEcCCCeEEEEccCce----------eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 63 KMLVPLTASLYVPGTLDDARKVLVDIGTGY----------FVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTIS 130 (150)
Q Consensus 63 eilvplg~~~yv~g~i~~~~~VlV~lG~g~----------~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~ 130 (150)
+-.|.||..+|+-|-+...|-+.=++|--| +.|+...+.-+.+.-++...++.+.++...+++.....
T Consensus 124 dnvvglgR~CvIfGalVrddG~~khV~ii~eeeYleWlRam~ek~~adSweVim~~Lqi~ee~ln~l~eeLak~adkS 201 (233)
T PHA02751 124 DNVVGLGRLCVIFGALVRDDGHAKHVGIITEEEYLEWLRAMAEKNLADSWEVIMIPLQIHEELLNELEEELAKCADKS 201 (233)
T ss_pred ccccccceEEEEEeeEEeecCeeeeccccCHHHHHHHHHHHHhcCcccchhheeeeHHHHHHHHHHHHHHHHHHhhhh
Confidence 345788889999999988888888888533 46777777777777788888888888888887765543
No 254
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=28.36 E-value=1.6e+02 Score=24.42 Aligned_cols=56 Identities=16% Similarity=0.158 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-------CCCceEEEecCCc
Q 031977 16 QLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLR-------PQGAKMLVPLTAS 71 (150)
Q Consensus 16 qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~-------~~~~eilvplg~~ 71 (150)
.|....+++++++..++.++..++..+.++.+-++.+...+.. -....++++-+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (364)
T TIGR01242 3 ELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSPPLIVGTVLEVLDDNRVVVKSSTG 65 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEecCCEEEEEeCCC
Confidence 3445667777777777777777777777777666666554321 1233556666544
No 255
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=28.31 E-value=2.1e+02 Score=21.75 Aligned_cols=34 Identities=15% Similarity=0.126 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 97 TMDEGKDYCERKINLLKSNFDQLIEVATKKKTIS 130 (150)
Q Consensus 97 ~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~ 130 (150)
+.++-.+.+..+.+.+...++.++..++.+...+
T Consensus 82 t~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~v 115 (175)
T PRK13182 82 ISSVDFEQLEAQLNTITRRLDELERQLQQKADDV 115 (175)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4556677777777777777777777766665433
No 256
>PHA02107 hypothetical protein
Probab=28.16 E-value=2.1e+02 Score=21.92 Aligned_cols=51 Identities=8% Similarity=0.053 Sum_probs=28.0
Q ss_pred EccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 87 DIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVIL 137 (150)
Q Consensus 87 ~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i 137 (150)
.+|-++|.--..-.|+..+.--..+-...+.++..++.++++..+.+++-|
T Consensus 157 ~~~~~IFF~~~~~KAi~~iRG~~~F~S~Ri~EID~EI~~LQA~RKEiEDN~ 207 (216)
T PHA02107 157 PDGQNIFFAPETMKAVQLVRGVFHFASVRISEIDEEIKELQARRKEIEDNI 207 (216)
T ss_pred cccceeeecHHHHHHHHHHHHHhhhhhhhHhHHhHHHHHHHHHHHHHHHHH
Confidence 466666665556666666555555555555555555555555555444433
No 257
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=28.13 E-value=3.6e+02 Score=23.23 Aligned_cols=29 Identities=10% Similarity=0.260 Sum_probs=15.9
Q ss_pred ceEEEecCCceeEeEEEcCCCeEEEE-ccC
Q 031977 62 AKMLVPLTASLYVPGTLDDARKVLVD-IGT 90 (150)
Q Consensus 62 ~eilvplg~~~yv~g~i~~~~~VlV~-lG~ 90 (150)
..+.+.=+.|..+-|.+...+.|.+. +|+
T Consensus 286 ~~i~v~~~~g~IiGG~i~a~~~i~a~~lGs 315 (451)
T PF03961_consen 286 GSIIVNGGKGRIIGGEIKAGNGIEAKSLGS 315 (451)
T ss_pred CeEEEeCCCCEEECcEEEEcccEEEEeecc
Confidence 45556444566666666655555443 444
No 258
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=28.05 E-value=73 Score=29.36 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=23.5
Q ss_pred cCceeeecCHHHHHHHHHHHHHHHHH
Q 031977 89 GTGYFVEKTMDEGKDYCERKINLLKS 114 (150)
Q Consensus 89 G~g~~vE~~~~eA~~~l~rr~~~l~~ 114 (150)
|.|=|++.|.+||.+++.+|++.+.+
T Consensus 66 G~g~f~~ISWDEAld~IA~kL~~i~~ 91 (679)
T cd02763 66 GSGQFEEIEWEEAFSIATKRLKAARA 91 (679)
T ss_pred CCCceEEeCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999988754
No 259
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=27.89 E-value=1.2e+02 Score=19.40 Aligned_cols=18 Identities=33% Similarity=0.063 Sum_probs=10.8
Q ss_pred CceeeecCHHHHHHHHHH
Q 031977 90 TGYFVEKTMDEGKDYCER 107 (150)
Q Consensus 90 ~g~~vE~~~~eA~~~l~r 107 (150)
++=++-++.++-.++..+
T Consensus 68 ~k~~~rf~t~~l~~L~~~ 85 (92)
T PF05190_consen 68 TKSGVRFTTPELKELNEE 85 (92)
T ss_dssp ESSEEEEECHHHHHHHHH
T ss_pred EcCcEEEECHHHHHHHHH
Confidence 555566777766555443
No 260
>PF14962 AIF-MLS: Mitochondria Localisation Sequence; PDB: 1M6I_A.
Probab=27.86 E-value=20 Score=27.62 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=0.0
Q ss_pred ccCceeeecCHHHHHHHHHHHHHHHHHHH
Q 031977 88 IGTGYFVEKTMDEGKDYCERKINLLKSNF 116 (150)
Q Consensus 88 lG~g~~vE~~~~eA~~~l~rr~~~l~~~~ 116 (150)
+|+|||+=+|+.+=.+-++.|+..|...-
T Consensus 57 ~gag~YaYkTv~~dq~Ry~eRi~~l~~r~ 85 (180)
T PF14962_consen 57 SGAGYYAYKTVKSDQARYNERISELKERP 85 (180)
T ss_dssp -----------------------------
T ss_pred EeeEEEEEEeecchhHHHHHHHHHHhhcC
Confidence 58999999999999999999999886544
No 261
>PF13814 Replic_Relax: Replication-relaxation
Probab=27.78 E-value=1e+02 Score=22.74 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=32.8
Q ss_pred cCCCeEEEEccCc----eeeecCH-HHHHHHHHHHHHHHHHHHHHH
Q 031977 79 DDARKVLVDIGTG----YFVEKTM-DEGKDYCERKINLLKSNFDQL 119 (150)
Q Consensus 79 ~~~~~VlV~lG~g----~~vE~~~-~eA~~~l~rr~~~l~~~~~~l 119 (150)
.-||-++++-+.+ ||||.+. -+....+.+|++...+-....
T Consensus 136 ~~PDa~~~~~~~~~~~~~fiEvD~~te~~~~l~~Kl~~Y~~~~~~~ 181 (191)
T PF13814_consen 136 LRPDAVFRWRDGDREVRFFIEVDRGTESPARLRRKLERYRRYLRSG 181 (191)
T ss_pred EeCCEEEEEecCCeEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 3467788888887 9999998 788888888888887766654
No 262
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=27.77 E-value=2.2e+02 Score=20.11 Aligned_cols=31 Identities=6% Similarity=0.224 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031977 25 DLEVNLLQDSLNNIRTATSRLESASTALHDL 55 (150)
Q Consensus 25 ~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L 55 (150)
++.++.+..++..|+.....+...+......
T Consensus 85 ~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~ 115 (133)
T cd04787 85 EQRLAETERRIKELLKLRDRMQQAVSQWQQM 115 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444444444555544444444444444333
No 263
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=27.62 E-value=4.5e+02 Score=23.59 Aligned_cols=52 Identities=10% Similarity=-0.010 Sum_probs=43.3
Q ss_pred EEEEccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 84 VLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAV 135 (150)
Q Consensus 84 VlV~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~ 135 (150)
.....|.++..|.+...++..|+..+..+.+++....+....+.+.+..-..
T Consensus 431 ~~~~~~~~~~~e~sr~k~~~~Lqq~~~~l~~~L~~a~~d~~~i~e~~~~el~ 482 (524)
T COG5391 431 KLSYKLRDFVQEKSRSKSIESLQQDKEKLEEQLAIAEKDAQEINEELKNELK 482 (524)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667888999999999999999999999999999998888877765433
No 264
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=27.61 E-value=1e+02 Score=23.98 Aligned_cols=30 Identities=3% Similarity=-0.107 Sum_probs=22.2
Q ss_pred eeEeEEEc--CCCeEEEEccC-ceeeecCHHHH
Q 031977 72 LYVPGTLD--DARKVLVDIGT-GYFVEKTMDEG 101 (150)
Q Consensus 72 ~yv~g~i~--~~~~VlV~lG~-g~~vE~~~~eA 101 (150)
.|++|+|. .++.|+|++|. ||-|-.|..-.
T Consensus 3 ~~l~G~v~~~~~~~vvidv~GVGY~v~vs~~~~ 35 (196)
T PRK13901 3 NKIYGKIIEKKESSIVIMATPFEFELLVSSFCL 35 (196)
T ss_pred cEEEEEEEEEeCCEEEEEeCCEEEEEEecHHHH
Confidence 47888885 47788888874 88888876543
No 265
>PRK08724 fliD flagellar capping protein; Validated
Probab=27.60 E-value=1.8e+02 Score=26.94 Aligned_cols=47 Identities=6% Similarity=-0.038 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 031977 99 DEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLA 145 (150)
Q Consensus 99 ~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~ 145 (150)
....+-|+++++.+.++++.++..+..+..++..=-..|+..+.+++
T Consensus 616 ~~R~~sL~~~i~~l~dqi~~Le~Rle~~E~Ry~~QFtAMD~~msqMn 662 (673)
T PRK08724 616 RTREKSLREQNYRLNDDQVALDRRMESLEKRTHAKFAAMQDATGKMQ 662 (673)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677777777777777777777666665544444444444444
No 266
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=27.54 E-value=1.9e+02 Score=21.49 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=32.0
Q ss_pred CceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 90 TGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQA 139 (150)
Q Consensus 90 ~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~ 139 (150)
..||+-+|+ ..+++.|.+.+.+.++.......+...........|..
T Consensus 36 L~~fl~kpI---~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~ 82 (174)
T PRK07352 36 LYYFGRGFL---GKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQ 82 (174)
T ss_pred HHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777775 67788888888888777776666665555555555543
No 267
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=27.44 E-value=1.3e+02 Score=23.28 Aligned_cols=31 Identities=13% Similarity=0.274 Sum_probs=22.8
Q ss_pred eeEeEEEc--CCCeEEEEccC-ceeeecCHHHHH
Q 031977 72 LYVPGTLD--DARKVLVDIGT-GYFVEKTMDEGK 102 (150)
Q Consensus 72 ~yv~g~i~--~~~~VlV~lG~-g~~vE~~~~eA~ 102 (150)
.|++|+|. .++.|+|++|. ||-|-.|.....
T Consensus 3 ~~i~G~i~~~~~~~viie~~GvGY~v~vs~~~~~ 36 (195)
T PRK14604 3 ASIRGIIQSIGNDHLIVETGGVGLLIYAPRSVLA 36 (195)
T ss_pred ceEEEEEEEEcCCEEEEEECCEEEEEEeCHHHHH
Confidence 37888886 47789998874 888888755443
No 268
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=27.42 E-value=2.4e+02 Score=20.32 Aligned_cols=39 Identities=15% Similarity=0.208 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 104 YCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLK 142 (150)
Q Consensus 104 ~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~ 142 (150)
.+..+++.++..+..++..+..++.-...+....+.++.
T Consensus 78 ~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~~~~~~~~ 116 (134)
T cd04779 78 EVAQEVQLVCDQIDGLEHRLKQLKPIASQTDRAQRMKMT 116 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777777777777777666666665555553
No 269
>PRK09039 hypothetical protein; Validated
Probab=27.14 E-value=3.7e+02 Score=22.47 Aligned_cols=30 Identities=10% Similarity=0.059 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKKK 127 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~ 127 (150)
++.+++..+.+....+.+++.+...|....
T Consensus 156 le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 156 LEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666655555543
No 270
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=27.12 E-value=2e+02 Score=23.71 Aligned_cols=30 Identities=17% Similarity=0.364 Sum_probs=22.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 8 GMEKMSVEQLKAIKEQTDLEVNLLQDSLNN 37 (150)
Q Consensus 8 ~l~~l~~~qL~~~~~ql~~e~~~l~~~~~~ 37 (150)
.++.|++++|.++...|..+++..-..+..
T Consensus 215 eL~~Mt~~EL~qL~~~L~~qIq~vfeeLt~ 244 (285)
T PF06937_consen 215 ELNSMTLDELKQLNEKLLQQIQDVFEELTQ 244 (285)
T ss_pred HhhhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999998777666444443
No 271
>PRK15002 redox-sensitivie transcriptional activator SoxR; Provisional
Probab=26.97 E-value=2.6e+02 Score=20.64 Aligned_cols=42 Identities=10% Similarity=-0.067 Sum_probs=22.6
Q ss_pred cCHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 96 KTMDEGKDYCE-----------RKINLLKSNFDQLIEVATKKKTISDEAAVIL 137 (150)
Q Consensus 96 ~~~~eA~~~l~-----------rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i 137 (150)
+|+++-.++++ .....+.+.+..+...+.+++.....+...+
T Consensus 68 ~sL~eIk~ll~~~~~~~~~~~~~~~~ll~~k~~~l~~~I~~L~~~~~~L~~~i 120 (154)
T PRK15002 68 IPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCI 120 (154)
T ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666654 2344455555555555555555555554443
No 272
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=26.97 E-value=4.8e+02 Score=23.65 Aligned_cols=36 Identities=11% Similarity=0.015 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEA 133 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v 133 (150)
..++.+-++.|++.+++.++.+++++.+........
T Consensus 213 p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~ 248 (646)
T PRK05771 213 PSELIREIKEELEEIEKERESLLEELKELAKKYLEE 248 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666777777777777777777776666654433
No 273
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=26.68 E-value=1.2e+02 Score=23.34 Aligned_cols=31 Identities=16% Similarity=0.345 Sum_probs=22.0
Q ss_pred eeEeEEEc--CCCeEEEEccC-ceeeecCHHHHH
Q 031977 72 LYVPGTLD--DARKVLVDIGT-GYFVEKTMDEGK 102 (150)
Q Consensus 72 ~yv~g~i~--~~~~VlV~lG~-g~~vE~~~~eA~ 102 (150)
.|++|+|. .++.|+|++|. ||-|-.|.....
T Consensus 3 ~~l~G~v~~~~~~~vvi~v~GvGY~v~v~~~~~~ 36 (191)
T TIGR00084 3 GFLFGKVIEVSKPKIIIEVNGVGYELQVPMTCAY 36 (191)
T ss_pred ceEEEEEEEEcCCEEEEEECCEEEEEEecHHHHH
Confidence 37778875 47788888874 888877765543
No 274
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=26.43 E-value=1.9e+02 Score=21.16 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTAL 52 (150)
Q Consensus 13 ~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l 52 (150)
.-+++..+..++..-++.++++..++......+..+..+|
T Consensus 120 ~d~el~~l~~ql~~hl~s~~~n~~~l~~~~~~ie~~~~~L 159 (160)
T PF13094_consen 120 CDEELLPLLKQLNKHLESMQNNLQQLKGLLEAIERSYAAL 159 (160)
T ss_pred chHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhc
Confidence 3679999999999999999998888887777777776654
No 275
>cd01716 Hfq Hfq, an abundant, ubiquitous RNA-binding protein, functions as a pleiotrophic regulator of RNA metabolism in prokaryotes, required for transcription of some transcripts and degradation of others. Hfq binds small RNA molecules called riboregulators that modulate the stability or translation efficiency of RNA transcripts. Hfq binds preferentially to unstructured A/U-rich RNA sequences and is similar to the eukaryotic Sm proteins in both sequence and structure. Hfq forms a homo-hexameric ring similar to the heptameric ring of the Sm proteins.
Probab=26.41 E-value=92 Score=19.68 Aligned_cols=31 Identities=10% Similarity=0.189 Sum_probs=25.3
Q ss_pred CCceEEEecCCceeEeEEEcCCCeEEEEccC
Q 031977 60 QGAKMLVPLTASLYVPGTLDDARKVLVDIGT 90 (150)
Q Consensus 60 ~~~eilvplg~~~yv~g~i~~~~~VlV~lG~ 90 (150)
+..++.|=|-+|+-++|.|..-|+..|-+..
T Consensus 10 ~~~~Vtv~L~NG~~l~G~I~~fD~ftVll~~ 40 (61)
T cd01716 10 EKIPVTIYLVNGVQLKGQIESFDNFTVLLES 40 (61)
T ss_pred cCCcEEEEEeCCcEEEEEEEEEcceEEEEEE
Confidence 4568889999999999999987776666653
No 276
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=26.36 E-value=55 Score=30.63 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=23.3
Q ss_pred cCceeeecCHHHHHHHHHHHHHHHHHH
Q 031977 89 GTGYFVEKTMDEGKDYCERKINLLKSN 115 (150)
Q Consensus 89 G~g~~vE~~~~eA~~~l~rr~~~l~~~ 115 (150)
|.|=|++.|.+||.+++..|++.+.+.
T Consensus 112 g~g~~~~iSWDeAl~~iA~kl~~i~~~ 138 (830)
T TIGR01706 112 KDGEFTPVSWDQAFDEMEEQFKRALKE 138 (830)
T ss_pred cCCCeeEcCHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999998887544
No 277
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=26.29 E-value=2e+02 Score=19.32 Aligned_cols=42 Identities=17% Similarity=0.326 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (150)
Q Consensus 12 l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~ 54 (150)
+|++++..+...-. ..+.+..++..+...+.++......|..
T Consensus 58 ~~l~ei~~~~~~~~-~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 99 (102)
T cd04775 58 LPLEEIAGCLAQPH-VQAILEERLQSLNREIQRLRQQQQVLAA 99 (102)
T ss_pred CCHHHHHHHHcCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555433211 2345556666666666666666655554
No 278
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=26.12 E-value=2.1e+02 Score=19.28 Aligned_cols=34 Identities=18% Similarity=0.386 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLE 46 (150)
Q Consensus 13 ~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~ 46 (150)
++++|.+-....+.+++.....+..|+.....+.
T Consensus 2 ~Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~ 35 (86)
T PF12958_consen 2 TLEELQAEIEKAEKKLEQAEHKIKQLENRKKKLE 35 (86)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888888888888888777664
No 279
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=26.02 E-value=3.6e+02 Score=21.95 Aligned_cols=10 Identities=20% Similarity=0.713 Sum_probs=7.2
Q ss_pred CCeEEEEccC
Q 031977 81 ARKVLVDIGT 90 (150)
Q Consensus 81 ~~~VlV~lG~ 90 (150)
.++++++.|.
T Consensus 131 ~~~ivId~Gs 140 (284)
T COG1792 131 SQTIVIDKGS 140 (284)
T ss_pred hcEEEEecCc
Confidence 4577888885
No 280
>PF05626 DUF790: Protein of unknown function (DUF790); InterPro: IPR008508 This family consists of several hypothetical bacterial and archaeal proteins whose functions have not been experimentally verified. Computational analysis of sequence, predicted structure and genomic context suggests that these proteins may be endonucleases involved in either restriction-modification and/or DNA excision repair [].
Probab=25.97 E-value=84 Score=26.97 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=33.9
Q ss_pred eEEEecCCceeEeEEEcCCCeEEEEccCceeeecCHHHHHHHHHHHHHHHHH
Q 031977 63 KMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKS 114 (150)
Q Consensus 63 eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE~~~~eA~~~l~rr~~~l~~ 114 (150)
.-.+++|+++|+| |-.+.+=|--||+|.=--=.-+|+.||++.+.+
T Consensus 292 p~~l~~g~~v~IP------DF~~~~~g~~vylEIvGfWtpeYL~rKl~kl~~ 337 (379)
T PF05626_consen 292 PEPLVLGGSVMIP------DFRFEHDGRRVYLEIVGFWTPEYLERKLEKLRK 337 (379)
T ss_pred CcceecCCeEEcc------ceeEEECCEEEEEEEecCCCHHHHHHHHHHHhh
Confidence 3468899888875 455566667888887666667899999888865
No 281
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=25.81 E-value=1.8e+02 Score=18.39 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031977 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDL 55 (150)
Q Consensus 13 ~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L 55 (150)
+...|..+...++..+..+...+...- ...++..+.+.+..|
T Consensus 25 ~~~~L~~l~~~~~~~~~~~~~~l~~~f-~~~d~~~A~~~~~kL 66 (78)
T PF07743_consen 25 DEAELEELKKEIEERIKELIKELAEAF-DAKDWEEAKEALRKL 66 (78)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCcHHHHHHHHHHH
Confidence 346777777777777777777776666 455666666666544
No 282
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=25.78 E-value=1.2e+02 Score=23.23 Aligned_cols=30 Identities=13% Similarity=0.197 Sum_probs=22.7
Q ss_pred eeEeEEEc--CCCeEEEE-c-cCceeeecCHHHH
Q 031977 72 LYVPGTLD--DARKVLVD-I-GTGYFVEKTMDEG 101 (150)
Q Consensus 72 ~yv~g~i~--~~~~VlV~-l-G~g~~vE~~~~eA 101 (150)
.|++|+|. .++.|+|+ . |-||-|-.|..-.
T Consensus 3 ~~l~G~v~~~~~~~vvie~~~GvGY~v~~~~~~~ 36 (188)
T PRK14606 3 AGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTS 36 (188)
T ss_pred ceEEEEEEEecCCEEEEEeCCcEEEEEEeCHHHH
Confidence 47888886 57889998 4 7888888875544
No 283
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=25.70 E-value=89 Score=26.87 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=23.2
Q ss_pred cCceeeecCHHHHHHHHHHHHHHHHHH
Q 031977 89 GTGYFVEKTMDEGKDYCERKINLLKSN 115 (150)
Q Consensus 89 G~g~~vE~~~~eA~~~l~rr~~~l~~~ 115 (150)
|.|=|.+.|.+||.+++.++++.+.+.
T Consensus 78 G~g~~~~isWdeAl~~ia~~l~~i~~~ 104 (461)
T cd02750 78 GEGKWKRISWDEALELIADAIIDTIKK 104 (461)
T ss_pred CCCceEEecHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999998876543
No 284
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=25.55 E-value=3.8e+02 Score=21.94 Aligned_cols=39 Identities=10% Similarity=0.244 Sum_probs=22.0
Q ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 94 VEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDE 132 (150)
Q Consensus 94 vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~ 132 (150)
+|+.+.+|+.-+..++...+..++.+..+-..+...|..
T Consensus 163 iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIek 201 (267)
T PF10234_consen 163 IEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEK 201 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666665555554444444433
No 285
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.54 E-value=2.8e+02 Score=24.62 Aligned_cols=52 Identities=8% Similarity=0.066 Sum_probs=29.9
Q ss_pred eeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Q 031977 92 YFVEKTMDEGKDYCERKINLLKSNFDQLIEVAT-------KKKTISDEAAVILQAKLKQ 143 (150)
Q Consensus 92 ~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~-------~~~~~~~~v~~~i~~~~~~ 143 (150)
-|-++.-..|..--..+.+.|+++++.++.++. .....++.++..+.+.-.+
T Consensus 61 ~FddkVnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 61 TFDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 344555556666777777777777777765554 3444444444444444333
No 286
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=25.53 E-value=88 Score=27.97 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=23.7
Q ss_pred CceeeecCHHHHHHHHHHHHHHHHHH
Q 031977 90 TGYFVEKTMDEGKDYCERKINLLKSN 115 (150)
Q Consensus 90 ~g~~vE~~~~eA~~~l~rr~~~l~~~ 115 (150)
.|=|.+.|.+||.+.+.+|++.+.+.
T Consensus 70 ~g~~~~iSWDEAl~~iA~kl~~i~~~ 95 (609)
T cd02751 70 EGEFVRISWDEALDLVASELKRIREK 95 (609)
T ss_pred CCCEEEecHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999887764
No 287
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=25.44 E-value=2.7e+02 Score=25.73 Aligned_cols=49 Identities=14% Similarity=0.082 Sum_probs=21.9
Q ss_pred eeeecCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 92 YFVEKTMDEGK-DYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAK 140 (150)
Q Consensus 92 ~~vE~~~~eA~-~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~ 140 (150)
+-+|.+--|++ .-++..|+.++..++.+++.|..++.++..+...|++.
T Consensus 91 Vs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqa 140 (907)
T KOG2264|consen 91 VSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQA 140 (907)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 33444433332 23333344455555555555544444444444444433
No 288
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=25.43 E-value=77 Score=29.32 Aligned_cols=42 Identities=10% Similarity=0.180 Sum_probs=30.0
Q ss_pred EeEEEcCCCeEEEEc--cCceeeecCHHHHHHHHHHHHHHHHHH
Q 031977 74 VPGTLDDARKVLVDI--GTGYFVEKTMDEGKDYCERKINLLKSN 115 (150)
Q Consensus 74 v~g~i~~~~~VlV~l--G~g~~vE~~~~eA~~~l~rr~~~l~~~ 115 (150)
..-.+.+++++.-++ +.|=|.+-|.+||.+++..+++.+.+.
T Consensus 263 ~~~~l~~pdRl~~Pl~R~~g~~~~iSWdeAl~~ia~~L~~i~~~ 306 (776)
T PRK09129 263 SYEGLNSEDRLTKPMIKQGGQWKEVDWETALEYVAEGLKGIIED 306 (776)
T ss_pred cccccccccccCCCeEecCCceEEcCHHHHHHHHHHHHHHHHhh
Confidence 333445555554444 356789999999999999999887653
No 289
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=25.41 E-value=4.2e+02 Score=22.48 Aligned_cols=111 Identities=21% Similarity=0.255 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecC---CceeEeEEEcCCCeEEEEccCc
Q 031977 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLT---ASLYVPGTLDDARKVLVDIGTG 91 (150)
Q Consensus 15 ~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg---~~~yv~g~i~~~~~VlV~lG~g 91 (150)
.++...+..|+..+..+...+..|......++.+++++.. |+. ..++.+. ++.-+++--+
T Consensus 53 ~di~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~------------pl~i~~ecL~~R~-----~R~~~dlv~D 115 (384)
T PF03148_consen 53 RDIRFWKNELERELEELDEEIDLLEEEKRRLEKALEALRK------------PLSIAQECLSLRE-----KRPGIDLVHD 115 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------cHHHHHHHHHHHh-----CCCCcccCCC
Confidence 4556667777777777777777777777777777666642 221 1123222 1222222222
Q ss_pred eeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031977 92 YFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQ 143 (150)
Q Consensus 92 ~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~ 143 (150)
-||..+-.-.+.+..=...|...++...+.+..++.-...++.-+..|..+
T Consensus 116 -~ve~eL~kE~~li~~~~~lL~~~l~~~~eQl~~lr~ar~~Le~Dl~dK~~A 166 (384)
T PF03148_consen 116 -EVEKELLKEVELIENIKRLLQRTLEQAEEQLRLLRAARYRLEKDLSDKFEA 166 (384)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666777777777777788888888888888888888888888777654
No 290
>PF09285 Elong-fact-P_C: Elongation factor P, C-terminal; InterPro: IPR015365 These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology []. ; GO: 0043043 peptide biosynthetic process, 0005737 cytoplasm; PDB: 1YBY_A 3OYY_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H.
Probab=25.37 E-value=81 Score=19.54 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=24.8
Q ss_pred ceEEEecCCceeEeEEEcCCCeEEEEccCceeeec
Q 031977 62 AKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEK 96 (150)
Q Consensus 62 ~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE~ 96 (150)
+...+.=|..+-||-=|...++|.|+-=+|=|+++
T Consensus 22 K~A~letG~~i~VP~FI~~Gd~I~VdT~~g~Yv~R 56 (56)
T PF09285_consen 22 KPATLETGAEIQVPLFIEEGDKIKVDTRDGSYVER 56 (56)
T ss_dssp EEEEETTS-EEEEETT--TT-EEEEETTTTEEEEE
T ss_pred cEEEEcCCCEEEccceecCCCEEEEECCCCeEeCC
Confidence 55666666667777778889999999999999975
No 291
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=25.33 E-value=1.2e+02 Score=26.76 Aligned_cols=38 Identities=21% Similarity=0.382 Sum_probs=28.5
Q ss_pred EEcCCCeE---EEEccCceeeecCHHHHHHHHHHHHHHHHH
Q 031977 77 TLDDARKV---LVDIGTGYFVEKTMDEGKDYCERKINLLKS 114 (150)
Q Consensus 77 ~i~~~~~V---lV~lG~g~~vE~~~~eA~~~l~rr~~~l~~ 114 (150)
.+.+++++ ++-.|.|=|.+.|.+||.+.+.++++.+.+
T Consensus 48 ~~y~p~Rl~~Pl~R~~~~~~~~iSWdeAl~~ia~kl~~i~~ 88 (565)
T cd02754 48 TLNGPERLTRPLLRRNGGELVPVSWDEALDLIAERFKAIQA 88 (565)
T ss_pred ccCCcccccCCeEeCCCCCEEEccHHHHHHHHHHHHHHHHH
Confidence 34454544 445565589999999999999999987765
No 292
>PRK15102 trimethylamine N-oxide reductase I catalytic subunit; Provisional
Probab=25.18 E-value=87 Score=29.23 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=25.4
Q ss_pred cCceeeecCHHHHHHHHHHHHHHHHHHH
Q 031977 89 GTGYFVEKTMDEGKDYCERKINLLKSNF 116 (150)
Q Consensus 89 G~g~~vE~~~~eA~~~l~rr~~~l~~~~ 116 (150)
|.|=|++.|.|||.+.+..|++.+.+.-
T Consensus 113 G~g~f~~ISWDEAld~IA~kl~~i~~~~ 140 (825)
T PRK15102 113 GDNRFVRVSWDEALDLFYEELERVQKTY 140 (825)
T ss_pred CCCcEEEecHHHHHHHHHHHHHHHHHhh
Confidence 5789999999999999999999988764
No 293
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=25.05 E-value=3e+02 Score=20.57 Aligned_cols=41 Identities=10% Similarity=0.261 Sum_probs=18.9
Q ss_pred CHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 97 TMDEGKDYCER----KINLLKSNFDQLIEVATKKKTISDEAAVIL 137 (150)
Q Consensus 97 ~~~eA~~~l~r----r~~~l~~~~~~l~~~l~~~~~~~~~v~~~i 137 (150)
|+++...+++. ....+.+.+..+..++..++.....+...+
T Consensus 60 sL~eI~~ll~~~~~~~~~~L~~~~~~l~~ei~~L~~~~~~l~~ll 104 (172)
T cd04790 60 SLEDIRSLLQQPGDDATDVLRRRLAELNREIQRLRQQQRAIATLL 104 (172)
T ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455554431 223344455555555555555444444443
No 294
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=25.01 E-value=76 Score=29.44 Aligned_cols=117 Identities=11% Similarity=0.146 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCceEEEecCCceeEeEEEcCCC-eEEEEccCce
Q 031977 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDL-SLRPQGAKMLVPLTASLYVPGTLDDAR-KVLVDIGTGY 92 (150)
Q Consensus 15 ~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L-~~~~~~~eilvplg~~~yv~g~i~~~~-~VlV~lG~g~ 92 (150)
+.+...+++++.|+..|+..+..-...+..++.-...+... +....+.++|+.=-+ .+. |.+ +.==++-+.-
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~--amq----dk~~~LE~sLsaEt 614 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALS--AMQ----DKNQHLENSLSAET 614 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH--HHH----HHHHHHHHhhhHHH
Confidence 44666666777777777666665555555554443333332 111112222221100 000 000 0000122223
Q ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 93 FVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVIL 137 (150)
Q Consensus 93 ~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i 137 (150)
=+..++-.|.---.|.++.++..+.+-..+|.+++..|..+.+++
T Consensus 615 riKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~ 659 (697)
T PF09726_consen 615 RIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVM 659 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345566677777888888888888888888888888888887765
No 295
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=24.86 E-value=88 Score=28.90 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=24.3
Q ss_pred cCceeeecCHHHHHHHHHHHHHHHHHH
Q 031977 89 GTGYFVEKTMDEGKDYCERKINLLKSN 115 (150)
Q Consensus 89 G~g~~vE~~~~eA~~~l~rr~~~l~~~ 115 (150)
|.|=|++.|.+||.+.+..|+..+.+.
T Consensus 67 G~g~f~~iSWDEAl~~IA~kl~~i~~~ 93 (770)
T TIGR00509 67 GREEFVRVSWDEALDLVAEELKRVRKT 93 (770)
T ss_pred CCCCeEEecHHHHHHHHHHHHHHHHHh
Confidence 367899999999999999999998875
No 296
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=24.83 E-value=44 Score=31.18 Aligned_cols=37 Identities=8% Similarity=0.160 Sum_probs=28.3
Q ss_pred EcCCCeEEEEc---cCceeeecCHHHHHHHHHHHHHHHHH
Q 031977 78 LDDARKVLVDI---GTGYFVEKTMDEGKDYCERKINLLKS 114 (150)
Q Consensus 78 i~~~~~VlV~l---G~g~~vE~~~~eA~~~l~rr~~~l~~ 114 (150)
+.+++++.-++ |.|=|.+.|.+||.+++..+++.+.+
T Consensus 273 ~~~~dRL~~PliR~~~g~f~~iSWdEAld~ia~kL~~i~~ 312 (797)
T PRK07860 273 ATQPDRITTPLVRDEDGELEPASWSEALAVAARGLAAARG 312 (797)
T ss_pred hccccccCCceEEcCCCceEEcCHHHHHHHHHHHHHhhhc
Confidence 34445544433 78889999999999999999987754
No 297
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=24.68 E-value=97 Score=26.70 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.9
Q ss_pred cCceeeecCHHHHHHHHHHHHHHHHHH
Q 031977 89 GTGYFVEKTMDEGKDYCERKINLLKSN 115 (150)
Q Consensus 89 G~g~~vE~~~~eA~~~l~rr~~~l~~~ 115 (150)
|.|=|.+-|.+||.+++.++++.+.+.
T Consensus 66 G~g~~~~isWdeAl~~ia~~l~~~~~~ 92 (477)
T cd02759 66 GENKWERISWDEALDEIAEKLAEIKAE 92 (477)
T ss_pred CCCcEEEecHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999998887654
No 298
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=24.65 E-value=1.4e+02 Score=24.49 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTA 41 (150)
Q Consensus 11 ~l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~ 41 (150)
.+.+.+|.+.++.|+.+++.|..+-+.++..
T Consensus 3 ~~~L~eL~qrk~~Lq~eIe~LerR~~ri~~E 33 (283)
T PF11285_consen 3 QEALKELEQRKQALQIEIEQLERRRERIEKE 33 (283)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888888888887777663
No 299
>COG3584 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.65 E-value=48 Score=23.48 Aligned_cols=14 Identities=43% Similarity=0.987 Sum_probs=11.6
Q ss_pred eEEEecCCceeEeE
Q 031977 63 KMLVPLTASLYVPG 76 (150)
Q Consensus 63 eilvplg~~~yv~g 76 (150)
.-.+|||+-+||++
T Consensus 56 P~ViPlGs~v~V~g 69 (109)
T COG3584 56 PSVIPLGSRVYVPG 69 (109)
T ss_pred CceecccCEEEEcC
Confidence 34689999999997
No 300
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=24.54 E-value=82 Score=29.44 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=22.4
Q ss_pred CceeeecCHHHHHHHHHHHHHHHHH
Q 031977 90 TGYFVEKTMDEGKDYCERKINLLKS 114 (150)
Q Consensus 90 ~g~~vE~~~~eA~~~l~rr~~~l~~ 114 (150)
.|=|++.|.+||.+++.++++.+.+
T Consensus 113 ~g~~~~isWdeAl~~iA~~l~~i~~ 137 (830)
T PRK13532 113 EGEFTPVSWDQAFDVMAEKFKKALK 137 (830)
T ss_pred CCCeEEecHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999887754
No 301
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=24.34 E-value=1.8e+02 Score=17.81 Aligned_cols=29 Identities=14% Similarity=0.247 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 22 EQTDLEVNLLQDSLNNIRTATSRLESAST 50 (150)
Q Consensus 22 ~ql~~e~~~l~~~~~~L~~~~~e~~~~~e 50 (150)
..|+..+..|......|...+..+..-..
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~ 57 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEIQ 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333
No 302
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=24.33 E-value=2.8e+02 Score=20.08 Aligned_cols=27 Identities=15% Similarity=0.095 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 111 LLKSNFDQLIEVATKKKTISDEAAVIL 137 (150)
Q Consensus 111 ~l~~~~~~l~~~l~~~~~~~~~v~~~i 137 (150)
.+.+.+..+.+.+.+++...+.+...+
T Consensus 84 ~l~~~~~~l~~ki~~L~~~~~~L~~~~ 110 (142)
T TIGR01950 84 LSSQWREELDERIDQLNALRDQLDGCI 110 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 303
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.31 E-value=2.7e+02 Score=19.86 Aligned_cols=12 Identities=8% Similarity=0.252 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 031977 31 LQDSLNNIRTAT 42 (150)
Q Consensus 31 l~~~~~~L~~~~ 42 (150)
.+.++.+.+..+
T Consensus 37 ~k~el~~yk~~V 48 (128)
T PF06295_consen 37 AKQELEQYKQEV 48 (128)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 304
>PHA03052 Hypothetical protein; Provisional
Probab=24.31 E-value=2.1e+02 Score=18.58 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=29.3
Q ss_pred ceEEEecCCceeEeEEEc----CCCeEEEEccCceeeecCH
Q 031977 62 AKMLVPLTASLYVPGTLD----DARKVLVDIGTGYFVEKTM 98 (150)
Q Consensus 62 ~eilvplg~~~yv~g~i~----~~~~VlV~lG~g~~vE~~~ 98 (150)
..+.+.||+.+-++.++. ..+.++.|+-.|-|+|.+-
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~d 45 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEEDD 45 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEeccc
Confidence 467889999998888874 3578889999999987653
No 305
>TIGR03073 release_rtcB release factor H-coupled RctB family protein. Members of this family are related to RctB. RctB a protein of known structure but unknown function that often is encoded near RNA cyclase and therefore is suggested to be a tRNA or mRNA processing enzyme. This family of RctB-like proteins in encoded upstream of, and apparently is translationally coupled to, the putative peptide chain release factor RF-H (TIGR03072), product of the prfH gene. Note that a large deletion at the junction between this gene and the prfH gene in Escherichia coli K-12 marks both as probable pseudogenes.
Probab=24.18 E-value=38 Score=28.70 Aligned_cols=37 Identities=24% Similarity=0.270 Sum_probs=28.4
Q ss_pred EecCCceeEeEEEcCCCeEEEEccCceeeecCHHHHHH
Q 031977 66 VPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKD 103 (150)
Q Consensus 66 vplg~~~yv~g~i~~~~~VlV~lG~g~~vE~~~~eA~~ 103 (150)
+|+|..++..+.|. |+-|=+|||+|..+=+|--.+.+
T Consensus 43 ~pIG~v~~~~~~I~-P~~VG~DIgCGm~l~~t~l~~~~ 79 (356)
T TIGR03073 43 YPIGAAFFSVGRFY-PALVGNDIGCGMALWQTGLLARK 79 (356)
T ss_pred cceEEEEecCCEEe-ccccccCcCCeEEEEecCCChHh
Confidence 78998887777777 77899999999999665433333
No 306
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=24.17 E-value=1.9e+02 Score=23.99 Aligned_cols=54 Identities=15% Similarity=0.051 Sum_probs=30.5
Q ss_pred EcCCCeEEEEccCceeeecCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 78 LDDARKVLVDIGTGYFVEKTMDEG-KDYCERKINLLKSNFDQLIEVATKKKTISD 131 (150)
Q Consensus 78 i~~~~~VlV~lG~g~~vE~~~~eA-~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~ 131 (150)
|...++.+++=|.+|+--+..=+| ..-=+..|..|++++.+|...+..++.+++
T Consensus 122 i~tn~KYLIvn~~~F~~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid 176 (308)
T PF06717_consen 122 IKTNDKYLIVNDQDFNYRFNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKID 176 (308)
T ss_pred cccCCcEEEecchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344568888888888766553322 222333455555555555555555555554
No 307
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=24.16 E-value=83 Score=27.99 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 108 KINLLKSNFDQLIEVATKKKTISDEAAV 135 (150)
Q Consensus 108 r~~~l~~~~~~l~~~l~~~~~~~~~v~~ 135 (150)
+|+.|++++++|++++..++.+++.++.
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhH
Confidence 7777777777777776666655555443
No 308
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=24.15 E-value=2.3e+02 Score=21.42 Aligned_cols=35 Identities=11% Similarity=0.139 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 102 KDYCERKINLLKSNFDQLIEVATKKKTISDEAAVI 136 (150)
Q Consensus 102 ~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~ 136 (150)
.+-+.+.+..+++.|..|.+.|..+..+...+...
T Consensus 31 ~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 31 REELRSELAKVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 35566666667777777777766666666655544
No 309
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=24.13 E-value=6.1e+02 Score=23.93 Aligned_cols=44 Identities=11% Similarity=0.082 Sum_probs=34.0
Q ss_pred cCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 96 KTMDEGKDYCERKINLLK-SNFDQLIEVATKKKTISDEAAVILQA 139 (150)
Q Consensus 96 ~~~~eA~~~l~rr~~~l~-~~~~~l~~~l~~~~~~~~~v~~~i~~ 139 (150)
++-.+|..+++-|+..|. ...+++.+++.+++.+++.+...|..
T Consensus 408 ~~~~qa~~il~m~L~~Lt~~e~~kl~~e~~~l~~ei~~l~~iL~~ 452 (800)
T TIGR01063 408 LSEIQAQAILDMRLQRLTGLEREKLQEEYKELLELIADLEDILAS 452 (800)
T ss_pred CCHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455688888888888887 46778888888888888887777643
No 310
>PRK07737 fliD flagellar capping protein; Validated
Probab=24.03 E-value=1.6e+02 Score=25.98 Aligned_cols=38 Identities=5% Similarity=0.022 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 031977 108 KINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLA 145 (150)
Q Consensus 108 r~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~ 145 (150)
|.+.|.+++..+.+++..+..++...+..+..++.+++
T Consensus 442 ~~~~l~~~i~~l~~~i~~~~~rl~~~e~ry~~qf~ale 479 (501)
T PRK07737 442 QQFAIGKDLNQIETQIDRFQDRLKQIEDRYYKKFSAME 479 (501)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666666666666666665555443
No 311
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=23.99 E-value=2.3e+02 Score=18.90 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031977 26 LEVNLLQDSLNNIRTATSRLESASTALHDL 55 (150)
Q Consensus 26 ~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L 55 (150)
.....|..++..+......+..+.+.++.+
T Consensus 72 ~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~ 101 (127)
T smart00502 72 NKLKVLEQQLESLTQKQEKLSHAINFTEEA 101 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777777777777663
No 312
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=23.83 E-value=1.9e+02 Score=22.67 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=32.0
Q ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 93 FVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQA 139 (150)
Q Consensus 93 ~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~ 139 (150)
+-|+..+.|++|+.+|++.-....+.+-+.-...-.+++.-.+.+..
T Consensus 110 l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l~~ 156 (215)
T COG2999 110 LPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRALDK 156 (215)
T ss_pred CccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHHHHH
Confidence 56899999999999999887766665555544444444444444443
No 313
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=23.81 E-value=4.2e+02 Score=21.90 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLES 47 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~ 47 (150)
.++|....+.+..+...++..+..++..+.++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (364)
T TIGR01242 8 IRKLEDEKRSLEKEKIRLERELERLRSEIERLRS 41 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4667777777777777777777777777777763
No 314
>PF15569 Imm21: Immunity protein 21
Probab=23.75 E-value=2.5e+02 Score=19.22 Aligned_cols=67 Identities=13% Similarity=0.178 Sum_probs=42.8
Q ss_pred HHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceeee-cCHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 45 LESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVE-KTMDEGKDYCERKINLLKSNFDQLIE 121 (150)
Q Consensus 45 ~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE-~~~~eA~~~l~rr~~~l~~~~~~l~~ 121 (150)
++++++.|+-+.. +-++=||+.+|. .. +.-+..-..|+|.+ ...++..++..+..+...+-+.+...
T Consensus 14 ~~dal~ii~~~~~-----~~i~ILGGDVY~---~~--~n~~~~tyDnWyy~~~~~~s~~eY~~~s~~~A~~YI~~y~~ 81 (91)
T PF15569_consen 14 FQDALKIINICEE-----KNIPILGGDVYK---LK--GNQIEITYDNWYYDRKNSESDIEYVRRSCKKAIDYINKYNE 81 (91)
T ss_pred HHHHHHHHHHHHh-----cCceEEcceEEE---ee--CCEEEEecCceeecCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777653 235668999993 23 33566677888774 45566677777766666666655543
No 315
>PRK11118 putative monooxygenase; Provisional
Probab=23.60 E-value=1.4e+02 Score=20.76 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=24.8
Q ss_pred EccCceeeecCHHHHHHHHHHHHHHHHHH
Q 031977 87 DIGTGYFVEKTMDEGKDYCERKINLLKSN 115 (150)
Q Consensus 87 ~lG~g~~vE~~~~eA~~~l~rr~~~l~~~ 115 (150)
..+.|+|+=-+.+.|..|++.....|+..
T Consensus 48 ~eaGGiYlF~~e~~a~aYl~mH~aRL~~~ 76 (100)
T PRK11118 48 QEAGGIYLFEDEASAEAYLEMHTARLKNF 76 (100)
T ss_pred cccceEEEECCHHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999988877654
No 316
>PRK08453 fliD flagellar capping protein; Validated
Probab=23.59 E-value=3e+02 Score=25.58 Aligned_cols=36 Identities=8% Similarity=0.064 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 107 RKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLK 142 (150)
Q Consensus 107 rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~ 142 (150)
.|.+.|.+++..+..++..+++++...++.+..++.
T Consensus 621 ~~~~sL~~q~k~L~~q~~~~e~rL~~ry~rl~~qFs 656 (673)
T PRK08453 621 IYEDSLTRDAKSLTKDKENAQELLKTRYDIMAERFA 656 (673)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555554443
No 317
>KOG2706 consensus Predicted membrane protein [Function unknown]
Probab=23.58 E-value=32 Score=29.10 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=26.8
Q ss_pred EEEecCCceeEeEEEcCCCeEEEEccCceeeec
Q 031977 64 MLVPLTASLYVPGTLDDARKVLVDIGTGYFVEK 96 (150)
Q Consensus 64 ilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE~ 96 (150)
.|..+|+|+||+---.+..+++++-|.||-+-.
T Consensus 12 LL~c~GAg~YVkKIadegqr~LaS~~LG~~m~l 44 (476)
T KOG2706|consen 12 LLFCFGAGCYVKKIADEGQRILASGALGFAMSL 44 (476)
T ss_pred HHhhcccchhhhhhccCCceEEeeccccceehe
Confidence 467899999998665667799999999987653
No 318
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=23.54 E-value=95 Score=17.69 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 031977 106 ERKINLLKSNFDQLI 120 (150)
Q Consensus 106 ~rr~~~l~~~~~~l~ 120 (150)
++|++.+.+.+.++.
T Consensus 21 E~kld~L~~~i~~L~ 35 (38)
T PF12841_consen 21 EKKLDELTESINELS 35 (38)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555544443
No 319
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=23.54 E-value=99 Score=28.57 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=23.8
Q ss_pred cCceeeecCHHHHHHHHHHHHHHHHHH
Q 031977 89 GTGYFVEKTMDEGKDYCERKINLLKSN 115 (150)
Q Consensus 89 G~g~~vE~~~~eA~~~l~rr~~~l~~~ 115 (150)
|.|=|++.|.+||.+.+.+|++.+.+.
T Consensus 116 G~g~~~~iSWdeAl~~ia~kl~~i~~~ 142 (797)
T TIGR02166 116 GEGKFERISWDEATDTIADNLKRIIEK 142 (797)
T ss_pred CCCCeEEecHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999998888764
No 320
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=23.50 E-value=3.7e+02 Score=21.58 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcC
Q 031977 97 TMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLAPA 147 (150)
Q Consensus 97 ~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~~~ 147 (150)
+..+...-+..++..+++.+..+...+......+..++..+...+..+.++
T Consensus 107 ~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~ 157 (239)
T COG1579 107 SLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREE 157 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 321
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=23.48 E-value=2.8e+02 Score=20.20 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 16 QLKAIKEQTDLEVNLLQDSLNNIRTATSRLES 47 (150)
Q Consensus 16 qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~ 47 (150)
.|..-...++.+++.+...+...+....+-..
T Consensus 39 sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~ 70 (143)
T PF12718_consen 39 SLQKKNQQLEEELDKLEEQLKEAKEKLEESEK 70 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34444455555555555555555544444433
No 322
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=23.16 E-value=2.6e+02 Score=25.98 Aligned_cols=74 Identities=11% Similarity=0.185 Sum_probs=0.0
Q ss_pred EEecCCceeEeEEEcCCCeEEEEcc-CceeeecCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 65 LVPLTASLYVPGTLDDARKVLVDIG-TGYFVEKTMDEGKDY---CERKINLLKSNFDQLIEVATKKKTISDEAAVILQA 139 (150)
Q Consensus 65 lvplg~~~yv~g~i~~~~~VlV~lG-~g~~vE~~~~eA~~~---l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~ 139 (150)
|-+||.|+| .|-........-.-. .-|+=.++.+.|.+| +.+|+...+..|++++.+-++.-+.++...-..+.
T Consensus 326 L~sLTeGiF-~ap~~~~~~~~~~~~~~~~~gkLdp~~aeeF~kRV~~~ia~~~AEIekmK~~Hak~m~k~k~~s~lk~A 403 (669)
T PF08549_consen 326 LESLTEGIF-EAPGGQSGDASKEGPKKPYVGKLDPGKAEEFRKRVAKKIADMNAEIEKMKARHAKRMAKFKRNSLLKDA 403 (669)
T ss_pred hhhhhcccc-cCCCCCCccccccCCCcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
No 323
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=23.06 E-value=4.9e+02 Score=24.73 Aligned_cols=8 Identities=25% Similarity=0.322 Sum_probs=4.0
Q ss_pred CceeEeEE
Q 031977 70 ASLYVPGT 77 (150)
Q Consensus 70 ~~~yv~g~ 77 (150)
.|.|++.+
T Consensus 456 ~gy~iev~ 463 (840)
T TIGR01070 456 FGYYIEVT 463 (840)
T ss_pred ceEEEEEe
Confidence 35555544
No 324
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=23.00 E-value=3.3e+02 Score=22.28 Aligned_cols=50 Identities=10% Similarity=0.111 Sum_probs=43.5
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 95 EKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQL 144 (150)
Q Consensus 95 E~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~ 144 (150)
-.+..+....+..-+..+..++..++..+..+...-..+...|++|-...
T Consensus 157 ~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~EL 206 (267)
T PF10234_consen 157 PLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQEL 206 (267)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888889999999999999999999999999999999998887653
No 325
>TIGR02383 Hfq RNA chaperone Hfq. This model represents the RNA-binding pleiotropic regulator Hfq, a small, Sm-like protein of bacteria. It helps pair regulatory noncoding RNAs with complementary mRNA target regions. It enhances the elongation of poly(A) tails on mRNA. It appears also to protect RNase E recognition sites (A/U-rich sequences with adjacent stem-loop structures) from cleavage. Being pleiotropic, it differs in some of its activities in different species. Hfq binds the non-coding regulatory RNA DsrA (see Rfam RF00014) in the few species known to have it: Escherichia coli, Shigella flexneri, Salmonella spp. In Azorhizobium caulinodans, an hfq mutant is unable to express nifA, and Hfq is called NrfA, for nif regulatory factor (see PubMed:8197116). The name hfq reflects phenomenology as a host factor for phage Q-beta RNA replication.
Probab=22.94 E-value=1.2e+02 Score=19.23 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=25.4
Q ss_pred CCceEEEecCCceeEeEEEcCCCeEEEEccC
Q 031977 60 QGAKMLVPLTASLYVPGTLDDARKVLVDIGT 90 (150)
Q Consensus 60 ~~~eilvplg~~~yv~g~i~~~~~VlV~lG~ 90 (150)
+..++-|=|-+|+-++|.|..-|+..|-+..
T Consensus 14 ~~~~Vti~L~nG~~l~G~I~~fD~ftVll~~ 44 (61)
T TIGR02383 14 ERIPVTVFLVNGVQLKGVIESFDNFTVLLES 44 (61)
T ss_pred cCCcEEEEEeCCcEEEEEEEEEeeeEEEEEE
Confidence 4568889999999999999988877666653
No 326
>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional
Probab=22.93 E-value=1e+02 Score=28.62 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.9
Q ss_pred cCceeeecCHHHHHHHHHHHHHHHHHH
Q 031977 89 GTGYFVEKTMDEGKDYCERKINLLKSN 115 (150)
Q Consensus 89 G~g~~vE~~~~eA~~~l~rr~~~l~~~ 115 (150)
|.|=|++.|.+||.+++.+|+..+.+.
T Consensus 131 G~g~~~~iSWdEAl~~Ia~kl~~i~~~ 157 (814)
T PRK14990 131 GEGKFERISWEEAYDIIATNMQRLIKE 157 (814)
T ss_pred CCCCeEEeCHHHHHHHHHHHHHHHHHh
Confidence 468899999999999999999987664
No 327
>cd04781 HTH_MerR-like_sg6 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 6) with at least two conserved cysteines present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, an
Probab=22.70 E-value=2.7e+02 Score=19.26 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=18.8
Q ss_pred cCHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 96 KTMDEGKDYCERK------INLLKSNFDQLIEVATKKKTISDE 132 (150)
Q Consensus 96 ~~~~eA~~~l~rr------~~~l~~~~~~l~~~l~~~~~~~~~ 132 (150)
+|+++..++++.. ...+.+.+..+...+.++......
T Consensus 57 ~~L~eI~~~l~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~ 99 (120)
T cd04781 57 FSLDEIQAMLSHDGKPPIDRQLLKAKAAELDQQIQRLQAMREL 99 (120)
T ss_pred CCHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777777542 234444444444444444443333
No 328
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed
Probab=22.63 E-value=1.7e+02 Score=22.35 Aligned_cols=27 Identities=30% Similarity=0.571 Sum_probs=16.5
Q ss_pred eEeEEEc--CCCeEEEEccC-ceeeecCHH
Q 031977 73 YVPGTLD--DARKVLVDIGT-GYFVEKTMD 99 (150)
Q Consensus 73 yv~g~i~--~~~~VlV~lG~-g~~vE~~~~ 99 (150)
|+.|+|. ..+.|++++|. ||-|-.|..
T Consensus 4 ~i~G~i~~~~~~~~ii~~~gvGY~v~~~~~ 33 (192)
T PRK00116 4 YLKGKLVEKGPDYVVIEVNGVGYEVQVPMR 33 (192)
T ss_pred eEEEEEEEEcCCEEEEEECCEEEEEEeCHH
Confidence 6666665 35667777663 666655543
No 329
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=22.62 E-value=2.7e+02 Score=24.62 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=25.5
Q ss_pred CceEEEecCCce--eEeE-----EEcCCCeEEEEcc---CceeeecCH
Q 031977 61 GAKMLVPLTASL--YVPG-----TLDDARKVLVDIG---TGYFVEKTM 98 (150)
Q Consensus 61 ~~eilvplg~~~--yv~g-----~i~~~~~VlV~lG---~g~~vE~~~ 98 (150)
++.+-+.+.+.+ |.|. .|.+.+-|.||+| .||++..+.
T Consensus 210 aFPt~vS~N~~aaH~tP~~gd~~vLk~GDvVkID~G~~vdGYiaD~Ar 257 (470)
T PTZ00053 210 AFPTGCSLNHCAAHYTPNTGDKTVLTYDDVCKLDFGTHVNGRIIDCAF 257 (470)
T ss_pred CCCceeecCccccCCCCCCCCCcEecCCCeEEEEEeEEECCEEEeEEE
Confidence 344445554322 5553 5788899999999 489988654
No 330
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=22.58 E-value=2.2e+02 Score=18.15 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=23.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031977 1 MASSKGGGMEKMSVEQLKAIKEQTDLEVNLLQ 32 (150)
Q Consensus 1 m~~~~~i~l~~l~~~qL~~~~~ql~~e~~~l~ 32 (150)
|+-...-++..+|+++|......+..++=.|.
T Consensus 1 M~~mk~~elr~ls~~eL~~~l~elk~elf~LR 32 (67)
T CHL00154 1 MSLPKITDIIDLTDSEISEEIIKTKKELFDLR 32 (67)
T ss_pred CCCCCHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 34333345678999999999888888887775
No 331
>TIGR02054 MerD mercuric resistence transcriptional repressor protein MerD. This model represents a transcriptional repressor protein of the MerR family (pfam00376) whose expression is regulated by the mercury-sensitive transcriptional activator, MerR. MerD has been shown to repress the transcription of the mer operon.
Probab=22.52 E-value=2.9e+02 Score=19.54 Aligned_cols=49 Identities=12% Similarity=0.071 Sum_probs=27.5
Q ss_pred cCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 96 KTMDEGKDYCER----KINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQL 144 (150)
Q Consensus 96 ~~~~eA~~~l~r----r~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~ 144 (150)
+++++...++.- ....+...+......+.....++..+...|.......
T Consensus 61 ~~L~eI~~ll~~~~~~~~~~~~~~~~~~~~~i~~ki~~L~~l~~~L~~l~~~~ 113 (120)
T TIGR02054 61 IGLGELARLCRALDAANGDDTAACLAVLRQLVEARREALAALEVQLAAMPTAA 113 (120)
T ss_pred CCHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466777777652 1233445555555555566666666666666555433
No 332
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=22.52 E-value=2.2e+02 Score=23.65 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 107 RKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLK 142 (150)
Q Consensus 107 rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~ 142 (150)
.+|..|+.+++++.++-...+-++..+++.++.--+
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKq 53 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQ 53 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 579999999999999999999999999999975443
No 333
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=22.51 E-value=55 Score=28.11 Aligned_cols=28 Identities=14% Similarity=0.489 Sum_probs=24.2
Q ss_pred cCCceeEeEEEcCCCeEEEEccCceeee
Q 031977 68 LTASLYVPGTLDDARKVLVDIGTGYFVE 95 (150)
Q Consensus 68 lg~~~yv~g~i~~~~~VlV~lG~g~~vE 95 (150)
+..+.|.++-+++.+.+++.+|.++|.-
T Consensus 344 vN~~a~l~~~v~~eeg~I~s~GdDcytR 371 (425)
T KOG2695|consen 344 VNLSAYLPAHVKEEEGSIFSVGDDCYTR 371 (425)
T ss_pred cccccccccccccccceEEEccCeeEEE
Confidence 3457899999999999999999999953
No 334
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=22.49 E-value=95 Score=27.34 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=23.1
Q ss_pred CceeeecCHHHHHHHHHHHHHHHHHH
Q 031977 90 TGYFVEKTMDEGKDYCERKINLLKSN 115 (150)
Q Consensus 90 ~g~~vE~~~~eA~~~l~rr~~~l~~~ 115 (150)
.|=|.+.|.++|.+.+.++++.+.+.
T Consensus 73 ~g~~~~isWdeAl~~ia~~l~~~~~~ 98 (523)
T cd02757 73 DPKFVPISWDEALDTIADKIRALRKE 98 (523)
T ss_pred CCCeeEecHHHHHHHHHHHHHHHHHh
Confidence 78899999999999999998887653
No 335
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=22.49 E-value=78 Score=22.78 Aligned_cols=65 Identities=14% Similarity=0.186 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhhccCCCCCceEEEecCCceeEeE
Q 031977 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRL---------ESASTALHDLSLRPQGAKMLVPLTASLYVPG 76 (150)
Q Consensus 11 ~l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~---------~~~~e~l~~L~~~~~~~eilvplg~~~yv~g 76 (150)
.+|.++.......++...+.++...+.++..+..- .....+++.+.. ..|..+.++-++-+|...
T Consensus 72 ~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~i~~~v~~~a~-~~g~~~Vl~~~~vly~~~ 145 (158)
T PF03938_consen 72 TLSEEERQKRQQELQQKEQELQQFQQQAQQQLQQEEQELLQPIQKKINKAVEEYAK-ENGYDLVLDKNAVLYADP 145 (158)
T ss_dssp --SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTT-SEEEEGGGEEEE-T
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCeEEEeCCceEeeCC
Confidence 45556555555555554444444443333322211 122334444432 457888888777666654
No 336
>PF07996 T4SS: Type IV secretion system proteins; InterPro: IPR014158 This entry contains VirB5, a protein that is involved in the type IV DNA secretion systems typified by the Agrobacterium Ti plasmid vir system where it interacts with several other proteins essential for proper pilus formation []. VirB5 is homologous to the IncN (N-type) conjugation system protein TraC [] as well as the P-type protein TrbJ and the F-type protein TraE [].; PDB: 1R8I_A.
Probab=22.47 E-value=3.3e+02 Score=20.24 Aligned_cols=23 Identities=9% Similarity=0.189 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 031977 33 DSLNNIRTATSRLESASTALHDL 55 (150)
Q Consensus 33 ~~~~~L~~~~~e~~~~~e~l~~L 55 (150)
.++.+++..+..++.-.+++.+.
T Consensus 26 ~q~~q~~~Ql~~~k~q~~s~tG~ 48 (195)
T PF07996_consen 26 QQLEQLKQQLQQAKQQYNSLTGN 48 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 33333343444444444444443
No 337
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=22.46 E-value=2.7e+02 Score=19.16 Aligned_cols=41 Identities=10% Similarity=0.115 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 031977 17 LKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSL 57 (150)
Q Consensus 17 L~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~ 57 (150)
...-...+..++..|...+..+...+.+|....+-|+.+.+
T Consensus 79 k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~~v~~ 119 (126)
T PF13863_consen 79 KEAEIKKLKAELEELKSEISKLEEKLEEYKKYEEFLEKVVP 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444555566666666666666677777777766666543
No 338
>PF04025 DUF370: Domain of unknown function (DUF370); InterPro: IPR007169 This is a bacterial family of unknown function.
Probab=22.44 E-value=42 Score=22.02 Aligned_cols=13 Identities=38% Similarity=0.815 Sum_probs=10.2
Q ss_pred EEEccCceeeecC
Q 031977 85 LVDIGTGYFVEKT 97 (150)
Q Consensus 85 lV~lG~g~~vE~~ 97 (150)
+|+||.|.||-.+
T Consensus 1 ~inIGfgn~V~~~ 13 (73)
T PF04025_consen 1 FINIGFGNFVNAD 13 (73)
T ss_pred CeEecCCcEEEcc
Confidence 5889999998653
No 339
>PRK03918 chromosome segregation protein; Provisional
Probab=22.33 E-value=6.3e+02 Score=23.43 Aligned_cols=30 Identities=10% Similarity=0.166 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 103 DYCERKINLLKSNFDQLIEVATKKKTISDE 132 (150)
Q Consensus 103 ~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~ 132 (150)
+-+...+..+++.+..+...+..+...+..
T Consensus 455 ~~~~~ei~~l~~~~~~l~~~~~~l~~~~~~ 484 (880)
T PRK03918 455 EEYTAELKRIEKELKEIEEKERKLRKELRE 484 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555444444443
No 340
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=22.30 E-value=2.5e+02 Score=23.81 Aligned_cols=83 Identities=13% Similarity=0.142 Sum_probs=50.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCceEE----EecCCceeEeEEEcCC
Q 031977 7 GGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRP-QGAKML----VPLTASLYVPGTLDDA 81 (150)
Q Consensus 7 i~l~~l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~-~~~eil----vplg~~~yv~g~i~~~ 81 (150)
+++-.++++|..++..=++.+++..+++.+-|+.....+..-+..=...+... ....++ -|.|...-..|.+..+
T Consensus 197 ~nlle~d~eqvsqL~~Li~aqLdfhrqs~~iL~~l~~~l~~r~r~a~~~prrey~p~~~~an~f~p~~~p~~~~g~~s~T 276 (366)
T KOG1118|consen 197 FNLLENDVEQVSQLSALIQAQLDFHRQSTQILQELQMKLFSRIRDASSQPRREYVPRSVLANEFAPSGPPIQLNGKLSKT 276 (366)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCchhhcCCcccccccCCCCCCccccCCCCCcC
Confidence 56777889999999999999999999888888877666654333222222110 011222 2566666666666655
Q ss_pred CeEEEEcc
Q 031977 82 RKVLVDIG 89 (150)
Q Consensus 82 ~~VlV~lG 89 (150)
.......|
T Consensus 277 ~~t~~~as 284 (366)
T KOG1118|consen 277 TSTPQSAS 284 (366)
T ss_pred ccCccccC
Confidence 44433333
No 341
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=22.21 E-value=3.2e+02 Score=21.37 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=34.3
Q ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 93 FVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAA 134 (150)
Q Consensus 93 ~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~ 134 (150)
.+|.|.|+.=+...+|...++....++.+.+..-...+..+.
T Consensus 4 ~~e~T~D~~F~~~e~~f~~~e~~~~kL~k~~k~y~da~~~l~ 45 (224)
T cd07591 4 QVERTVDREFEFEERRYRTMEKASTKLQKEAKGYLDSLRALT 45 (224)
T ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999888888777766666543
No 342
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.21 E-value=1.8e+02 Score=17.05 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 105 CERKINLLKSNFDQLIEVATKKKTISDEAA 134 (150)
Q Consensus 105 l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~ 134 (150)
|.+.-+.|...-+.+..+-..++.++..+.
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 343
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=22.06 E-value=4e+02 Score=20.98 Aligned_cols=40 Identities=15% Similarity=0.143 Sum_probs=20.6
Q ss_pred CceEEEecCCcee----EeEEEcCCCeEEEEcc--CceeeecCHHH
Q 031977 61 GAKMLVPLTASLY----VPGTLDDARKVLVDIG--TGYFVEKTMDE 100 (150)
Q Consensus 61 ~~eilvplg~~~y----v~g~i~~~~~VlV~lG--~g~~vE~~~~e 100 (150)
...+..|+.+-+. -+|.....+..++.|. ..+|++..+++
T Consensus 134 ~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~~~~v~~~v~~ 179 (322)
T TIGR01730 134 YTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDLDPLEADFSVPE 179 (322)
T ss_pred cCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcCCcEEEEEEeCH
Confidence 4456666655332 1244444445555554 35777766554
No 344
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=22.03 E-value=2.9e+02 Score=19.46 Aligned_cols=33 Identities=6% Similarity=0.100 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 16 QLKAIKEQTDLEVNLLQDSLNNIRTATSRLESA 48 (150)
Q Consensus 16 qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~ 48 (150)
+|....+.|.++-..+.+.+..|+..+.+....
T Consensus 41 ~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~ 73 (107)
T PF09304_consen 41 QLRNALQSLQAQNASRNQRIAELQAKIDEARRN 73 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555444433
No 345
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=22.03 E-value=2.8e+02 Score=19.15 Aligned_cols=36 Identities=8% Similarity=0.106 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 104 YCERKINLLKSNFDQLIEVATKKKTISDEAAVILQA 139 (150)
Q Consensus 104 ~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~ 139 (150)
-|.+.+.++++..+-+...+.++..+-..+...|.+
T Consensus 5 eLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~k 40 (96)
T PF11365_consen 5 ELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNK 40 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888888888888888775
No 346
>PF10596 U6-snRNA_bdg: U6-snRNA interacting domain of PrP8; InterPro: IPR019580 This entry represents the interacting site for U6-snRNA, which is part of U4/U6. U5 tri-snRNPs complex of the spliceosome is a prime candidate for the role of cofactor in the spliceosome's RNA core. The essential spliceosomal protein Prp8 interacts with U5 and U6 snRNAs and with specific pre-mRNA sequences that participate in catalysis. This close association with crucial RNA sequences, together with extensive genetic evidence, suggests that Prp8 could directly affect the function of the catalytic core, perhaps acting as a splicing cofactor [].
Probab=22.02 E-value=63 Score=24.36 Aligned_cols=45 Identities=16% Similarity=0.182 Sum_probs=34.9
Q ss_pred CceEEEecCCceeEeEEEcCCCeEEEEccCceeeecCHHHHHHHHH
Q 031977 61 GAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCE 106 (150)
Q Consensus 61 ~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE~~~~eA~~~l~ 106 (150)
|..+-++++ |+|+.|+++.-..-+|.+..+....+..+...-.+.
T Consensus 109 GfqvqldlT-gIfmhGK~ptlkiS~i~ifr~~lwqkih~svv~dl~ 153 (160)
T PF10596_consen 109 GFQVQLDLT-GIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLC 153 (160)
T ss_pred EEEeecccc-ceeccCcCchhhhhhhhcccccchheehHHHHHHHH
Confidence 455666666 599999999777667999999999999887764433
No 347
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=21.98 E-value=1.1e+02 Score=28.11 Aligned_cols=27 Identities=30% Similarity=0.419 Sum_probs=23.8
Q ss_pred cCceeeecCHHHHHHHHHHHHHHHHHH
Q 031977 89 GTGYFVEKTMDEGKDYCERKINLLKSN 115 (150)
Q Consensus 89 G~g~~vE~~~~eA~~~l~rr~~~l~~~ 115 (150)
|.|=|++.|.+||.+++.+++..+.+.
T Consensus 110 g~g~~~~iSWdEAl~~ia~~l~~i~~~ 136 (759)
T PRK15488 110 GEGKWQEISWDEAYQEIAAKLNAIKQQ 136 (759)
T ss_pred CCCCeEEeCHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999887764
No 348
>cd04514 Taspase1_like Taspase1_like domains; Taspase1 catalyzes the cleavage of the mix lineage leukemia (MLL) nuclear protein and transcription factor TFIIA. Taspase1 is a threonine aspartase, a member of the Ntn hydrolase superfamily and the type 2 asparaginase family. A threonine residue acts as the active site nucleophile in both endopeptidease and protease activities to cleave polypeptide substrates after an aspartate residue. The Taspase1 proenzyme undergoes autoproteolysis into alpha and beta subunits. The N-terminal residue of the beta subunit is a threonine which is the active catalytic residue. The active enzyme is a heterotetramer.
Probab=21.90 E-value=2e+02 Score=23.89 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=16.3
Q ss_pred eEEEEccCceeeecCHHHHHHHHHH
Q 031977 83 KVLVDIGTGYFVEKTMDEGKDYCER 107 (150)
Q Consensus 83 ~VlV~lG~g~~vE~~~~eA~~~l~r 107 (150)
.|+||.|+|.+-+...+..++.+.+
T Consensus 2 ~iiVHgGAG~~~~~~~~~~~~~l~~ 26 (303)
T cd04514 2 FVAVHAGAGYHSHSNEKEYKEACKR 26 (303)
T ss_pred eEEEEcCCCCCchhhHHHHHHHHHH
Confidence 4899999999775544444444433
No 349
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=21.82 E-value=22 Score=24.09 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 031977 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRP 59 (150)
Q Consensus 13 ~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~ 59 (150)
++++|..+++.+-..+..--+.-..+...+.+|.+....|+.++.++
T Consensus 11 ni~eLi~fY~ky~~~~~L~~~~r~~~d~~i~~y~~~~~lVDGvPaQG 57 (85)
T PF07240_consen 11 NIQELIAFYEKYSPRLPLTPQDRQRIDRFIRRYKEENNLVDGVPAQG 57 (85)
T ss_pred hHHHHHHHHHHcCccCCCCHHHHHHHHHHHHHHHHHhhcccCcCCCC
Confidence 47888888888755433333455667777888887776777777543
No 350
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=21.80 E-value=63 Score=25.48 Aligned_cols=50 Identities=12% Similarity=0.207 Sum_probs=32.1
Q ss_pred ceeEeEEEcCCCeE-----EEEccCceeeecCHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 71 SLYVPGTLDDARKV-----LVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLI 120 (150)
Q Consensus 71 ~~yv~g~i~~~~~V-----lV~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~ 120 (150)
-+|+.....|++-| .+..++-=|..++.++|.+-+.+|++..++..+.+.
T Consensus 125 vlFIEsic~D~~ii~~NI~~~~~~spDY~~~~~e~A~~Df~~RI~~Ye~~YEpl~ 179 (222)
T PF01591_consen 125 VLFIESICDDPEIIERNIREKKQNSPDYKGMDPEEAIEDFKKRIEHYEKVYEPLD 179 (222)
T ss_dssp EEEEEEE---HHHHHHHHHHHHTTSGGGTTS-HHHHHHHHHHHHHHHHTT-----
T ss_pred EEEEEEEeCCHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHhhcccccccc
Confidence 36888777765422 234566778999999999999999999999888775
No 351
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=21.80 E-value=3.3e+02 Score=19.96 Aligned_cols=45 Identities=18% Similarity=0.204 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031977 99 DEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQ 143 (150)
Q Consensus 99 ~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~ 143 (150)
.+...-+++++..|+..+..+++.-......+..+...++....+
T Consensus 28 ~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~ 72 (146)
T PF08702_consen 28 DKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQ 72 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccc
Confidence 344455667777777777777777777777677776666655543
No 352
>PRK08453 fliD flagellar capping protein; Validated
Probab=21.77 E-value=1.8e+02 Score=26.99 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 031977 99 DEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLAP 146 (150)
Q Consensus 99 ~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~~ 146 (150)
..-.+-|.++++.++++++.+++.|..+...+..--..|+..+.++..
T Consensus 620 ~~~~~sL~~q~k~L~~q~~~~e~rL~~ry~rl~~qFsAmDs~IsqmNs 667 (673)
T PRK08453 620 KIYEDSLTRDAKSLTKDKENAQELLKTRYDIMAERFAAYDSQISKANQ 667 (673)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334556777777788877777777776665555555555555555443
No 353
>smart00338 BRLZ basic region leucin zipper.
Probab=21.74 E-value=2.1e+02 Score=17.56 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 111 LLKSNFDQLIEVATKKKTISDEAAVILQ 138 (150)
Q Consensus 111 ~l~~~~~~l~~~l~~~~~~~~~v~~~i~ 138 (150)
.|+..+..+......+...+..+...+.
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~ 57 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELE 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 354
>cd01110 HTH_SoxR Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator. Helix-turn-helix (HTH) transcriptional regulator SoxR. The global regulator, SoxR, up-regulates gene expression of another transcription activator, SoxS, which directly stimulates the oxidative stress regulon genes in E. coli. The soxRS response renders the bacterial cell resistant to superoxide-generating agents, macrophage-generated nitric oxide, organic solvents, and antibiotics. The SoxR proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the unusually long spacer between the -35 and -10 promoter elements. They also harbor a regulatory C-terminal domain containing an iron-sulfur center.
Probab=21.65 E-value=3.1e+02 Score=19.65 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=23.1
Q ss_pred cCHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 96 KTMDEGKDYCER-----------KINLLKSNFDQLIEVATKKKTISDEAAVIL 137 (150)
Q Consensus 96 ~~~~eA~~~l~r-----------r~~~l~~~~~~l~~~l~~~~~~~~~v~~~i 137 (150)
+|+++..+++.. ....+...+..+.+.+.+++...+.+...+
T Consensus 58 ~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i 110 (139)
T cd01110 58 LSLAEIAEALATLPEDRTPTKADWERLSRAWRDRLDERIAELQQLRDQLDGCI 110 (139)
T ss_pred CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777752 223444445555555555555555554444
No 355
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=21.57 E-value=2.2e+02 Score=17.92 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 031977 16 QLKAIKEQTDLEVNLLQ-DSLNNIRTATSRLESA 48 (150)
Q Consensus 16 qL~~~~~ql~~e~~~l~-~~~~~L~~~~~e~~~~ 48 (150)
+...+.++.+-|+..+. .....+...+..|..-
T Consensus 36 ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~ 69 (79)
T PF05008_consen 36 EAEELLKQMELEVRSLPPSERNQYKSKLRSYRSE 69 (79)
T ss_dssp HHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 33444444444444443 2223333344444333
No 356
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=21.56 E-value=4.6e+02 Score=23.85 Aligned_cols=35 Identities=17% Similarity=0.434 Sum_probs=24.1
Q ss_pred ccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 88 IGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEV 122 (150)
Q Consensus 88 lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~ 122 (150)
+|.|||..-.-.---+...+|...|+++...-.+.
T Consensus 373 vg~gfffkdeqkaedema~kraallekqqrraeea 407 (708)
T KOG3654|consen 373 VGLGFFFKDEQKAEDEMAQKRAALLEKQQRRAEEA 407 (708)
T ss_pred cceeeeeccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 68899986555555567778888887776654443
No 357
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=21.53 E-value=2.2e+02 Score=19.61 Aligned_cols=47 Identities=11% Similarity=0.034 Sum_probs=21.6
Q ss_pred EccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 87 DIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAA 134 (150)
Q Consensus 87 ~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~ 134 (150)
=+|.|+|+..... -++-+..+.+...+.+..-...+..++..+....
T Consensus 13 vl~L~~~l~~qs~-~i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r 59 (110)
T PF10828_consen 13 VLGLGGWLWYQSQ-RIDRLRAENKAQAQTIQQQEDANQELKAQLQQNR 59 (110)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666554332 2444444444444444444444445544444433
No 358
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.40 E-value=3.6e+02 Score=20.22 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 99 DEGKDYCERKINLLKSNFDQLIEVATKKKTISDEA 133 (150)
Q Consensus 99 ~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v 133 (150)
++..+-.+..++.+++.+++.+.++..++.|...+
T Consensus 153 ~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555544443
No 359
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=21.40 E-value=1.9e+02 Score=22.14 Aligned_cols=30 Identities=17% Similarity=0.372 Sum_probs=21.0
Q ss_pred eeEeEEEc--CCCeEEEEcc-CceeeecCHHHH
Q 031977 72 LYVPGTLD--DARKVLVDIG-TGYFVEKTMDEG 101 (150)
Q Consensus 72 ~yv~g~i~--~~~~VlV~lG-~g~~vE~~~~eA 101 (150)
.|++|++. +++.++|++| -||-|-.|....
T Consensus 3 ~~l~G~v~~~~~~~~ii~~~GvGY~v~v~~~~~ 35 (186)
T PRK14600 3 GSLSGIVEEVRSDYIILNVGNVGYIVYLSAKVL 35 (186)
T ss_pred ceEEEEEEEEcCCEEEEEECCEEEEEEecHHHH
Confidence 36777775 4677888876 488888776444
No 360
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=21.26 E-value=6.2e+02 Score=22.94 Aligned_cols=43 Identities=9% Similarity=0.088 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 97 TMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQA 139 (150)
Q Consensus 97 ~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~ 139 (150)
...+..+-+++++..++..++.+...+..++.++..+...+.+
T Consensus 425 ~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 425 QLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777777777777777777777777766666544
No 361
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=21.17 E-value=4e+02 Score=25.01 Aligned_cols=123 Identities=12% Similarity=0.146 Sum_probs=66.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEE
Q 031977 9 MEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLES-ASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVD 87 (150)
Q Consensus 9 l~~l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~-~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~ 87 (150)
....+.+.|....=.|..-+..=+.+|.+|++.+.--+. |--||.+|+..=++-..||.=+-. =.+-+++.=..
T Consensus 580 ~~d~d~e~l~eqilKLKSLLSTKREQIaTLRTVLKANKqTAEvALanLKsKYE~EK~~v~etm~-kLRnELK~LKE---- 654 (717)
T PF09730_consen 580 EADKDKEELQEQILKLKSLLSTKREQIATLRTVLKANKQTAEVALANLKSKYENEKAMVSETMM-KLRNELKALKE---- 654 (717)
T ss_pred cccccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHHHH----
Confidence 345566666666667777777777777777776554432 233455554311121222211100 00000100000
Q ss_pred ccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 88 IGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLK 142 (150)
Q Consensus 88 lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~ 142 (150)
+ =-|+..=...|..|.+.+-.++++++..++....+-+++...|+-.++
T Consensus 655 ---D---AATFsSlRamFa~RCdEYvtQldemqrqL~aAEdEKKTLNsLLRmAIQ 703 (717)
T PF09730_consen 655 ---D---AATFSSLRAMFAARCDEYVTQLDEMQRQLAAAEDEKKTLNSLLRMAIQ 703 (717)
T ss_pred ---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 0 002333345678889999999999999999888888877666555444
No 362
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.15 E-value=1.2e+02 Score=18.61 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031977 105 CERKINLLKSNFDQLIEVATK 125 (150)
Q Consensus 105 l~rr~~~l~~~~~~l~~~l~~ 125 (150)
..++++.+++.++++++++++
T Consensus 46 ~r~~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555543
No 363
>KOG1592 consensus Asparaginase [Amino acid transport and metabolism]
Probab=21.04 E-value=1.7e+02 Score=24.63 Aligned_cols=32 Identities=28% Similarity=0.190 Sum_probs=25.7
Q ss_pred eEEEEccCceeeecCHHHHHHHHHHHHHHHHH
Q 031977 83 KVLVDIGTGYFVEKTMDEGKDYCERKINLLKS 114 (150)
Q Consensus 83 ~VlV~lG~g~~vE~~~~eA~~~l~rr~~~l~~ 114 (150)
-|+|+.|+||+......+++..+.+.....-.
T Consensus 5 ~v~vh~Gag~~~~~~~~~~k~~~~~a~~~a~~ 36 (326)
T KOG1592|consen 5 FVAVHGGAGYHSAEREIEAKHVLRRACFLAIL 36 (326)
T ss_pred eEEEeeccccchhhhHHHHHHHHHHHHHhhhH
Confidence 48899999999999888888888776655433
No 364
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=21.01 E-value=2.4e+02 Score=18.02 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRL 45 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~ 45 (150)
+++|....++|..+-..|.++...+......+
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L 40 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWREERAQL 40 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888777776654443
No 365
>KOG2826 consensus Actin-related protein Arp2/3 complex, subunit ARPC2 [Cytoskeleton]
Probab=21.00 E-value=1.8e+02 Score=23.66 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=25.8
Q ss_pred CCCeEEEEccCceeeecCHHHHHHHHHHHH
Q 031977 80 DARKVLVDIGTGYFVEKTMDEGKDYCERKI 109 (150)
Q Consensus 80 ~~~~VlV~lG~g~~vE~~~~eA~~~l~rr~ 109 (150)
|..+|+++|..-+|.|.-..-|.+.|++--
T Consensus 51 dktkillSislK~y~elq~~Ga~~LLk~~y 80 (301)
T KOG2826|consen 51 DKTKILLSISLKFYKELQLHGADDLLKRVY 80 (301)
T ss_pred CceEEEEEEehhhHHHHHHcCHHHHHHHHh
Confidence 345999999999999999999999887753
No 366
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=20.95 E-value=2.6e+02 Score=18.44 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 17 LKAIKEQTDLEVNLLQDSLNNIRTATSRLE 46 (150)
Q Consensus 17 L~~~~~ql~~e~~~l~~~~~~L~~~~~e~~ 46 (150)
|..+.+.+.+|.+.+...+..++....+|+
T Consensus 2 l~elLd~ir~Ef~~~~~e~~~~k~~~~e~e 31 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQEANSYKHQKDEYE 31 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 456666666666667666655555444444
No 367
>PRK12765 flagellar capping protein; Provisional
Probab=20.89 E-value=2.5e+02 Score=25.46 Aligned_cols=36 Identities=11% Similarity=0.104 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 105 CERKINLLKSNFDQLIEVATKKKTISDEAAVILQAK 140 (150)
Q Consensus 105 l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~ 140 (150)
|..|.+.+++.++.+.+++.....++...+..++.+
T Consensus 530 l~~~~~~l~~~~~~l~~~~~~~~~rl~~~~~r~~~q 565 (595)
T PRK12765 530 LTKYDESLTNEIKSLTTSKESTQELIDTKYETMANK 565 (595)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555554443
No 368
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=20.89 E-value=2.9e+02 Score=20.90 Aligned_cols=7 Identities=29% Similarity=0.221 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 031977 45 LESASTA 51 (150)
Q Consensus 45 ~~~~~e~ 51 (150)
+..|...
T Consensus 147 ~~~A~~~ 153 (176)
T PRK03578 147 DQAAAEA 153 (176)
T ss_pred HHHHHHH
Confidence 3333333
No 369
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=20.82 E-value=4.7e+02 Score=21.36 Aligned_cols=10 Identities=10% Similarity=0.328 Sum_probs=4.5
Q ss_pred ceeEeEEEcC
Q 031977 71 SLYVPGTLDD 80 (150)
Q Consensus 71 ~~yv~g~i~~ 80 (150)
.+|+.+.|+.
T Consensus 244 ~l~v~~~v~e 253 (346)
T PRK10476 244 HWYAIANFRE 253 (346)
T ss_pred CEEEEEEEcH
Confidence 3444444443
No 370
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=20.80 E-value=1.6e+02 Score=18.61 Aligned_cols=33 Identities=18% Similarity=0.032 Sum_probs=23.8
Q ss_pred CCceeEeEEEc--CCCeEEEEccCceeeecCHHHH
Q 031977 69 TASLYVPGTLD--DARKVLVDIGTGYFVEKTMDEG 101 (150)
Q Consensus 69 g~~~yv~g~i~--~~~~VlV~lG~g~~vE~~~~eA 101 (150)
..|-.|.|+|. ..+.++|++|.++..-.+..+.
T Consensus 5 ~~GdiV~G~V~~v~~~~~~V~i~~~~~g~l~~~~~ 39 (82)
T cd04454 5 DVGDIVIGIVTEVNSRFWKVDILSRGTARLEDSSA 39 (82)
T ss_pred CCCCEEEEEEEEEcCCEEEEEeCCCceEEeechhc
Confidence 34567778886 5789999999887666665543
No 371
>PF02410 Oligomerisation: Oligomerisation domain; InterPro: IPR004394 The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. Maize has two RNA polymerases in plastids, but the plastid-encoded one, similar to bacterial RNA polymerases, is missing in iojap mutants. The role of iojap in chloroplast development, and the role of its bacterial orthologs modeled here, is unclear [, ]. This entry contains the bacterial protein YbeB (P0AAT6 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2O5A_A 2ID1_B 3UPS_A.
Probab=20.80 E-value=95 Score=21.05 Aligned_cols=27 Identities=33% Similarity=0.535 Sum_probs=22.5
Q ss_pred cCCCeEEEEccCceeeecCHHHHHHHHH
Q 031977 79 DDARKVLVDIGTGYFVEKTMDEGKDYCE 106 (150)
Q Consensus 79 ~~~~~VlV~lG~g~~vE~~~~eA~~~l~ 106 (150)
...+.++||.| +++|=.=.+++++|++
T Consensus 69 ~~~~W~lvD~g-~ivVHif~~e~R~~Y~ 95 (100)
T PF02410_consen 69 DESDWVLVDYG-DIVVHIFTPEAREYYD 95 (100)
T ss_dssp TTTSEEEEEES-SEEEEEEEHHHHHHHC
T ss_pred CCCCEEEEccc-EEEEEcCCHHHHhHcC
Confidence 56789999998 8888888888888764
No 372
>COG4013 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.74 E-value=1.4e+02 Score=20.28 Aligned_cols=43 Identities=12% Similarity=0.199 Sum_probs=25.8
Q ss_pred HHHHHHHHhhccCC-CCCceEEEecCCceeEeEEEcCCCeEEEEc
Q 031977 45 LESASTALHDLSLR-PQGAKMLVPLTASLYVPGTLDDARKVLVDI 88 (150)
Q Consensus 45 ~~~~~e~l~~L~~~-~~~~eilvplg~~~yv~g~i~~~~~VlV~l 88 (150)
.....+.++.++.. +.|..+-+.+|- +|+||++...+.-++.+
T Consensus 7 ~~~peEl~eY~~eeV~~gd~vel~~gr-VhIpG~vv~~n~g~l~l 50 (91)
T COG4013 7 VKNPEELIEYLNEEVDVGDYVELYFGR-VHIPGRVVHYNDGLLRL 50 (91)
T ss_pred hcCHHHHHHHHHhcCCCCCEEEEEEEE-EEeccEEEEeeccEEEE
Confidence 34455566666522 335455566654 89999998766555443
No 373
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=20.70 E-value=4e+02 Score=20.53 Aligned_cols=58 Identities=12% Similarity=0.188 Sum_probs=34.5
Q ss_pred CeEEEEccCceeeecCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 82 RKVLVDIGTGYFVEKTMDEGK------DYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQA 139 (150)
Q Consensus 82 ~~VlV~lG~g~~vE~~~~eA~------~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~ 139 (150)
.-|+-.||.|++|=...-.+. +-=...+..|+..++++...+++++..+..+...+..
T Consensus 75 E~~iF~vggg~lv~Ey~R~~~~e~~kee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~ 138 (181)
T KOG3335|consen 75 ELFIFSVGGGVLVFEYWRQARKERKKEEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNK 138 (181)
T ss_pred hHHheeecceeeeehhHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456677777777644333322 2223445666677777777777777777776654443
No 374
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=20.66 E-value=3.4e+02 Score=22.98 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=17.2
Q ss_pred ceEEEecCCceeEeEEEcCCCeE
Q 031977 62 AKMLVPLTASLYVPGTLDDARKV 84 (150)
Q Consensus 62 ~eilvplg~~~yv~g~i~~~~~V 84 (150)
..+.+|+..++.+.|-..+.-+|
T Consensus 47 ~~~~lP~~p~~~~~~i~~~~~~v 69 (353)
T cd05166 47 NKCRLPLNPALDVKGIDVRECSY 69 (353)
T ss_pred CCCccCCCCceEEEeEEcCceEE
Confidence 46889999998888877654444
No 375
>COG1766 fliF Flagellar basal body M-ring protein [Cell motility and secretion]
Probab=20.61 E-value=3.1e+02 Score=24.79 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecC-CceeEeEEEcCCCeEEEEccCceeeecCHHHHHHHH
Q 031977 34 SLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLT-ASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYC 105 (150)
Q Consensus 34 ~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg-~~~yv~g~i~~~~~VlV~lG~g~~vE~~~~eA~~~l 105 (150)
++.--+.-..++...+.+|+..+ ...+++-|- .++|+...-+.+-.|+|.+..|.-...+--.|+..|
T Consensus 129 ~v~~~RAlegELartI~~l~~V~----~ArVhl~lPk~s~Fv~~q~~psASV~l~l~pG~~l~~~qV~aI~~L 197 (545)
T COG1766 129 QVNYQRALEGELARTIVAIDGVK----AARVHLVLPKDSLFVRDQQPPSASVVLKLKPGRNLSREQVRAIVHL 197 (545)
T ss_pred HHHHHHHHHHHHHHHHHHhhchh----heeEEEecCCcchhhcccCCCceEEEEEccCCCCCCHHHHHHHHHH
Confidence 33334445567777777777765 235555555 578999988889999999999985555554555443
No 376
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=20.57 E-value=2.3e+02 Score=17.67 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 105 CERKINLLKSNFDQLIEVATKKKTISD 131 (150)
Q Consensus 105 l~rr~~~l~~~~~~l~~~l~~~~~~~~ 131 (150)
++.|+..|+..+...++.+..-+.++.
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666655555555444
No 377
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=20.54 E-value=5e+02 Score=21.55 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 105 CERKINLLKSNFDQLIEVATKKKTISDE 132 (150)
Q Consensus 105 l~rr~~~l~~~~~~l~~~l~~~~~~~~~ 132 (150)
|+-|++.|-..-+.|...+..++.++..
T Consensus 217 LDvRLkKl~~eke~L~~qv~klk~qLee 244 (302)
T PF09738_consen 217 LDVRLKKLADEKEELLEQVRKLKLQLEE 244 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777666666644
No 378
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.51 E-value=2.1e+02 Score=22.82 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=30.0
Q ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 94 VEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKT 128 (150)
Q Consensus 94 vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~ 128 (150)
-|....+|..+|+.-|+.|+.+++.+...+..+..
T Consensus 116 ~e~ek~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~ 150 (233)
T PF04065_consen 116 KEKEKEEARDWLKDSIDELNRQIEQLEAEIESLSS 150 (233)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999886543
No 379
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=20.49 E-value=3.9e+02 Score=20.27 Aligned_cols=28 Identities=7% Similarity=0.122 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 107 RKINLLKSNFDQLIEVATKKKTISDEAA 134 (150)
Q Consensus 107 rr~~~l~~~~~~l~~~l~~~~~~~~~v~ 134 (150)
.|.+.++...+.+...++++...+..+.
T Consensus 85 ~R~~lLe~~~~~l~~ri~eLe~~l~~ka 112 (175)
T PRK13182 85 VDFEQLEAQLNTITRRLDELERQLQQKA 112 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555543
No 380
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=20.45 E-value=3.9e+02 Score=20.33 Aligned_cols=56 Identities=9% Similarity=0.165 Sum_probs=32.8
Q ss_pred CceeEeEEEcCCCeEEEEccCceeeecCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 031977 70 ASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINL-LKSNFDQLIEVATKKKTIS 130 (150)
Q Consensus 70 ~~~yv~g~i~~~~~VlV~lG~g~~vE~~~~eA~~~l~rr~~~-l~~~~~~l~~~l~~~~~~~ 130 (150)
+++|+|+.+.. +.+.|.|.+|-- ++. -...+.++++. +...++.+-.-+..++..+
T Consensus 106 ~~f~~Pa~~~~-g~l~iaIsT~G~---sP~-la~~lr~~ie~~~~~~~~~~~~~~~~~R~~~ 162 (202)
T PRK06718 106 GNVVFPSALHR-GKLTISVSTDGA---SPK-LAKKIRDELEALYDESYESYIDFLYECRQKI 162 (202)
T ss_pred CeEEEeeEEEc-CCeEEEEECCCC---ChH-HHHHHHHHHHHHcchhHHHHHHHHHHHHHHH
Confidence 67999999985 558888887532 333 33445555554 3444555444444444444
No 381
>PRK09939 putative oxidoreductase; Provisional
Probab=20.45 E-value=92 Score=29.13 Aligned_cols=25 Identities=4% Similarity=0.037 Sum_probs=23.1
Q ss_pred cCceeeecCHHHHHHHHHHHHHHHH
Q 031977 89 GTGYFVEKTMDEGKDYCERKINLLK 113 (150)
Q Consensus 89 G~g~~vE~~~~eA~~~l~rr~~~l~ 113 (150)
|.|-|++.|.+||.+++.+++..+.
T Consensus 118 g~~~~~~ISWdEAl~~Ia~~L~~i~ 142 (759)
T PRK09939 118 VSDCYKPLSWQQAFDEIGARLQSYS 142 (759)
T ss_pred CCCcEEEccHHHHHHHHHHHHHhhc
Confidence 7899999999999999999988774
No 382
>KOG3448 consensus Predicted snRNP core protein [RNA processing and modification]
Probab=20.31 E-value=1.1e+02 Score=20.87 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.1
Q ss_pred CceEEEecCCceeEeEEEcCCC
Q 031977 61 GAKMLVPLTASLYVPGTLDDAR 82 (150)
Q Consensus 61 ~~eilvplg~~~yv~g~i~~~~ 82 (150)
|.++-|.|-+++|+.|++...+
T Consensus 12 g~~V~VeLKnd~~i~GtL~svD 33 (96)
T KOG3448|consen 12 GKEVVVELKNDLSICGTLHSVD 33 (96)
T ss_pred CCeEEEEEcCCcEEEEEecccc
Confidence 6789999999999999987654
No 383
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=20.28 E-value=1.1e+02 Score=22.53 Aligned_cols=52 Identities=10% Similarity=0.054 Sum_probs=43.6
Q ss_pred EccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 87 DIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQA 139 (150)
Q Consensus 87 ~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~ 139 (150)
|+..-|++|+-..+|..-+. |...-.+....+..-+.+.+.++..++.+++.
T Consensus 7 ~L~d~y~aE~Q~~~al~~m~-~~a~~peLk~~l~~H~~eT~~qi~rLe~if~~ 58 (147)
T cd07909 7 ELRDLYSAEKQLVKALPKMA-KAATSEELKEAFESHLEETEGQVERLEQIFES 58 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888888887 77888888888899999999999999888875
No 384
>TIGR02544 III_secr_YscJ type III secretion apparatus lipoprotein, YscJ/HrcJ family. All members of this protein family are predicted lipoproteins with a conserved Cys near the N-terminus for cleavage and modification, and are part of known or predicted type III secretion systems. Members are found in both plant and animal pathogens, including the obligately intracellular chlamydial species and (non-pathogenic) root nodule bacteria. The most closely related proteins outside this family are examples of the flagellar M-ring protein FliF.
Probab=20.26 E-value=4e+02 Score=20.37 Aligned_cols=60 Identities=13% Similarity=0.174 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCC-ceeEeEEEcCCCeEEEEccCceeee
Q 031977 32 QDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA-SLYVPGTLDDARKVLVDIGTGYFVE 95 (150)
Q Consensus 32 ~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~-~~yv~g~i~~~~~VlV~lG~g~~vE 95 (150)
.++..-......++..+++.++.... ..+.+-+.. +.|..-.-+.+-.|+|.+..|.-..
T Consensus 99 ~e~~~~~~ale~EL~rtI~~i~~V~~----ArVhl~~P~~~~f~~~~~~~sASV~l~~~~g~~l~ 159 (193)
T TIGR02544 99 EERARYLYAIEQRLEQTLSQIDGVIS----ARVHVVLPENDNNGRPKKPSSASVFIKYRPGLNLD 159 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeee----eEEEEECCCCCcccccCCCCcEEEEEEeCCCCCcH
Confidence 33444445566778788888777652 344444443 3777766667778999998887544
No 385
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=20.25 E-value=3.4e+02 Score=25.36 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEA 133 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v 133 (150)
.+.|.+-+.+|++.+...++....++.++++.+..+
T Consensus 556 ~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l 591 (717)
T PF10168_consen 556 QDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSL 591 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777766666555555555555554
No 386
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=20.16 E-value=56 Score=25.38 Aligned_cols=12 Identities=33% Similarity=0.720 Sum_probs=6.2
Q ss_pred CCeEEEEccCce
Q 031977 81 ARKVLVDIGTGY 92 (150)
Q Consensus 81 ~~~VlV~lG~g~ 92 (150)
++.|++|||+|.
T Consensus 42 ~~dvF~DlGSG~ 53 (205)
T PF08123_consen 42 PDDVFYDLGSGV 53 (205)
T ss_dssp TT-EEEEES-TT
T ss_pred CCCEEEECCCCC
Confidence 345777777663
No 387
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=20.11 E-value=2.9e+02 Score=20.65 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 99 DEGKDYCERKINLLKSNFDQLIEVATKKKTISDE 132 (150)
Q Consensus 99 ~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~ 132 (150)
+++...+..++..+++.+..++.....+..-+..
T Consensus 73 ~~~~~~L~~~~~~l~~ei~~L~~~~~~l~~ll~~ 106 (172)
T cd04790 73 DDATDVLRRRLAELNREIQRLRQQQRAIATLLKQ 106 (172)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788899999999998888888877776654
No 388
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=20.09 E-value=2e+02 Score=23.86 Aligned_cols=52 Identities=8% Similarity=0.058 Sum_probs=37.6
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 031977 95 EKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLAP 146 (150)
Q Consensus 95 E~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~~ 146 (150)
++..+-|.+-|+-+.+...+..+.+.....++...|..|.+..........|
T Consensus 200 ~~~~E~ameTlDPnAk~y~~~~~dl~~~~~ev~~~I~~l~~~~~~~~~~f~p 251 (289)
T PF05149_consen 200 HLQQERAMETLDPNAKKYSKEKKDLLEQREEVEQEINLLRDKQAKALEDFEP 251 (289)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 4556667777777777777777777788888888888877777766655443
Done!