BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031979
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3P63|A Chain A, Structure Of M. Laminosus Ferredoxin With A Shorter L1,2
Loop
pdb|3P63|B Chain B, Structure Of M. Laminosus Ferredoxin With A Shorter L1,2
Loop
Length = 96
Score = 148 bits (374), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 68/97 (70%), Positives = 81/97 (83%), Gaps = 1/97 (1%)
Query: 53 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
A YKV LI P G + + PDD YI+D+AE+ G++LPYSCRAGACSTCAG+++SG+VDQS
Sbjct: 1 ATYKVTLINPTGNKT-IEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQS 59
Query: 113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
D SFLDD Q+E G+VLTCVAYPTSDCVI THKE ELY
Sbjct: 60 DQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEELY 96
>pdb|1OFF|A Chain A, 2fe-2s Ferredoxin From Synechocystis Sp. Pcc 6803
Length = 97
Score = 143 bits (361), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/98 (68%), Positives = 81/98 (82%), Gaps = 1/98 (1%)
Query: 52 MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
MA Y VKLI P+GE + + DD YI+D+AE+ G++LPYSCRAGACSTCAG++ +GSVDQ
Sbjct: 1 MASYTVKLITPDGESS-IECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQ 59
Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
SD SFLDD Q+E G+VLTCVAYPTSDC I THKE +LY
Sbjct: 60 SDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDLY 97
>pdb|1RFK|A Chain A, Crystal Structure Of 2fe2s Ferredoxin From Thermophilic
Cyanobacterium Mastigocladus Laminosus
pdb|1RFK|B Chain B, Crystal Structure Of 2fe2s Ferredoxin From Thermophilic
Cyanobacterium Mastigocladus Laminosus
Length = 98
Score = 143 bits (361), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/98 (68%), Positives = 79/98 (80%), Gaps = 1/98 (1%)
Query: 53 AVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
A YKV LI G + PDD YI+D+AE+ G++LPYSCRAGACSTCAG+++SG+VDQ
Sbjct: 1 ATYKVTLINEAEGLNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQ 60
Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
SD SFLDD Q+E G+VLTCVAYPTSDCVI THKE ELY
Sbjct: 61 SDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEELY 98
>pdb|2PVG|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin
And Ferredoxin:thioredoxin Reductase
pdb|2PVO|D Chain D, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 96
Score = 142 bits (359), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 67/97 (69%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
Query: 53 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
A Y VKLI P+GE + + DD YI+D+AE+ G+ELPYSCRAGACSTCAG++ +GSVDQS
Sbjct: 1 ASYTVKLITPDGESS-IECSDDTYILDAAEEAGLELPYSCRAGACSTCAGKITAGSVDQS 59
Query: 113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
D SFLDD Q+E G+VLTCVAYPTSDC I THKE +LY
Sbjct: 60 DQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDLY 96
>pdb|1ROE|A Chain A, Nmr Study Of 2fe-2s Ferredoxin Of Synechococcus Elongatus
pdb|2CJN|A Chain A, Structure Of Ferredoxin, Nmr, Minimized Average Structure
pdb|2CJO|A Chain A, Structure Of Ferredoxin, Nmr, 10 Structures
Length = 97
Score = 140 bits (354), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 63/96 (65%), Positives = 77/96 (80%)
Query: 53 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
A YKV L+ P+G E D P+D YI+D AE+ G++LP+SCRAGACSTCAG+++ G VDQS
Sbjct: 1 ATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQS 60
Query: 113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 148
D SFLDD Q+EKGFVLTCVAYP SDC I T++E EL
Sbjct: 61 DQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 96
>pdb|1FXA|A Chain A, Crystallization And Structure Determination To
2.5-Angstroms Resolution Of The Oxidized [2fe-2s]
Ferredoxin Isolated From Anabaena 7120
pdb|1FXA|B Chain B, Crystallization And Structure Determination To
2.5-Angstroms Resolution Of The Oxidized [2fe-2s]
Ferredoxin Isolated From Anabaena 7120
pdb|1QT9|A Chain A, Oxidized [2fe-2s] Ferredoxin From Anabaena Pcc7119
pdb|1CZP|A Chain A, Anabaena Pcc7119 [2fe-2s] Ferredoxin In The Reduced And
Oxixized State At 1.17 A
pdb|1CZP|B Chain B, Anabaena Pcc7119 [2fe-2s] Ferredoxin In The Reduced And
Oxixized State At 1.17 A
pdb|1EWY|C Chain C, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase
Complex
Length = 98
Score = 139 bits (350), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 65/98 (66%), Positives = 80/98 (81%), Gaps = 1/98 (1%)
Query: 53 AVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
A +KV LI G ++E + PDD YI+D+AE+ G +LP+SCRAGACSTCAG++VSG+VDQ
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
SD SFLDD Q+E G+VLTCVAYPTSD VI THKE +LY
Sbjct: 61 SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDLY 98
>pdb|1J7C|A Chain A, Structure Of The Anabaena Ferredoxin Mutant E95k
Length = 98
Score = 139 bits (349), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 65/98 (66%), Positives = 80/98 (81%), Gaps = 1/98 (1%)
Query: 53 AVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
A +KV LI G ++E + PDD YI+D+AE+ G +LP+SCRAGACSTCAG++VSG+VDQ
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
SD SFLDD Q+E G+VLTCVAYPTSD VI THKE +LY
Sbjct: 61 SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEKDLY 98
>pdb|1DOX|A Chain A, 1h And 15n Sequential Assignment, Secondary Structure And
Tertiary Fold Of [2fe-2s] Ferredoxin From Synechocystis
Sp. Pcc 6803
pdb|1DOY|A Chain A, 1h And 15n Sequential Assignment, Secondary Structure And
Tertiary Fold Of [2fe-2s] Ferredoxin From Synechocystis
Sp. Pcc 6803
pdb|2KAJ|A Chain A, Nmr Structure Of Gallium Substituted Ferredoxin
Length = 96
Score = 139 bits (349), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 65/96 (67%), Positives = 79/96 (82%), Gaps = 1/96 (1%)
Query: 53 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
A Y VKLI P+GE + + DD YI+D+AE+ G++LPYSCRAGACSTCAG++ +GSVDQS
Sbjct: 1 ASYTVKLITPDGESS-IECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQS 59
Query: 113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 148
D SFLDD Q+E G+VLTCVAYPTSDC I THKE +L
Sbjct: 60 DQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 95
>pdb|1QOG|A Chain A, Ferredoxin Mutation S47a
pdb|1QOG|B Chain B, Ferredoxin Mutation S47a
Length = 98
Score = 138 bits (347), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 64/98 (65%), Positives = 80/98 (81%), Gaps = 1/98 (1%)
Query: 53 AVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
A +KV LI G ++E + PDD YI+D+AE+ G +LP+SCRAGAC+TCAG++VSG+VDQ
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACATCAGKLVSGTVDQ 60
Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
SD SFLDD Q+E G+VLTCVAYPTSD VI THKE +LY
Sbjct: 61 SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDLY 98
>pdb|1QOF|A Chain A, Ferredoxin Mutation Q70k
pdb|1QOF|B Chain B, Ferredoxin Mutation Q70k
Length = 98
Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/98 (65%), Positives = 80/98 (81%), Gaps = 1/98 (1%)
Query: 53 AVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
A +KV LI G ++E + PDD YI+D+AE+ G +LP+SCRAGACSTCAG++VSG+VDQ
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
SD SFLDD ++E G+VLTCVAYPTSD VI THKE +LY
Sbjct: 61 SDQSFLDDDKIEAGYVLTCVAYPTSDVVIQTHKEEDLY 98
>pdb|1J7B|A Chain A, Structure Of The Anabaena Ferredoxin Mutant E94k
Length = 98
Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/98 (65%), Positives = 80/98 (81%), Gaps = 1/98 (1%)
Query: 53 AVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
A +KV LI G ++E + PDD YI+D+AE+ G +LP+SCRAGACSTCAG++VSG+VDQ
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
SD SFLDD Q+E G+VLTCVAYPTSD VI THK+ +LY
Sbjct: 61 SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKKEDLY 98
>pdb|1QOB|A Chain A, Ferredoxin Mutation D62k
pdb|1QOB|B Chain B, Ferredoxin Mutation D62k
Length = 98
Score = 136 bits (343), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 64/98 (65%), Positives = 79/98 (80%), Gaps = 1/98 (1%)
Query: 53 AVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
A +KV LI G ++E + PDD YI+D+AE+ G +LP+SCRAGACSTCAG++VSG+VDQ
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
S SFLDD Q+E G+VLTCVAYPTSD VI THKE +LY
Sbjct: 61 SKQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDLY 98
>pdb|1J7A|A Chain A, Structure Of The Anabaena Ferredoxin D68k Mutant
Length = 98
Score = 136 bits (343), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 64/98 (65%), Positives = 79/98 (80%), Gaps = 1/98 (1%)
Query: 53 AVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
A +KV LI G ++E + PDD YI+D+AE+ G +LP+SCRAGACSTCAG++VSG+VDQ
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
SD SFLD Q+E G+VLTCVAYPTSD VI THKE +LY
Sbjct: 61 SDQSFLDKDQIEAGYVLTCVAYPTSDVVIQTHKEEDLY 98
>pdb|1QOA|A Chain A, Ferredoxin Mutation C49s
pdb|1QOA|B Chain B, Ferredoxin Mutation C49s
Length = 98
Score = 136 bits (342), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 64/98 (65%), Positives = 79/98 (80%), Gaps = 1/98 (1%)
Query: 53 AVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
A +KV LI G ++E + PDD YI+D+AE+ G +LP+SCRAGACST AG++VSG+VDQ
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTSAGKLVSGTVDQ 60
Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
SD SFLDD Q+E G+VLTCVAYPTSD VI THKE +LY
Sbjct: 61 SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDLY 98
>pdb|1PFD|A Chain A, The Solution Structure Of High Plant Parsley [2fe-2s]
Ferredoxin, Nmr, 18 Structures
Length = 96
Score = 135 bits (340), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 63/96 (65%), Positives = 79/96 (82%), Gaps = 1/96 (1%)
Query: 53 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
A Y VKLI P+GE EF DD Y++D AE+ G+++PYSCRAG+CS+CAG++VSGS+DQS
Sbjct: 1 ATYNVKLITPDGE-VEFKCDDDVYVLDQAEEEGIDIPYSCRAGSCSSCAGKVVSGSIDQS 59
Query: 113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 148
D SFLDD+QM+ G+VLTC AYPTSD VI THKE E+
Sbjct: 60 DQSFLDDEQMDAGYVLTCHAYPTSDVVIETHKEEEI 95
>pdb|1GAQ|B Chain B, Crystal Structure Of The Complex Between Ferredoxin And
Ferredoxin-Nadp+ Reductase
pdb|3B2F|A Chain A, Maize Ferredoxin 1
pdb|3B2F|B Chain B, Maize Ferredoxin 1
Length = 98
Score = 135 bits (340), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 65/96 (67%), Positives = 76/96 (79%), Gaps = 1/96 (1%)
Query: 53 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
A Y VKLI P GE E PDD YI+D AE+ G++LPYSCRAG+CS+CAG++VSGSVDQS
Sbjct: 1 ATYNVKLITPEGE-VELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQS 59
Query: 113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 148
D S+LDD Q+ G+VLTC AYPTSD VI THKE EL
Sbjct: 60 DQSYLDDGQIADGWVLTCHAYPTSDVVIETHKEEEL 95
>pdb|1AWD|A Chain A, Ferredoxin [2fe-2s] Oxidized Form From Chlorella Fusca
Length = 94
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/95 (67%), Positives = 77/95 (81%), Gaps = 1/95 (1%)
Query: 55 YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDG 114
YKV L P+GEE + P+D YI+D+AE+ G++LPYSCRAGACS+CAG++ SG VDQSD
Sbjct: 1 YKVTLKTPSGEET-IECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQ 59
Query: 115 SFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
SFLDD QM KGFVLTCVAYPTSD I TH+E+ LY
Sbjct: 60 SFLDDAQMGKGFVLTCVAYPTSDVTILTHQEAALY 94
>pdb|4FXC|A Chain A, Tertiary Structure Of [2fe-2s] Ferredoxin From Spirulina
Platensis Refined At 2.5 Angstroms Resolution:
Structural Comparisons Of Plant-Type Ferredoxins And An
Electrostatic Potential Analysis
Length = 98
Score = 133 bits (335), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 64/98 (65%), Positives = 75/98 (76%), Gaps = 1/98 (1%)
Query: 53 AVYKVKLIGPNGEENE-FDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
A YKV LI NE D DD YI+D+AE+ G++LPYSCRAGACSTCAG + SG++DQ
Sbjct: 1 ATYKVTLINEAEGINETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGTITSGTIDQ 60
Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
SD SFLDD Q+E G+VLTCVAYPTSDC I TH+E LY
Sbjct: 61 SDQSFLDDDQIEAGYVLTCVAYPTSDCTIKTHQEEGLY 98
>pdb|3B2G|A Chain A, Leptolyngbya Boryana Ferredoxin
pdb|3B2G|B Chain B, Leptolyngbya Boryana Ferredoxin
Length = 98
Score = 132 bits (332), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 60/96 (62%), Positives = 76/96 (79%), Gaps = 1/96 (1%)
Query: 55 YKVKLIGPN-GEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSD 113
+KV LI G + PDD YI+D+AE+ G++LPYSCRAGACSTCAG++ +G+VDQSD
Sbjct: 3 FKVTLINETEGLNTTIEVPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKITAGTVDQSD 62
Query: 114 GSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
SFLDD Q++ G+VLTCVAYPTSDC I TH+E +LY
Sbjct: 63 QSFLDDDQIQAGYVLTCVAYPTSDCTILTHQEEDLY 98
>pdb|3AV8|A Chain A, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I From
Aphanothece Sacrum At 1.46 A Resolution
pdb|3AV8|B Chain B, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I From
Aphanothece Sacrum At 1.46 A Resolution
pdb|3AV8|C Chain C, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I From
Aphanothece Sacrum At 1.46 A Resolution
pdb|3AV8|D Chain D, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I From
Aphanothece Sacrum At 1.46 A Resolution
Length = 97
Score = 130 bits (328), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/98 (65%), Positives = 76/98 (77%), Gaps = 2/98 (2%)
Query: 53 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSV-DQ 111
A YKV L P+G+ N PDD YI+D AE+ G++LPYSCRAGACSTCAG++VSG DQ
Sbjct: 1 ASYKVTLKTPDGD-NVITVPDDEYILDVAEEQGLDLPYSCRAGACSTCAGKLVSGPAPDQ 59
Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
SD SFLDD Q++ G++LTCVAYPT DCVI THKE LY
Sbjct: 60 SDQSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEALY 97
>pdb|3AB5|A Chain A, Crystal Structure Of The 2fe 2s Ferredoxin From
Cyanidioschyzon Merolae
pdb|3AB5|B Chain B, Crystal Structure Of The 2fe 2s Ferredoxin From
Cyanidioschyzon Merolae
Length = 97
Score = 129 bits (325), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 76/97 (78%), Gaps = 1/97 (1%)
Query: 54 VYKVKLIGP-NGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
+YK++L+ G + D YI+D+AE+ G++LPYSCRAGACSTCAG++V GSVDQS
Sbjct: 1 MYKIQLVNQKEGIDVTIQCAGDQYILDAAEEQGVDLPYSCRAGACSTCAGKLVKGSVDQS 60
Query: 113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
D SFLD+ Q+ KGF+LTCVAYPTSDCVI TH+E LY
Sbjct: 61 DQSFLDEDQISKGFILTCVAYPTSDCVIQTHQEEALY 97
>pdb|1FXI|A Chain A, Structure Of The [2fe-2s] Ferredoxin I From The Blue-Green
Alga Aphanothece Sacrum At 2.2 Angstroms Resolution
pdb|1FXI|B Chain B, Structure Of The [2fe-2s] Ferredoxin I From The Blue-Green
Alga Aphanothece Sacrum At 2.2 Angstroms Resolution
pdb|1FXI|C Chain C, Structure Of The [2fe-2s] Ferredoxin I From The Blue-Green
Alga Aphanothece Sacrum At 2.2 Angstroms Resolution
pdb|1FXI|D Chain D, Structure Of The [2fe-2s] Ferredoxin I From The Blue-Green
Alga Aphanothece Sacrum At 2.2 Angstroms Resolution
Length = 96
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 73/97 (75%), Gaps = 1/97 (1%)
Query: 53 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
A YKV L P+G+ N PDD YI+D AE+ G++LPYSCRAGACSTCAG++VSG
Sbjct: 1 ASYKVTLKTPDGD-NVITVPDDEYILDVAEEEGLDLPYSCRAGACSTCAGKLVSGPAPDE 59
Query: 113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
D SFLDD Q++ G++LTCVAYPT DCVI THKE LY
Sbjct: 60 DQSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEALY 96
>pdb|1A70|A Chain A, Spinach Ferredoxin
Length = 97
Score = 124 bits (311), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 56/94 (59%), Positives = 74/94 (78%), Gaps = 1/94 (1%)
Query: 55 YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDG 114
YKV L+ P G EF PDD YI+D+AE+ G++LPYSCRAG+CS+CAG++ +GS++Q D
Sbjct: 3 YKVTLVTPTGN-VEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQ 61
Query: 115 SFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 148
SFLDD Q+++G+VLTC AYP SD I THK+ EL
Sbjct: 62 SFLDDDQIDEGWVLTCAAYPVSDVTIETHKKEEL 95
>pdb|1FRR|A Chain A, Crystal Structure Of [2fe-2s] Ferredoxin I From Equisetum
Arvense At 1.8 Angstroms Resolution
pdb|1FRR|B Chain B, Crystal Structure Of [2fe-2s] Ferredoxin I From Equisetum
Arvense At 1.8 Angstroms Resolution
Length = 95
Score = 124 bits (310), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 59/95 (62%), Positives = 74/95 (77%), Gaps = 1/95 (1%)
Query: 55 YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDG 114
YK L P+GE D P+ I+D+AE+ G +LP+SCRAGACS+C G++VSGSVD+S+G
Sbjct: 2 YKTVLKTPSGEFT-LDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEG 60
Query: 115 SFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
SFLDD QME+GFVLTC+A P SD VI THKE EL+
Sbjct: 61 SFLDDGQMEEGFVLTCIAIPESDLVIETHKEEELF 95
>pdb|1IUE|A Chain A, Crystal Structure Analysis Of Ferredoxin From Plasmodium
Falciparum
pdb|1IUE|B Chain B, Crystal Structure Analysis Of Ferredoxin From Plasmodium
Falciparum
Length = 98
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 53 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
A Y + L +GE+ + + +D YI+D++E +ELPYSCR G+CSTCA ++V G VD
Sbjct: 1 AFYNITLRTNDGEK-KIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDND 59
Query: 113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
D S+LD++Q++K ++L C YP SDCVI THKE EL+
Sbjct: 60 DQSYLDEEQIKKKYILLCTCYPKSDCVIETHKEDELH 96
>pdb|1WRI|A Chain A, Crystal Structure Of Ferredoxin Isoform Ii From E. Arvense
Length = 93
Score = 106 bits (264), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/94 (57%), Positives = 69/94 (73%), Gaps = 2/94 (2%)
Query: 55 YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDG 114
YKV L P+G+ FD +ID + +LP SC+AGACSTC G++VSG+VDQS+G
Sbjct: 2 YKVTLKTPDGDIT-FDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEG 59
Query: 115 SFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 148
SFLDD+Q+E+G+VLTC+A P SD VI THKE EL
Sbjct: 60 SFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93
>pdb|1FRD|A Chain A, Molecular Structure Of The Oxidized, Recombinant,
Heterocyst (2fe-2s) Ferredoxin From Anabaena 7120
Determined To 1.7 Angstroms Resolution
Length = 98
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 67/97 (69%), Gaps = 1/97 (1%)
Query: 53 AVYKVKLIGPNGE-ENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
A Y+V+LI + + + ++ I+D AE+ G+ELP+SC +G+CS+C G++V G VDQ
Sbjct: 1 ASYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQ 60
Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 148
SD FLDD+QM KGF L CV YP S+C I TH+E L
Sbjct: 61 SDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQEPYL 97
>pdb|1DOI|A Chain A, 2fe-2s Ferredoxin From Haloarcula Marismortui
Length = 128
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 76 YIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQME-KGFVLTCVAYP 134
YI+++AE G + P+SCRAGAC+ CA ++ G +D L D+++E K LTC+ P
Sbjct: 47 YILEAAEAQGYDWPFSCRAGACANCAAIVLEGDIDMDMQQILSDEEVEDKNVRLTCIGSP 106
Query: 135 TSDCV--IYTHK 144
+D V +Y K
Sbjct: 107 DADEVKIVYNAK 118
>pdb|1E10|A Chain A, [2fe-2s]-Ferredoxin From Halobacterium Salinarum
Length = 128
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 61 GPNGEE-NEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDD 119
G +GE+ + + YI+++AE G + P+SCRAGAC+ CA + G +D L D
Sbjct: 31 GLDGEDYGTMEVAEGEYILEAAEAQGYDWPFSCRAGACANCASIVKEGEIDMDMQQILSD 90
Query: 120 KQM-EKGFVLTCVAYPTSDCV--IYTHK 144
+++ EK LTC+ P +D V +Y K
Sbjct: 91 EEVEEKDVRLTCIGSPAADEVKIVYNAK 118
>pdb|1E0Z|A Chain A, [2fe-2s]-Ferredoxin From Halobacterium Salinarum
Length = 128
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 61 GPNGEE-NEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDD 119
G +GE+ + + YI+++AE G + P+SCRAGAC+ CA + G +D L D
Sbjct: 31 GLDGEDYGTMEVAEGEYILEAAEAQGYDWPFSCRAGACANCASIVKEGEIDMDMQQILSD 90
Query: 120 KQM-EKGFVLTCVAYPTSDCVIYTHKESEL 148
+++ EK LTC+ P +D V + L
Sbjct: 91 EEVEEKDVRLTCIGSPAADEVKIVYNAXHL 120
>pdb|1KRH|A Chain A, X-Ray Stucture Of Benzoate Dioxygenase Reductase
pdb|1KRH|B Chain B, X-Ray Stucture Of Benzoate Dioxygenase Reductase
Length = 338
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 79 DSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDD----KQMEKGFVLTCVAYP 134
D+A + +P CR G C TC SG+ D + ++++D ++ ++G+VL C P
Sbjct: 28 DAAYRQQINIPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYVLACQCRP 87
Query: 135 TSDCVIYTHKESEL 148
TSD V SE+
Sbjct: 88 TSDAVFQIQASSEV 101
>pdb|1JQ4|A Chain A, [2fe-2s] Domain Of Methane Monooxygenase Reductase From
Methylococcus Capsulatus (Bath)
Length = 98
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSD 113
V+ + + +GE F+ D +I +A + L SCR G C+TC G D
Sbjct: 4 VHTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGDYDLKG 63
Query: 114 GSF--LDDKQMEKGFVLTCVAYPTSDCVI---YTH 143
S L ++ E+G VL C YP +D I YTH
Sbjct: 64 CSVQALPPEEEEEGLVLLCRTYPKTDLEIELPYTH 98
>pdb|3ZYY|X Chain X, Reductive Activator For Corrinoid,Iron-Sulfur Protein
pdb|3ZYY|Y Chain Y, Reductive Activator For Corrinoid,Iron-Sulfur Protein
Length = 631
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 52 MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR-AGACSTCAGQMVSGSVD 110
MA YKV L P ++ E ++ ++++ G+ + C AG C C ++V G
Sbjct: 1 MAEYKV-LFKP--DQKEVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQKR 57
Query: 111 QSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 148
L +++ +G+VL C YP SD +I +S L
Sbjct: 58 VESYGKLKQEEIAQGYVLACQTYPESDLIIEIPFDSRL 95
>pdb|2PIA|A Chain A, Phthalate Dioxygenase Reductase: A Modular Structure For
Electron Transfer From Pyridine Nucleotides To [2fe-2s]
Length = 321
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 69 FDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGF-V 127
F+ P + I++ D + +P SC +G C +C + SG D D DD EKG +
Sbjct: 249 FEIPANRSILEVLRDANVRVPSSCESGTCGSCKTALCSGEADHRDMVLRDD---EKGTQI 305
Query: 128 LTCVA 132
+ CV+
Sbjct: 306 MVCVS 310
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 35 SVSKAFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRA 94
S+ KA+G C A + YK+ + P GE P+ +I D ELP C+
Sbjct: 80 SLGKAWGTPCEXCPAVNTSEYKI--LCPGGEGFR---PNPITVILEDIDECQELPGLCQG 134
Query: 95 GAC 97
G C
Sbjct: 135 GKC 137
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 35 SVSKAFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRA 94
S+ KA+G C A + YK+ + P GE P+ +I D ELP C+
Sbjct: 80 SLGKAWGTPCEMCPAVNTSEYKI--LCPGGEGFR---PNPITVILEDIDECQELPGLCQG 134
Query: 95 GAC 97
G C
Sbjct: 135 GKC 137
>pdb|1QLB|B Chain B, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|E Chain E, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1E7P|B Chain B, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|E Chain E, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|H Chain H, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|K Chain K, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS3|B Chain B, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS3|E Chain E, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|B Chain B, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|E Chain E, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
Length = 239
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 77 IIDSAEDTGMELPYSCRAGACSTCAGQMVSG 107
+I D + + CRAG C +C G M++G
Sbjct: 42 MIRETYDPDLNFDFVCRAGICGSC-GMMING 71
>pdb|2BS2|B Chain B, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS2|E Chain E, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 241
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 77 IIDSAEDTGMELPYSCRAGACSTCAGQMVSG 107
+I D + + CRAG C +C G M++G
Sbjct: 42 MIRETYDPDLNFDFVCRAGICGSC-GMMING 71
>pdb|1I7H|A Chain A, Crystal Sturcuture Of Fdx
pdb|1I7H|B Chain B, Crystal Sturcuture Of Fdx
pdb|1I7H|C Chain C, Crystal Sturcuture Of Fdx
Length = 111
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 77 IIDSAEDTGMELPYSC-RAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVL 128
I+D+A G+E+ ++C ++ AC+TC + G + S +D ++K + L
Sbjct: 27 ILDAALRNGIEIEHACEKSCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGL 79
>pdb|3P8C|A Chain A, Structure And Control Of The Actin Regulatory Wave Complex
Length = 1253
Score = 26.6 bits (57), Expect = 5.6, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 45 SSFKASAMAVYKVKLIGPNGEENEFDAPDDA 75
S + A M VY KL+ P + + D PD A
Sbjct: 402 SQWSAHVMEVYSWKLVHPTDKYSNKDCPDSA 432
>pdb|1E9M|A Chain A, Ferredoxin Vi From Rhodobacter Capsulatus
pdb|1UWM|A Chain A, Reduced Ferredoxin 6 From Rhodobacter Capsulatus
Length = 106
Score = 25.8 bits (55), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTGME-LPYSC-RAGACSTCAGQMVSGSVDQ 111
K+ I NG +E +A ++++A D G+ + C A ACSTC + VD+
Sbjct: 2 KIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDK 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,178,956
Number of Sequences: 62578
Number of extensions: 148031
Number of successful extensions: 401
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 356
Number of HSP's gapped (non-prelim): 43
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)