Query 031977
Match_columns 150
No_of_seqs 126 out of 627
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 12:37:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fxk_C Protein (prefoldin); ar 100.0 1.7E-33 5.9E-38 204.3 19.5 131 13-144 2-132 (133)
2 2zdi_C Prefoldin subunit alpha 100.0 1.1E-31 3.6E-36 199.0 17.3 134 11-146 8-144 (151)
3 2zqm_A Prefoldin beta subunit 99.3 6.5E-10 2.2E-14 77.8 16.0 107 13-143 7-113 (117)
4 1fxk_A Prefoldin; archaeal pro 99.1 5.3E-09 1.8E-13 72.1 14.3 104 13-140 2-105 (107)
5 2zdi_C Prefoldin subunit alpha 97.1 0.0024 8.3E-08 46.2 8.5 101 23-142 13-133 (151)
6 1fxk_C Protein (prefoldin); ar 97.1 0.0075 2.6E-07 42.5 10.5 108 15-135 11-130 (133)
7 1gmj_A ATPase inhibitor; coile 86.9 3 0.0001 27.2 6.7 41 14-54 39-79 (84)
8 2l5g_B Putative uncharacterize 86.4 2 6.8E-05 24.4 4.9 37 12-48 2-38 (42)
9 3rrk_A V-type ATPase 116 kDa s 85.0 13 0.00044 29.5 17.7 117 13-129 93-255 (357)
10 3efg_A Protein SLYX homolog; x 84.5 5.6 0.00019 25.4 7.1 51 95-145 9-59 (78)
11 3aei_A Prefoldin beta subunit 83.8 6.8 0.00023 25.3 12.7 43 90-132 51-93 (99)
12 1l8d_A DNA double-strand break 80.4 10 0.00035 25.1 12.8 98 14-138 5-102 (112)
13 2nrj_A HBL B protein; enteroto 80.3 18 0.00061 29.2 10.3 56 86-142 213-271 (346)
14 3trt_A Vimentin; cytoskeleton, 79.3 7.1 0.00024 24.3 6.2 51 93-143 21-71 (77)
15 2yny_A General control protein 76.9 9.3 0.00032 25.9 6.4 40 96-135 65-104 (106)
16 2w6a_A ARF GTPase-activating p 76.2 10 0.00034 23.1 5.7 29 14-42 29-57 (63)
17 3swy_A Cyclic nucleotide-gated 74.1 10 0.00035 21.8 6.2 40 105-144 3-42 (46)
18 2zqm_A Prefoldin beta subunit 72.2 12 0.0004 24.8 6.1 96 14-133 15-110 (117)
19 3gp4_A Transcriptional regulat 71.7 18 0.00062 25.2 7.2 43 97-139 78-120 (142)
20 2z5i_A TM, general control pro 70.3 14 0.00047 21.7 6.4 40 102-141 7-46 (52)
21 3nmd_A CGMP dependent protein 69.9 18 0.00061 22.8 6.3 42 13-54 20-61 (72)
22 3gpv_A Transcriptional regulat 69.7 22 0.00075 24.9 7.3 10 97-106 75-84 (148)
23 3gpv_A Transcriptional regulat 68.0 10 0.00035 26.6 5.3 44 96-139 91-134 (148)
24 1fxk_A Prefoldin; archaeal pro 67.4 15 0.00052 23.9 5.8 95 14-132 10-104 (107)
25 3swf_A CGMP-gated cation chann 66.9 21 0.00073 22.6 6.8 40 105-144 5-44 (74)
26 3gp4_A Transcriptional regulat 66.9 28 0.00095 24.2 7.3 43 96-138 60-112 (142)
27 1q08_A Zn(II)-responsive regul 65.6 23 0.00079 22.5 7.3 30 98-127 37-66 (99)
28 2akf_A Coronin-1A; coiled coil 65.5 8.6 0.0003 20.0 3.2 29 111-139 3-31 (32)
29 3m9b_A Proteasome-associated A 65.3 26 0.0009 27.2 7.4 69 16-97 58-127 (251)
30 2lme_A Adhesin YADA; trimeric 64.8 28 0.00095 23.1 7.2 46 28-73 18-63 (105)
31 2yy0_A C-MYC-binding protein; 63.7 17 0.00059 21.4 4.8 39 100-138 2-43 (53)
32 3f1i_H Hepatocyte growth facto 62.6 25 0.00085 23.4 5.9 38 15-56 48-85 (98)
33 2oqq_A Transcription factor HY 61.5 20 0.00067 20.2 5.8 34 104-137 7-40 (42)
34 1deq_A Fibrinogen (alpha chain 60.8 18 0.00063 29.8 6.0 55 90-144 50-104 (390)
35 1q08_A Zn(II)-responsive regul 59.7 30 0.001 22.0 6.0 42 96-137 17-69 (99)
36 3ghg_A Fibrinogen alpha chain; 58.9 24 0.00082 30.4 6.6 52 91-142 106-159 (562)
37 1q06_A Transcriptional regulat 58.0 42 0.0014 22.9 7.2 42 96-137 58-109 (135)
38 1r8d_A Transcription activator 57.4 36 0.0012 22.2 6.2 42 96-137 60-105 (109)
39 1m1j_C Fibrinogen gamma chain; 55.2 89 0.003 25.9 10.3 35 21-55 33-67 (409)
40 3q0x_A Centriole protein; cent 54.8 38 0.0013 25.9 6.6 60 83-143 148-207 (228)
41 2pnv_A Small conductance calci 53.2 22 0.00074 20.1 3.8 18 104-121 20-37 (43)
42 2v71_A Nuclear distribution pr 52.0 53 0.0018 24.4 6.8 49 96-144 6-54 (189)
43 2yo3_A General control protein 51.7 43 0.0015 26.3 6.5 44 97-140 206-249 (268)
44 2vz4_A Tipal, HTH-type transcr 50.7 30 0.001 22.6 4.9 41 96-136 59-103 (108)
45 2efr_A General control protein 50.3 67 0.0023 23.0 7.1 42 102-143 93-134 (155)
46 2l5g_B Putative uncharacterize 49.5 33 0.0011 19.3 5.5 29 107-135 9-37 (42)
47 3mud_A DNA repair protein XRCC 49.4 75 0.0026 23.3 7.9 78 63-143 86-171 (175)
48 3iv1_A Tumor susceptibility ge 49.3 49 0.0017 21.1 5.7 35 20-54 12-46 (78)
49 2akf_A Coronin-1A; coiled coil 48.5 28 0.00095 18.1 5.0 25 24-48 4-28 (32)
50 2wg5_A General control protein 47.8 42 0.0014 22.4 5.3 7 81-87 49-55 (109)
51 1r8e_A Multidrug-efflux transp 47.2 61 0.0021 24.3 6.8 43 96-138 64-110 (278)
52 4ioe_A Secreted protein ESXB; 46.3 50 0.0017 20.4 5.4 34 11-44 8-41 (93)
53 2w6b_A RHO guanine nucleotide 45.8 46 0.0016 19.8 7.3 53 91-143 1-53 (56)
54 3gwk_C SAG1039, putative uncha 45.3 54 0.0019 20.5 6.4 87 11-138 7-93 (98)
55 3fx7_A Putative uncharacterize 44.6 52 0.0018 21.7 5.2 31 11-41 5-35 (94)
56 3zbh_A ESXA; unknown function, 44.4 54 0.0019 20.3 6.3 87 11-138 8-94 (99)
57 2dfs_A Myosin-5A; myosin-V, in 44.1 1.4E+02 0.0048 27.8 9.8 33 23-55 957-989 (1080)
58 2yy0_A C-MYC-binding protein; 43.5 25 0.00085 20.6 3.2 17 29-45 29-45 (53)
59 1q06_A Transcriptional regulat 42.3 69 0.0023 21.8 5.9 37 97-133 76-112 (135)
60 1ixr_A Holliday junction DNA h 42.1 29 0.001 25.6 4.1 29 72-100 3-34 (191)
61 3ghg_A Fibrinogen alpha chain; 41.8 56 0.0019 28.2 6.2 45 96-140 106-150 (562)
62 1zxa_A CGMP-dependent protein 41.5 61 0.0021 20.0 4.9 45 96-140 14-58 (67)
63 3cve_A Homer protein homolog 1 40.3 67 0.0023 20.1 6.8 39 105-143 19-57 (72)
64 2gr7_A Adhesin; trimeric autot 39.2 93 0.0032 21.5 7.5 67 23-89 36-110 (129)
65 3cvf_A Homer-3, homer protein 39.0 74 0.0025 20.2 6.8 39 105-143 25-63 (79)
66 1cuk_A RUVA protein; DNA repai 38.6 30 0.001 25.8 3.7 28 72-99 3-33 (203)
67 2jo8_A Serine/threonine-protei 38.3 60 0.002 19.0 4.5 29 9-37 7-39 (51)
68 2vs0_A Virulence factor ESXA; 37.9 70 0.0024 19.7 6.4 35 11-45 5-39 (97)
69 3htk_A Structural maintenance 37.9 59 0.002 18.8 7.7 42 97-138 2-43 (60)
70 3hh0_A Transcriptional regulat 37.4 1E+02 0.0034 21.3 7.3 30 99-128 79-108 (146)
71 1p9i_A Cortexillin I/GCN4 hybr 36.6 43 0.0015 17.0 2.9 22 15-36 2-23 (31)
72 1r8e_A Multidrug-efflux transp 36.1 1.1E+02 0.0039 22.7 6.8 39 98-136 77-115 (278)
73 1r8d_A Transcription activator 34.5 46 0.0016 21.7 3.8 31 100-130 75-105 (109)
74 2zhg_A Redox-sensitive transcr 34.0 70 0.0024 22.4 4.9 24 111-134 94-117 (154)
75 3qao_A LMO0526 protein, MERR-l 33.9 1.2E+02 0.0041 23.0 6.6 43 96-138 61-107 (249)
76 1l8d_A DNA double-strand break 33.8 97 0.0033 20.1 6.7 38 101-138 4-41 (112)
77 3hh0_A Transcriptional regulat 33.6 1.1E+02 0.0037 21.1 5.9 43 96-138 62-111 (146)
78 3efg_A Protein SLYX homolog; x 33.4 90 0.0031 19.6 5.5 42 98-139 19-60 (78)
79 1lrz_A FEMA, factor essential 32.8 1.6E+02 0.0053 23.8 7.5 31 92-122 239-269 (426)
80 1gk4_A Vimentin; intermediate 32.5 94 0.0032 19.5 6.4 41 93-133 12-52 (84)
81 2e5q_A PHD finger protein 19; 32.2 55 0.0019 20.0 3.4 24 59-82 9-32 (63)
82 1hjb_A Ccaat/enhancer binding 32.1 82 0.0028 20.3 4.6 28 18-45 42-69 (87)
83 2wuj_A Septum site-determining 32.1 78 0.0027 18.5 4.2 34 13-46 21-54 (57)
84 4hcz_A PHD finger protein 1; p 31.7 29 0.00098 20.9 2.1 33 59-91 5-41 (58)
85 1pd7_B MAD1; PAH2, SIN3, eukar 31.4 44 0.0015 16.8 2.4 13 99-111 9-21 (26)
86 1nkp_B MAX protein, MYC proto- 31.1 97 0.0033 19.2 6.3 36 98-137 42-77 (83)
87 2w83_C C-JUN-amino-terminal ki 30.9 82 0.0028 20.0 4.2 34 21-54 32-65 (77)
88 3mq7_A Bone marrow stromal ant 30.8 1.3E+02 0.0045 20.6 6.8 33 106-138 70-102 (121)
89 1yke_B RNA polymerase II holoe 30.1 1.5E+02 0.005 21.0 6.2 38 106-143 91-128 (151)
90 2wq1_A General control protein 29.8 67 0.0023 17.0 4.4 28 109-136 2-29 (33)
91 1jnm_A Proto-oncogene C-JUN; B 29.7 89 0.003 18.4 4.2 25 111-135 26-50 (62)
92 3q0x_A Centriole protein; cent 29.6 1.4E+02 0.0046 22.8 6.1 57 86-142 157-213 (228)
93 3kin_B Kinesin heavy chain; mo 29.5 1.3E+02 0.0044 20.2 6.0 36 10-45 80-115 (117)
94 1a93_B MAX protein, coiled coi 29.4 70 0.0024 17.1 3.6 23 116-138 9-31 (34)
95 3ibp_A Chromosome partition pr 29.1 1.8E+02 0.0062 23.1 6.9 45 13-57 11-55 (302)
96 3nmd_A CGMP dependent protein 29.0 1.1E+02 0.0037 19.1 7.2 41 98-138 21-64 (72)
97 2dgc_A Protein (GCN4); basic d 29.0 96 0.0033 18.5 4.6 29 109-137 32-60 (63)
98 3t98_B Nucleoporin NUP58/NUP45 28.5 1.1E+02 0.0038 19.9 4.8 31 102-132 7-37 (93)
99 1ykh_B RNA polymerase II holoe 28.4 1.5E+02 0.005 20.4 6.2 35 107-141 92-126 (132)
100 2r2v_A GCN4 leucine zipper; co 28.2 74 0.0025 17.0 4.4 30 108-137 2-31 (34)
101 2dfs_A Myosin-5A; myosin-V, in 28.2 3.7E+02 0.013 25.0 13.6 30 99-128 1015-1044(1080)
102 3c3f_A Alpha/beta peptide with 28.1 74 0.0025 16.9 3.8 30 108-137 2-31 (34)
103 2wt7_A Proto-oncogene protein 27.9 99 0.0034 18.3 6.6 26 17-42 28-53 (63)
104 4dyl_A Tyrosine-protein kinase 27.9 1.8E+02 0.0063 23.4 7.1 43 100-142 302-344 (406)
105 2z1c_A Hydrogenase expression/ 27.6 59 0.002 20.4 3.2 27 79-106 37-63 (75)
106 3d3r_A Hydrogenase assembly ch 27.0 33 0.0011 23.0 2.0 44 62-106 38-87 (103)
107 2vz4_A Tipal, HTH-type transcr 27.0 48 0.0016 21.6 2.8 31 100-130 74-104 (108)
108 1ik9_A DNA repair protein XRCC 26.9 2E+02 0.0067 21.5 6.9 34 21-54 141-174 (213)
109 4a3a_A Amphiphysin; structural 26.8 33 0.0011 26.1 2.3 67 65-134 2-72 (243)
110 3oja_B Anopheles plasmodium-re 26.4 2.8E+02 0.0095 23.0 13.1 42 103-144 540-581 (597)
111 2v4h_A NF-kappa-B essential mo 26.1 1.5E+02 0.0053 20.0 6.5 53 5-57 17-69 (110)
112 2gyq_A YCFI, putative structur 26.1 51 0.0018 23.8 3.1 55 84-139 17-71 (173)
113 2ke4_A CDC42-interacting prote 26.0 1.4E+02 0.0049 19.5 5.2 29 107-135 15-43 (98)
114 3tee_A Flagella basal BODY P-r 26.0 93 0.0032 23.2 4.6 37 55-91 165-201 (219)
115 1m1j_A Fibrinogen alpha subuni 25.8 2.3E+02 0.0077 24.0 7.2 45 97-141 115-159 (491)
116 3sjb_C Golgi to ER traffic pro 25.7 1E+02 0.0036 20.2 4.2 27 105-131 54-80 (93)
117 2asy_A Protein YDHR precursor; 25.7 64 0.0022 22.3 3.3 27 88-114 71-97 (123)
118 3bbp_D GRIP and coiled-coil do 25.6 71 0.0024 19.9 3.2 50 92-141 11-63 (71)
119 1t2k_D Cyclic-AMP-dependent tr 25.5 1.1E+02 0.0037 17.9 6.7 27 111-137 26-52 (61)
120 2j5u_A MREC protein; bacterial 25.3 61 0.0021 24.8 3.5 73 14-96 21-101 (255)
121 1x8y_A Lamin A/C; structural p 25.2 1.3E+02 0.0046 18.9 6.6 41 93-133 14-54 (86)
122 3tnu_A Keratin, type I cytoske 24.8 1.7E+02 0.0057 19.9 6.4 41 92-132 62-102 (131)
123 3nr7_A DNA-binding protein H-N 24.7 1.4E+02 0.0049 19.1 7.1 40 11-50 23-62 (86)
124 3h43_A Proteasome-activating n 24.7 81 0.0028 20.0 3.5 30 66-97 17-48 (85)
125 4abm_A Charged multivesicular 24.6 1.3E+02 0.0046 18.8 5.4 32 101-133 47-78 (79)
126 3oja_B Anopheles plasmodium-re 24.6 3E+02 0.01 22.8 11.2 35 16-50 453-487 (597)
127 2hiq_A Hypothetical protein YD 24.1 50 0.0017 22.5 2.5 26 88-113 56-81 (113)
128 3jsv_C NF-kappa-B essential mo 24.0 1.6E+02 0.0054 19.3 6.6 46 12-57 2-47 (94)
129 3u06_A Protein claret segregat 23.5 2.3E+02 0.0077 23.2 6.9 36 97-132 7-42 (412)
130 1m1j_A Fibrinogen alpha subuni 23.3 1.2E+02 0.004 25.8 5.0 54 90-143 48-101 (491)
131 3oa7_A Head morphogenesis prot 23.2 2.4E+02 0.0081 21.1 6.8 30 16-45 27-56 (206)
132 3azd_A Short alpha-tropomyosin 23.2 24 0.00082 19.1 0.6 28 102-129 6-33 (37)
133 1eu1_A Dimethyl sulfoxide redu 23.1 73 0.0025 28.0 4.0 27 89-115 77-103 (780)
134 3c3g_A Alpha/beta peptide with 23.0 95 0.0032 16.4 3.8 29 109-137 2-30 (33)
135 1tmo_A TMAO reductase, trimeth 22.8 78 0.0027 28.0 4.2 27 89-115 110-136 (829)
136 2wvr_A Geminin; DNA replicatio 22.5 2.5E+02 0.0085 21.1 6.6 41 15-55 118-158 (209)
137 4i0x_B ESAT-6-like protein MAB 22.4 1.6E+02 0.0053 18.7 5.3 35 12-46 11-45 (103)
138 2vpz_A Thiosulfate reductase; 22.2 78 0.0027 27.7 4.0 25 90-114 109-133 (765)
139 2e7z_A Acetylene hydratase AHY 22.1 78 0.0027 27.5 4.0 26 89-114 71-96 (727)
140 1deq_A Fibrinogen (alpha chain 22.1 2.4E+02 0.0084 23.2 6.6 42 98-139 118-159 (390)
141 1gu4_A CAAT/enhancer binding p 21.9 1.6E+02 0.0053 18.5 4.5 16 24-39 48-63 (78)
142 1lwu_C Fibrinogen gamma chain; 21.8 2.8E+02 0.0095 22.1 6.9 41 14-54 14-54 (323)
143 2zhg_A Redox-sensitive transcr 21.7 1.8E+02 0.0061 20.2 5.2 26 101-126 91-116 (154)
144 3emo_C HIA (adhesin); transmem 21.7 2.3E+02 0.0077 20.3 8.6 80 11-90 54-144 (162)
145 2lw1_A ABC transporter ATP-bin 21.4 1.6E+02 0.0055 18.5 4.6 19 105-123 27-45 (89)
146 1zke_A Hypothetical protein HP 21.4 79 0.0027 20.1 2.8 20 20-39 53-72 (83)
147 2e5p_A Protein PHF1, PHD finge 21.2 99 0.0034 19.1 3.2 32 59-90 11-46 (68)
148 4i0x_A ESAT-6-like protein MAB 21.1 1.4E+02 0.0047 18.7 4.2 19 14-32 2-20 (94)
149 3vkg_A Dynein heavy chain, cyt 21.1 7.6E+02 0.026 26.2 14.4 47 96-142 2010-2056(3245)
150 3mq9_A Bone marrow stromal ant 20.8 2.3E+02 0.0079 22.9 6.4 51 95-145 392-442 (471)
151 2uwj_E Type III export protein 20.8 1.4E+02 0.0047 18.6 3.8 24 33-56 45-68 (70)
152 4gwp_C Mediator of RNA polymer 20.6 86 0.003 25.9 3.6 22 6-27 22-43 (407)
153 1ci6_A Transcription factor AT 20.5 1.5E+02 0.005 17.6 6.5 34 104-137 27-60 (63)
154 3hiu_A Uncharacterized protein 20.4 63 0.0022 23.3 2.6 52 88-139 11-62 (166)
155 4aj5_A SKA1, spindle and kinet 20.2 1.6E+02 0.0053 19.2 4.2 25 16-40 34-58 (91)
156 3rva_A Organophosphorus acid a 20.2 2.4E+02 0.0082 23.2 6.4 37 61-97 211-257 (451)
No 1
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=100.00 E-value=1.7e-33 Score=204.31 Aligned_cols=131 Identities=21% Similarity=0.340 Sum_probs=126.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCce
Q 031977 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGY 92 (150)
Q Consensus 13 ~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~ 92 (150)
.+++|...+++++.+++.+++++..|+..+++|..++++|+.|+. +.+.+++||||+|+||||+|+++++|+||||+||
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~-~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~ 80 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG-KDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGV 80 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CTTCEEEEEEETTEEEEEECCSTTEEEEEEETTE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCE
Confidence 489999999999999999999999999999999999999999986 5688999999999999999999999999999999
Q ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 93 FVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQL 144 (150)
Q Consensus 93 ~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~ 144 (150)
|||+|.++|++||++|++.+++.++++.+.+.+++.+++.+...|++.+++.
T Consensus 81 ~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~~ 132 (133)
T 1fxk_C 81 AIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAAV 132 (133)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999988653
No 2
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.1e-31 Score=199.00 Aligned_cols=134 Identities=17% Similarity=0.316 Sum_probs=124.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEE
Q 031977 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNI---RTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVD 87 (150)
Q Consensus 11 ~l~~~qL~~~~~ql~~e~~~l~~~~~~L---~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~ 87 (150)
+-.+++|..++++++.+++.|++++..| ...+.++..+++.|+.++. ++.+++||||+|+||||+|+++++|+||
T Consensus 8 ~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~--~~~~ilvplg~~~yv~g~i~~~~~V~v~ 85 (151)
T 2zdi_C 8 NKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEE--EKPEILVPIGAGSFLKGVIVDKNNAIVS 85 (151)
T ss_dssp TTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--SSCEEEEECSSSCEEEEECSCTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCceEEEEcCCCeEEEEEECCCCEEEEE
Confidence 4458999999999999999999999999 7777777777777777763 5789999999999999999999999999
Q ss_pred ccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 031977 88 IGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLAP 146 (150)
Q Consensus 88 lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~~ 146 (150)
||+|||||+|.++|++||++|++.+++.++.+.+.+.+++.+++.+...|++.+++.+.
T Consensus 86 lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~~ 144 (151)
T 2zdi_C 86 VGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQSM 144 (151)
T ss_dssp EETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTT
T ss_pred eCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987765
No 3
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=99.25 E-value=6.5e-10 Score=77.85 Aligned_cols=107 Identities=16% Similarity=0.181 Sum_probs=97.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCce
Q 031977 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGY 92 (150)
Q Consensus 13 ~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~ 92 (150)
..+++..-.+.+.++++.+..++..+.....++..+++.|+.+++ +..|+.++| |+
T Consensus 7 e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~---d~~vy~~iG---------------------~v 62 (117)
T 2zqm_A 7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPD---DAVVYKTVG---------------------TL 62 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCT---TCCEEEEET---------------------TE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CcHhHHHhh---------------------HH
Confidence 467888888999999999999999999999999999999999874 456777777 99
Q ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031977 93 FVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQ 143 (150)
Q Consensus 93 ~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~ 143 (150)
||+.|.++|...+++|++.++..++.+.+.+..+...+..+...|+.++++
T Consensus 63 fv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 63 IVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRP 113 (117)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999988753
No 4
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=99.10 E-value=5.3e-09 Score=72.11 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=94.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCce
Q 031977 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGY 92 (150)
Q Consensus 13 ~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~ 92 (150)
.++++..-.+++.++++.+..++..+.....++..+.+.|+.+++ +..|+.++| |+
T Consensus 2 ~~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~---d~~vy~~iG---------------------~v 57 (107)
T 1fxk_A 2 NVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAAD---DAEVYKSSG---------------------NI 57 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT---TCCEEEEET---------------------TE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CchHHHHHh---------------------HH
Confidence 367888888999999999999999999999999999999999874 456788887 89
Q ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 93 FVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAK 140 (150)
Q Consensus 93 ~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~ 140 (150)
||+.|.++|...+++|++.++..++.+.+.+..+...+..+...|+.+
T Consensus 58 fv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~ 105 (107)
T 1fxk_A 58 LIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998888754
No 5
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=97.14 E-value=0.0024 Score=46.23 Aligned_cols=101 Identities=17% Similarity=0.268 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceeee
Q 031977 23 QTDLEVNLLQDSLNNIRTATSRL-------ESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVE 95 (150)
Q Consensus 23 ql~~e~~~l~~~~~~L~~~~~e~-------~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE 95 (150)
++.+..+.++..+..|...+..+ .++.++++.|.. +.. ++..|+|++|+|+||.
T Consensus 13 ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~----------l~~---------~~~~ilvplg~~~yv~ 73 (151)
T 2zdi_C 13 KLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKK----------IEE---------EKPEILVPIGAGSFLK 73 (151)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------CCC---------SSCEEEEECSSSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------ccc---------CCceEEEEcCCCeEEE
Confidence 33444445666666666665555 344445555431 111 4567888888888888
Q ss_pred cCHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 96 KTMDEGK-------------DYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLK 142 (150)
Q Consensus 96 ~~~~eA~-------------~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~ 142 (150)
-.+++.. .-++.=++++++.++.+...+..+...+..+...+.....
T Consensus 74 g~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~ 133 (151)
T 2zdi_C 74 GVIVDKNNAIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVAR 133 (151)
T ss_dssp EECSCTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred EEECCCCEEEEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776543 2356677778888888888888888877777777655443
No 6
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=97.10 E-value=0.0075 Score=42.51 Aligned_cols=108 Identities=10% Similarity=0.202 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccC----------CCCCceEEEecCCceeEeEEEcCCC
Q 031977 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAST--ALHDLSL----------RPQGAKMLVPLTASLYVPGTLDDAR 82 (150)
Q Consensus 15 ~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e--~l~~L~~----------~~~~~eilvplg~~~yv~g~i~~~~ 82 (150)
+++....+.+.+.++.+...+..+..++..+....+ ..+.+-+ -....+++|++|.|+||.-.+.+.-
T Consensus 11 q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~eA~ 90 (133)
T 1fxk_C 11 NIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAM 90 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEeeHHHHH
Confidence 455555566666666666666666666655554331 1111100 0123467777777777777766533
Q ss_pred eEEEEccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 83 KVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAV 135 (150)
Q Consensus 83 ~VlV~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~ 135 (150)
. -+++=+++++++++.+++.+..+...+..+...+..+.+
T Consensus 91 ~-------------~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 91 E-------------SIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp H-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 234556677777777777777777777777766665543
No 7
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=86.89 E-value=3 Score=27.21 Aligned_cols=41 Identities=20% Similarity=0.325 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~ 54 (150)
.+||..|+..+..++..-...|..+...+.++...+.-|+.
T Consensus 39 kEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 39 KEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 57899999999999999999999988888887776666543
No 8
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=86.43 E-value=2 Score=24.41 Aligned_cols=37 Identities=19% Similarity=0.421 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESA 48 (150)
Q Consensus 12 l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~ 48 (150)
+|-++|.+-.+.++.|++.-.+.|..|+..+.++.++
T Consensus 2 ~tk~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 2 LSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567899999999999999999999999999888765
No 9
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=84.97 E-value=13 Score=29.52 Aligned_cols=117 Identities=11% Similarity=0.075 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhcc-CCCC-CceE----EEe-------c-------C
Q 031977 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESA---STALHDLS-LRPQ-GAKM----LVP-------L-------T 69 (150)
Q Consensus 13 ~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~---~e~l~~L~-~~~~-~~ei----lvp-------l-------g 69 (150)
+++++......+..++..+..++..|+..+.++... ++.|..+. .-+. ..-- .|| + +
T Consensus 93 ~~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~~~~ld~~~~~g~~~g~ip~~~~~~~~~~~l~~~~ 172 (357)
T 3rrk_A 93 SLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAALAHGLDESPRLGVIPFLVAKPEELEAVRKALQEAL 172 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTCTTEEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccCCccceeeeeeEEecChhhHHHHHHHHHHhc
Confidence 588898889999999999999999999999999999 77777544 2110 1111 232 1 1
Q ss_pred CceeEe-EEEcCCCeEEEEccC----------------c-eeee-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 70 ASLYVP-GTLDDARKVLVDIGT----------------G-YFVE-----KTMDEGKDYCERKINLLKSNFDQLIEVATKK 126 (150)
Q Consensus 70 ~~~yv~-g~i~~~~~VlV~lG~----------------g-~~vE-----~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~ 126 (150)
.++|+. ..-.....++|=++. . |-+. .+..++..-++.|+..++..++.+...+..+
T Consensus 173 ~~~~~~~~~~~~~~~~~vv~~~~~~~~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~ 252 (357)
T 3rrk_A 173 ADRFVLEAEPLENQLAALVVVKRSELEAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARL 252 (357)
T ss_dssp TTSCEEEEEECSSSEEEEEEEEGGGHHHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCcEEEEEEEEHHHHHHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 111122222222221 1 1111 2677888899999999999999998888888
Q ss_pred HHH
Q 031977 127 KTI 129 (150)
Q Consensus 127 ~~~ 129 (150)
...
T Consensus 253 ~~~ 255 (357)
T 3rrk_A 253 SRE 255 (357)
T ss_dssp HHH
T ss_pred HHH
Confidence 777
No 10
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=84.50 E-value=5.6 Score=25.41 Aligned_cols=51 Identities=12% Similarity=0.238 Sum_probs=41.6
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 031977 95 EKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLA 145 (150)
Q Consensus 95 E~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~ 145 (150)
+.+.++-+.-|+-|+.+.+..++.++..+..-..++..+...++.......
T Consensus 9 ~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 9 DQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677788899999999999999999999999999998888877766543
No 11
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=83.78 E-value=6.8 Score=25.34 Aligned_cols=43 Identities=21% Similarity=0.198 Sum_probs=33.1
Q ss_pred CceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 90 TGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDE 132 (150)
Q Consensus 90 ~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~ 132 (150)
++..||.|.++|++.++|---..+..++++.+.-.++-..+..
T Consensus 51 ~dllveitkdeaiehier~rl~ykreie~l~~~ekeime~ls~ 93 (99)
T 3aei_A 51 SDLLVEITKDEAIEHIERSRLVYKREIEKLKKREKEIMEELSK 93 (99)
T ss_dssp TTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678999999999999998888888888777665555544443
No 12
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=80.43 E-value=10 Score=25.11 Aligned_cols=98 Identities=15% Similarity=0.203 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCcee
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYF 93 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~ 93 (150)
+..+....+.+..++..|...+..+...+..+...+.-++. . +. .=|+- |..+.
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~---~--g~--~CPvC-------------------gs~l~ 58 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK---A--KG--KCPVC-------------------GRELT 58 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---C--SE--ECTTT-------------------CCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---C--CC--CCCCC-------------------CCcCC
Confidence 45556666777777777877777777777777666554422 0 10 01111 22222
Q ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 94 VEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQ 138 (150)
Q Consensus 94 vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~ 138 (150)
- -...+.++.+..++..+...+..+...+..+...+..+...+.
T Consensus 59 ~-~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 59 D-EHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1123456667777777777777777777777777777766665
No 13
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=80.31 E-value=18 Score=29.18 Aligned_cols=56 Identities=18% Similarity=0.085 Sum_probs=28.8
Q ss_pred EEccCceeeecCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 86 VDIGTGYFVEKTMDEGKDYCERKINLLKSNF---DQLIEVATKKKTISDEAAVILQAKLK 142 (150)
Q Consensus 86 V~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~---~~l~~~l~~~~~~~~~v~~~i~~~~~ 142 (150)
+.++.|.+++.-..+.. -+.++++.+++.+ ..+...+..+...++.+...|.....
T Consensus 213 ~~i~Ggi~a~~a~k~~~-~~~~ei~~l~~~i~~~~~l~~~l~~~~~~~~~l~~~I~~Ai~ 271 (346)
T 2nrj_A 213 LPIIGGIIVGVARDNLG-KLEPLLAELRQTVDYKVTLNRVVGVAYSNINEMHKALDDAIN 271 (346)
T ss_dssp EEETTTEEEEEEGGGHH-HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667665443333 2445555554443 33444555556666666665555443
No 14
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=79.33 E-value=7.1 Score=24.33 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=41.5
Q ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031977 93 FVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQ 143 (150)
Q Consensus 93 ~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~ 143 (150)
.+.++..+|..++..+++.+......-...+...+.++..+...|+..-.+
T Consensus 21 ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~e 71 (77)
T 3trt_A 21 VAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTME 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999998888888888888888877777665443
No 15
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=76.94 E-value=9.3 Score=25.94 Aligned_cols=40 Identities=0% Similarity=0.052 Sum_probs=36.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 96 KTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAV 135 (150)
Q Consensus 96 ~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~ 135 (150)
-++.+|..-++.++..+...+..+..++..++.++.++..
T Consensus 65 nnVGdAl~ald~svt~i~~~I~~lt~~i~~~~~~i~~~~~ 104 (106)
T 2yny_A 65 NNVGSALSALNTSMKQIEDKIEEILSKIYHIENEIARIKK 104 (106)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999999988754
No 16
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=76.16 E-value=10 Score=23.12 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTAT 42 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~ 42 (150)
++||..+...+.+|+..++..+..|+..-
T Consensus 29 iQQLmkVN~~ls~Elr~mQ~~lq~LQsen 57 (63)
T 2w6a_A 29 VQQLMKVNSSLSDELRKLQREIHKLQAEN 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhhHHHHHHHHHHHHHHhhh
Confidence 45555566666666666665555555443
No 17
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=74.12 E-value=10 Score=21.84 Aligned_cols=40 Identities=23% Similarity=0.279 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 105 CERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQL 144 (150)
Q Consensus 105 l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~ 144 (150)
++.|++.++..++.++..++.+-.+++.....|.+++..+
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~l 42 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQL 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999988888887654
No 18
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=72.22 E-value=12 Score=24.84 Aligned_cols=96 Identities=17% Similarity=0.123 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCcee
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYF 93 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~ 93 (150)
..+|..-.+.+..++..+..++..+..+..++...-+--..+.. -| .++|...-. -
T Consensus 15 ~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~--iG-~vfv~~~~~---------------------e 70 (117)
T 2zqm_A 15 LESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKT--VG-TLIVKTTKD---------------------K 70 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEE--ET-TEEEEECHH---------------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHH--hh-HHHhhccHH---------------------H
Confidence 44566666666777777888888888777777654432112222 12 556654421 1
Q ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 94 VEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEA 133 (150)
Q Consensus 94 vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v 133 (150)
+...+++-+++++.+++.+++.++.+...+.+++..+...
T Consensus 71 a~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 71 AVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346777888888888888888888888888888777654
No 19
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=71.68 E-value=18 Score=25.22 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 97 TMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQA 139 (150)
Q Consensus 97 ~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~ 139 (150)
++++..+++..+++.+++.+..++..+..+...+..+...+..
T Consensus 78 ~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 120 (142)
T 3gp4_A 78 TLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIP 120 (142)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777777777777777777777776665543
No 20
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=70.33 E-value=14 Score=21.69 Aligned_cols=40 Identities=20% Similarity=0.101 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 102 KDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKL 141 (150)
Q Consensus 102 ~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~ 141 (150)
.+|-+|....|++.++.+...+..-+.....+.+.+.+.+
T Consensus 7 aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl 46 (52)
T 2z5i_A 7 NYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDHAL 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3688899999999999999999988888988888887754
No 21
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=69.89 E-value=18 Score=22.81 Aligned_cols=42 Identities=10% Similarity=0.129 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (150)
Q Consensus 13 ~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~ 54 (150)
++++|....+.-.+++......|..|...+.+.+.-+.-|..
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378898888888888888888888888888777766665543
No 22
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=69.75 E-value=22 Score=24.89 Aligned_cols=10 Identities=10% Similarity=0.368 Sum_probs=5.0
Q ss_pred CHHHHHHHHH
Q 031977 97 TMDEGKDYCE 106 (150)
Q Consensus 97 ~~~eA~~~l~ 106 (150)
|+++..+++.
T Consensus 75 sL~eIk~~l~ 84 (148)
T 3gpv_A 75 PIQKIKQFID 84 (148)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 4455555544
No 23
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=68.03 E-value=10 Score=26.63 Aligned_cols=44 Identities=5% Similarity=-0.105 Sum_probs=31.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 96 KTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQA 139 (150)
Q Consensus 96 ~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~ 139 (150)
.++++..+++..++..+++++..++..+..+...+..+...+..
T Consensus 91 ~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 134 (148)
T 3gpv_A 91 STILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 134 (148)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46778888888888888888888888888888887777766554
No 24
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=67.37 E-value=15 Score=23.87 Aligned_cols=95 Identities=11% Similarity=0.185 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCcee
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYF 93 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~ 93 (150)
..+|..-.+.+..+++.+..++..+..+..++..+-+--..+.. -| .++|...-.-
T Consensus 10 f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~--iG-~vfv~~~~~e--------------------- 65 (107)
T 1fxk_A 10 FQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKS--SG-NILIRVAKDE--------------------- 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEE--ET-TEEEEECHHH---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHH--Hh-HHHHhccHHH---------------------
Confidence 34566667777788888989999999888888765432112221 12 5666654321
Q ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 94 VEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDE 132 (150)
Q Consensus 94 vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~ 132 (150)
+...+++-+++++.+++.++++++.+...+.+++..+..
T Consensus 66 ~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 66 LTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688899999999999999999999999999887753
No 25
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=66.93 E-value=21 Score=22.57 Aligned_cols=40 Identities=18% Similarity=0.202 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 105 CERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQL 144 (150)
Q Consensus 105 l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~ 144 (150)
++.|+..|+..++.++..++.+-.+++.....|.+++..+
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~L 44 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKV 44 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888888888888888887777776543
No 26
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=66.85 E-value=28 Score=24.22 Aligned_cols=43 Identities=16% Similarity=0.147 Sum_probs=30.3
Q ss_pred cCHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 96 KTMDEGKDYCE----------RKINLLKSNFDQLIEVATKKKTISDEAAVILQ 138 (150)
Q Consensus 96 ~~~~eA~~~l~----------rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~ 138 (150)
+|+++..+++. .+...+.+.++.+...+.+++.....+...+.
T Consensus 60 ~sL~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~ 112 (142)
T 3gp4_A 60 LSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKID 112 (142)
T ss_dssp CCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888875 45567777777777777777776666665554
No 27
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=65.62 E-value=23 Score=22.51 Aligned_cols=30 Identities=10% Similarity=0.245 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKKK 127 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~ 127 (150)
.++..+++..++..++.++..++.....+.
T Consensus 37 ~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~ 66 (99)
T 1q08_A 37 CQESKGIVQERLQEVEARIAELQSMQRSLQ 66 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333333
No 28
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=65.46 E-value=8.6 Score=20.04 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 111 LLKSNFDQLIEVATKKKTISDEAAVILQA 139 (150)
Q Consensus 111 ~l~~~~~~l~~~l~~~~~~~~~v~~~i~~ 139 (150)
.|++.+.+++...++++..+..+++..+.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46677777888888888888888776654
No 29
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=65.28 E-value=26 Score=27.24 Aligned_cols=69 Identities=19% Similarity=0.162 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEE-ccCceee
Q 031977 16 QLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVD-IGTGYFV 94 (150)
Q Consensus 16 qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~-lG~g~~v 94 (150)
+|.....++.+..+.|...+ +....++...++-|+.|.. .|++-|.|+.. .+.++++|. =|-.|+|
T Consensus 58 eL~~ql~~L~arNe~L~~~L---k~ar~El~~LkeElerL~s--------PPL~iGtvlev--~dd~~aiV~s~Gr~~~V 124 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETL---KEARQQLLALREEVDRLGQ--------PPSGYGVLLAT--HDDDTVDVFTSGRKMRL 124 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHH---HHHHHHHHHHHHHHHHHHS--------CCEEEEEEEEE--CSSSCEEEECSSSCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcC--------CCceEEEEEEE--cCCCEEEEEeCCceEEE
Confidence 33333344444344444433 3444444445555555542 56666666653 244554554 4445666
Q ss_pred ecC
Q 031977 95 EKT 97 (150)
Q Consensus 95 E~~ 97 (150)
..+
T Consensus 125 ~Vs 127 (251)
T 3m9b_A 125 TCS 127 (251)
T ss_dssp CBC
T ss_pred EeC
Confidence 554
No 30
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=64.85 E-value=28 Score=23.14 Aligned_cols=46 Identities=20% Similarity=0.159 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCcee
Q 031977 28 VNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLY 73 (150)
Q Consensus 28 ~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~y 73 (150)
++.|..+++.+......--..--++..|+.........|-.|-|.|
T Consensus 18 ~~~l~~~i~~~~~~~~~g~A~a~A~a~lp~~~~~gk~~v~~g~G~y 63 (105)
T 2lme_A 18 FRQLDNRLDKLDTRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGY 63 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCSEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEEecc
Confidence 3445555666666666666666777778643333456666666555
No 31
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=63.72 E-value=17 Score=21.36 Aligned_cols=39 Identities=8% Similarity=0.049 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 100 EGKDYCERKINLL---KSNFDQLIEVATKKKTISDEAAVILQ 138 (150)
Q Consensus 100 eA~~~l~rr~~~l---~~~~~~l~~~l~~~~~~~~~v~~~i~ 138 (150)
+|.+|+.+.+-.- ....+.+..+..+++..+..+...++
T Consensus 2 ~AlefIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~ 43 (53)
T 2yy0_A 2 SALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENK 43 (53)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555554311 13344444444444444444444443
No 32
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=62.63 E-value=25 Score=23.42 Aligned_cols=38 Identities=21% Similarity=0.207 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 031977 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLS 56 (150)
Q Consensus 15 ~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~ 56 (150)
++|....++.+ ..+..+..|+..+..+.+|..+|+.|.
T Consensus 48 ~~Ll~~i~~~e----e~R~~yE~LQDkL~qi~eAR~ALdaLR 85 (98)
T 3f1i_H 48 PQLLELLNQLD----ERRLYYEGLQDKLAQIRDARGALSALR 85 (98)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544 366777888888888888888888774
No 33
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=61.45 E-value=20 Score=20.22 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 104 YCERKINLLKSNFDQLIEVATKKKTISDEAAVIL 137 (150)
Q Consensus 104 ~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i 137 (150)
-|+.|.+.++....++++.+..+..+-.++++++
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 3667788888888888888888888888777765
No 34
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=60.77 E-value=18 Score=29.83 Aligned_cols=55 Identities=13% Similarity=0.243 Sum_probs=47.6
Q ss_pred CceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 90 TGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQL 144 (150)
Q Consensus 90 ~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~ 144 (150)
+|+=+-.+++++..-|..||+.|+..++.+++.-......++.+.+.+..++.+.
T Consensus 50 sGCrLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~ 104 (390)
T 1deq_A 50 SGCRMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKA 104 (390)
T ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Confidence 4777888899999999999999999999999998888888888888888777654
No 35
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=59.66 E-value=30 Score=21.98 Aligned_cols=42 Identities=0% Similarity=0.071 Sum_probs=27.5
Q ss_pred cCHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 96 KTMDEGKDYCER-----------KINLLKSNFDQLIEVATKKKTISDEAAVIL 137 (150)
Q Consensus 96 ~~~~eA~~~l~r-----------r~~~l~~~~~~l~~~l~~~~~~~~~v~~~i 137 (150)
||+++-++|++- ....++..+..+...+.+++.....+...+
T Consensus 17 fsL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~ 69 (99)
T 1q08_A 17 FSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLN 69 (99)
T ss_dssp CCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888763 456666666666666666666665555544
No 36
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=58.90 E-value=24 Score=30.42 Aligned_cols=52 Identities=10% Similarity=0.076 Sum_probs=41.8
Q ss_pred ceeeecC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 91 GYFVEKT--MDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLK 142 (150)
Q Consensus 91 g~~vE~~--~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~ 142 (150)
+.|-|++ ++.=+.+|+++++.--.++..|+..|.+....|..++-.|..++.
T Consensus 106 NtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqir 159 (562)
T 3ghg_A 106 NTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIR 159 (562)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566676 777888888888887788888888888888888888888887775
No 37
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=58.01 E-value=42 Score=22.94 Aligned_cols=42 Identities=5% Similarity=0.067 Sum_probs=23.4
Q ss_pred cCHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 96 KTMDEGKDYCER----------KINLLKSNFDQLIEVATKKKTISDEAAVIL 137 (150)
Q Consensus 96 ~~~~eA~~~l~r----------r~~~l~~~~~~l~~~l~~~~~~~~~v~~~i 137 (150)
+|+++..+++.. ....+...+..+...+.+++.....+...+
T Consensus 58 ~sl~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (135)
T 1q06_A 58 FNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMRDQLLALA 109 (135)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777642 344555555555555555555555544433
No 38
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=57.42 E-value=36 Score=22.22 Aligned_cols=42 Identities=17% Similarity=0.198 Sum_probs=25.2
Q ss_pred cCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 96 KTMDEGKDYCER----KINLLKSNFDQLIEVATKKKTISDEAAVIL 137 (150)
Q Consensus 96 ~~~~eA~~~l~r----r~~~l~~~~~~l~~~l~~~~~~~~~v~~~i 137 (150)
+|.++...+++. ....++.+++.+.+.+..++..+..+...+
T Consensus 60 ~~l~~I~~~l~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 105 (109)
T 1r8d_A 60 FRLDEIKEMLDHPNFDRKAALQSQKEILMKKKQRMDEMIQTIDRTL 105 (109)
T ss_dssp CCHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777742 345666666666666666666555555443
No 39
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=55.24 E-value=89 Score=25.86 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031977 21 KEQTDLEVNLLQDSLNNIRTATSRLESASTALHDL 55 (150)
Q Consensus 21 ~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L 55 (150)
..-+...++.|...+..+.....+....+.+|...
T Consensus 33 e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 33 RLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33366666667666666666666666666666554
No 40
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=54.85 E-value=38 Score=25.93 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=44.5
Q ss_pred eEEEEccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031977 83 KVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQ 143 (150)
Q Consensus 83 ~VlV~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~ 143 (150)
|-+.++... |..-+-+.-+.|+..|.+.+++.+..++..+.+.+.+.+.....|.+-.++
T Consensus 148 K~l~hLSL~-f~~asde~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~ 207 (228)
T 3q0x_A 148 KQLPHITLA-FRPGNDSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQ 207 (228)
T ss_dssp EEEEEEEEE-EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEE-eecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555443 455677788889999999999888888888888888888777777655443
No 41
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=53.19 E-value=22 Score=20.14 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 031977 104 YCERKINLLKSNFDQLIE 121 (150)
Q Consensus 104 ~l~rr~~~l~~~~~~l~~ 121 (150)
-+++|+..|+.+++.+..
T Consensus 20 ~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 20 DFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 42
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=51.95 E-value=53 Score=24.40 Aligned_cols=49 Identities=20% Similarity=0.189 Sum_probs=40.0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 96 KTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQL 144 (150)
Q Consensus 96 ~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~ 144 (150)
-|.++.+.|.+.+...+...+..++..+.+.......++..|+.-+.+.
T Consensus 6 ~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~ 54 (189)
T 2v71_A 6 SSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQA 54 (189)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999998888888888888888888888888888877666543
No 43
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=51.69 E-value=43 Score=26.29 Aligned_cols=44 Identities=11% Similarity=0.202 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 97 TMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAK 140 (150)
Q Consensus 97 ~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~ 140 (150)
++.+|..|-+.|...+...++.+.+++.++.+.++.+.+.|...
T Consensus 206 s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~ 249 (268)
T 2yo3_A 206 SVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHI 249 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999998888777543
No 44
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=50.70 E-value=30 Score=22.61 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=22.1
Q ss_pred cCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 96 KTMDEGKDYCER----KINLLKSNFDQLIEVATKKKTISDEAAVI 136 (150)
Q Consensus 96 ~~~~eA~~~l~r----r~~~l~~~~~~l~~~l~~~~~~~~~v~~~ 136 (150)
+|+++..+++.. ....+..+++.+...+.+++..+..+...
T Consensus 59 ~sl~~I~~~l~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 103 (108)
T 2vz4_A 59 FPLDEVAALLDDPAADPRAHLRRQHELLSARIGKLQKMAAAVEQA 103 (108)
T ss_dssp CCHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666642 33455555555555555555555554443
No 45
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=50.34 E-value=67 Score=23.02 Aligned_cols=42 Identities=14% Similarity=0.208 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031977 102 KDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQ 143 (150)
Q Consensus 102 ~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~ 143 (150)
.+|..|++..|++.++.+...+..-+..+..+...|.+.+..
T Consensus 93 AE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~e 134 (155)
T 2efr_A 93 AEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDK 134 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777888888888888888788888787777766543
No 46
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=49.47 E-value=33 Score=19.27 Aligned_cols=29 Identities=7% Similarity=0.115 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 107 RKINLLKSNFDQLIEVATKKKTISDEAAV 135 (150)
Q Consensus 107 rr~~~l~~~~~~l~~~l~~~~~~~~~v~~ 135 (150)
.+++.+...+.+..+.|.+++..+..++.
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666665555544
No 47
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=49.45 E-value=75 Score=23.31 Aligned_cols=78 Identities=15% Similarity=0.166 Sum_probs=52.9
Q ss_pred eEEEecCC---ceeEeEEEcCCCeEEEEccCceeeecC--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 63 KMLVPLTA---SLYVPGTLDDARKVLVDIGTGYFVEKT--MD---EGKDYCERKINLLKSNFDQLIEVATKKKTISDEAA 134 (150)
Q Consensus 63 eilvplg~---~~yv~g~i~~~~~VlV~lG~g~~vE~~--~~---eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~ 134 (150)
.-.+.++. -...+-.++ .|-..+|+=-+-+-+ .+ +-+.|..+.+..+++.++.++..+...+.....+.
T Consensus 86 ~~~f~~s~e~~~~syek~lk---~vsfrLGs~~Lk~a~~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~ 162 (175)
T 3mud_A 86 VYTFNFSKESCYFFFEKNLK---DVSFRLGSFNLEKVENPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMH 162 (175)
T ss_dssp CEEEEECTTTCEEEEEEECS---SCEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEecChhHHHHHHHHHHH---HHHHHhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443 233344443 355666654333333 22 33568999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 031977 135 VILQAKLKQ 143 (150)
Q Consensus 135 ~~i~~~~~~ 143 (150)
..|.+.+..
T Consensus 163 ~eLDqTl~e 171 (175)
T 3mud_A 163 QMLDQTLLE 171 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988877654
No 48
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=49.31 E-value=49 Score=21.09 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 20 IKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (150)
Q Consensus 20 ~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~ 54 (150)
++..+.+.+...+..+++|+....++.....-|+.
T Consensus 12 LRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~ 46 (78)
T 3iv1_A 12 LRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEE 46 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHH
Confidence 45556666677777777777777777766555544
No 49
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=48.53 E-value=28 Score=18.08 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 24 TDLEVNLLQDSLNNIRTATSRLESA 48 (150)
Q Consensus 24 l~~e~~~l~~~~~~L~~~~~e~~~~ 48 (150)
|++++..|+.-.+.|+....++++.
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666555555555555443
No 50
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=47.82 E-value=42 Score=22.38 Aligned_cols=7 Identities=29% Similarity=0.501 Sum_probs=3.0
Q ss_pred CCeEEEE
Q 031977 81 ARKVLVD 87 (150)
Q Consensus 81 ~~~VlV~ 87 (150)
.++++|.
T Consensus 49 ~~~~iVk 55 (109)
T 2wg5_A 49 DGRVVVK 55 (109)
T ss_dssp TSCEEEE
T ss_pred CCEEEEE
Confidence 3344444
No 51
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=47.16 E-value=61 Score=24.25 Aligned_cols=43 Identities=9% Similarity=0.102 Sum_probs=23.0
Q ss_pred cCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 96 KTMDEGKDYCE----RKINLLKSNFDQLIEVATKKKTISDEAAVILQ 138 (150)
Q Consensus 96 ~~~~eA~~~l~----rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~ 138 (150)
+|+++.+++++ .....++..+..+.+++..++..+..+...+.
T Consensus 64 ~~l~~i~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (278)
T 1r8e_A 64 TPLEEMKKAQDLEMEELFAFYTEQERQIREKLDFLSALEQTISLVKK 110 (278)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666553 23445555555555555555555555555443
No 52
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=46.31 E-value=50 Score=20.35 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSR 44 (150)
Q Consensus 11 ~l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e 44 (150)
.+++++|...-.++......++..+..|...+..
T Consensus 8 ~v~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~ 41 (93)
T 4ioe_A 8 KITPEELERIAGNFKNAAGEAQSQINRLEGDINS 41 (93)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999888888887777776666666554433
No 53
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=45.83 E-value=46 Score=19.79 Aligned_cols=53 Identities=9% Similarity=0.166 Sum_probs=43.6
Q ss_pred ceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031977 91 GYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQ 143 (150)
Q Consensus 91 g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~ 143 (150)
|+.=|+|+-++.=-+...+.+|......+.+.+.+=+.....++..+++-+.+
T Consensus 1 ~~veEKSlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k~ 53 (56)
T 2w6b_A 1 GPLGSKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKN 53 (56)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44568888899999999999999999999999999999999999888876654
No 54
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=45.29 E-value=54 Score=20.48 Aligned_cols=87 Identities=10% Similarity=0.159 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccC
Q 031977 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGT 90 (150)
Q Consensus 11 ~l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~ 90 (150)
.+++++|...-.++......++..+..|...+..+.. ... +. ...
T Consensus 7 ~V~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~------~W~-G~-a~~--------------------------- 51 (98)
T 3gwk_C 7 KLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDE------NWD-GS-TFD--------------------------- 51 (98)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HBC-SS-TTH---------------------------
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------ccC-cH-HHH---------------------------
Confidence 4678899888888888777777777776666555432 222 11 111
Q ss_pred ceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 91 GYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQ 138 (150)
Q Consensus 91 g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~ 138 (150)
.+.+.-.-+......+...++.+...|......+......+.
T Consensus 52 ------aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~D~~~A 93 (98)
T 3gwk_C 52 ------SFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADIA 93 (98)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233344445556666666666666666666666665555443
No 55
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=44.58 E-value=52 Score=21.71 Aligned_cols=31 Identities=16% Similarity=0.340 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTA 41 (150)
Q Consensus 11 ~l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~ 41 (150)
..+|++|..+.++|++=.+.|++....|...
T Consensus 5 ~~dpeElr~Fa~~L~~F~d~Lq~~~~~L~~~ 35 (94)
T 3fx7_A 5 QMDTEEVREFVGHLERFKELLREEVNSLSNH 35 (94)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568898888888887666665555544443
No 56
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=44.45 E-value=54 Score=20.28 Aligned_cols=87 Identities=10% Similarity=0.192 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccC
Q 031977 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGT 90 (150)
Q Consensus 11 ~l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~ 90 (150)
.+++++|...-.++......++..+..|...+..+.. ... |.-
T Consensus 8 ~v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~------~W~----G~a--------------------------- 50 (99)
T 3zbh_A 8 RLTPEELRGVARQYNVESSNVTELIARLDQMSHTLQG------IWE----GAS--------------------------- 50 (99)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HCC----SHH---------------------------
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hcc----ChH---------------------------
Confidence 3678899988888888777777777777666655432 122 200
Q ss_pred ceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 91 GYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQ 138 (150)
Q Consensus 91 g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~ 138 (150)
--.+.+.-.-+......+...++.+...|......+......+.
T Consensus 51 ----~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~d~~~a 94 (99)
T 3zbh_A 51 ----SEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQQIA 94 (99)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01234444445566666666666666666666666665555443
No 57
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=44.12 E-value=1.4e+02 Score=27.75 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031977 23 QTDLEVNLLQDSLNNIRTATSRLESASTALHDL 55 (150)
Q Consensus 23 ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L 55 (150)
.+.+|++.|+..+..++....+...+...+..|
T Consensus 957 ~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L 989 (1080)
T 2dfs_A 957 TYSTETEKLRSDVERLRMSEEEAKNATNRVLSL 989 (1080)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445444444444444444443333333
No 58
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=43.49 E-value=25 Score=20.63 Aligned_cols=17 Identities=12% Similarity=0.272 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031977 29 NLLQDSLNNIRTATSRL 45 (150)
Q Consensus 29 ~~l~~~~~~L~~~~~e~ 45 (150)
+.|+..+..|.....++
T Consensus 29 ~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 29 AEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 59
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=42.28 E-value=69 Score=21.81 Aligned_cols=37 Identities=8% Similarity=0.155 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 97 TMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEA 133 (150)
Q Consensus 97 ~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v 133 (150)
+.++..+++..++..+++++..++.....+...+...
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~ 112 (135)
T 1q06_A 76 HSADVKRRTLEKVAEIERHIEELQSMRDQLLALANAC 112 (135)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678889999999999999999988888887766543
No 60
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=42.05 E-value=29 Score=25.60 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=23.1
Q ss_pred eeEeEEEc--CCCeEEEEcc-CceeeecCHHH
Q 031977 72 LYVPGTLD--DARKVLVDIG-TGYFVEKTMDE 100 (150)
Q Consensus 72 ~yv~g~i~--~~~~VlV~lG-~g~~vE~~~~e 100 (150)
.|++|+|. .++.|+|++| -||.|-.|..-
T Consensus 3 ~~l~G~l~~~~~~~~vidv~GvGY~v~~~~~t 34 (191)
T 1ixr_A 3 RYLRGLVLKKEAGGFVLLAGGVGFFLQAPTPF 34 (191)
T ss_dssp CEEEEEEEEECSSEEEEECSSEEEEEECCHHH
T ss_pred ceEEEEEEEEeCCEEEEEECCEEEEEEcCHHH
Confidence 48889886 5788999987 59999888654
No 61
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=41.79 E-value=56 Score=28.17 Aligned_cols=45 Identities=11% Similarity=0.071 Sum_probs=31.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 96 KTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAK 140 (150)
Q Consensus 96 ~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~ 140 (150)
-.+.+--+-|+|++..|+..++..-..|+.|+..+..+...|++.
T Consensus 106 NtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 106 NTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444456778888888877777777777777777777777654
No 62
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=41.48 E-value=61 Score=20.00 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=26.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 96 KTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAK 140 (150)
Q Consensus 96 ~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~ 140 (150)
-.+-+++.-=+-++..|+..++.-...+.+++.++..+.+++...
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~~~ 58 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLPVP 58 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 334445555566777777777777778888888887777777643
No 63
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=40.28 E-value=67 Score=20.10 Aligned_cols=39 Identities=10% Similarity=0.120 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031977 105 CERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQ 143 (150)
Q Consensus 105 l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~ 143 (150)
++.++..++..++.-+..-...+.++..+.+.+..|+..
T Consensus 19 Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~e 57 (72)
T 3cve_A 19 LEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFE 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 566777777777777777777778888888888777754
No 64
>2gr7_A Adhesin; trimeric autotransporter, adhesion, membrane protein, protei secretion, microbial pathogenesis; HET: C8E; 2.30A {Haemophilus influenzae} SCOP: d.24.1.4
Probab=39.16 E-value=93 Score=21.46 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeE--------eEEEcCCCeEEEEcc
Q 031977 23 QTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYV--------PGTLDDARKVLVDIG 89 (150)
Q Consensus 23 ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv--------~g~i~~~~~VlV~lG 89 (150)
+++..+..|+.+++.++.....=-.+--++..|+.....-..+|-+|.|.|= -..+.+..++++.+|
T Consensus 36 ~~~~~in~L~~~I~~~~k~a~aGiA~A~A~A~LPq~~~pGk~~v~~g~G~Y~GqsAvAvG~s~~s~ngk~~~k~s 110 (129)
T 2gr7_A 36 NLAGQVNNLEGKVNKVGKRADAGTASALAASQLPQATMPGKSMVAIAGSSYQGQNGLAIGVSRISDNGKVIIRLS 110 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSTTCEEEEEEEEEETTEEEEEEEEEEECTTSCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCEEEEEEEEecCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 3455666677777777666666667777888887432223456777766651 124455556666554
No 65
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=39.00 E-value=74 Score=20.24 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031977 105 CERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQ 143 (150)
Q Consensus 105 l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~ 143 (150)
++.++..++..++.-+..-...+.++..+.+.+..|+..
T Consensus 25 Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~e 63 (79)
T 3cvf_A 25 LEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFE 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 566666666666666666666677777777777777654
No 66
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=38.61 E-value=30 Score=25.77 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=21.5
Q ss_pred eeEeEEEc--CCCeEEEEcc-CceeeecCHH
Q 031977 72 LYVPGTLD--DARKVLVDIG-TGYFVEKTMD 99 (150)
Q Consensus 72 ~yv~g~i~--~~~~VlV~lG-~g~~vE~~~~ 99 (150)
.|++|+|. .++.|+|++| -||.|-.|..
T Consensus 3 ~~l~G~l~~~~~~~vvidv~GVGY~v~~~~~ 33 (203)
T 1cuk_A 3 GRLRGIIIEKQPPLVLIEVGGVGYEVHMPMT 33 (203)
T ss_dssp CEEEEEEEEEETTEEEEEETTEEEEEECCHH
T ss_pred ceEEEEEEEEeCCEEEEEECCEEEEEEcCHH
Confidence 47888886 4788999976 4888887754
No 67
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=38.30 E-value=60 Score=18.98 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=19.4
Q ss_pred CCCCCHHHHHHHHHHHH----HHHHHHHHHHHH
Q 031977 9 MEKMSVEQLKAIKEQTD----LEVNLLQDSLNN 37 (150)
Q Consensus 9 l~~l~~~qL~~~~~ql~----~e~~~l~~~~~~ 37 (150)
|..+|.++|.+....|+ +|++.+..++..
T Consensus 7 Lk~ls~eEL~~rl~~Ld~~Me~Ei~elr~RY~~ 39 (51)
T 2jo8_A 7 LKSWTVEDLQKRLLALDPMMEQEIEEIRQKYQS 39 (51)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 45689999988877775 455555555444
No 68
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=37.95 E-value=70 Score=19.65 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRL 45 (150)
Q Consensus 11 ~l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~ 45 (150)
.+++++|...-..+......++..+..|...+..+
T Consensus 5 ~v~~~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L 39 (97)
T 2vs0_A 5 KMSPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEI 39 (97)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888877777777666666665554
No 69
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=37.94 E-value=59 Score=18.83 Aligned_cols=42 Identities=17% Similarity=0.091 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 97 TMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQ 138 (150)
Q Consensus 97 ~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~ 138 (150)
|+.++..-+.+++...+.........+...+..++.+..-+.
T Consensus 2 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~ 43 (60)
T 3htk_A 2 PFANTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLN 43 (60)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666655655555555555555555444443
No 70
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=37.41 E-value=1e+02 Score=21.33 Aligned_cols=30 Identities=7% Similarity=0.020 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 99 DEGKDYCERKINLLKSNFDQLIEVATKKKT 128 (150)
Q Consensus 99 ~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~ 128 (150)
++..+.+.++.+.+.+.+..++..+..+..
T Consensus 79 ~~~~~~L~~q~~~L~~~i~~l~~~l~~l~~ 108 (146)
T 3hh0_A 79 EVFLRQMHFQREVLLAEQERIAKVLSHMDE 108 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333333
No 71
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=36.65 E-value=43 Score=17.02 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031977 15 EQLKAIKEQTDLEVNLLQDSLN 36 (150)
Q Consensus 15 ~qL~~~~~ql~~e~~~l~~~~~ 36 (150)
+||+++...++.+-..|.....
T Consensus 2 dqlnallasleaenkqlkakve 23 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVE 23 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777666655544333
No 72
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=36.06 E-value=1.1e+02 Score=22.66 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVI 136 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~ 136 (150)
.++..+++..++..+++++..++..+..+...+..+...
T Consensus 77 ~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~ 115 (278)
T 1r8e_A 77 MEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQ 115 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567889999999999999999999999998888776644
No 73
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=34.54 E-value=46 Score=21.67 Aligned_cols=31 Identities=10% Similarity=0.079 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 100 EGKDYCERKINLLKSNFDQLIEVATKKKTIS 130 (150)
Q Consensus 100 eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~ 130 (150)
+..+.+.++++.+++.+..++..+..+...+
T Consensus 75 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 105 (109)
T 1r8d_A 75 DRKAALQSQKEILMKKKQRMDEMIQTIDRTL 105 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888877777766554
No 74
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=33.96 E-value=70 Score=22.38 Aligned_cols=24 Identities=17% Similarity=0.052 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 111 LLKSNFDQLIEVATKKKTISDEAA 134 (150)
Q Consensus 111 ~l~~~~~~l~~~l~~~~~~~~~v~ 134 (150)
.+...++.+..++..++.....+.
T Consensus 94 ll~~~~~~l~~qi~~L~~~~~~L~ 117 (154)
T 2zhg_A 94 LSSQWREELDRRIHTLVALRDELD 117 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 75
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=33.95 E-value=1.2e+02 Score=22.97 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=25.4
Q ss_pred cCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 96 KTMDEGKDYCER----KINLLKSNFDQLIEVATKKKTISDEAAVILQ 138 (150)
Q Consensus 96 ~~~~eA~~~l~r----r~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~ 138 (150)
+|+++..++++. +...|..+++.+...+..+...+..+...|.
T Consensus 61 ~sL~eIk~~l~~~~~~~~~~L~~~~~~L~~~~~~L~~~~~~l~~~i~ 107 (249)
T 3qao_A 61 FPLKKIQQILDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDLTIK 107 (249)
T ss_dssp CCHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666653 4455666666666666666665555555544
No 76
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=33.84 E-value=97 Score=20.09 Aligned_cols=38 Identities=8% Similarity=0.049 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 101 GKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQ 138 (150)
Q Consensus 101 A~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~ 138 (150)
..+.+..++..+...+..+......+..++..+...+.
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~ 41 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIE 41 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666666666655554
No 77
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=33.62 E-value=1.1e+02 Score=21.15 Aligned_cols=43 Identities=5% Similarity=0.013 Sum_probs=29.0
Q ss_pred cCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 96 KTMDEGKDYCE-------RKINLLKSNFDQLIEVATKKKTISDEAAVILQ 138 (150)
Q Consensus 96 ~~~~eA~~~l~-------rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~ 138 (150)
+|+++...++. .+...+..+.+.+...+..+...+..+...+.
T Consensus 62 ~sl~~I~~~l~~~~~~~~~~~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~ 111 (146)
T 3hh0_A 62 FSLGEIQNIILQRDIETEVFLRQMHFQREVLLAEQERIAKVLSHMDEMTK 111 (146)
T ss_dssp CCHHHHHHHHTSSEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888774 45566777777777777777766666655544
No 78
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=33.43 E-value=90 Score=19.59 Aligned_cols=42 Identities=7% Similarity=0.086 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQA 139 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~ 139 (150)
++.-..|.++-++.|+..+-.-+..|..++.++..+.+.+..
T Consensus 19 LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 19 LETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777888888888888888888888888777766654
No 79
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=32.82 E-value=1.6e+02 Score=23.79 Aligned_cols=31 Identities=10% Similarity=0.138 Sum_probs=26.4
Q ss_pred eeeecCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 92 YFVEKTMDEGKDYCERKINLLKSNFDQLIEV 122 (150)
Q Consensus 92 ~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~ 122 (150)
+.++.++++..+.++.+++.+++.++++...
T Consensus 239 ~lA~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (426)
T 1lrz_A 239 PLAYINFDEYIKELNEERDILNKDLNKALKD 269 (426)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999998543
No 80
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=32.51 E-value=94 Score=19.54 Aligned_cols=41 Identities=12% Similarity=0.093 Sum_probs=27.2
Q ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 93 FVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEA 133 (150)
Q Consensus 93 ~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v 133 (150)
..|.++.++..-+...+..++..+..+...+..++..+...
T Consensus 12 sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q 52 (84)
T 1gk4_A 12 SLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARH 52 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777777777777777777666655433
No 81
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.19 E-value=55 Score=19.97 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=20.8
Q ss_pred CCCceEEEecCCceeEeEEEcCCC
Q 031977 59 PQGAKMLVPLTASLYVPGTLDDAR 82 (150)
Q Consensus 59 ~~~~eilvplg~~~yv~g~i~~~~ 82 (150)
.++.++|.-=+.|.|.+|+|...+
T Consensus 9 ~eGqdVLarWsDGlfYlgtV~kV~ 32 (63)
T 2e5q_A 9 TEGQYVLCRWTDGLYYLGKIKRVS 32 (63)
T ss_dssp CTTCEEEEECTTSCEEEEEECCCC
T ss_pred ecCCEEEEEecCCCEEEEEEEEEe
Confidence 357899999999999999998654
No 82
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=32.15 E-value=82 Score=20.31 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 18 KAIKEQTDLEVNLLQDSLNNIRTATSRL 45 (150)
Q Consensus 18 ~~~~~ql~~e~~~l~~~~~~L~~~~~e~ 45 (150)
..-...|+.+-..|..++..|...+..+
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~~L 69 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELSTL 69 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555444433
No 83
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=32.14 E-value=78 Score=18.51 Aligned_cols=34 Identities=6% Similarity=0.206 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLE 46 (150)
Q Consensus 13 ~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~ 46 (150)
+..+.-.+.+++..+++.|......|+..+.++.
T Consensus 21 ~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 21 DEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777776666666655443
No 84
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=31.73 E-value=29 Score=20.93 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=24.6
Q ss_pred CCCceEEEecCCceeEeEEEcC----CCeEEEEccCc
Q 031977 59 PQGAKMLVPLTASLYVPGTLDD----ARKVLVDIGTG 91 (150)
Q Consensus 59 ~~~~eilvplg~~~yv~g~i~~----~~~VlV~lG~g 91 (150)
..|.++|+--+.|.|.+|+|.. ...-+|--+.|
T Consensus 5 ~~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~ 41 (58)
T 4hcz_A 5 WEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDD 41 (58)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTS
T ss_pred ccCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcCC
Confidence 3578999999999999999975 22555655443
No 85
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=31.37 E-value=44 Score=16.77 Aligned_cols=13 Identities=38% Similarity=0.424 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHH
Q 031977 99 DEGKDYCERKINL 111 (150)
Q Consensus 99 ~eA~~~l~rr~~~ 111 (150)
=+|.+|++||-..
T Consensus 9 LeAAeyLErrEre 21 (26)
T 1pd7_B 9 LEAADYLERRERE 21 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4788999988763
No 86
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=31.07 E-value=97 Score=19.22 Aligned_cols=36 Identities=11% Similarity=0.156 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVIL 137 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i 137 (150)
+..|++| |..|......+...+..++.+...+...|
T Consensus 42 L~~Ai~Y----I~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 42 LDKATEY----IQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 34566666666666666666665555544
No 87
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=30.86 E-value=82 Score=19.95 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 21 KEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (150)
Q Consensus 21 ~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~ 54 (150)
++.|=..++.|......|+..+.....++..++.
T Consensus 32 k~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ 65 (77)
T 2w83_C 32 KNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEE 65 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555555555555544443
No 88
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=30.75 E-value=1.3e+02 Score=20.62 Aligned_cols=33 Identities=12% Similarity=0.087 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 106 ERKINLLKSNFDQLIEVATKKKTISDEAAVILQ 138 (150)
Q Consensus 106 ~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~ 138 (150)
.++++.|+..+..|...|.+....+..++...+
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 344555555555555555555555555544443
No 89
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=30.12 E-value=1.5e+02 Score=20.99 Aligned_cols=38 Identities=11% Similarity=0.185 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031977 106 ERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQ 143 (150)
Q Consensus 106 ~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~ 143 (150)
.+|+..|++........+.+.-+....+...++..+..
T Consensus 91 ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ 128 (151)
T 1yke_B 91 LRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIED 128 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666666666666666666543
No 90
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=29.80 E-value=67 Score=17.00 Aligned_cols=28 Identities=4% Similarity=0.060 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 109 INLLKSNFDQLIEVATKKKTISDEAAVI 136 (150)
Q Consensus 109 ~~~l~~~~~~l~~~l~~~~~~~~~v~~~ 136 (150)
.+.|+...+++-.....+..++..+...
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4556666666666666666665555443
No 91
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=29.68 E-value=89 Score=18.42 Aligned_cols=25 Identities=8% Similarity=0.048 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 111 LLKSNFDQLIEVATKKKTISDEAAV 135 (150)
Q Consensus 111 ~l~~~~~~l~~~l~~~~~~~~~v~~ 135 (150)
.|+...+.+...-..+...+..+..
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 92
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=29.59 E-value=1.4e+02 Score=22.77 Aligned_cols=57 Identities=7% Similarity=-0.029 Sum_probs=48.9
Q ss_pred EEccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 86 VDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLK 142 (150)
Q Consensus 86 V~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~ 142 (150)
..-|++-.+..-+..-...++.|+..++..+.+.+.+.+..+.++..++..+.+...
T Consensus 157 f~~asde~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~ 213 (228)
T 3q0x_A 157 FRPGNDSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLRE 213 (228)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778888888888889999999999999999999999999999999888766553
No 93
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=29.48 E-value=1.3e+02 Score=20.17 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 10 EKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRL 45 (150)
Q Consensus 10 ~~l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~ 45 (150)
..++..++....++..+++..|...+..|+..+.++
T Consensus 80 ~~~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~ 115 (117)
T 3kin_B 80 LELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNRW 115 (117)
T ss_dssp BCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788888888888888888888888888766654
No 94
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=29.37 E-value=70 Score=17.09 Aligned_cols=23 Identities=9% Similarity=-0.116 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031977 116 FDQLIEVATKKKTISDEAAVILQ 138 (150)
Q Consensus 116 ~~~l~~~l~~~~~~~~~v~~~i~ 138 (150)
....+++|.+++.+-..++..++
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHHH
Confidence 33444555555555555555443
No 95
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=29.15 E-value=1.8e+02 Score=23.11 Aligned_cols=45 Identities=20% Similarity=0.196 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 031977 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSL 57 (150)
Q Consensus 13 ~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~ 57 (150)
...++...+-.++++.+.|+..|..|....+....+.++++.|..
T Consensus 11 ~~~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~rL~e 55 (302)
T 3ibp_A 11 SVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSE 55 (302)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 456677777778888888999999999999999888888888863
No 96
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=28.99 E-value=1.1e+02 Score=19.14 Aligned_cols=41 Identities=15% Similarity=0.061 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 98 MDEGKDYCERKIN---LLKSNFDQLIEVATKKKTISDEAAVILQ 138 (150)
Q Consensus 98 ~~eA~~~l~rr~~---~l~~~~~~l~~~l~~~~~~~~~v~~~i~ 138 (150)
+.+-...+.+|.+ ..+..++.+...|.++...+..+...+.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566655554 4445677777777777777777766665
No 97
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=28.98 E-value=96 Score=18.55 Aligned_cols=29 Identities=7% Similarity=0.160 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 109 INLLKSNFDQLIEVATKKKTISDEAAVIL 137 (150)
Q Consensus 109 ~~~l~~~~~~l~~~l~~~~~~~~~v~~~i 137 (150)
+..|+...+.+...-..+..++..+.+.+
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555544433
No 98
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=28.51 E-value=1.1e+02 Score=19.87 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 102 KDYCERKINLLKSNFDQLIEVATKKKTISDE 132 (150)
Q Consensus 102 ~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~ 132 (150)
.+||.+.++..++.+..+...|.++..++..
T Consensus 7 ~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s 37 (93)
T 3t98_B 7 ADYFRVLVQQFEVQLQQYRQQIEELENHLAT 37 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3577777777777777777777766666544
No 99
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=28.38 E-value=1.5e+02 Score=20.41 Aligned_cols=35 Identities=11% Similarity=0.219 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 107 RKINLLKSNFDQLIEVATKKKTISDEAAVILQAKL 141 (150)
Q Consensus 107 rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~ 141 (150)
+|+..|++........+.+.-+....+...++..+
T Consensus 92 ~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l 126 (132)
T 1ykh_B 92 RKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMI 126 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555444444444444444443
No 100
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=28.20 E-value=74 Score=16.97 Aligned_cols=30 Identities=10% Similarity=0.170 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 108 KINLLKSNFDQLIEVATKKKTISDEAAVIL 137 (150)
Q Consensus 108 r~~~l~~~~~~l~~~l~~~~~~~~~v~~~i 137 (150)
|.+.++...+++-+....+..+...+...+
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 456667777777777777777766666554
No 101
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=28.15 E-value=3.7e+02 Score=24.98 Aligned_cols=30 Identities=20% Similarity=0.102 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 99 DEGKDYCERKINLLKSNFDQLIEVATKKKT 128 (150)
Q Consensus 99 ~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~ 128 (150)
.+..+-+..++..|++...++++++.++..
T Consensus 1015 ~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1015 DKYKHETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555554444443
No 102
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=28.06 E-value=74 Score=16.93 Aligned_cols=30 Identities=3% Similarity=0.220 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 108 KINLLKSNFDQLIEVATKKKTISDEAAVIL 137 (150)
Q Consensus 108 r~~~l~~~~~~l~~~l~~~~~~~~~v~~~i 137 (150)
|.+.|+...+++-..-..+..+...+...+
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 456666677777666666666666666554
No 103
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=27.90 E-value=99 Score=18.33 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 17 LKAIKEQTDLEVNLLQDSLNNIRTAT 42 (150)
Q Consensus 17 L~~~~~ql~~e~~~l~~~~~~L~~~~ 42 (150)
|..-...|..+-..|...+..|....
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444433333
No 104
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=27.89 E-value=1.8e+02 Score=23.39 Aligned_cols=43 Identities=5% Similarity=0.101 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 100 EGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLK 142 (150)
Q Consensus 100 eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~ 142 (150)
-+..+|..|+..++..+..++..+..++..+..+...++.-..
T Consensus 302 ~~~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~ 344 (406)
T 4dyl_A 302 LTVESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEEE 344 (406)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4588999999999999999999999999999998888875543
No 105
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=27.57 E-value=59 Score=20.38 Aligned_cols=27 Identities=15% Similarity=0.068 Sum_probs=19.3
Q ss_pred cCCCeEEEEccCceeeecCHHHHHHHHH
Q 031977 79 DDARKVLVDIGTGYFVEKTMDEGKDYCE 106 (150)
Q Consensus 79 ~~~~~VlV~lG~g~~vE~~~~eA~~~l~ 106 (150)
.-.+.|+||+|.-.-. .+.++|.+.++
T Consensus 37 ~vGD~VLVH~GfAi~~-ideeeA~etl~ 63 (75)
T 2z1c_A 37 KPGDWVIVHTGFAIEK-LDEKKAMEILE 63 (75)
T ss_dssp CTTCEEEEETTEEEEE-ECHHHHHHHHH
T ss_pred CCCCEEEEecchhhhh-CCHHHHHHHHH
Confidence 4578999999854433 67788877765
No 106
>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein struc initiative; 1.85A {Shewanella oneidensis} SCOP: b.40.14.1
Probab=27.02 E-value=33 Score=23.03 Aligned_cols=44 Identities=16% Similarity=0.067 Sum_probs=27.2
Q ss_pred ceEEEecCCc------eeEeEEEcCCCeEEEEccCceeeecCHHHHHHHHH
Q 031977 62 AKMLVPLTAS------LYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCE 106 (150)
Q Consensus 62 ~eilvplg~~------~yv~g~i~~~~~VlV~lG~g~~vE~~~~eA~~~l~ 106 (150)
....|.+++. .+++..+.-.+.|||++|.-.-. .+.++|.+.++
T Consensus 38 ~~A~Vd~~Gv~reV~l~Lv~e~~~vGDyVLVHvGfAi~k-IDeeeA~etl~ 87 (103)
T 3d3r_A 38 QSVTVDTLGVRRDVSSHLMTEPLAIGDYVLIHIGFVMNK-IDRNDALQSLE 87 (103)
T ss_dssp TEEEEEETTEEEEEECTTBSSCCCTTCEEEEEEEEEEEE-ECHHHHHHHHH
T ss_pred CEEEEEcCCEEEEEEEEeecCCCCCCCEEEEeechhhhh-CCHHHHHHHHH
Confidence 3466666631 24443344578999999744332 57778877665
No 107
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=27.00 E-value=48 Score=21.59 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 100 EGKDYCERKINLLKSNFDQLIEVATKKKTIS 130 (150)
Q Consensus 100 eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~ 130 (150)
+..+.+..+++.+++.+..++..+..+...+
T Consensus 74 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 104 (108)
T 2vz4_A 74 DPRAHLRRQHELLSARIGKLQKMAAAVEQAM 104 (108)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888888888888888777776654
No 108
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=26.86 E-value=2e+02 Score=21.45 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 21 KEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (150)
Q Consensus 21 ~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~ 54 (150)
...|.++.+.++..+..+.....+|..+++..+.
T Consensus 141 ~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~ 174 (213)
T 1ik9_A 141 NEHLQKENERLLRDWNDVQGRFEKAVSAKEALET 174 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666666666665554
No 109
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=26.79 E-value=33 Score=26.05 Aligned_cols=67 Identities=12% Similarity=0.146 Sum_probs=38.8
Q ss_pred EEecCCceeEeEEEcC----CCeEEEEccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 65 LVPLTASLYVPGTLDD----ARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAA 134 (150)
Q Consensus 65 lvplg~~~yv~g~i~~----~~~VlV~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~ 134 (150)
|..+|+|.|.+.--+. +.+|..-+|- ++.|.|+.-+.+.+|...++....++.+.+..-...+..+.
T Consensus 2 ~~~~~~~~~~~~i~K~~~Ra~~~l~qk~G~---~~~T~D~~F~~~e~~F~~le~~~~kL~k~~k~y~~ai~~~~ 72 (243)
T 4a3a_A 2 MADIKTGIFAKNVQKRLNRAQEKVLQKLGK---ADETKDEQFEEYVQNFKRQEAEGTRLQRELRGYLAAIKGMQ 72 (243)
T ss_dssp ------------------CGGGCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHcCC---CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777654433 4455666664 68999999999999999999999888888776666655443
No 110
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.38 E-value=2.8e+02 Score=22.98 Aligned_cols=42 Identities=7% Similarity=-0.026 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 103 DYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQL 144 (150)
Q Consensus 103 ~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~ 144 (150)
+.++++...+++.++..++.+.+++++.+.....|.+..+..
T Consensus 540 ~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 540 EDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555567777777777777777777777777766666665544
No 111
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=26.14 E-value=1.5e+02 Score=19.97 Aligned_cols=53 Identities=15% Similarity=0.262 Sum_probs=41.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 031977 5 KGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSL 57 (150)
Q Consensus 5 ~~i~l~~l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~ 57 (150)
+.-.+..+-+..|..-....++-+..-+..+..|+..+......++.|..|+.
T Consensus 17 ~~~~~~~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLka 69 (110)
T 2v4h_A 17 RGSHMASMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKA 69 (110)
T ss_dssp TTCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred chhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566678888888888888888888999999988888888888887763
No 112
>2gyq_A YCFI, putative structural protein; structural genomics, APC6105, iron-binding, PSI, protein STR initiative; 1.40A {Rhodopseudomonas palustris} SCOP: a.25.1.4
Probab=26.14 E-value=51 Score=23.85 Aligned_cols=55 Identities=7% Similarity=0.103 Sum_probs=46.3
Q ss_pred EEEEccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 84 VLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQA 139 (150)
Q Consensus 84 VlV~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~ 139 (150)
.+-+|..=|+.|+-..+|..-+-++... .+....+..-+.+-+.++..++++++.
T Consensus 17 f~~~L~Diy~aE~q~~~aL~~~~~~a~~-p~Lk~~l~~H~~eT~~qi~rLe~i~~~ 71 (173)
T 2gyq_A 17 LLHGLRDIYYAEQQITKALPKMIEQATN-RDLSQGLTSHLEETQKQIERLDQVFKK 71 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677789999999999988888888 777888899999999999999988875
No 113
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=25.99 E-value=1.4e+02 Score=19.51 Aligned_cols=29 Identities=7% Similarity=0.063 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 107 RKINLLKSNFDQLIEVATKKKTISDEAAV 135 (150)
Q Consensus 107 rr~~~l~~~~~~l~~~l~~~~~~~~~v~~ 135 (150)
+|.+.|...+..++..|..-.....-+..
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl~K 43 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREALKK 43 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555444433
No 114
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=25.97 E-value=93 Score=23.24 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=29.3
Q ss_pred ccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCc
Q 031977 55 LSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTG 91 (150)
Q Consensus 55 L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g 91 (150)
|.++..|..|.|-..+|--|.|++.+.++|.|++.-+
T Consensus 165 L~~G~~Gd~IrVr~~Sgkiv~g~V~~~g~V~V~L~p~ 201 (219)
T 3tee_A 165 MNNAAVAQNARVRMTSGQIVSGTVDSDGNILINLDPN 201 (219)
T ss_dssp CSCBCTTSEEEEEETTSCEEEEEECTTSCEEEEC---
T ss_pred ccccCCCCEEEEECCCCCEEEEEEecCCEEEEEcCCC
Confidence 4445567888999999999999999999999998643
No 115
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=25.85 E-value=2.3e+02 Score=24.04 Aligned_cols=45 Identities=7% Similarity=0.045 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 97 TMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKL 141 (150)
Q Consensus 97 ~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~ 141 (150)
+++.=+.||+++++.-=.+|..|+..|......|..++..|..++
T Consensus 115 eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~ 159 (491)
T 1m1j_A 115 ELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKI 159 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666655556666666666666666666666666554
No 116
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=25.74 E-value=1e+02 Score=20.18 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 105 CERKINLLKSNFDQLIEVATKKKTISD 131 (150)
Q Consensus 105 l~rr~~~l~~~~~~l~~~l~~~~~~~~ 131 (150)
++|+++.+.+.++.+.+.+..-+..++
T Consensus 54 L~Rk~DKl~~ele~l~~~l~~~k~~F~ 80 (93)
T 3sjb_C 54 NNRKLDSLDKEINNLKDEIQSENKAFQ 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555554444444444333
No 117
>2asy_A Protein YDHR precursor; dimeric APHA+beta barrel, homodimer, structural genomics, ontario centre for structural proteomics, OCSP; NMR {Escherichia coli} SCOP: d.58.4.12
Probab=25.71 E-value=64 Score=22.33 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=22.6
Q ss_pred ccCceeeecCHHHHHHHHHHHHHHHHH
Q 031977 88 IGTGYFVEKTMDEGKDYCERKINLLKS 114 (150)
Q Consensus 88 lG~g~~vE~~~~eA~~~l~rr~~~l~~ 114 (150)
.+.|+|+-.+.+.|..|+....+.+..
T Consensus 71 eAGGIYLFe~~aaAEaYl~~h~aRl~~ 97 (123)
T 2asy_A 71 EAGGIYLFTDEKSALAYLEKHTARLKN 97 (123)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEeCCHHHHHHHHHHHHHHHHH
Confidence 467999999999999999988655543
No 118
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=25.62 E-value=71 Score=19.89 Aligned_cols=50 Identities=8% Similarity=-0.047 Sum_probs=29.6
Q ss_pred eeeecCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 92 YFVEKTMDE---GKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKL 141 (150)
Q Consensus 92 ~~vE~~~~e---A~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~ 141 (150)
+|.|.|.++ +...+.++..++..-+..-...-..+-.+++.+-..|++.=
T Consensus 11 w~~~~s~eel~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlE 63 (71)
T 3bbp_D 11 WHAEFTKEELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLE 63 (71)
T ss_dssp ------------------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 566666654 44556678888888888888888888899998888888653
No 119
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=25.51 E-value=1.1e+02 Score=17.94 Aligned_cols=27 Identities=7% Similarity=-0.008 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 111 LLKSNFDQLIEVATKKKTISDEAAVIL 137 (150)
Q Consensus 111 ~l~~~~~~l~~~l~~~~~~~~~v~~~i 137 (150)
.|+...+.+...-..+...+..+...+
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333
No 120
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=25.30 E-value=61 Score=24.80 Aligned_cols=73 Identities=8% Similarity=0.034 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEc------CCCeEEEE
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLD------DARKVLVD 87 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~------~~~~VlV~ 87 (150)
+..|.+..++|.+++..|+.....+.....|.....+.|+.-. . +...-|+.|+|- -.+.|+|+
T Consensus 21 ~~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~~~----~------~~~~~~i~A~VI~~~~~~~~~~i~Id 90 (255)
T 2j5u_A 21 LKNTYTENQHLKERLEELAQLESEVADLKKENKDLKESLDITD----S------IRDYDPLNASVISRNPTNWNDQVEID 90 (255)
T ss_dssp -----CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS----C------TTCEEEEEEEEEECCGGGTTTEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc----c------cccCceEEEEEEEECCCCcceEEEEe
Confidence 3444555566777777777777777766666666555444311 1 012234555553 25589999
Q ss_pred ccC--ceeeec
Q 031977 88 IGT--GYFVEK 96 (150)
Q Consensus 88 lG~--g~~vE~ 96 (150)
-|+ |+..-|
T Consensus 91 kGs~dGV~~gm 101 (255)
T 2j5u_A 91 KGSSDGVKPDM 101 (255)
T ss_dssp CCGGGTCCTTC
T ss_pred CCcccCCCCCC
Confidence 986 555444
No 121
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=25.17 E-value=1.3e+02 Score=18.94 Aligned_cols=41 Identities=7% Similarity=0.028 Sum_probs=30.1
Q ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 93 FVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEA 133 (150)
Q Consensus 93 ~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v 133 (150)
..|-++.++...+...+..++..+..+...+..++..+...
T Consensus 14 ~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~q 54 (86)
T 1x8y_A 14 AKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQ 54 (86)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888888888888888888777777777666543
No 122
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.76 E-value=1.7e+02 Score=19.86 Aligned_cols=41 Identities=10% Similarity=0.128 Sum_probs=27.5
Q ss_pred eeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 92 YFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDE 132 (150)
Q Consensus 92 ~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~ 132 (150)
-..|.++.++..-+...+..++..+..+...+..++..+..
T Consensus 62 ~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ 102 (131)
T 3tnu_A 62 ASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQ 102 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777777777777777666655543
No 123
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=24.75 E-value=1.4e+02 Score=19.08 Aligned_cols=40 Identities=13% Similarity=0.151 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAST 50 (150)
Q Consensus 11 ~l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e 50 (150)
.+|+++|..+...|..-++.-............+-.+-+.
T Consensus 23 el~le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~ 62 (86)
T 3nr7_A 23 ESTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQ 62 (86)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999998888777776666555555443333
No 124
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=24.73 E-value=81 Score=20.03 Aligned_cols=30 Identities=30% Similarity=0.454 Sum_probs=16.4
Q ss_pred EecCCceeEeEEEcCCCeEEEE--ccCceeeecC
Q 031977 66 VPLTASLYVPGTLDDARKVLVD--IGTGYFVEKT 97 (150)
Q Consensus 66 vplg~~~yv~g~i~~~~~VlV~--lG~g~~vE~~ 97 (150)
.|+.-|-++.. -|.++++|. -|..|||..+
T Consensus 17 ~P~~vG~v~e~--~dd~~~iVkss~g~~~~V~v~ 48 (85)
T 3h43_A 17 PPLIVGTVVDK--VGERKVVVKSSTGPSFLVNVS 48 (85)
T ss_dssp CCEEEEEEEEE--EETTEEEEEETTSSEEEEEBC
T ss_pred CCceEEEEEEE--cCCCEEEEEeCCCCeEEEEec
Confidence 34444445442 355677774 4556777654
No 125
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=24.63 E-value=1.3e+02 Score=18.78 Aligned_cols=32 Identities=3% Similarity=-0.023 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 101 GKDYCERKINLLKSNFDQLIEVATKKKTISDEA 133 (150)
Q Consensus 101 A~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v 133 (150)
|... =||.+..+.+++.+...+..+..++..|
T Consensus 47 Al~a-LkrKK~~E~qL~q~~~ql~~LE~q~~~i 78 (79)
T 4abm_A 47 ALQA-LKRKKRYEKQLAQIDGTLSTIEFQREAL 78 (79)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444 4667788888988888888888877665
No 126
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.58 E-value=3e+02 Score=22.77 Aligned_cols=35 Identities=20% Similarity=0.130 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 16 QLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAST 50 (150)
Q Consensus 16 qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e 50 (150)
+|.+...+++.+++.+.+.+......+.....-++
T Consensus 453 ~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~ 487 (597)
T 3oja_B 453 QLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEID 487 (597)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444555555555555555555554444433
No 127
>2hiq_A Hypothetical protein YDHR; hypothetical protein JW1657, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: d.58.4.12 PDB: 1wd6_A
Probab=24.12 E-value=50 Score=22.51 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=21.9
Q ss_pred ccCceeeecCHHHHHHHHHHHHHHHH
Q 031977 88 IGTGYFVEKTMDEGKDYCERKINLLK 113 (150)
Q Consensus 88 lG~g~~vE~~~~eA~~~l~rr~~~l~ 113 (150)
.+.|+|+--+.+.|..|+....+.+.
T Consensus 56 ~aGGiYLFes~~~AeaY~~~h~arl~ 81 (113)
T 2hiq_A 56 EAGGIYLFTDEKSALAYLEKHTARLK 81 (113)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHG
T ss_pred eeeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 36799999999999999999865554
No 128
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=23.96 E-value=1.6e+02 Score=19.34 Aligned_cols=46 Identities=13% Similarity=0.210 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 031977 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSL 57 (150)
Q Consensus 12 l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~ 57 (150)
+.++.|.......++-+..-+..|..|+..+.......+.+..|+.
T Consensus 2 ~~~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~ 47 (94)
T 3jsv_C 2 MQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKA 47 (94)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777888888888889999999998888888888864
No 129
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=23.46 E-value=2.3e+02 Score=23.23 Aligned_cols=36 Identities=8% Similarity=-0.117 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 97 TMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDE 132 (150)
Q Consensus 97 ~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~ 132 (150)
++++...-+..+++.++..+..+...+..+++++..
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777777777777777777777655
No 130
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=23.33 E-value=1.2e+02 Score=25.76 Aligned_cols=54 Identities=13% Similarity=0.232 Sum_probs=39.8
Q ss_pred CceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031977 90 TGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQ 143 (150)
Q Consensus 90 ~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~ 143 (150)
+|+=+.-.+.++..-+.+||+.|+..+..+++.-.......+.+.+.+..+..+
T Consensus 48 SGCrLqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q 101 (491)
T 1m1j_A 48 SGCRMQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEG 101 (491)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhh
Confidence 355566778888888999999999999888776666666666666666655543
No 131
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=23.24 E-value=2.4e+02 Score=21.11 Aligned_cols=30 Identities=10% Similarity=0.166 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 16 QLKAIKEQTDLEVNLLQDSLNNIRTATSRL 45 (150)
Q Consensus 16 qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~ 45 (150)
+-....+|+++++-.....++.|+...+++
T Consensus 27 ~~~~~~~~~~a~~~s~~s~~~dl~~s~~~l 56 (206)
T 3oa7_A 27 ERTEALQQLRVNYGSFVSEYNDLTKSHNTL 56 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666665555555555555544443
No 132
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=23.16 E-value=24 Score=19.14 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 102 KDYCERKINLLKSNFDQLIEVATKKKTI 129 (150)
Q Consensus 102 ~~~l~rr~~~l~~~~~~l~~~l~~~~~~ 129 (150)
++-+++|+..+....+.++..+..++..
T Consensus 6 i~avKkKiq~lq~q~d~aee~~~~~~~~ 33 (37)
T 3azd_A 6 LEAVRRKIRSLQEQNYHLENEVARLKKL 33 (37)
T ss_dssp CHHHHHHHHHHHHHTTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777776665543
No 133
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A*
Probab=23.06 E-value=73 Score=27.95 Aligned_cols=27 Identities=33% Similarity=0.551 Sum_probs=24.0
Q ss_pred cCceeeecCHHHHHHHHHHHHHHHHHH
Q 031977 89 GTGYFVEKTMDEGKDYCERKINLLKSN 115 (150)
Q Consensus 89 G~g~~vE~~~~eA~~~l~rr~~~l~~~ 115 (150)
|.|=|++.|.+||.+++.++++.+.+.
T Consensus 77 G~g~~~~iSWdeAl~~ia~~l~~i~~~ 103 (780)
T 1eu1_A 77 GNGDFVRVTWDEALDLVARELKRVQES 103 (780)
T ss_dssp TSSCEEECCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEecHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999888653
No 134
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=22.98 E-value=95 Score=16.41 Aligned_cols=29 Identities=3% Similarity=0.167 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 109 INLLKSNFDQLIEVATKKKTISDEAAVIL 137 (150)
Q Consensus 109 ~~~l~~~~~~l~~~l~~~~~~~~~v~~~i 137 (150)
.+.|+...+++-..-..+..+...+...+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34555555555555555555555555443
No 135
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1
Probab=22.82 E-value=78 Score=27.99 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=23.4
Q ss_pred cCceeeecCHHHHHHHHHHHHHHHHHH
Q 031977 89 GTGYFVEKTMDEGKDYCERKINLLKSN 115 (150)
Q Consensus 89 G~g~~vE~~~~eA~~~l~rr~~~l~~~ 115 (150)
|.|=|++.|.+||.+++..+++.+.+.
T Consensus 110 G~g~~~~iSWdeAl~~ia~~l~~i~~~ 136 (829)
T 1tmo_A 110 GDFRFVRVTWDKALTLFKHSLDEVQTQ 136 (829)
T ss_dssp TSCEEEECCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEecHHHHHHHHHHHHHHHHHh
Confidence 368899999999999999999887653
No 136
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=22.53 E-value=2.5e+02 Score=21.07 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031977 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDL 55 (150)
Q Consensus 15 ~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L 55 (150)
.+|-....+++.++..|......|+......+-..+.|+.|
T Consensus 118 ~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l 158 (209)
T 2wvr_A 118 EKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERL 158 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 137
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=22.39 E-value=1.6e+02 Score=18.70 Aligned_cols=35 Identities=6% Similarity=0.303 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLE 46 (150)
Q Consensus 12 l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~ 46 (150)
.+++.|...-..+......++..+..|+..+..+.
T Consensus 11 v~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~ 45 (103)
T 4i0x_B 11 FDLDHIEQVTSRARGFKEFVTENLDQLESRAQKLV 45 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666665555555555555555444443
No 138
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=22.23 E-value=78 Score=27.72 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=22.5
Q ss_pred CceeeecCHHHHHHHHHHHHHHHHH
Q 031977 90 TGYFVEKTMDEGKDYCERKINLLKS 114 (150)
Q Consensus 90 ~g~~vE~~~~eA~~~l~rr~~~l~~ 114 (150)
.|=|++.|.+||.+++.++++.+.+
T Consensus 109 ~g~~~~isWdeAl~~ia~~l~~i~~ 133 (765)
T 2vpz_A 109 EGKYRVATWEEALDHIAKKMLEIRE 133 (765)
T ss_dssp SCCEEECCHHHHHHHHHHHHHHHHH
T ss_pred CCceEEeeHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999988764
No 139
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=22.09 E-value=78 Score=27.45 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=22.9
Q ss_pred cCceeeecCHHHHHHHHHHHHHHHHH
Q 031977 89 GTGYFVEKTMDEGKDYCERKINLLKS 114 (150)
Q Consensus 89 G~g~~vE~~~~eA~~~l~rr~~~l~~ 114 (150)
|.|=|++.|.+||.+++.++++.+.+
T Consensus 71 G~g~~~~isWdeAl~~ia~~l~~i~~ 96 (727)
T 2e7z_A 71 GEQRWERISWDQALDEIAEKLKKIIA 96 (727)
T ss_dssp TCCCEEECCHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEecHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999888765
No 140
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=22.07 E-value=2.4e+02 Score=23.16 Aligned_cols=42 Identities=10% Similarity=0.023 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQA 139 (150)
Q Consensus 98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~ 139 (150)
++.=+.||+++++.-=..|..|+..|......|..++..|+-
T Consensus 118 Le~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~ 159 (390)
T 1deq_A 118 LRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDI 159 (390)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544445555666666666666666655543
No 141
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=21.91 E-value=1.6e+02 Score=18.52 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 031977 24 TDLEVNLLQDSLNNIR 39 (150)
Q Consensus 24 l~~e~~~l~~~~~~L~ 39 (150)
|..+-..|...+..|.
T Consensus 48 L~~eN~~L~~~v~~L~ 63 (78)
T 1gu4_A 48 LTAENERLQKKVEQLS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 142
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.84 E-value=2.8e+02 Score=22.08 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~ 54 (150)
+.+|.......+.++..|+..+..++..+.++...+..+..
T Consensus 14 ~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 14 VRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 143
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=21.71 E-value=1.8e+02 Score=20.21 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 101 GKDYCERKINLLKSNFDQLIEVATKK 126 (150)
Q Consensus 101 A~~~l~rr~~~l~~~~~~l~~~l~~~ 126 (150)
...++..+++.++.++..++.....+
T Consensus 91 ~~~ll~~~~~~l~~qi~~L~~~~~~L 116 (154)
T 2zhg_A 91 WKQLSSQWREELDRRIHTLVALRDEL 116 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433333
No 144
>3emo_C HIA (adhesin); transmembrane, outer membrane, trimeric autotransporter, membrane protein/cell adhesion complex; 3.00A {Haemophilus influenzae}
Probab=21.67 E-value=2.3e+02 Score=20.27 Aligned_cols=80 Identities=20% Similarity=0.266 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeE-------e-EEEc
Q 031977 11 KMSVEQLKAIKEQTD---LEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYV-------P-GTLD 79 (150)
Q Consensus 11 ~l~~~qL~~~~~ql~---~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv-------~-g~i~ 79 (150)
..+..||....+++. ..+..|..++..+......--..--++-.|+.....-+..|-+|.|.|= - ..+.
T Consensus 54 AvN~~Ql~~~~~~v~n~~~~in~L~~~I~~~~k~a~aGiA~A~A~A~LP~~~~pGk~~va~G~G~Y~GqsAvAvG~s~~s 133 (162)
T 3emo_C 54 AINGSQLYAVAKGVTNLAGQVNNLEGKVNKVGKRADAGTASALAASQLPQATMPGKSMVAIAGSSYQGQNGLAIGVSRIS 133 (162)
T ss_dssp BCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSTTCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred cccHHHHhhhhhhhhhhHHHHHHHHhhhhhhHHhHHHHHHHHHHhccCCCcCCCCCEEEEEEEEeeCCCcEEEEEeeeec
Confidence 455678877766543 3444444444444444433335566777886422122456777765541 1 2455
Q ss_pred CCCeEEEEccC
Q 031977 80 DARKVLVDIGT 90 (150)
Q Consensus 80 ~~~~VlV~lG~ 90 (150)
+..++++.+|.
T Consensus 134 ~N~~~~~k~s~ 144 (162)
T 3emo_C 134 DNGKVIIRLSG 144 (162)
T ss_dssp TTSSEEEEEEE
T ss_pred cCCcEEEEEEE
Confidence 66667666554
No 145
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=21.41 E-value=1.6e+02 Score=18.50 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031977 105 CERKINLLKSNFDQLIEVA 123 (150)
Q Consensus 105 l~rr~~~l~~~~~~l~~~l 123 (150)
|..+|..|+..+..+...+
T Consensus 27 le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 27 LPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 146
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=21.40 E-value=79 Score=20.13 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031977 20 IKEQTDLEVNLLQDSLNNIR 39 (150)
Q Consensus 20 ~~~ql~~e~~~l~~~~~~L~ 39 (150)
+.+|++++++.|...++.|+
T Consensus 53 ~~~QideeV~~LKe~IdaLN 72 (83)
T 1zke_A 53 FFTQLSEEVERLKELINALN 72 (83)
T ss_dssp GHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555554444444
No 147
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.17 E-value=99 Score=19.08 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=24.0
Q ss_pred CCCceEEEecCCceeEeEEEcCCC----eEEEEccC
Q 031977 59 PQGAKMLVPLTASLYVPGTLDDAR----KVLVDIGT 90 (150)
Q Consensus 59 ~~~~eilvplg~~~yv~g~i~~~~----~VlV~lG~ 90 (150)
.++.++|.-=+.|+|.+|+|...+ .-+|.-+.
T Consensus 11 ~eGqdVLarWsDGlfYlGtV~kV~~~~~~ClV~FeD 46 (68)
T 2e5p_A 11 WEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFED 46 (68)
T ss_dssp CTTCEEEEECTTSSEEEEEEEEEETTTTEEEEEETT
T ss_pred ccCCEEEEEecCCcEEEeEEEEEecCCcEEEEEEcc
Confidence 468899999999999999998533 34554443
No 148
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=21.12 E-value=1.4e+02 Score=18.67 Aligned_cols=19 Identities=5% Similarity=0.221 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031977 14 VEQLKAIKEQTDLEVNLLQ 32 (150)
Q Consensus 14 ~~qL~~~~~ql~~e~~~l~ 32 (150)
|++|...-..+..-...++
T Consensus 2 peel~~~a~~~~~~~~~i~ 20 (94)
T 4i0x_A 2 IDEVGALSKFAASLADQMR 20 (94)
T ss_dssp -CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444333333333333
No 149
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=21.05 E-value=7.6e+02 Score=26.18 Aligned_cols=47 Identities=15% Similarity=0.105 Sum_probs=35.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 96 KTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLK 142 (150)
Q Consensus 96 ~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~ 142 (150)
.|..++.+-++.+++..++.+...+..++++.+.+..+....+.+..
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ 2056 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIR 2056 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888887777777666655543
No 150
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=20.83 E-value=2.3e+02 Score=22.86 Aligned_cols=51 Identities=10% Similarity=0.025 Sum_probs=0.0
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 031977 95 EKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLA 145 (150)
Q Consensus 95 E~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~ 145 (150)
+.........|.+++..+++.+-.++.+...-+...-.+.+.|+.+..|.+
T Consensus 392 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (471)
T 3mq9_A 392 VMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQ 442 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHH
No 151
>2uwj_E Type III export protein PSCE; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=20.79 E-value=1.4e+02 Score=18.57 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 031977 33 DSLNNIRTATSRLESASTALHDLS 56 (150)
Q Consensus 33 ~~~~~L~~~~~e~~~~~e~l~~L~ 56 (150)
++++.|.....-|..++..|+.++
T Consensus 45 qqyQ~~~qQ~~AieAal~Iie~i~ 68 (70)
T 2uwj_E 45 ERFQFLQQQARALEGGLGILSQLT 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455677777777888888887764
No 152
>4gwp_C Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_C 3rj1_C 1edi_A 1edj_A 1edk_A 1edl_A
Probab=20.60 E-value=86 Score=25.93 Aligned_cols=22 Identities=9% Similarity=0.050 Sum_probs=17.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH
Q 031977 6 GGGMEKMSVEQLKAIKEQTDLE 27 (150)
Q Consensus 6 ~i~l~~l~~~qL~~~~~ql~~e 27 (150)
..|++.+|.+.|.+++.++.+-
T Consensus 22 ~~d~s~vPv~aLEslR~RL~QL 43 (407)
T 4gwp_C 22 SFDFNGVPGQALDAVRMRLAQL 43 (407)
T ss_dssp -CCSCCCCCTTHHHHHHHHHHH
T ss_pred CCCCCCCchHHHHHHHHHHHHH
Confidence 3688999999999888888653
No 153
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=20.52 E-value=1.5e+02 Score=17.63 Aligned_cols=34 Identities=12% Similarity=-0.025 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 104 YCERKINLLKSNFDQLIEVATKKKTISDEAAVIL 137 (150)
Q Consensus 104 ~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i 137 (150)
.+..+.+.|+..-..|...+..+..++..+.+.|
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555544443
No 154
>3hiu_A Uncharacterized protein; APC40011, XCC3681, xanthomonas campestris PV. campestris STR. ATCC 33913, structural genomics, PSI-2; HET: MSE; 1.85A {Xanthomonas campestris PV}
Probab=20.37 E-value=63 Score=23.28 Aligned_cols=52 Identities=12% Similarity=0.084 Sum_probs=39.1
Q ss_pred ccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 88 IGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQA 139 (150)
Q Consensus 88 lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~ 139 (150)
+..=|++|+-..+|..-+.+|...-.+....+..-+.+.+.++..++++++.
T Consensus 11 L~Diy~aE~Q~~~aL~~ma~~~a~~peLk~a~e~Hl~eT~~qi~rLe~vf~~ 62 (166)
T 3hiu_A 11 LQDAYAMEKEAETMMAAMASRIEHYPELKRRIEQHVEETQQQSAGVQRCLEL 62 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445777877777777777776666666777788888888888888888874
No 155
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=20.20 E-value=1.6e+02 Score=19.25 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977 16 QLKAIKEQTDLEVNLLQDSLNNIRT 40 (150)
Q Consensus 16 qL~~~~~ql~~e~~~l~~~~~~L~~ 40 (150)
+|......+-.|+-.+..-++.+..
T Consensus 34 ~lk~~L~Kig~Ei~~l~eLLn~~E~ 58 (91)
T 4aj5_A 34 TLKTVLNKIGDEIIVINELLNKLEL 58 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444333333333
No 156
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea center, BI-functional, prolidase, nerve agents, XAA-Pro DIP hydrolase; 1.80A {Alteromonas macleodii}
Probab=20.16 E-value=2.4e+02 Score=23.20 Aligned_cols=37 Identities=27% Similarity=0.470 Sum_probs=24.9
Q ss_pred CceEEEecCCce----eEeEE---EcCCCeEEEEccC---ceeeecC
Q 031977 61 GAKMLVPLTASL----YVPGT---LDDARKVLVDIGT---GYFVEKT 97 (150)
Q Consensus 61 ~~eilvplg~~~----yv~g~---i~~~~~VlV~lG~---g~~vE~~ 97 (150)
+....|..|.+. |++.. +.+.+-|+||+|+ ||+...|
T Consensus 211 ~f~~IVasG~naa~~H~~~~~~~~l~~GdlVliD~G~~~~GY~sDiT 257 (451)
T 3rva_A 211 PYTSIVALNEHASILHYMQCDTVAPKESRSFLIDAGANYHGYAADIT 257 (451)
T ss_dssp SSCCEEEEGGGGGCTTCCCCCSSCCSSCCEEEEEEEEEETTEEEEEE
T ss_pred CcCcEEEECCcccccCCCCCCCcccCCCCEEEEEeeEEECCEEEEeE
Confidence 456677777543 44432 3567899999997 7877664
Done!