Query 031979
Match_columns 149
No_of_seqs 283 out of 1766
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:58:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10684 HCP oxidoreductase, N 100.0 8.5E-29 1.8E-33 204.0 12.8 121 18-141 202-332 (332)
2 TIGR02160 PA_CoA_Oxy5 phenylac 100.0 4.2E-28 9.1E-33 200.8 13.4 124 18-142 206-351 (352)
3 CHL00134 petF ferredoxin; Vali 99.9 9.2E-27 2E-31 162.5 11.6 97 52-149 1-99 (99)
4 TIGR02008 fdx_plant ferredoxin 99.9 1E-26 2.2E-31 161.6 11.6 96 54-149 2-97 (97)
5 PLN03136 Ferredoxin; Provision 99.9 1.1E-24 2.4E-29 161.8 11.3 98 51-149 51-148 (148)
6 PTZ00038 ferredoxin; Provision 99.9 7.5E-24 1.6E-28 162.8 10.8 95 54-149 95-189 (191)
7 PRK10713 2Fe-2S ferredoxin Yfa 99.9 1.9E-23 4.1E-28 141.6 9.4 83 54-142 1-84 (84)
8 PRK07609 CDP-6-deoxy-delta-3,4 99.8 2.5E-20 5.3E-25 153.7 11.0 90 55-147 3-94 (339)
9 cd00207 fer2 2Fe-2S iron-sulfu 99.8 7.1E-20 1.5E-24 122.4 8.9 83 58-141 2-84 (84)
10 COG0633 Fdx Ferredoxin [Energy 99.8 5.8E-20 1.2E-24 128.9 8.2 92 56-147 3-100 (102)
11 PLN02593 adrenodoxin-like ferr 99.8 6.2E-20 1.3E-24 131.7 7.7 91 56-146 2-104 (117)
12 PRK11872 antC anthranilate dio 99.8 1.7E-19 3.6E-24 149.5 11.3 91 55-145 3-95 (340)
13 PRK05713 hypothetical protein; 99.8 2.5E-19 5.5E-24 146.7 10.1 80 62-143 6-85 (312)
14 TIGR02007 fdx_isc ferredoxin, 99.8 5E-19 1.1E-23 125.6 9.1 84 61-146 12-103 (110)
15 TIGR01941 nqrF NADH:ubiquinone 99.8 1.7E-18 3.7E-23 146.5 10.0 94 52-145 27-123 (405)
16 PTZ00490 Ferredoxin superfamil 99.8 2.3E-18 5E-23 127.3 8.6 94 53-146 34-139 (143)
17 PF00111 Fer2: 2Fe-2S iron-sul 99.7 3.1E-18 6.7E-23 113.5 6.6 73 62-135 3-78 (78)
18 PRK05464 Na(+)-translocating N 99.7 4E-17 8.7E-22 138.3 10.4 89 54-144 35-126 (409)
19 COG2871 NqrF Na+-transporting 99.6 1.2E-15 2.5E-20 123.9 6.7 90 54-145 36-128 (410)
20 COG3894 Uncharacterized metal- 99.5 1.3E-14 2.9E-19 124.3 4.9 90 55-148 2-92 (614)
21 KOG3309 Ferredoxin [Energy pro 99.2 3.5E-11 7.5E-16 89.1 6.3 92 54-145 43-145 (159)
22 PRK07569 bidirectional hydroge 99.2 5E-11 1.1E-15 94.5 6.5 71 56-145 3-79 (234)
23 PF13510 Fer2_4: 2Fe-2S iron-s 99.1 4.3E-11 9.2E-16 80.7 4.1 69 56-144 3-81 (82)
24 PRK08166 NADH dehydrogenase su 99.0 7.1E-10 1.5E-14 101.7 6.3 75 57-145 2-82 (847)
25 PTZ00305 NADH:ubiquinone oxido 98.9 5.1E-09 1.1E-13 85.4 6.7 73 54-145 66-145 (297)
26 COG1018 Hmp Flavodoxin reducta 98.8 4.1E-09 8.9E-14 85.2 5.1 66 14-82 191-266 (266)
27 PRK06259 succinate dehydrogena 98.7 3.7E-08 7.9E-13 85.3 7.9 60 67-144 23-88 (486)
28 PRK12814 putative NADPH-depend 98.6 1.1E-07 2.5E-12 85.1 6.4 71 56-145 3-79 (652)
29 PRK09130 NADH dehydrogenase su 98.5 2.3E-07 5.1E-12 83.7 6.4 71 57-145 2-78 (687)
30 COG1034 NuoG NADH dehydrogenas 98.5 2.8E-07 6E-12 83.1 5.8 70 57-145 2-77 (693)
31 TIGR01973 NuoG NADH-quinone ox 98.3 7.3E-07 1.6E-11 79.2 5.8 67 62-145 3-75 (603)
32 PRK07860 NADH dehydrogenase su 98.3 1.3E-06 2.7E-11 80.2 6.4 69 56-143 4-78 (797)
33 PRK08493 NADH dehydrogenase su 98.3 1.4E-06 2.9E-11 80.1 6.3 68 57-145 2-75 (819)
34 PRK09129 NADH dehydrogenase su 98.3 1.2E-06 2.6E-11 79.9 5.6 70 57-145 2-77 (776)
35 PF13085 Fer2_3: 2Fe-2S iron-s 98.3 9.8E-07 2.1E-11 62.7 3.9 52 67-136 21-78 (110)
36 PRK13552 frdB fumarate reducta 98.2 1.6E-06 3.6E-11 69.1 5.0 41 67-108 26-72 (239)
37 PRK08640 sdhB succinate dehydr 98.2 1.9E-06 4.2E-11 69.1 5.3 41 67-108 25-78 (249)
38 PRK09908 xanthine dehydrogenas 98.2 4.6E-06 1E-10 62.8 6.0 52 55-108 7-59 (159)
39 PRK11433 aldehyde oxidoreducta 98.2 4.1E-06 9E-11 65.9 5.6 54 54-109 49-104 (217)
40 PRK12386 fumarate reductase ir 98.1 5.3E-06 1.1E-10 66.8 6.2 42 66-108 21-68 (251)
41 PRK08345 cytochrome-c3 hydroge 98.1 2.5E-06 5.5E-11 69.3 3.0 55 18-107 211-266 (289)
42 PRK12577 succinate dehydrogena 98.1 8.3E-06 1.8E-10 67.9 6.0 42 66-108 20-67 (329)
43 TIGR03193 4hydroxCoAred 4-hydr 98.0 1.1E-05 2.4E-10 60.1 5.4 50 57-108 2-53 (148)
44 cd06220 DHOD_e_trans_like2 FAD 98.0 1.1E-05 2.3E-10 63.4 5.3 51 17-105 165-216 (233)
45 PRK12385 fumarate reductase ir 98.0 1E-05 2.2E-10 64.7 4.5 41 67-108 27-73 (244)
46 PRK07570 succinate dehydrogena 98.0 7.5E-06 1.6E-10 65.8 3.7 42 67-109 22-74 (250)
47 PRK12576 succinate dehydrogena 97.9 4.1E-05 8.8E-10 62.5 7.5 42 66-108 26-73 (279)
48 PRK08221 anaerobic sulfite red 97.9 1E-05 2.2E-10 64.9 3.8 31 18-48 191-222 (263)
49 TIGR02911 sulfite_red_B sulfit 97.9 1.6E-05 3.5E-10 63.7 4.3 32 17-48 188-220 (261)
50 COG3383 Uncharacterized anaero 97.8 3.8E-05 8.3E-10 69.6 6.5 66 57-143 6-77 (978)
51 PLN00129 succinate dehydrogena 97.8 2E-05 4.4E-10 64.2 3.8 40 68-108 65-111 (276)
52 PRK00054 dihydroorotate dehydr 97.8 4.8E-05 1E-09 60.3 5.4 51 18-106 180-231 (250)
53 TIGR03198 pucE xanthine dehydr 97.7 7.2E-05 1.6E-09 55.9 5.6 50 57-108 4-55 (151)
54 PRK12575 succinate dehydrogena 97.7 2.9E-05 6.3E-10 61.9 3.5 51 67-135 23-81 (235)
55 TIGR00384 dhsB succinate dehyd 97.7 3.8E-05 8.3E-10 60.3 3.6 41 67-108 17-63 (220)
56 COG0479 FrdB Succinate dehydro 97.7 3.2E-05 7E-10 61.6 3.1 42 67-109 22-69 (234)
57 cd06188 NADH_quinone_reductase 97.6 4.9E-05 1.1E-09 61.3 3.0 35 17-51 247-282 (283)
58 cd06218 DHOD_e_trans FAD/NAD b 97.5 0.00025 5.5E-09 56.2 6.5 51 18-106 179-230 (246)
59 COG2080 CoxS Aerobic-type carb 97.5 0.00024 5.1E-09 53.3 5.7 52 56-109 3-56 (156)
60 cd06196 FNR_like_1 Ferredoxin 97.5 7.7E-05 1.7E-09 57.5 3.1 35 16-50 183-218 (218)
61 cd06189 flavin_oxioreductase N 97.5 8.2E-05 1.8E-09 57.7 3.1 34 17-50 188-222 (224)
62 PRK08051 fre FMN reductase; Va 97.5 7.6E-05 1.7E-09 58.5 2.8 34 18-51 193-228 (232)
63 cd06195 FNR1 Ferredoxin-NADP+ 97.5 0.00012 2.6E-09 57.4 3.8 33 18-50 200-239 (241)
64 cd06194 FNR_N-term_Iron_sulfur 97.5 0.0001 2.3E-09 56.9 3.3 36 16-51 184-220 (222)
65 PRK05950 sdhB succinate dehydr 97.5 0.00014 3.1E-09 57.5 4.1 42 67-109 20-68 (232)
66 cd06211 phenol_2-monooxygenase 97.5 9.8E-05 2.1E-09 57.9 3.1 33 18-50 203-236 (238)
67 cd06212 monooxygenase_like The 97.5 9.8E-05 2.1E-09 57.5 3.1 34 18-51 196-230 (232)
68 cd06198 FNR_like_3 NAD(P) bind 97.4 0.00012 2.5E-09 56.5 3.4 36 16-51 178-214 (216)
69 cd06217 FNR_iron_sulfur_bindin 97.4 0.00011 2.4E-09 57.0 3.2 34 17-50 199-233 (235)
70 cd06219 DHOD_e_trans_like1 FAD 97.4 0.00037 8.1E-09 55.2 6.1 48 19-104 180-228 (248)
71 cd06191 FNR_iron_sulfur_bindin 97.4 0.00012 2.6E-09 57.0 2.9 32 19-50 197-229 (231)
72 cd00322 FNR_like Ferredoxin re 97.4 0.00013 2.9E-09 55.7 3.1 35 16-50 188-223 (223)
73 PRK05713 hypothetical protein; 97.4 0.00012 2.6E-09 60.0 2.8 34 18-51 273-307 (312)
74 cd06215 FNR_iron_sulfur_bindin 97.4 0.00014 3.1E-09 56.3 3.0 33 18-50 196-229 (231)
75 PRK05464 Na(+)-translocating N 97.4 0.00014 3E-09 61.9 3.1 35 17-51 371-406 (409)
76 cd06209 BenDO_FAD_NAD Benzoate 97.4 0.00015 3.2E-09 56.3 3.0 36 16-51 190-226 (228)
77 PRK11872 antC anthranilate dio 97.3 0.00017 3.7E-09 59.9 3.2 33 19-51 301-334 (340)
78 cd06184 flavohem_like_fad_nad_ 97.3 0.00016 3.4E-09 56.8 2.8 37 15-51 205-242 (247)
79 cd06187 O2ase_reductase_like T 97.3 0.00021 4.6E-09 55.1 3.3 33 18-50 189-222 (224)
80 PRK13289 bifunctional nitric o 97.3 0.00017 3.6E-09 60.7 2.7 38 15-52 354-392 (399)
81 cd06185 PDR_like Phthalate dio 97.3 0.00028 6E-09 54.0 3.7 34 18-51 175-209 (211)
82 cd06210 MMO_FAD_NAD_binding Me 97.3 0.00022 4.8E-09 55.5 3.2 33 18-50 200-233 (236)
83 cd06213 oxygenase_e_transfer_s 97.3 0.00021 4.5E-09 55.6 2.9 34 17-50 191-225 (227)
84 TIGR01941 nqrF NADH:ubiquinone 97.2 0.00023 5E-09 60.5 3.0 34 18-51 368-402 (405)
85 PRK07609 CDP-6-deoxy-delta-3,4 97.2 0.00029 6.4E-09 58.1 2.9 34 18-51 297-331 (339)
86 TIGR02963 xanthine_xdhA xanthi 97.2 0.00053 1.1E-08 59.7 4.6 46 58-104 2-50 (467)
87 cd06192 DHOD_e_trans_like FAD/ 97.1 0.00089 1.9E-08 52.6 5.1 23 19-41 178-201 (243)
88 cd06183 cyt_b5_reduct_like Cyt 97.1 0.00039 8.4E-09 53.8 2.8 32 17-48 199-232 (234)
89 cd06216 FNR_iron_sulfur_bindin 97.1 0.0006 1.3E-08 53.5 3.8 32 18-50 209-241 (243)
90 cd06190 T4MO_e_transfer_like T 97.0 0.00066 1.4E-08 52.7 3.2 35 17-51 194-230 (232)
91 cd06214 PA_degradation_oxidore 96.9 0.00069 1.5E-08 52.8 2.9 34 17-50 204-238 (241)
92 PRK09800 putative hypoxanthine 96.9 0.0019 4.1E-08 60.8 5.8 52 56-109 2-55 (956)
93 cd06193 siderophore_interactin 96.9 0.00087 1.9E-08 52.6 3.1 34 17-50 196-231 (235)
94 PTZ00319 NADH-cytochrome B5 re 96.6 0.0015 3.2E-08 53.5 2.8 30 19-48 267-298 (300)
95 cd06221 sulfite_reductase_like 96.6 0.0016 3.4E-08 51.8 2.8 31 18-48 189-220 (253)
96 PRK12779 putative bifunctional 96.6 0.0041 8.9E-08 58.4 5.8 47 20-104 848-895 (944)
97 TIGR03311 Se_dep_Molyb_1 selen 96.5 0.0043 9.3E-08 57.7 5.3 45 62-109 5-51 (848)
98 PLN00192 aldehyde oxidase 96.5 0.0048 1E-07 59.9 5.8 48 56-104 5-55 (1344)
99 KOG2282 NADH-ubiquinone oxidor 96.4 0.0039 8.5E-08 54.8 4.3 50 54-106 30-85 (708)
100 TIGR03313 Se_sel_red_Mo probab 96.3 0.0065 1.4E-07 57.2 5.1 47 62-109 3-51 (951)
101 PRK12778 putative bifunctional 96.2 0.011 2.3E-07 54.1 6.1 24 20-43 182-206 (752)
102 TIGR02969 mam_aldehyde_ox alde 96.1 0.0071 1.5E-07 58.7 4.7 49 56-105 2-53 (1330)
103 PRK12775 putative trifunctiona 95.9 0.0091 2E-07 56.5 4.4 24 20-43 182-206 (1006)
104 PRK05802 hypothetical protein; 95.9 0.013 2.9E-07 48.5 4.8 20 20-39 255-275 (320)
105 PTZ00306 NADH-dependent fumara 95.8 0.0067 1.5E-07 58.1 3.0 33 17-49 1127-1160(1167)
106 PRK06222 ferredoxin-NADP(+) re 95.4 0.017 3.6E-07 46.8 3.4 25 19-43 181-206 (281)
107 COG4097 Predicted ferric reduc 95.2 0.015 3.1E-07 49.6 2.6 32 20-51 402-434 (438)
108 KOG3378 Globins and related he 94.8 0.029 6.4E-07 46.1 3.2 47 5-51 332-379 (385)
109 PLN02252 nitrate reductase [NA 94.4 0.032 6.9E-07 52.3 3.0 31 18-48 854-886 (888)
110 PRK10926 ferredoxin-NADP reduc 94.3 0.052 1.1E-06 43.0 3.7 29 18-47 205-235 (248)
111 COG2871 NqrF Na+-transporting 94.1 0.049 1.1E-06 45.2 3.1 35 14-48 369-404 (410)
112 PLN03115 ferredoxin--NADP(+) r 94.1 0.042 9E-07 46.6 2.8 24 17-40 317-341 (367)
113 KOG0534 NADH-cytochrome b-5 re 94.0 0.057 1.2E-06 44.4 3.4 28 19-46 253-282 (286)
114 cd06206 bifunctional_CYPOR The 93.8 0.035 7.5E-07 46.9 1.9 28 18-45 327-355 (384)
115 cd06208 CYPOR_like_FNR These f 93.7 0.049 1.1E-06 44.0 2.5 23 18-40 238-261 (286)
116 cd06182 CYPOR_like NADPH cytoc 93.4 0.074 1.6E-06 42.8 3.1 23 18-40 213-237 (267)
117 TIGR01372 soxA sarcosine oxida 93.4 0.27 5.9E-06 46.5 7.2 73 55-143 11-94 (985)
118 cd06200 SiR_like1 Cytochrome p 93.2 0.086 1.9E-06 41.7 3.1 21 19-39 202-224 (245)
119 PLN03116 ferredoxin--NADP+ red 93.2 0.084 1.8E-06 43.3 3.1 22 18-39 258-280 (307)
120 cd06201 SiR_like2 Cytochrome p 92.5 0.12 2.6E-06 41.9 3.1 22 18-39 244-266 (289)
121 KOG3049 Succinate dehydrogenas 92.5 0.14 3E-06 40.7 3.3 31 74-104 76-112 (288)
122 TIGR03224 benzo_boxA benzoyl-C 92.3 0.13 2.8E-06 44.0 3.2 24 18-41 362-386 (411)
123 cd06202 Nitric_oxide_synthase 92.1 0.14 2.9E-06 43.8 3.0 23 17-39 348-371 (406)
124 COG4630 XdhA Xanthine dehydrog 91.6 0.46 9.9E-06 40.8 5.5 50 54-104 6-58 (493)
125 cd06186 NOX_Duox_like_FAD_NADP 91.3 0.15 3.3E-06 38.7 2.2 28 22-49 179-207 (210)
126 cd06199 SiR Cytochrome p450- l 91.0 0.19 4E-06 42.2 2.7 22 18-39 306-329 (360)
127 cd06204 CYPOR NADPH cytochrome 90.8 0.2 4.4E-06 42.9 2.8 23 18-40 362-386 (416)
128 cd06207 CyPoR_like NADPH cytoc 90.6 0.16 3.4E-06 42.9 1.9 24 20-43 330-355 (382)
129 COG0543 UbiB 2-polyprenylpheno 90.3 0.32 7E-06 38.8 3.4 29 18-46 191-220 (252)
130 PRK06214 sulfite reductase; Pr 89.9 0.3 6.4E-06 43.4 3.2 22 18-39 476-499 (530)
131 cd06203 methionine_synthase_re 89.9 0.3 6.5E-06 41.5 3.0 22 18-39 344-367 (398)
132 KOG0430 Xanthine dehydrogenase 89.2 0.6 1.3E-05 44.8 4.7 44 62-105 7-53 (1257)
133 PLN02906 xanthine dehydrogenas 88.3 0.5 1.1E-05 46.3 3.7 32 74-105 1-33 (1319)
134 PRK10953 cysJ sulfite reductas 87.3 0.49 1.1E-05 42.6 2.8 22 18-39 546-569 (600)
135 cd01760 RBD Ubiquitin-like dom 87.2 1.1 2.4E-05 29.3 3.7 24 60-83 5-28 (72)
136 TIGR01931 cysJ sulfite reducta 85.0 0.75 1.6E-05 41.3 2.7 23 18-40 543-567 (597)
137 PTZ00274 cytochrome b5 reducta 84.9 0.57 1.2E-05 39.0 1.8 15 19-33 263-278 (325)
138 PF10418 DHODB_Fe-S_bind: Iron 82.9 0.76 1.6E-05 26.7 1.3 17 91-107 5-21 (40)
139 smart00455 RBD Raf-like Ras-bi 82.0 2.7 5.9E-05 27.2 3.8 23 61-83 6-28 (70)
140 cd06221 sulfite_reductase_like 79.8 1.4 3E-05 34.9 2.2 28 76-103 204-240 (253)
141 PLN02292 ferric-chelate reduct 78.2 1.8 3.9E-05 39.9 2.6 31 18-50 665-696 (702)
142 PRK05659 sulfur carrier protei 78.0 3.1 6.8E-05 25.9 3.1 25 62-88 5-29 (66)
143 PLN02631 ferric-chelate reduct 74.5 2.6 5.7E-05 38.8 2.7 30 19-50 663-693 (699)
144 PF02196 RBD: Raf-like Ras-bin 72.3 6.4 0.00014 25.4 3.5 24 61-84 7-30 (71)
145 KOG1158 NADP/FAD dependent oxi 72.3 2.5 5.5E-05 38.5 2.0 28 12-39 585-614 (645)
146 cd01816 Raf_RBD Ubiquitin doma 70.3 7 0.00015 25.8 3.3 41 61-106 6-46 (74)
147 PRK07440 hypothetical protein; 68.5 9.4 0.0002 24.5 3.6 31 56-89 4-34 (70)
148 COG0369 CysJ Sulfite reductase 68.5 4.4 9.5E-05 36.6 2.7 23 17-39 532-556 (587)
149 KOG0039 Ferric reductase, NADH 68.4 4.9 0.00011 36.6 3.0 24 20-43 610-634 (646)
150 PF03990 DUF348: Domain of unk 67.6 10 0.00022 21.9 3.4 31 57-89 2-32 (43)
151 PRK06222 ferredoxin-NADP(+) re 66.1 6.4 0.00014 31.7 3.0 28 77-104 196-229 (281)
152 cd01818 TIAM1_RBD Ubiquitin do 65.6 10 0.00022 25.2 3.3 32 61-92 6-41 (77)
153 PF02824 TGS: TGS domain; Int 64.0 9.2 0.0002 23.7 2.8 30 61-92 5-34 (60)
154 PRK05863 sulfur carrier protei 63.8 12 0.00026 23.5 3.4 26 62-89 5-30 (65)
155 PRK08364 sulfur carrier protei 62.1 23 0.0005 22.5 4.5 33 53-88 3-37 (70)
156 PF13670 PepSY_2: Peptidase pr 60.4 35 0.00075 22.2 5.3 45 30-74 31-75 (83)
157 cd01817 RGS12_RBD Ubiquitin do 59.7 17 0.00036 23.9 3.5 39 61-108 6-48 (73)
158 PRK06944 sulfur carrier protei 58.6 14 0.00029 22.8 2.9 24 62-87 5-28 (65)
159 PF03658 Ub-RnfH: RnfH family 57.2 6.2 0.00014 26.6 1.2 21 67-87 16-36 (84)
160 COG2104 ThiS Sulfur transfer p 56.3 25 0.00054 22.6 3.9 39 62-112 7-45 (68)
161 PRK14534 cysS cysteinyl-tRNA s 55.0 37 0.0008 30.0 6.0 13 16-28 18-30 (481)
162 PRK01777 hypothetical protein; 53.1 19 0.0004 24.7 3.1 23 67-89 19-41 (95)
163 PRK06083 sulfur carrier protei 51.5 33 0.00072 22.9 4.1 32 54-88 16-47 (84)
164 PRK08053 sulfur carrier protei 50.4 27 0.00058 21.8 3.3 25 62-88 5-29 (66)
165 PRK06437 hypothetical protein; 50.2 39 0.00084 21.3 4.1 26 63-88 9-34 (67)
166 PF10531 SLBB: SLBB domain; I 49.1 28 0.0006 21.2 3.2 24 67-90 12-35 (59)
167 PLN02844 oxidoreductase/ferric 48.8 16 0.00034 33.9 2.8 25 18-42 674-699 (722)
168 PF06953 ArsD: Arsenical resis 46.7 41 0.00088 24.2 4.1 61 24-88 17-102 (123)
169 cd01791 Ubl5 UBL5 ubiquitin-li 45.7 47 0.001 21.3 4.0 35 55-89 2-40 (73)
170 TIGR01683 thiS thiamine biosyn 43.7 35 0.00076 21.1 3.1 25 62-88 3-27 (64)
171 PF11470 TUG-UBL1: GLUT4 regul 43.6 31 0.00067 22.0 2.8 24 61-84 3-26 (65)
172 COG4747 ACT domain-containing 40.4 64 0.0014 23.5 4.3 67 22-92 8-101 (142)
173 COG4189 Predicted transcriptio 39.8 81 0.0017 25.7 5.2 65 54-121 78-145 (308)
174 COG3061 OapA Cell envelope opa 39.2 29 0.00063 27.7 2.6 27 63-89 156-182 (242)
175 cd00401 AdoHcyase S-adenosyl-L 39.2 15 0.00033 31.7 1.2 36 8-43 49-87 (413)
176 cd01787 GRB7_RA RA (RAS-associ 37.7 66 0.0014 21.7 3.8 28 56-83 4-31 (85)
177 cd01810 ISG15_repeat2 ISG15 ub 36.8 68 0.0015 20.2 3.7 29 59-87 3-35 (74)
178 cd01790 Herp_N Homocysteine-re 36.6 77 0.0017 20.9 4.0 29 55-83 2-32 (79)
179 PRK06567 putative bifunctional 35.8 15 0.00032 35.4 0.6 82 19-107 894-989 (1028)
180 PRK07696 sulfur carrier protei 35.8 57 0.0012 20.5 3.2 25 62-88 5-30 (67)
181 KOG4214 Myotrophin and similar 34.3 4 8.7E-05 28.7 -2.6 30 57-86 83-112 (117)
182 PF02662 FlpD: Methyl-viologen 34.0 40 0.00086 24.0 2.4 20 30-49 79-98 (124)
183 cd00565 ThiS ThiaminS ubiquiti 33.1 73 0.0016 19.6 3.3 25 62-88 4-28 (65)
184 PRK15431 ferrous iron transpor 33.1 51 0.0011 21.9 2.6 14 88-101 52-65 (78)
185 PF04225 OapA: Opacity-associa 32.9 44 0.00095 22.2 2.4 22 67-88 3-24 (85)
186 PF05014 Nuc_deoxyrib_tr: Nucl 32.0 44 0.00095 22.8 2.3 21 22-42 1-28 (113)
187 TIGR02899 spore_safA spore coa 31.6 31 0.00068 18.7 1.3 18 71-88 1-18 (44)
188 cd01804 midnolin_N Ubiquitin-l 31.2 1.1E+02 0.0023 19.7 4.0 26 55-80 2-27 (78)
189 cd00118 LysM Lysin domain, fou 30.9 44 0.00096 17.3 1.9 21 68-88 2-22 (46)
190 cd01802 AN1_N ubiquitin-like d 29.8 1.4E+02 0.0031 20.4 4.7 27 54-80 27-53 (103)
191 KOG3507 DNA-directed RNA polym 28.9 41 0.00089 21.3 1.5 15 15-29 13-27 (62)
192 PTZ00044 ubiquitin; Provisiona 28.5 1.2E+02 0.0025 18.9 3.8 25 56-80 2-26 (76)
193 PF08952 DUF1866: Domain of un 28.4 2.3E+02 0.0049 21.1 5.7 32 54-88 63-94 (146)
194 cd01805 RAD23_N Ubiquitin-like 28.3 1.2E+02 0.0025 18.9 3.8 25 56-80 2-26 (77)
195 PF01476 LysM: LysM domain; I 28.2 49 0.0011 18.2 1.8 19 70-88 2-20 (44)
196 cd01995 ExsB ExsB is a transcr 28.0 46 0.001 24.2 2.0 28 74-101 126-158 (169)
197 cd01807 GDX_N ubiquitin-like d 27.6 1.2E+02 0.0026 18.9 3.7 26 56-81 2-27 (74)
198 cd01794 DC_UbP_C dendritic cel 27.4 1.3E+02 0.0029 18.9 3.9 19 62-80 6-24 (70)
199 cd01803 Ubiquitin Ubiquitin. U 26.9 1.6E+02 0.0034 18.1 4.2 68 56-134 2-73 (76)
200 PF01406 tRNA-synt_1e: tRNA sy 26.6 24 0.00051 29.3 0.2 29 15-43 4-46 (300)
201 cd04882 ACT_Bt0572_2 C-termina 26.5 1.4E+02 0.0031 17.4 4.8 52 27-88 10-64 (65)
202 COG1586 SpeD S-adenosylmethion 26.2 68 0.0015 23.6 2.5 21 20-40 88-110 (136)
203 COG4070 Predicted peptidyl-pro 26.0 68 0.0015 28.0 2.8 27 62-90 6-32 (512)
204 PF09012 FeoC: FeoC like trans 25.7 27 0.00059 21.9 0.3 26 75-101 32-61 (69)
205 PF04954 SIP: Siderophore-inte 25.7 52 0.0011 22.9 1.8 33 17-49 78-112 (119)
206 cd01792 ISG15_repeat1 ISG15 ub 25.4 1.5E+02 0.0032 18.9 3.9 27 55-81 3-29 (80)
207 PRK01236 S-adenosylmethionine 24.6 74 0.0016 23.1 2.5 19 20-38 79-98 (131)
208 cd01809 Scythe_N Ubiquitin-lik 24.4 1.7E+02 0.0037 17.7 4.2 26 56-81 2-27 (72)
209 TIGR03330 SAM_DCase_Bsu S-aden 24.3 77 0.0017 22.2 2.5 9 20-28 77-85 (112)
210 KOG1159 NADP-dependent flavopr 23.7 73 0.0016 28.6 2.7 23 17-39 520-544 (574)
211 cd00672 CysRS_core catalytic c 23.3 56 0.0012 25.4 1.8 18 12-29 13-30 (213)
212 cd01668 TGS_RelA_SpoT TGS_RelA 23.2 99 0.0022 18.0 2.6 26 61-88 5-30 (60)
213 cd01806 Nedd8 Nebb8-like ubiq 22.9 1.9E+02 0.0042 17.7 4.2 26 56-81 2-27 (76)
214 cd01763 Sumo Small ubiquitin-r 22.5 2.3E+02 0.005 18.4 4.6 35 54-88 11-49 (87)
215 PRK00969 hypothetical protein; 22.5 1.3E+02 0.0027 27.0 3.9 29 62-92 6-34 (508)
216 cd04883 ACT_AcuB C-terminal AC 22.1 1.9E+02 0.0042 17.3 5.2 53 30-90 15-70 (72)
217 PRK05476 S-adenosyl-L-homocyst 22.0 43 0.00094 29.1 1.0 36 8-43 61-99 (425)
218 PRK09590 celB cellobiose phosp 21.9 1.1E+02 0.0024 21.1 2.9 29 18-46 49-80 (104)
219 PRK05417 glutathione-dependent 21.8 69 0.0015 24.8 2.0 28 17-44 132-166 (191)
220 PRK11106 queuosine biosynthesi 21.7 72 0.0016 25.3 2.1 28 75-102 166-202 (231)
221 PRK02770 S-adenosylmethionine 21.7 96 0.0021 22.8 2.6 16 14-29 82-100 (139)
222 cd01813 UBP_N UBP ubiquitin pr 21.5 1.2E+02 0.0027 19.3 2.9 24 56-80 2-25 (74)
223 PRK00458 S-adenosylmethionine 21.1 96 0.0021 22.3 2.5 10 20-29 90-99 (127)
224 PRK14536 cysS cysteinyl-tRNA s 21.1 59 0.0013 28.8 1.6 11 18-28 22-32 (490)
225 PRK01706 S-adenosylmethionine 20.9 95 0.0021 22.2 2.4 9 20-28 80-88 (123)
226 cd08490 PBP2_NikA_DppA_OppA_li 20.5 1.4E+02 0.0031 25.1 3.8 58 30-89 294-353 (470)
227 smart00257 LysM Lysin motif. 20.2 99 0.0021 15.6 2.0 20 69-88 2-21 (44)
228 PF02844 GARS_N: Phosphoribosy 20.2 81 0.0018 21.8 1.9 26 18-43 61-88 (100)
No 1
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.96 E-value=8.5e-29 Score=203.99 Aligned_cols=121 Identities=24% Similarity=0.447 Sum_probs=107.8
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC---------CceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCC
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA---------MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGME 87 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~---------~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~ 87 (149)
.++++|+|||.+ |++++++|+++|+++++||.|. ...++|++. .+| +++++++|+|||++|+++||+
T Consensus 202 ~~~~vyiCGP~~m~~~v~~~l~~~Gv~~~~i~~E~F~~~~~~~~~~~~~v~~~-~~~--~~~~~~~~~~lL~~~~~~gi~ 278 (332)
T PRK10684 202 ASRTVMTCGPAPYMDWVEQEVKALGVTADRFFKEKFFTPVAEAATSGLTFTKL-QPA--REFYAPVGTTLLEALESNKVP 278 (332)
T ss_pred cCCEEEEECCHHHHHHHHHHHHHcCCCHHHeEeeccCCCCCCcCCCceEEEEe-cCC--EEEEeCCCChHHHHHHHcCCC
Confidence 357899999999 6999999999999999987652 224677774 566 889999999999999999999
Q ss_pred CCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEEcCCeEEE
Q 031979 88 LPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIY 141 (149)
Q Consensus 88 i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~~~d~~I~ 141 (149)
++++|+.|.||+|++++++|++.+.....|+++++++|++|+|+++|.+|++|+
T Consensus 279 ~~~~C~~G~Cg~C~~~~~~G~v~~~~~~~l~~~~~~~g~~l~C~~~~~~d~~i~ 332 (332)
T PRK10684 279 VVAACRAGVCGCCKTKVVSGEYTVSSTMTLTPAEIAQGYVLACSCHPQGDLVLA 332 (332)
T ss_pred ccCCCCCcCCCCCEEEEecCcccccccccCCHHHHhCCcEEEeeCEECCCeEEC
Confidence 999999999999999999999998766789999999999999999999998873
No 2
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.95 E-value=4.2e-28 Score=200.84 Aligned_cols=124 Identities=26% Similarity=0.507 Sum_probs=106.3
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC-------------------CceeEEEEEcCCCCeEE-EEcCCCch
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA-------------------MAVYKVKLIGPNGEENE-FDAPDDAY 76 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~-------------------~~~~~V~~~~~~G~~~~-~~v~~g~t 76 (149)
...++|+|||.+ |+++++.|.++|++++++|+|. ...++|+|. .+|.... +.+++|+|
T Consensus 206 ~~~~vyiCGp~~m~~~v~~~L~~~Gv~~~~i~~E~F~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~s 284 (352)
T TIGR02160 206 RADEWFLCGPQAMVDDAEQALTGLGVPAGRVHLELFYTDDEPGREVRHEVSGPEGDVSKVTVT-LDGRSTETSSLSRDES 284 (352)
T ss_pred cCCEEEEECCHHHHHHHHHHHHHcCCCHHHEEEEeccCCCCCcccccccccccCCCceEEEEE-ECCceEEEEecCCCCc
Confidence 457899999999 6999999999999998865431 124678885 6774443 57899999
Q ss_pred HHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEEcCC-eEEEe
Q 031979 77 IIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSD-CVIYT 142 (149)
Q Consensus 77 LLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~~~d-~~I~~ 142 (149)
||++++++||+++++|++|.||+|++++++|++.+.+...|+++++++|++|+||++|.+| ++|++
T Consensus 285 lL~~~~~~gi~~~~~C~~G~Cg~C~~~~~~G~v~~~~~~~l~~~~~~~g~~l~C~~~~~~~~~~~~~ 351 (352)
T TIGR02160 285 VLDAALRARPDLPFACKGGVCGTCRAKVLEGKVDMERNYALEPDEVDAGYVLTCQAYPLSDKLVVDY 351 (352)
T ss_pred HHHHHHHcCCCCcCCCCCccCCCCEEEEeccccccccccCCCHHHHhCCcEEEeeEEECCCcEEEec
Confidence 9999999999999999999999999999999999987777998888999999999999987 77753
No 3
>CHL00134 petF ferredoxin; Validated
Probab=99.94 E-value=9.2e-27 Score=162.50 Aligned_cols=97 Identities=68% Similarity=1.215 Sum_probs=88.8
Q ss_pred CceeEEEEEcC--CCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEe
Q 031979 52 MAVYKVKLIGP--NGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLT 129 (149)
Q Consensus 52 ~~~~~V~~~~~--~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~La 129 (149)
|++++|+|. . +|..++|++++|+|||++|+++||+++++|++|.||+|++++++|++++.+...|+++++++|++|+
T Consensus 1 ~~~~~v~~~-~~~~~~~~~~~~~~~~tLL~a~~~~Gi~i~~~C~~G~Cg~C~v~v~~G~v~~~~~~~l~~~e~~~g~~L~ 79 (99)
T CHL00134 1 MATYKVTLL-SEEEGIDVTIDCPDDVYILDAAEEQGIDLPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDDQLEAGFVLT 79 (99)
T ss_pred CCeEEEEEE-ecCCCCeEEEEECCCCcHHHHHHHcCCCCCcCCCCccCCCCEEEEEeCccccCcccCCCHHHHhCCeEEE
Confidence 556888884 4 6656789999999999999999999999999999999999999999998776678988889999999
Q ss_pred eeeEEcCCeEEEecCCcCCC
Q 031979 130 CVAYPTSDCVIYTHKESELY 149 (149)
Q Consensus 130 Cq~~~~~d~~I~~~~~~~~~ 149 (149)
|+++|.+|++|++|.++++|
T Consensus 80 C~~~~~~d~~i~~~~~~~~~ 99 (99)
T CHL00134 80 CVAYPTSDCTILTHQEEELY 99 (99)
T ss_pred eeCEECCCeEEEeccccccC
Confidence 99999999999999999987
No 4
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=99.94 E-value=1e-26 Score=161.60 Aligned_cols=96 Identities=68% Similarity=1.236 Sum_probs=88.5
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeE
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAY 133 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~ 133 (149)
.++|+|..++|..+++.+++|+|||++++++||+++++|++|.||+|+++|++|.+++.+...|+++++++|++|+||++
T Consensus 2 ~~~v~~~~~~~~~~~~~~~~g~tLLda~~~~Gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~g~~LaC~~~ 81 (97)
T TIGR02008 2 TYKVTLVNPDGGEETIECPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQSDQSFLDDDQMEAGYVLTCVAY 81 (97)
T ss_pred eEEEEEEECCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCccCCCCceEEEeCcEecCccCCCCHHHHhCCeEEEeeCE
Confidence 46788855677778999999999999999999999999999999999999999999887666688888999999999999
Q ss_pred EcCCeEEEecCCcCCC
Q 031979 134 PTSDCVIYTHKESELY 149 (149)
Q Consensus 134 ~~~d~~I~~~~~~~~~ 149 (149)
+.+|++|++++++++|
T Consensus 82 ~~~di~v~~~~~~~~~ 97 (97)
T TIGR02008 82 PTSDCTIETHKEEDLY 97 (97)
T ss_pred ECCCeEEEeccccccC
Confidence 9999999999999988
No 5
>PLN03136 Ferredoxin; Provisional
Probab=99.92 E-value=1.1e-24 Score=161.79 Aligned_cols=98 Identities=64% Similarity=1.155 Sum_probs=88.8
Q ss_pred CCceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEee
Q 031979 51 AMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTC 130 (149)
Q Consensus 51 ~~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaC 130 (149)
.|..++|+|..++| .++|++++|+||||+++++||++||+|+.|.||+|++++++|.+++.+...|++++.++||+|+|
T Consensus 51 ~m~~~~V~l~~~~~-~~~~~~~~g~tILdAa~~~Gi~lp~sCr~G~CGtC~~~l~~G~V~~~~~~~L~~~e~~~G~~LaC 129 (148)
T PLN03136 51 AMATYKVKFITPEG-EQEVECEEDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQISEGYVLTC 129 (148)
T ss_pred eeeeEEEEEecCCC-cEEEEeCCCCcHHHHHHHcCCCCCcCCCCccCCCCEEEEecCcCccCcccCCCHHHhcCCEEEEe
Confidence 45678899853443 47999999999999999999999999999999999999999999988777899999999999999
Q ss_pred eeEEcCCeEEEecCCcCCC
Q 031979 131 VAYPTSDCVIYTHKESELY 149 (149)
Q Consensus 131 q~~~~~d~~I~~~~~~~~~ 149 (149)
|++|.+|++|++++++++.
T Consensus 130 ~a~p~sD~~Ie~~~e~~l~ 148 (148)
T PLN03136 130 VAYPTSDVVIETHKEEAIM 148 (148)
T ss_pred EeEECCCcEEecCChhhcC
Confidence 9999999999999999873
No 6
>PTZ00038 ferredoxin; Provisional
Probab=99.91 E-value=7.5e-24 Score=162.84 Aligned_cols=95 Identities=53% Similarity=1.043 Sum_probs=86.8
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeE
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAY 133 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~ 133 (149)
.++|+|..++| .+++++++|+|||++|+++||++|++|+.|.||+|++++++|++++.+...|+++++++|++|+||++
T Consensus 95 ~~~Vt~~~~~g-~~~~~v~~geTILdAae~aGI~lp~sCr~G~CGtCkvrV~~GeV~~~e~~~Ls~ee~~~G~~LaCqa~ 173 (191)
T PTZ00038 95 FYNITLQTPDG-EKVIECDEDEYILDAAERQGVELPYSCRGGSCSTCAAKLLEGEVDNEDQSYLDDEQLKKGYCLLCTCY 173 (191)
T ss_pred eEEEEEEeCCC-cEEEEeCCCCcHHHHHHHcCCCCCcCCCCccCCCCEeEEeecccccCccccCCHHHhcCCEEEEeeCE
Confidence 57888843544 38999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred EcCCeEEEecCCcCCC
Q 031979 134 PTSDCVIYTHKESELY 149 (149)
Q Consensus 134 ~~~d~~I~~~~~~~~~ 149 (149)
+.+|++|+++++++++
T Consensus 174 p~sDi~Ie~p~e~~~~ 189 (191)
T PTZ00038 174 PKSDCTIETHKEDELH 189 (191)
T ss_pred ECCCeEEecCChHHhc
Confidence 9999999999998764
No 7
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=99.90 E-value=1.9e-23 Score=141.63 Aligned_cols=83 Identities=24% Similarity=0.476 Sum_probs=71.5
Q ss_pred eeEEEEEcCCCCeEEEEcCC-CchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeee
Q 031979 54 VYKVKLIGPNGEENEFDAPD-DAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVA 132 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~-g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~ 132 (149)
|++|+|. .+| ++|++++ |+|||++++++|+++||+|++|.||+|++++++|++++.+.. ..+.++|++|+|++
T Consensus 1 ~~~v~~~-~~~--~~~~~~~~~~tlL~a~~~~gi~~p~~Cr~G~Cg~C~~~~~sG~v~~~~~~---~~~~~~g~~L~C~~ 74 (84)
T PRK10713 1 MARVTLR-ITG--TQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEP---LAFIQPGEILPCCC 74 (84)
T ss_pred CCEEEEE-eCC--cEEEecCCCCcHHHHHHHcCCCCCCCCCCeECCCCEeEEEeCeEecCCCc---cchhhCCEEEEeeC
Confidence 4678884 677 7899986 599999999999999999999999999999999999875442 23467899999999
Q ss_pred EEcCCeEEEe
Q 031979 133 YPTSDCVIYT 142 (149)
Q Consensus 133 ~~~~d~~I~~ 142 (149)
+|.+|++|++
T Consensus 75 ~p~sd~~ie~ 84 (84)
T PRK10713 75 RAKGDIEIEM 84 (84)
T ss_pred EECCCEEEeC
Confidence 9999999874
No 8
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.83 E-value=2.5e-20 Score=153.75 Aligned_cols=90 Identities=38% Similarity=0.747 Sum_probs=81.6
Q ss_pred eEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCC--CCCCCChhhccCCeEEeeee
Q 031979 55 YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS--DGSFLDDKQMEKGFVLTCVA 132 (149)
Q Consensus 55 ~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~--~~~~L~~~~~~~g~~LaCq~ 132 (149)
++|+|. ++| +++++++|+|||++++++||+++++|+.|.||+|++++++|++++. +...|++++.++|++|+||+
T Consensus 3 ~~v~~~-~~~--~~~~~~~g~tlL~a~~~~gi~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~ 79 (339)
T PRK07609 3 FQVTLQ-PSG--RQFTAEPDETILDAALRQGIHLPYGCKNGACGSCKGRLLEGEVEQGPHQASALSGEERAAGEALTCCA 79 (339)
T ss_pred EEEEEe-cCC--eEEEeCCCCcHHHHHHHcCCCCCCCCCCeECCCCEEEEEECcEecccccccCCCHHHHhCCcEEEeeC
Confidence 578884 677 8999999999999999999999999999999999999999999875 55678888889999999999
Q ss_pred EEcCCeEEEecCCcC
Q 031979 133 YPTSDCVIYTHKESE 147 (149)
Q Consensus 133 ~~~~d~~I~~~~~~~ 147 (149)
++.+|++|+++..++
T Consensus 80 ~~~~d~~i~~~~~~~ 94 (339)
T PRK07609 80 KPLSDLVLEAREVPA 94 (339)
T ss_pred EECCCEEEEeccccc
Confidence 999999999987654
No 9
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=99.82 E-value=7.1e-20 Score=122.38 Aligned_cols=83 Identities=42% Similarity=0.798 Sum_probs=72.8
Q ss_pred EEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEEcCC
Q 031979 58 KLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSD 137 (149)
Q Consensus 58 ~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~~~d 137 (149)
+|. .+|..+++++++|+|||++++++|++++++|+.|.||+|+++|.+|.+.+.+...+...+..+++||+||+++.+|
T Consensus 2 ~~~-~~~~~~~~~~~~g~~ll~al~~~g~~~~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~~~~~ 80 (84)
T cd00207 2 TIN-VPGSGVEVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVTDG 80 (84)
T ss_pred EEe-cCCCCEEEEECCCCcHHHHHHHcCCCcccCCCCcCCcCCEEEEeeCccccCcccCCCHHHHhCCeEEEEeCeeCCC
Confidence 443 3344589999999999999999999999999999999999999999998876666777777889999999999999
Q ss_pred eEEE
Q 031979 138 CVIY 141 (149)
Q Consensus 138 ~~I~ 141 (149)
++|+
T Consensus 81 i~v~ 84 (84)
T cd00207 81 LVIE 84 (84)
T ss_pred cEEC
Confidence 9874
No 10
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=99.82 E-value=5.8e-20 Score=128.86 Aligned_cols=92 Identities=27% Similarity=0.540 Sum_probs=69.6
Q ss_pred EEEEEcCCCC-eEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeC--cccCCCC---CCCChhhccCCeEEe
Q 031979 56 KVKLIGPNGE-ENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSG--SVDQSDG---SFLDDKQMEKGFVLT 129 (149)
Q Consensus 56 ~V~~~~~~G~-~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G--~v~~~~~---~~L~~~~~~~g~~La 129 (149)
++.++..++. ...+.++.|+|||++|+++||+++|+||.|.||+|+|+|++| .+.+.+. .+|.+.....++||+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~g~tiLe~a~~~gi~i~~~C~~g~C~TC~v~v~~G~~~v~~~~~~e~~~l~~~~~~~~~rL~ 82 (102)
T COG0633 3 KIAFVTIDGEGDVTEAVNEGETLLEAAERNGIPIEYACRGGACGTCRVKVLEGFDEVSPPEESEEDLLDAAGLEGNSRLS 82 (102)
T ss_pred ceEEEeccCCcceEEeccCCcHHHHHHHHCCCcceecCCCCccCccEEEEecCcccCCCcchHHHHHHHhhccCCCcEEe
Confidence 3444334442 245555669999999999999999999999999999999999 6655432 344434566779999
Q ss_pred eeeEEcCCeEEEecCCcC
Q 031979 130 CVAYPTSDCVIYTHKESE 147 (149)
Q Consensus 130 Cq~~~~~d~~I~~~~~~~ 147 (149)
||+++.+|+.|++-...+
T Consensus 83 Cq~~~~~d~~i~~~~~~~ 100 (102)
T COG0633 83 CQCRVKGDLDIEVVEEPE 100 (102)
T ss_pred eeeEECCCcceEEEeccC
Confidence 999999999877655544
No 11
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=99.81 E-value=6.2e-20 Score=131.66 Aligned_cols=91 Identities=22% Similarity=0.392 Sum_probs=75.0
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC-CcccCCcEEEEeeCccc-C------CCCCCCC-hhhccCCe
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR-AGACSTCAGQMVSGSVD-Q------SDGSFLD-DKQMEKGF 126 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~-~G~CGtC~v~v~~G~v~-~------~~~~~L~-~~~~~~g~ 126 (149)
+|+|+.++|+.+++++++|+|||++++++|+++++.|+ .|.||+|+|+|+++... . .|...|+ ..+..+++
T Consensus 2 ~V~fi~~~G~~~~v~~~~G~tLl~a~~~~gi~i~~~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E~~~L~~~~~~~~~s 81 (117)
T PLN02593 2 SVTFVDKDGEERTVKAPVGMSLLEAAHENDIELEGACEGSLACSTCHVIVMDEKVYNKLPEPTDEENDMLDLAFGLTETS 81 (117)
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCcceeCCCEEEEecCccccCCCCCChHHHHHHhcccCCCCCe
Confidence 68887788988899999999999999999999999999 69999999999654322 1 1234555 34567899
Q ss_pred EEeeeeEEcC---CeEEEecCCc
Q 031979 127 VLTCVAYPTS---DCVIYTHKES 146 (149)
Q Consensus 127 ~LaCq~~~~~---d~~I~~~~~~ 146 (149)
||+||+.+.+ |++|++|+++
T Consensus 82 RLaCQ~~v~~~~~~~~v~ip~~~ 104 (117)
T PLN02593 82 RLGCQVIAKPELDGMRLALPAAT 104 (117)
T ss_pred EecceeEeecCCCCEEEEcCchh
Confidence 9999999984 6999999875
No 12
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.81 E-value=1.7e-19 Score=149.48 Aligned_cols=91 Identities=31% Similarity=0.549 Sum_probs=78.6
Q ss_pred eEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccC--CCCCCCChhhccCCeEEeeee
Q 031979 55 YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ--SDGSFLDDKQMEKGFVLTCVA 132 (149)
Q Consensus 55 ~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~--~~~~~L~~~~~~~g~~LaCq~ 132 (149)
++|++...+|+...+++++|+|||++++++|+.++++|+.|.||+|++++++|.++. .+...|++++.++|++|+||+
T Consensus 3 ~~v~~~~~~~~~~~~~~~~g~tlL~a~~~~g~~~p~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~ 82 (340)
T PRK11872 3 HKVALSFADGKTLFFPVGKDELLLDAALRNGINLPLDCREGVCGTCQGRCESGIYSQDYVDEDALSERDLAQRKMLACQT 82 (340)
T ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHcCCCCcCCCCCeECCCCEEEEEeCccccCccccccCCHHHHhCCeEEEeeC
Confidence 455553356766778999999999999999999999999999999999999999874 344568888888999999999
Q ss_pred EEcCCeEEEecCC
Q 031979 133 YPTSDCVIYTHKE 145 (149)
Q Consensus 133 ~~~~d~~I~~~~~ 145 (149)
++.+|++|+++.+
T Consensus 83 ~~~~d~~i~~~~~ 95 (340)
T PRK11872 83 RVKSDAAFYFDFD 95 (340)
T ss_pred EECCceEEEecCc
Confidence 9999999998754
No 13
>PRK05713 hypothetical protein; Provisional
Probab=99.80 E-value=2.5e-19 Score=146.67 Aligned_cols=80 Identities=24% Similarity=0.541 Sum_probs=73.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEEcCCeEEE
Q 031979 62 PNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIY 141 (149)
Q Consensus 62 ~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~~~d~~I~ 141 (149)
.+| ++|++++|+|||++++++||+++++|++|.||+|++++++|++.......|++++.++|+||+||+++.+|++|+
T Consensus 6 ~~~--~~~~~~~g~tlL~a~~~~gi~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~l~~~~~~~g~~L~C~~~~~~d~~i~ 83 (312)
T PRK05713 6 VGE--RRWSVPAGSNLLDALNAAGVAVPYSCRAGSCHACLVRCLQGEPEDALPEALAAEKREQGWRLACQCRVVGDLRVE 83 (312)
T ss_pred cCC--eEEEECCCCcHHHHHHHcCCCCCcCCCCcCCCCCeEEEEeCccccCccccCCHHHHhCCeEEEeECEECCceEEE
Confidence 567 899999999999999999999999999999999999999999876555678888889999999999999999999
Q ss_pred ec
Q 031979 142 TH 143 (149)
Q Consensus 142 ~~ 143 (149)
++
T Consensus 84 ~~ 85 (312)
T PRK05713 84 VF 85 (312)
T ss_pred ec
Confidence 86
No 14
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=99.79 E-value=5e-19 Score=125.55 Aligned_cols=84 Identities=27% Similarity=0.425 Sum_probs=68.4
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC-CcccCCcEEEEeeCcccCCCCCCCChh------hccCCeEEeeeeE
Q 031979 61 GPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR-AGACSTCAGQMVSGSVDQSDGSFLDDK------QMEKGFVLTCVAY 133 (149)
Q Consensus 61 ~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~-~G~CGtC~v~v~~G~v~~~~~~~L~~~------~~~~g~~LaCq~~ 133 (149)
.++| +++++++|+|||++++++|++++++|+ .|.||+|+++|.+|.........++++ ++.+++||+||++
T Consensus 12 ~p~~--~~~~~~~g~tLL~a~~~~gi~i~~~CgG~G~CgtC~v~V~~G~~~~~~~~~~e~~~L~~~~~~~~~~RLaCq~~ 89 (110)
T TIGR02007 12 CPEG--AVVEAKPGETILDVALDNGIEIEHACEKSCACTTCHCIVREGFDSLEEASEQEEDMLDKAWGLEPDSRLSCQAV 89 (110)
T ss_pred CCCC--eEEEECCCChHHHHHHHcCCCccccCCCCceeCCCEEEEeeccccCCCCCHHHHHHHhhccCCCCCcEEeeeEE
Confidence 3566 899999999999999999999999999 799999999999996544332222221 3467899999999
Q ss_pred Ec-CCeEEEecCCc
Q 031979 134 PT-SDCVIYTHKES 146 (149)
Q Consensus 134 ~~-~d~~I~~~~~~ 146 (149)
+. +|++|+++..+
T Consensus 90 ~~~~dl~v~~~~~~ 103 (110)
T TIGR02007 90 VADEDLVVEIPKYT 103 (110)
T ss_pred EcCCCEEEEECchh
Confidence 88 59999998754
No 15
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.77 E-value=1.7e-18 Score=146.46 Aligned_cols=94 Identities=18% Similarity=0.399 Sum_probs=80.7
Q ss_pred CceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC-CcccCCcEEEEeeCcccCC--CCCCCChhhccCCeEE
Q 031979 52 MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR-AGACSTCAGQMVSGSVDQS--DGSFLDDKQMEKGFVL 128 (149)
Q Consensus 52 ~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~-~G~CGtC~v~v~~G~v~~~--~~~~L~~~~~~~g~~L 128 (149)
+.+++|++...+|..+++++++|+|||++++++|+++++.|+ .|.||+|++++.+|.+... +...|++++.++|+||
T Consensus 27 ~~~~~v~v~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~G~~~~~~~~~~~L~~~~~~~g~rL 106 (405)
T TIGR01941 27 VSSGDITIGINDDEEKSITVPAGGKLLNTLASNGIFISSACGGGGTCGQCRVRVVEGGGEILPTELSHFSKREAKEGWRL 106 (405)
T ss_pred cccccEEEEEcCCCceEEEECCCChHHHHHHHcCCCCcccCCCccEeCCCEEEEccCCcCCChhhhhhcCHhHhcCCcEE
Confidence 456677775456666899999999999999999999999999 5899999999999977643 3457888888999999
Q ss_pred eeeeEEcCCeEEEecCC
Q 031979 129 TCVAYPTSDCVIYTHKE 145 (149)
Q Consensus 129 aCq~~~~~d~~I~~~~~ 145 (149)
+||+++.+|++|+++..
T Consensus 107 aCq~~~~~d~~i~~~~~ 123 (405)
T TIGR01941 107 SCQVKVKQDMSIEIPEE 123 (405)
T ss_pred EeeCEECCCEEEEECcc
Confidence 99999999999999743
No 16
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=99.76 E-value=2.3e-18 Score=127.30 Aligned_cols=94 Identities=15% Similarity=0.266 Sum_probs=78.9
Q ss_pred ceeEEEEEcCCCCeEEEEcCCCchHHHHHHHc-CCCCCCCCC-CcccCCcEEEEeeCcccC------CCCCCCChh-hcc
Q 031979 53 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDT-GMELPYSCR-AGACSTCAGQMVSGSVDQ------SDGSFLDDK-QME 123 (149)
Q Consensus 53 ~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi~i~~~C~-~G~CGtC~v~v~~G~v~~------~~~~~L~~~-~~~ 123 (149)
..++|+|...+|..+++++++|+|||+++.++ +++|++.|+ .|.||+|+|+|.+|+.+. .|...|+.. +..
T Consensus 34 g~v~I~~~~~dG~~~~v~~~~G~sLLeal~~~~~i~i~~~CGG~g~CgtC~V~V~~g~~~~l~~~~~~E~~~L~~~~~~~ 113 (143)
T PTZ00490 34 GKVKVCVKKRDGTHCDVEVPVGMSLMHALRDVAKLDVEGTCNGCMQCATCHVYLSAASFKKLGGPSEEEEDVLAKALDVK 113 (143)
T ss_pred CcEEEEEEcCCCCEEEEEECCCccHHHHHHHcCCCCccccCCCCCEeCCCEEEECCCccccCCCCChHHHHHhhccccCC
Confidence 46788888788988999999999999999995 799999999 999999999999875442 233556655 678
Q ss_pred CCeEEeeeeEEcC---CeEEEecCCc
Q 031979 124 KGFVLTCVAYPTS---DCVIYTHKES 146 (149)
Q Consensus 124 ~g~~LaCq~~~~~---d~~I~~~~~~ 146 (149)
+++||+||..+.. +++|++|+++
T Consensus 114 ~gsRLaCQi~v~~~ldgl~V~vp~~~ 139 (143)
T PTZ00490 114 ETSRLACQVDLTPEMDGLEVELPSYV 139 (143)
T ss_pred CCcEEeeeEEEecCCCCEEEEeCccc
Confidence 8999999999986 5699999875
No 17
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=99.75 E-value=3.1e-18 Score=113.48 Aligned_cols=73 Identities=34% Similarity=0.725 Sum_probs=62.6
Q ss_pred CCCCeEEEEcCCCch-HHHHHHHc-CCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCe-EEeeeeEEc
Q 031979 62 PNGEENEFDAPDDAY-IIDSAEDT-GMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGF-VLTCVAYPT 135 (149)
Q Consensus 62 ~~G~~~~~~v~~g~t-LLea~~~~-Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~-~LaCq~~~~ 135 (149)
.+|+.++|++++|+| ||++|+++ |++++++|+.|.||+|+++|++|++ +.+...+++++..+++ ||+||++|+
T Consensus 3 i~g~~~~~~~~~~~~~ll~~~~~~~gi~i~~~C~~g~Cg~C~v~v~~G~~-~~~~~~~~~~~~~~~~~rLaCq~~~t 78 (78)
T PF00111_consen 3 INGKGVTVEVPPGETLLLDALERAGGIGIPYSCGGGGCGTCRVRVLEGEV-QSNETFLEDEELAEGGIRLACQTRVT 78 (78)
T ss_dssp TTTEEEEEEEETTSBBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEEESEE-ETTTSSSHHHHHHTTEEEEGGGSEES
T ss_pred ECCeEEEEEeCCCccHHHHHHHHcCCCCcccCCCCCccCCcEEEEeeCcc-cCCcccCCHHHHHcCCCcCCcEEEeC
Confidence 577778999999999 99999999 9999999998889999999999999 4445566666666665 799999874
No 18
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.71 E-value=4e-17 Score=138.30 Aligned_cols=89 Identities=19% Similarity=0.415 Sum_probs=75.0
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC-CcccCCcEEEEeeCcccCC--CCCCCChhhccCCeEEee
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR-AGACSTCAGQMVSGSVDQS--DGSFLDDKQMEKGFVLTC 130 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~-~G~CGtC~v~v~~G~v~~~--~~~~L~~~~~~~g~~LaC 130 (149)
.++|++ ..+ ..+++++++|+|||++++++|++++++|+ +|.||+|++++++|.+... +...|++++.++|+||+|
T Consensus 35 ~~~i~~-~~~-~~~~~~~~~g~tLL~a~~~~gi~i~~~C~g~G~CgtC~v~v~~G~~~~~~~e~~~l~~~e~~~g~rLaC 112 (409)
T PRK05464 35 DVTIKI-NGD-PEKTITVPAGGKLLGALASNGIFLSSACGGGGSCGQCRVKVKEGGGDILPTELSHISKREAKEGWRLSC 112 (409)
T ss_pred cEEEEE-cCC-CcEEEEECCCchHHHHHHHcCCCcccCCCCccEeCCCEEEEecCCcCCChhhhhhcCHhhccCCcEEEe
Confidence 445555 222 13889999999999999999999999999 5999999999999987643 345688888889999999
Q ss_pred eeEEcCCeEEEecC
Q 031979 131 VAYPTSDCVIYTHK 144 (149)
Q Consensus 131 q~~~~~d~~I~~~~ 144 (149)
|+++.+|++|+++.
T Consensus 113 q~~~~~d~~ie~~~ 126 (409)
T PRK05464 113 QVKVKQDMKIEVPE 126 (409)
T ss_pred eCEECCCEEEEECc
Confidence 99999999999874
No 19
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.61 E-value=1.2e-15 Score=123.85 Aligned_cols=90 Identities=17% Similarity=0.389 Sum_probs=76.8
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC-CcccCCcEEEEeeCcccCC--CCCCCChhhccCCeEEee
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR-AGACSTCAGQMVSGSVDQS--DGSFLDDKQMEKGFVLTC 130 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~-~G~CGtC~v~v~~G~v~~~--~~~~L~~~~~~~g~~LaC 130 (149)
..+|++ .++..+++.+++|.+||.++..+||.|++.|+ .|.||.|+|+|.+|.-+.. +...++..+.++||||+|
T Consensus 36 d~ti~I--N~d~e~~~t~~aG~kLL~~L~~~gifi~SaCGGggsC~QCkv~v~~ggge~LpTe~sh~skrea~eG~RLsC 113 (410)
T COG2871 36 DITIKI--NGDPEKTKTVPAGGKLLGALASSGIFISSACGGGGSCGQCKVRVKKGGGEILPTELSHISKREAKEGWRLSC 113 (410)
T ss_pred ceEEEe--CCChhhceecCCchhHHHHHHhCCcccccCCCCCccccccEEEEecCCCccCcchhhhhhhhhhhccceEEE
Confidence 455665 33345899999999999999999999999999 8999999999998865543 445677788899999999
Q ss_pred eeEEcCCeEEEecCC
Q 031979 131 VAYPTSDCVIYTHKE 145 (149)
Q Consensus 131 q~~~~~d~~I~~~~~ 145 (149)
|+.++.||.|++|++
T Consensus 114 Q~~Vk~dm~levpEe 128 (410)
T COG2871 114 QVNVKHDMDLEVPEE 128 (410)
T ss_pred EecccccceeechHH
Confidence 999999999999875
No 20
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=99.51 E-value=1.3e-14 Score=124.30 Aligned_cols=90 Identities=26% Similarity=0.427 Sum_probs=73.2
Q ss_pred eEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC-CcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeE
Q 031979 55 YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR-AGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAY 133 (149)
Q Consensus 55 ~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~-~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~ 133 (149)
+.|+| .++| +..+ ++|+|||+++++.|+.|.+.|+ .|.||.|+|.|.+|.....+..--..-.+..||||+||++
T Consensus 2 p~v~f-~psg--kr~~-~~g~~il~aar~~gv~i~s~cggk~~cgkc~v~v~~g~~~i~s~~dh~k~~~~~g~rlac~~~ 77 (614)
T COG3894 2 PLVTF-MPSG--KRGE-DEGTTILDAARRLGVYIRSVCGGKGTCGKCQVVVQEGNHKIVSSTDHEKYLRERGYRLACQAQ 77 (614)
T ss_pred ceeEe-ecCC--CcCC-CCCchHHHHHHhhCceEeeecCCCccccceEEEEEeCCceeccchhHHHHHHhhceeeeeehh
Confidence 56889 5999 7777 9999999999999999999999 9999999999999975432210001112456999999999
Q ss_pred EcCCeEEEecCCcCC
Q 031979 134 PTSDCVIYTHKESEL 148 (149)
Q Consensus 134 ~~~d~~I~~~~~~~~ 148 (149)
+.+|++|.+|+++.+
T Consensus 78 v~gd~~i~ip~es~l 92 (614)
T COG3894 78 VLGDLVIFIPPESRL 92 (614)
T ss_pred hcCceEEEcCchhhH
Confidence 999999999998653
No 21
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=99.20 E-value=3.5e-11 Score=89.15 Aligned_cols=92 Identities=21% Similarity=0.339 Sum_probs=75.1
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC-CcccCCcEEEEeeCcccCC------CCCCCCh-hhccCC
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR-AGACSTCAGQMVSGSVDQS------DGSFLDD-KQMEKG 125 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~-~G~CGtC~v~v~~G~v~~~------~~~~L~~-~~~~~g 125 (149)
..+|+|+.++|.++.+.+..|+|||+++.++||+++..|. .-.|.+|+|.|.+-..+.. |..+|+- -.+.+.
T Consensus 43 ~i~Itfv~~dG~~~~i~g~vGdtlLd~ah~n~idleGACEgslACSTCHViv~~~~yekl~ep~DeE~DmLDlA~gLt~t 122 (159)
T KOG3309|consen 43 DIKITFVDPDGEEIKIKGKVGDTLLDAAHENNLDLEGACEGSLACSTCHVIVDEEYYEKLPEPEDEENDMLDLAFGLTET 122 (159)
T ss_pred eEEEEEECCCCCEEEeeeecchHHHHHHHHcCCCccccccccccccceEEEEcHHHHhcCCCCcchHHHHHHhhhccccc
Confidence 5789999999999999999999999999999999999999 8999999999876544321 2344442 235678
Q ss_pred eEEeeeeEEcC---CeEEEecCC
Q 031979 126 FVLTCVAYPTS---DCVIYTHKE 145 (149)
Q Consensus 126 ~~LaCq~~~~~---d~~I~~~~~ 145 (149)
+||.||....- .++|.+|+.
T Consensus 123 SRLGCQI~l~keldG~~v~vP~a 145 (159)
T KOG3309|consen 123 SRLGCQIVLTKELDGMRVAVPEA 145 (159)
T ss_pred cccceEEEeccccCCcEEECccc
Confidence 99999998865 478888865
No 22
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=99.17 E-value=5e-11 Score=94.49 Aligned_cols=71 Identities=23% Similarity=0.485 Sum_probs=60.0
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC------CcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEe
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR------AGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLT 129 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~------~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~La 129 (149)
.|+|. .+| +.|++++|+|||+|++++|+.||+.|. .|.|+.|+|+| +|. .+.+.+
T Consensus 3 ~v~i~-idg--~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v-~g~---------------~~~~~a 63 (234)
T PRK07569 3 VKTLT-IDD--QLVSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEI-EGS---------------NKLLPA 63 (234)
T ss_pred eEEEE-ECC--EEEEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEE-CCC---------------CccccC
Confidence 35553 578 789999999999999999999999999 89999999988 441 145679
Q ss_pred eeeEEcCCeEEEecCC
Q 031979 130 CVAYPTSDCVIYTHKE 145 (149)
Q Consensus 130 Cq~~~~~d~~I~~~~~ 145 (149)
|++.+..+|+|.+..+
T Consensus 64 C~t~v~~Gm~v~t~~~ 79 (234)
T PRK07569 64 CVTPVAEGMVVQTNTP 79 (234)
T ss_pred cCCCCCCCCEEEECCH
Confidence 9999999999988654
No 23
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.14 E-value=4.3e-11 Score=80.70 Aligned_cols=69 Identities=22% Similarity=0.464 Sum_probs=48.1
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCC----------cccCCcEEEEeeCcccCCCCCCCChhhccCC
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRA----------GACSTCAGQMVSGSVDQSDGSFLDDKQMEKG 125 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~----------G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g 125 (149)
.|+| ..|| +.+++++|+|||+|+.++|+.||+.|.. |.|+.|.|+|- | ..
T Consensus 3 ~v~i-~idG--~~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~-g----------------~~ 62 (82)
T PF13510_consen 3 MVTI-TIDG--KPVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVD-G----------------EP 62 (82)
T ss_dssp EEEE-EETT--EEEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEES-S----------------EE
T ss_pred EEEE-EECC--EEEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEEC-C----------------Cc
Confidence 4666 3689 8999999999999999999999999986 99999999884 3 12
Q ss_pred eEEeeeeEEcCCeEEEecC
Q 031979 126 FVLTCVAYPTSDCVIYTHK 144 (149)
Q Consensus 126 ~~LaCq~~~~~d~~I~~~~ 144 (149)
.+.||++.+..+|.|....
T Consensus 63 ~v~AC~t~v~~GM~V~T~s 81 (82)
T PF13510_consen 63 NVRACSTPVEDGMVVETQS 81 (82)
T ss_dssp EEETTT-B--TTEEEE---
T ss_pred ceEcccCCCcCCcEEEEeE
Confidence 3689999999999998653
No 24
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=98.98 E-value=7.1e-10 Score=101.74 Aligned_cols=75 Identities=21% Similarity=0.528 Sum_probs=63.0
Q ss_pred EEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC------CcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEee
Q 031979 57 VKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR------AGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTC 130 (149)
Q Consensus 57 V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~------~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaC 130 (149)
|+| ..+| +.+++++|+|||+|++++||.||+.|. .|.|+.|+|+|.+|..+ ...+++++|
T Consensus 2 ~~i-~idg--~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~v~v~~g~~~-----------~~~~~~~aC 67 (847)
T PRK08166 2 ATI-HVDG--KEYEVNGADNLLEACLSLGIDIPYFCWHPALGSVGACRQCAVKQYQNPED-----------TRGRLVMSC 67 (847)
T ss_pred eEE-EECC--EEEEeCCCCHHHHHHHHcCCCCCccccCCCCCCCCccCCCeEEEeecCcc-----------CCCCcccCc
Confidence 344 2578 789999999999999999999999998 69999999999988431 224678999
Q ss_pred eeEEcCCeEEEecCC
Q 031979 131 VAYPTSDCVIYTHKE 145 (149)
Q Consensus 131 q~~~~~d~~I~~~~~ 145 (149)
++.+..+|+|.+..+
T Consensus 68 ~~~v~~gm~v~t~~~ 82 (847)
T PRK08166 68 MTPATDGTFISIDDP 82 (847)
T ss_pred CCCCCCCCEEEeCCH
Confidence 999999999988654
No 25
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=98.87 E-value=5.1e-09 Score=85.36 Aligned_cols=73 Identities=22% Similarity=0.505 Sum_probs=61.5
Q ss_pred eeEEEEEcCCCCeEEEEc-CCCchHHHHHHHcCCCCCCCCC------CcccCCcEEEEeeCcccCCCCCCCChhhccCCe
Q 031979 54 VYKVKLIGPNGEENEFDA-PDDAYIIDSAEDTGMELPYSCR------AGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGF 126 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v-~~g~tLLea~~~~Gi~i~~~C~------~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~ 126 (149)
.++|.+. .|| +++++ ++|+|||+|++++||.||+-|. .|.|..|.|.| +|. .+.
T Consensus 66 ~~~~~I~-IDG--k~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEV-eG~---------------~~l 126 (297)
T PTZ00305 66 KPRAIMF-VNK--RPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQV-DGT---------------QNL 126 (297)
T ss_pred CCceEEE-ECC--EEEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEE-CCC---------------cCc
Confidence 5677774 789 89999 9999999999999999999998 58999999988 342 235
Q ss_pred EEeeeeEEcCCeEEEecCC
Q 031979 127 VLTCVAYPTSDCVIYTHKE 145 (149)
Q Consensus 127 ~LaCq~~~~~d~~I~~~~~ 145 (149)
.-+|.+.+...|+|.+..+
T Consensus 127 v~AC~tpV~eGM~V~T~Se 145 (297)
T PTZ00305 127 VVSCATVALPGMSIITDSR 145 (297)
T ss_pred ccccCCcCCCCCEEEeCCH
Confidence 6799999999999988654
No 26
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=98.83 E-value=4.1e-09 Score=85.23 Aligned_cols=66 Identities=20% Similarity=0.338 Sum_probs=51.7
Q ss_pred cCCCCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccCCcee--------EEE-EEcCCCCeEEEEcCCCchHHHHHH
Q 031979 14 AAPRSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASAMAVY--------KVK-LIGPNGEENEFDAPDDAYIIDSAE 82 (149)
Q Consensus 14 ~~~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~~~~~--------~V~-~~~~~G~~~~~~v~~g~tLLea~~ 82 (149)
..|..++++|+|||.+ |++|+..++++|++++++|+|.+... ... + ..+| +.+.+++|+||||+++
T Consensus 191 ~~~~~~r~~y~CGp~~fm~av~~~l~~~g~~~~~vh~E~F~~~~~~~~~~~~~~~~-~~s~--~~~~~~~g~t~lea~~ 266 (266)
T COG1018 191 AAPDGGREVYLCGPGPFMQAVRLALEALGVPDDRVHLEGFGPMLKDTAALLPFTTL-ARSG--KEVRVPPGQTLLEAAE 266 (266)
T ss_pred cCCCCCCEEEEECCHHHHHHHHHHHHHcCCChhcEEEeecCCCCccccccccchhh-cccc--ceEecCCCchHHHhhC
Confidence 3444459999999999 89999999999999999988743211 111 3 3567 7899999999999874
No 27
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=98.73 E-value=3.7e-08 Score=85.30 Aligned_cols=60 Identities=27% Similarity=0.498 Sum_probs=50.8
Q ss_pred EEEEcCCCchHHHHHHH------cCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEEcCCeEE
Q 031979 67 NEFDAPDDAYIIDSAED------TGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVI 140 (149)
Q Consensus 67 ~~~~v~~g~tLLea~~~------~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~~~d~~I 140 (149)
.++++++|+|||++|++ .++..+++|+.|.||+|.+++ +|. .+|+|++.+.++++|
T Consensus 23 ~~v~~~~~~tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v-~G~-----------------~~laC~~~~~~~~~i 84 (486)
T PRK06259 23 YEVPVKEGMTVLDALEYINKTYDANIAFRSSCRAGQCGSCAVTI-NGE-----------------PVLACKTEVEDGMII 84 (486)
T ss_pred EEEeCCCCChHHHHHHHhchhcCCCceecCCCCCCCCCCCEEEE-CCe-----------------EecccccCCCCCCEE
Confidence 45667799999999995 666789999999999999985 663 478999999999999
Q ss_pred EecC
Q 031979 141 YTHK 144 (149)
Q Consensus 141 ~~~~ 144 (149)
+...
T Consensus 85 ~~~~ 88 (486)
T PRK06259 85 EPLD 88 (486)
T ss_pred EecC
Confidence 8764
No 28
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.57 E-value=1.1e-07 Score=85.15 Aligned_cols=71 Identities=27% Similarity=0.528 Sum_probs=59.4
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC------CcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEe
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR------AGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLT 129 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~------~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~La 129 (149)
.|+| ..|| +.+++++|+|||++++++|+.||..|. .|.|+.|.|+| +|. .+...+
T Consensus 3 ~v~~-~idg--~~~~~~~g~ti~~a~~~~g~~ip~~c~~~~~~~~g~C~~C~V~v-~g~---------------~~~~~a 63 (652)
T PRK12814 3 TISL-TING--RSVTAAPGTSILEAAASAGITIPTLCFHQELEATGSCWMCIVEI-KGK---------------NRFVPA 63 (652)
T ss_pred eEEE-EECC--EEEEeCCcCcHHHHHHHcCCccccccCCCCCCCccccceeEEEE-CCC---------------cceecC
Confidence 3555 3588 899999999999999999999999997 69999999987 341 135789
Q ss_pred eeeEEcCCeEEEecCC
Q 031979 130 CVAYPTSDCVIYTHKE 145 (149)
Q Consensus 130 Cq~~~~~d~~I~~~~~ 145 (149)
|++.+..+|.|.+..+
T Consensus 64 C~t~~~~Gm~v~t~~~ 79 (652)
T PRK12814 64 CSTAVSEGMVIETENA 79 (652)
T ss_pred cCCCCCCCCEEEeCcH
Confidence 9999999999988654
No 29
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=98.49 E-value=2.3e-07 Score=83.73 Aligned_cols=71 Identities=31% Similarity=0.581 Sum_probs=58.2
Q ss_pred EEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC------CcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEee
Q 031979 57 VKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR------AGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTC 130 (149)
Q Consensus 57 V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~------~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaC 130 (149)
|+| ..|| +++++++|+|||+|++++||.||+-|. .|.|..|.|.|..+. ...+-+|
T Consensus 2 ~~~-~Idg--~~v~v~~g~til~a~~~~gi~IP~lCy~~~l~~~g~Cr~ClVev~~~~---------------~~~~~sC 63 (687)
T PRK09130 2 VKL-KVDG--KEIEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKGGP---------------PKPVASC 63 (687)
T ss_pred eEE-EECC--EEEEeCCCCHHHHHHHHcCCCcCcccCCCCCCCCCCCCCCEEEECCCC---------------CCccccc
Confidence 445 3588 899999999999999999999999997 799999999984211 1235589
Q ss_pred eeEEcCCeEEEecCC
Q 031979 131 VAYPTSDCVIYTHKE 145 (149)
Q Consensus 131 q~~~~~d~~I~~~~~ 145 (149)
.+.+...|+|.+..+
T Consensus 64 ~~~v~~gm~v~T~s~ 78 (687)
T PRK09130 64 AMPVGEGMVIFTNTP 78 (687)
T ss_pred CCCCCCCCEEEeCCH
Confidence 998898999988654
No 30
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=98.45 E-value=2.8e-07 Score=83.06 Aligned_cols=70 Identities=29% Similarity=0.610 Sum_probs=56.8
Q ss_pred EEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC------CcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEee
Q 031979 57 VKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR------AGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTC 130 (149)
Q Consensus 57 V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~------~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaC 130 (149)
+|+ ..|| +++++++|+|||+|++++||+||+-|. .|.|..|.|.+..+. ..+-+|
T Consensus 2 ~tI-~IDG--~ei~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg~~----------------k~~~SC 62 (693)
T COG1034 2 VTI-TIDG--KEIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEGAP----------------KLVASC 62 (693)
T ss_pred eEE-EECC--EEEecCCCcHHHHHHHHcCCCCCcccccCCCCcccceeEEEEEecCCC----------------cccccc
Confidence 344 2588 899999999999999999999999998 599999999875431 346789
Q ss_pred eeEEcCCeEEEecCC
Q 031979 131 VAYPTSDCVIYTHKE 145 (149)
Q Consensus 131 q~~~~~d~~I~~~~~ 145 (149)
.+.+..+++|.+..+
T Consensus 63 ~tpv~dGM~I~T~s~ 77 (693)
T COG1034 63 ATPVTDGMVISTNSE 77 (693)
T ss_pred ccccCCCeEEecCCH
Confidence 997777888877554
No 31
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=98.34 E-value=7.3e-07 Score=79.21 Aligned_cols=67 Identities=27% Similarity=0.509 Sum_probs=56.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC------CcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEEc
Q 031979 62 PNGEENEFDAPDDAYIIDSAEDTGMELPYSCR------AGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPT 135 (149)
Q Consensus 62 ~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~------~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~~ 135 (149)
.|| +++++++|+|||++++++||.||+-|. .|.|..|.|+| +|... ..+.+|.+.+.
T Consensus 3 idg--~~~~~~~g~~il~a~~~~gi~ip~~C~~~~l~~~g~Cr~C~v~v-~g~~~--------------~~~~aC~~~~~ 65 (603)
T TIGR01973 3 IDG--KELEVPKGTTVLQACLSAGIEIPRFCYHEKLSIAGNCRMCLVEV-EKFPD--------------KPVASCATPVT 65 (603)
T ss_pred ECC--EEEEeCCCCHHHHHHHHcCCCccccCCCCCCCCCCccccCEEEE-CCCCC--------------CcccccCCCCC
Confidence 478 899999999999999999999999997 89999999997 33110 14779999999
Q ss_pred CCeEEEecCC
Q 031979 136 SDCVIYTHKE 145 (149)
Q Consensus 136 ~d~~I~~~~~ 145 (149)
.+|+|.+..+
T Consensus 66 ~gm~v~t~~~ 75 (603)
T TIGR01973 66 DGMKISTNSE 75 (603)
T ss_pred CCCEEEeCCH
Confidence 9999988653
No 32
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=98.30 E-value=1.3e-06 Score=80.17 Aligned_cols=69 Identities=29% Similarity=0.536 Sum_probs=58.0
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC------CcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEe
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR------AGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLT 129 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~------~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~La 129 (149)
.|+| ..|| +++++++|+|||+|++++||.||+-|. .|.|..|.|.| +|. .+.+.+
T Consensus 4 ~v~~-~idg--~~~~~~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev-~g~---------------~~~~~a 64 (797)
T PRK07860 4 LVTL-TIDG--VEVSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEV-EGQ---------------RKPQAS 64 (797)
T ss_pred eEEE-EECC--EEEEeCCCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEE-CCC---------------cccccc
Confidence 3555 3689 899999999999999999999999997 79999999998 331 123569
Q ss_pred eeeEEcCCeEEEec
Q 031979 130 CVAYPTSDCVIYTH 143 (149)
Q Consensus 130 Cq~~~~~d~~I~~~ 143 (149)
|.+.+...|+|+..
T Consensus 65 C~t~v~~gm~V~t~ 78 (797)
T PRK07860 65 CTTTVTDGMVVKTQ 78 (797)
T ss_pred cCCCCCCCcEEEeC
Confidence 99999999999885
No 33
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=98.29 E-value=1.4e-06 Score=80.11 Aligned_cols=68 Identities=26% Similarity=0.505 Sum_probs=56.5
Q ss_pred EEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC------CcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEee
Q 031979 57 VKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR------AGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTC 130 (149)
Q Consensus 57 V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~------~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaC 130 (149)
|+| ..|| +++++++|+|||++++++||.||+-|. .|.|+.|.|.| +|. .+++|
T Consensus 2 v~i-~IdG--~~v~~~~G~til~aa~~~gi~iP~lC~~~~~~~~G~Cr~C~VeV-~G~-----------------~~~AC 60 (819)
T PRK08493 2 ITI-TING--KECEAQEGEYILNVARRNGIFIPAICYLSGCSPTLACRLCMVEA-DGK-----------------RVYSC 60 (819)
T ss_pred eEE-EECC--EEEEeCCCCHHHHHHHHcCCccccccccCCCCCCccccceEEEE-CCE-----------------Eeccc
Confidence 455 3688 899999999999999999999998774 69999999987 341 16699
Q ss_pred eeEEcCCeEEEecCC
Q 031979 131 VAYPTSDCVIYTHKE 145 (149)
Q Consensus 131 q~~~~~d~~I~~~~~ 145 (149)
.+.+...|+|.+..+
T Consensus 61 ~t~v~dGM~V~T~s~ 75 (819)
T PRK08493 61 NTKAKEGMNILTNTP 75 (819)
T ss_pred cCCCCCCCEEEecCH
Confidence 999999999988654
No 34
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=98.27 E-value=1.2e-06 Score=79.86 Aligned_cols=70 Identities=21% Similarity=0.521 Sum_probs=58.0
Q ss_pred EEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC------CcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEee
Q 031979 57 VKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR------AGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTC 130 (149)
Q Consensus 57 V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~------~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaC 130 (149)
|+| ..|| +++++++|+|||+|++++||.||+-|. .|.|..|.|+| +|. .+.+.+|
T Consensus 2 ~~~-~idg--~~~~~~~g~~il~a~~~~g~~ip~~c~~~~~~~~~~C~~C~v~v-~~~---------------~~~~~aC 62 (776)
T PRK09129 2 VEI-EIDG--KKVEVPEGSMVIEAADKAGIYIPRFCYHKKLSIAANCRMCLVEV-EKA---------------PKPLPAC 62 (776)
T ss_pred eEE-EECC--EEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCCCcceeEEEE-CCC---------------CCcCccc
Confidence 455 3588 899999999999999999999999999 59999999997 331 1246799
Q ss_pred eeEEcCCeEEEecCC
Q 031979 131 VAYPTSDCVIYTHKE 145 (149)
Q Consensus 131 q~~~~~d~~I~~~~~ 145 (149)
.+.+..+|+|.+..+
T Consensus 63 ~~~~~~gm~v~t~~~ 77 (776)
T PRK09129 63 ATPVTDGMKVFTRSE 77 (776)
T ss_pred CCCCCCCCEEEcCCH
Confidence 999999999988644
No 35
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=98.26 E-value=9.8e-07 Score=62.68 Aligned_cols=52 Identities=25% Similarity=0.544 Sum_probs=38.4
Q ss_pred EEEEcCCCchHHHHHHHc------CCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEEcC
Q 031979 67 NEFDAPDDAYIIDSAEDT------GMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTS 136 (149)
Q Consensus 67 ~~~~v~~g~tLLea~~~~------Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~~~ 136 (149)
.+++++++.|+|++|..- -+...++|+.|+||+|.++| .|. .+|||.+....
T Consensus 21 y~v~~~~~~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~I-NG~-----------------~~LAC~t~v~~ 78 (110)
T PF13085_consen 21 YEVPVEPGMTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRI-NGR-----------------PRLACKTQVDD 78 (110)
T ss_dssp EEEEGGSTSBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEE-TTE-----------------EEEGGGSBGGG
T ss_pred EEecCCCCCcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEE-CCc-----------------eecceeeEchh
Confidence 578888999999999652 46688999999999999975 553 37788777654
No 36
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=98.23 E-value=1.6e-06 Score=69.13 Aligned_cols=41 Identities=20% Similarity=0.547 Sum_probs=33.2
Q ss_pred EEEEcCCCchHHHHHHHcC------CCCCCCCCCcccCCcEEEEeeCc
Q 031979 67 NEFDAPDDAYIIDSAEDTG------MELPYSCRAGACSTCAGQMVSGS 108 (149)
Q Consensus 67 ~~~~v~~g~tLLea~~~~G------i~i~~~C~~G~CGtC~v~v~~G~ 108 (149)
.+++++++.|+|++|..-. +...++|+.|+||+|.++| .|.
T Consensus 26 y~v~~~~~~tvLdaL~~Ik~~~D~sL~fr~sCr~giCGsCam~I-NG~ 72 (239)
T PRK13552 26 YQLEETPGMTLFIALNRIREEQDPSLQFDFVCRAGICGSCAMVI-NGR 72 (239)
T ss_pred EEecCCCCCCHHHHHHHHHhcCCCCeeEeccCCCCCCCCceeEE-CCe
Confidence 5677779999999997632 5577999999999999975 663
No 37
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=98.23 E-value=1.9e-06 Score=69.13 Aligned_cols=41 Identities=15% Similarity=0.334 Sum_probs=33.0
Q ss_pred EEEEcCCCchHHHHHHHc-------------CCCCCCCCCCcccCCcEEEEeeCc
Q 031979 67 NEFDAPDDAYIIDSAEDT-------------GMELPYSCRAGACSTCAGQMVSGS 108 (149)
Q Consensus 67 ~~~~v~~g~tLLea~~~~-------------Gi~i~~~C~~G~CGtC~v~v~~G~ 108 (149)
.++++.++.|||++|..- -+...++||.|+||+|.++| .|.
T Consensus 25 y~v~~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr~giCGsCam~I-NG~ 78 (249)
T PRK08640 25 FEIPYRPNMNVISALMEIRRNPVNAKGEKTTPVVWDMNCLEEVCGACSMVI-NGK 78 (249)
T ss_pred EEecCCCCCcHHHHHHHHHhcccccccccCCCeeEecccCCCCCCcCeeEE-CCc
Confidence 566777999999999753 15678899999999999975 664
No 38
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=98.17 E-value=4.6e-06 Score=62.77 Aligned_cols=52 Identities=17% Similarity=0.424 Sum_probs=45.5
Q ss_pred eEEEEEcCCCCeEEEEcCCCchHHHHHHHcCC-CCCCCCCCcccCCcEEEEeeCc
Q 031979 55 YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGM-ELPYSCRAGACSTCAGQMVSGS 108 (149)
Q Consensus 55 ~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi-~i~~~C~~G~CGtC~v~v~~G~ 108 (149)
..|+| ..||+.++++++++++||+.|++.|+ ....+|+.|.||.|.|.| .|.
T Consensus 7 ~~i~~-~vNG~~~~~~~~~~~~Ll~~LR~~gltgtK~GC~~G~CGACtVlv-dg~ 59 (159)
T PRK09908 7 ITIEC-TINGMPFQLHAAPGTPLSELLREQGLLSVKQGCCVGECGACTVLV-DGT 59 (159)
T ss_pred eeEEE-EECCEEEEEecCCCCcHHHHHHHcCCCCCCCCcCCCCCCCcEEEE-CCc
Confidence 45777 47898888999999999999999987 699999999999999965 664
No 39
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=98.15 E-value=4.1e-06 Score=65.91 Aligned_cols=54 Identities=20% Similarity=0.503 Sum_probs=44.5
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEeeCcc
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMVSGSV 109 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~~G~v 109 (149)
...|+| ..||+.++++++++++||++|+++ |+ ....+|+.|.||.|.| +++|..
T Consensus 49 ~~~i~~-~VNG~~~~~~v~~~~tLLd~LR~~l~ltGtK~GC~~G~CGACTV-lVdG~~ 104 (217)
T PRK11433 49 ISPVTL-KVNGKTEQLEVDTRTTLLDALREHLHLTGTKKGCDHGQCGACTV-LVNGRR 104 (217)
T ss_pred CceEEE-EECCEEEEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCcCceEE-EECCEE
Confidence 345777 478987889999999999999985 54 4889999999999999 557743
No 40
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=98.14 E-value=5.3e-06 Score=66.76 Aligned_cols=42 Identities=17% Similarity=0.616 Sum_probs=35.5
Q ss_pred eEEEEcCCCchHHHHHHHcCC------CCCCCCCCcccCCcEEEEeeCc
Q 031979 66 ENEFDAPDDAYIIDSAEDTGM------ELPYSCRAGACSTCAGQMVSGS 108 (149)
Q Consensus 66 ~~~~~v~~g~tLLea~~~~Gi------~i~~~C~~G~CGtC~v~v~~G~ 108 (149)
..+++++++.|||++|+.-+. ...++|+.|+||+|.+.| .|.
T Consensus 21 ~y~v~~~~~~tvLd~L~~i~~~~d~~l~~r~~C~~g~CGsCa~~I-nG~ 68 (251)
T PRK12386 21 DYTVEVNEGEVVLDVIHRLQATQAPDLAVRWNCKAGKCGSCSAEI-NGR 68 (251)
T ss_pred EEEEeCCCCCCHHHHHHHhccccCCCCcccCCCCCCcCCCCEEEE-Ccc
Confidence 367888899999999999764 678999999999999965 663
No 41
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=98.07 E-value=2.5e-06 Score=69.32 Aligned_cols=55 Identities=13% Similarity=0.230 Sum_probs=43.0
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccCCceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcc
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGA 96 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~ 96 (149)
.+.++|+|||.+ |+++++.|.++|+++++++++ + . -.-.|+.|.
T Consensus 211 ~~~~vyiCGP~~m~~~v~~~L~~~Gv~~~~i~~~--------l-~--------------------------~~m~cg~g~ 255 (289)
T PRK08345 211 KNTYAAICGPPVMYKFVFKELINRGYRPERIYVT--------L-E--------------------------RRMRCGIGK 255 (289)
T ss_pred cccEEEEECCHHHHHHHHHHHHHcCCCHHHEEEE--------e-h--------------------------hcccccCcc
Confidence 457899999999 599999999999997776632 1 0 013699999
Q ss_pred cCCcEEEEeeC
Q 031979 97 CSTCAGQMVSG 107 (149)
Q Consensus 97 CGtC~v~v~~G 107 (149)
||.|+|....|
T Consensus 256 c~~c~~~~~~~ 266 (289)
T PRK08345 256 CGHCIVGTSTS 266 (289)
T ss_pred cCCCccCCCCc
Confidence 99999986554
No 42
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.06 E-value=8.3e-06 Score=67.86 Aligned_cols=42 Identities=21% Similarity=0.457 Sum_probs=36.4
Q ss_pred eEEEEcCCCchHHHHHHHcCCCCC------CCCCCcccCCcEEEEeeCc
Q 031979 66 ENEFDAPDDAYIIDSAEDTGMELP------YSCRAGACSTCAGQMVSGS 108 (149)
Q Consensus 66 ~~~~~v~~g~tLLea~~~~Gi~i~------~~C~~G~CGtC~v~v~~G~ 108 (149)
++++++++|+|||++|.+.++.++ .+|+.|+||+|.|+| +|.
T Consensus 20 ~~~v~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~i-nG~ 67 (329)
T PRK12577 20 TYTLEVEPGNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRI-NGR 67 (329)
T ss_pred EEEEECCCCChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEE-CCe
Confidence 367889999999999999998874 569999999999987 564
No 43
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=98.03 E-value=1.1e-05 Score=60.11 Aligned_cols=50 Identities=28% Similarity=0.566 Sum_probs=42.2
Q ss_pred EEEEcCCCCeEEEEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEeeCc
Q 031979 57 VKLIGPNGEENEFDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMVSGS 108 (149)
Q Consensus 57 V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~~G~ 108 (149)
|+| ..||+.++++++++++||+++++. |+ .+..+|+.|.||+|.|.| +|+
T Consensus 2 i~~-~vNG~~~~~~~~~~~~Ll~~LR~~lgltg~K~gC~~G~CGACtVlv-dg~ 53 (148)
T TIGR03193 2 LRL-TVNGRWREDAVADNMLLVDYLRDTVGLTGTKQGCDGGECGACTVLV-DGR 53 (148)
T ss_pred EEE-EECCEEEEeecCCCCcHHHHHHHhcCCCCCCCCCCCCCCCCCEEEE-CCe
Confidence 456 368888889999999999999984 76 599999999999999965 664
No 44
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=98.00 E-value=1.1e-05 Score=63.39 Aligned_cols=51 Identities=16% Similarity=0.309 Sum_probs=38.4
Q ss_pred CCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccCCceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCc
Q 031979 17 RSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAG 95 (149)
Q Consensus 17 ~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G 95 (149)
....++|+|||.+ |+++++.|++.|+ +.+++.|. |. .|+.|
T Consensus 165 ~~~~~vyicGp~~m~~~~~~~L~~~g~-~~~i~~e~-----------------f~--------------------~cg~g 206 (233)
T cd06220 165 EEYDAIYVCGPEIMMYKVLEILDERGV-RAQFSLER-----------------YM--------------------KCGIG 206 (233)
T ss_pred cCCCEEEEECCHHHHHHHHHHHHhcCC-cEEEEecc-----------------cc--------------------cCcCC
Confidence 3446899999999 5999999998888 23333221 11 89999
Q ss_pred ccCCcEEEEe
Q 031979 96 ACSTCAGQMV 105 (149)
Q Consensus 96 ~CGtC~v~v~ 105 (149)
.||.|.+...
T Consensus 207 ~C~~C~v~~~ 216 (233)
T cd06220 207 ICGSCCIDPT 216 (233)
T ss_pred CcCccEeccC
Confidence 9999999874
No 45
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=97.96 E-value=1e-05 Score=64.75 Aligned_cols=41 Identities=17% Similarity=0.429 Sum_probs=32.4
Q ss_pred EEEEcCCCchHHHHHHHc------CCCCCCCCCCcccCCcEEEEeeCc
Q 031979 67 NEFDAPDDAYIIDSAEDT------GMELPYSCRAGACSTCAGQMVSGS 108 (149)
Q Consensus 67 ~~~~v~~g~tLLea~~~~------Gi~i~~~C~~G~CGtC~v~v~~G~ 108 (149)
..++++++.|||++|... .+...++|+.|+||+|.++| .|.
T Consensus 27 ~~v~~~~~~tvl~~L~~ik~~~d~~l~fr~~C~~giCGsC~v~I-nG~ 73 (244)
T PRK12385 27 YEVPYDETTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMV-NNV 73 (244)
T ss_pred EEeeCCCCCcHHHHHHHHHHhcCCCceeccCCCCCcCCCCcceE-Ccc
Confidence 567777999999999553 23456899999999999976 563
No 46
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=97.95 E-value=7.5e-06 Score=65.81 Aligned_cols=42 Identities=21% Similarity=0.457 Sum_probs=32.9
Q ss_pred EEEE-cCCCchHHHHHHHc----------CCCCCCCCCCcccCCcEEEEeeCcc
Q 031979 67 NEFD-APDDAYIIDSAEDT----------GMELPYSCRAGACSTCAGQMVSGSV 109 (149)
Q Consensus 67 ~~~~-v~~g~tLLea~~~~----------Gi~i~~~C~~G~CGtC~v~v~~G~v 109 (149)
.+|+ +.++.|+|++|..- .+...++|+.|+||+|.++| .|.+
T Consensus 22 y~v~~~~~~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr~~iCGsCam~I-NG~p 74 (250)
T PRK07570 22 YEVDDISPDMSFLEMLDVLNEQLIEKGEEPVAFDHDCREGICGMCGLVI-NGRP 74 (250)
T ss_pred EEecCCCCCCcHHHHHHHHHHHhhccCCCCeeEeccccCCcCCcceeEE-CCcc
Confidence 3454 45899999999642 36788999999999999965 7765
No 47
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.92 E-value=4.1e-05 Score=62.46 Aligned_cols=42 Identities=17% Similarity=0.364 Sum_probs=35.4
Q ss_pred eEEEEcCCCchHHHHHHHcCCCC------CCCCCCcccCCcEEEEeeCc
Q 031979 66 ENEFDAPDDAYIIDSAEDTGMEL------PYSCRAGACSTCAGQMVSGS 108 (149)
Q Consensus 66 ~~~~~v~~g~tLLea~~~~Gi~i------~~~C~~G~CGtC~v~v~~G~ 108 (149)
.+.+++++|+|||++|.+.+..+ .++|+.|+||+|.+.| +|.
T Consensus 26 ~~~v~~~~~~tvLd~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~I-NG~ 73 (279)
T PRK12576 26 EYKVKVDRFTQVTEALRRIKEEQDPTLSYRASCHMAVCGSCGMKI-NGE 73 (279)
T ss_pred EEEEecCCCCHHHHHHHHhCCccCCCceecCCCCCCCCCCCEEEE-CCc
Confidence 36788899999999999977543 4899999999999987 664
No 48
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=97.91 E-value=1e-05 Score=64.93 Aligned_cols=31 Identities=16% Similarity=0.028 Sum_probs=27.2
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHcCCCCCccc
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFK 48 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~ 48 (149)
.+.++|+|||.+ |+++++.|++.|+++++++
T Consensus 191 ~~~~vylCGp~~mv~~~~~~L~~~Gv~~~~i~ 222 (263)
T PRK08221 191 DNMQVIVVGPPIMMKFTVLEFLKRGIKEENIW 222 (263)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCCHHHEE
Confidence 568899999999 5999999999999977665
No 49
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=97.87 E-value=1.6e-05 Score=63.73 Aligned_cols=32 Identities=16% Similarity=0.052 Sum_probs=27.2
Q ss_pred CCCCeEEEcCCch-HHHHHHHHHHcCCCCCccc
Q 031979 17 RSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFK 48 (149)
Q Consensus 17 ~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~ 48 (149)
..+.++|+|||.+ |+++++.|.+.|+++++++
T Consensus 188 ~~~~~v~lCGp~~mv~~~~~~L~~~Gv~~~~i~ 220 (261)
T TIGR02911 188 IEEVQAIVVGPPIMMKFTVQELLKKGIKEENIW 220 (261)
T ss_pred ccceEEEEECCHHHHHHHHHHHHHcCCCHHHEE
Confidence 3467899999999 5999999999999977655
No 50
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=97.84 E-value=3.8e-05 Score=69.65 Aligned_cols=66 Identities=24% Similarity=0.579 Sum_probs=50.5
Q ss_pred EEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC------CcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEee
Q 031979 57 VKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR------AGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTC 130 (149)
Q Consensus 57 V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~------~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaC 130 (149)
|++ +.+| +++++++|+|||+++.++||.||+-|. -|.|-+|.|. ++|. ..-+|
T Consensus 6 i~v-tidg--~~~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVE-idG~-----------------l~rsC 64 (978)
T COG3383 6 ITV-TIDG--RSIEVEEGTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVE-IDGK-----------------LVRSC 64 (978)
T ss_pred EEE-EECC--eEEecCCChHHHHHHHhcCCcccceeccCCCCcccccceEEEE-ecCc-----------------eeccc
Confidence 555 3578 899999999999999999999999998 3889999988 4664 23356
Q ss_pred eeEEcCCeEEEec
Q 031979 131 VAYPTSDCVIYTH 143 (149)
Q Consensus 131 q~~~~~d~~I~~~ 143 (149)
.+.+...++|.+.
T Consensus 65 sT~v~dGm~v~t~ 77 (978)
T COG3383 65 STPVEDGMVVRTN 77 (978)
T ss_pred cccccCCcEEecc
Confidence 6655555665543
No 51
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=97.80 E-value=2e-05 Score=64.18 Aligned_cols=40 Identities=28% Similarity=0.615 Sum_probs=30.0
Q ss_pred EEEcCC-CchHHHHHHHcC------CCCCCCCCCcccCCcEEEEeeCc
Q 031979 68 EFDAPD-DAYIIDSAEDTG------MELPYSCRAGACSTCAGQMVSGS 108 (149)
Q Consensus 68 ~~~v~~-g~tLLea~~~~G------i~i~~~C~~G~CGtC~v~v~~G~ 108 (149)
++++.+ +.|+|++|..-. +...++|+.|+||+|.++| .|.
T Consensus 65 ~v~~~~~~~tVLd~L~~Ik~~~D~sLsfr~sCr~giCGsCam~I-NG~ 111 (276)
T PLN00129 65 KVDLNDCGPMVLDVLIKIKNEQDPSLTFRRSCREGICGSCAMNI-DGK 111 (276)
T ss_pred EeCCCCCCchHHHHHHHHHHcCCCCeEEeccCCCCCCCCCeeEE-CCc
Confidence 344433 799999997622 4578999999999999975 664
No 52
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=97.77 E-value=4.8e-05 Score=60.32 Aligned_cols=51 Identities=18% Similarity=0.263 Sum_probs=38.2
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccCCceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcc
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGA 96 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~ 96 (149)
...+||+|||.+ |+++++.+.+.|++ ..+.+ ++ ...|+.|.
T Consensus 180 ~~~~vyvCGp~~m~~~v~~~l~~~Gv~-----------~~~~~------------e~---------------~m~cg~G~ 221 (250)
T PRK00054 180 EYDAIYSCGPEIMMKKVVEILKEKKVP-----------AYVSL------------ER---------------RMKCGIGA 221 (250)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCc-----------EEEEE------------cc---------------cccCcCcc
Confidence 346899999999 59999999988773 11222 11 45899999
Q ss_pred cCCcEEEEee
Q 031979 97 CSTCAGQMVS 106 (149)
Q Consensus 97 CGtC~v~v~~ 106 (149)
||+|.+.+..
T Consensus 222 C~~C~~~~~~ 231 (250)
T PRK00054 222 CGACVCDTET 231 (250)
T ss_pred cCcCCcccCC
Confidence 9999998544
No 53
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=97.73 E-value=7.2e-05 Score=55.94 Aligned_cols=50 Identities=22% Similarity=0.411 Sum_probs=42.1
Q ss_pred EEEEcCCCCeEEEEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEeeCc
Q 031979 57 VKLIGPNGEENEFDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMVSGS 108 (149)
Q Consensus 57 V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~~G~ 108 (149)
|+| ..||+..++.++++++|++.+++. |+ ....+|+.|.||.|.|.| +|.
T Consensus 4 i~f-~vNG~~~~~~~~~~~~Ll~~LR~~~~ltgtK~gC~~G~CGACtVlv-dG~ 55 (151)
T TIGR03198 4 FRF-TVNGQAWEVAAVPTTRLSDLLRKELQLTGTKVSCGIGRCGACSVLI-DGK 55 (151)
T ss_pred EEE-EECCEEEEeecCCCcHHHHHHHhccCCCCCCCCCCCCcCCccEEEE-CCc
Confidence 666 368987888889999999999985 76 488999999999999966 664
No 54
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.72 E-value=2.9e-05 Score=61.89 Aligned_cols=51 Identities=22% Similarity=0.460 Sum_probs=36.4
Q ss_pred EEEEcC--C-CchHHHHHHHcC-----CCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEEc
Q 031979 67 NEFDAP--D-DAYIIDSAEDTG-----MELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPT 135 (149)
Q Consensus 67 ~~~~v~--~-g~tLLea~~~~G-----i~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~~ 135 (149)
.+++++ + +.|+|++|..-. +...++|+.|+||+|.++| .|. .+|||+++..
T Consensus 23 ~~y~v~~~~~~~tvld~L~~ik~~d~~l~fr~sCr~giCGsCa~~i-NG~-----------------~~LaC~t~~~ 81 (235)
T PRK12575 23 QRYEIAPRAEDRMLLDVLGRVKAQDETLSYRRSCREGICGSDAMNI-NGR-----------------NGLACLTNMQ 81 (235)
T ss_pred EEEEecCCCCCCcHHHHHHHHHhcCCCeeeeccCCCCCCCCCeeEE-CCe-----------------EcchhhCcHh
Confidence 345554 4 468999996532 4467999999999999975 663 4677777665
No 55
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=97.68 E-value=3.8e-05 Score=60.28 Aligned_cols=41 Identities=27% Similarity=0.571 Sum_probs=34.1
Q ss_pred EEEEcCCCchHHHHHHHcC------CCCCCCCCCcccCCcEEEEeeCc
Q 031979 67 NEFDAPDDAYIIDSAEDTG------MELPYSCRAGACSTCAGQMVSGS 108 (149)
Q Consensus 67 ~~~~v~~g~tLLea~~~~G------i~i~~~C~~G~CGtC~v~v~~G~ 108 (149)
.++++++|+|||++|.+.+ +....+|+.|+||+|.|+| +|.
T Consensus 17 ~~v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~v-nG~ 63 (220)
T TIGR00384 17 YEVPADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNV-NGK 63 (220)
T ss_pred EEEeCCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEE-CCE
Confidence 5677889999999999855 3456899999999999975 664
No 56
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=97.68 E-value=3.2e-05 Score=61.58 Aligned_cols=42 Identities=24% Similarity=0.488 Sum_probs=32.7
Q ss_pred EEEEcCCCchHHHHHHHc------CCCCCCCCCCcccCCcEEEEeeCcc
Q 031979 67 NEFDAPDDAYIIDSAEDT------GMELPYSCRAGACSTCAGQMVSGSV 109 (149)
Q Consensus 67 ~~~~v~~g~tLLea~~~~------Gi~i~~~C~~G~CGtC~v~v~~G~v 109 (149)
.+++..+|.|+|++|..- .+...++||.|+||+|.+.| .|..
T Consensus 22 yev~~~~~~~vLdaL~~Ik~e~d~~Lsfr~sCR~gICGSCam~I-NG~p 69 (234)
T COG0479 22 YEVPYDEGMTVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNI-NGKP 69 (234)
T ss_pred EEecCCCCCcHHHHHHHHHHhcCCccchhhhccCCcCCcceeEE-CCcc
Confidence 345556999999999652 35588999999999999965 6643
No 57
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=97.58 E-value=4.9e-05 Score=61.31 Aligned_cols=35 Identities=6% Similarity=0.020 Sum_probs=30.6
Q ss_pred CCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979 17 RSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA 51 (149)
Q Consensus 17 ~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~ 51 (149)
..+.++|+|||.+ |+++++.|++.|++.+++|+|.
T Consensus 247 ~~~~~vyiCGP~~m~~~~~~~l~~~Gv~~~~i~~e~ 282 (283)
T cd06188 247 PEDIEFYLCGPPPMNSAVIKMLDDLGVPRENIAFDD 282 (283)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCCHHHeeccC
Confidence 3467899999999 6999999999999999988763
No 58
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=97.54 E-value=0.00025 Score=56.16 Aligned_cols=51 Identities=20% Similarity=0.373 Sum_probs=38.7
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccCCceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcc
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGA 96 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~ 96 (149)
.+.+||+|||.+ |+++++.|++.|++ ..+.+ + -...|+.|.
T Consensus 179 ~~~~vyiCGp~~mv~~~~~~L~~~Gv~-----------~~~~~---~------------------------~~~~~~~g~ 220 (246)
T cd06218 179 RPDVVYACGPEPMLKAVAELAAERGVP-----------CQVSL---E------------------------ERMACGIGA 220 (246)
T ss_pred CCCEEEEECCHHHHHHHHHHHHhcCCC-----------EEEEe---c------------------------ccccCccce
Confidence 468999999999 59999999998886 11111 1 124699999
Q ss_pred cCCcEEEEee
Q 031979 97 CSTCAGQMVS 106 (149)
Q Consensus 97 CGtC~v~v~~ 106 (149)
||.|+....+
T Consensus 221 c~~c~~~~~~ 230 (246)
T cd06218 221 CLGCVVKTKD 230 (246)
T ss_pred ecccEEEeec
Confidence 9999998764
No 59
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=97.52 E-value=0.00024 Score=53.31 Aligned_cols=52 Identities=29% Similarity=0.551 Sum_probs=43.1
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEeeCcc
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMVSGSV 109 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~~G~v 109 (149)
.|+| +.||+.+++++.++++||++|++. |+ ...++|+.|.||.|.|. +.|+.
T Consensus 3 ~i~l-tvNG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~~g~CGACtVl-vDG~~ 56 (156)
T COG2080 3 PITL-TVNGEPVELDVDPRTPLLDVLRDELGLTGTKKGCGHGQCGACTVL-VDGEA 56 (156)
T ss_pred cEEE-EECCeEEEEEeCCCChHHHHHHHhcCCCCcCCCCCCccCCceEEE-ECCeE
Confidence 4666 468988999999999999999954 55 48999999999999985 57753
No 60
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=97.51 E-value=7.7e-05 Score=57.47 Aligned_cols=35 Identities=14% Similarity=0.109 Sum_probs=30.1
Q ss_pred CCCCCeEEEcCCch-HHHHHHHHHHcCCCCCccccc
Q 031979 16 PRSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKAS 50 (149)
Q Consensus 16 ~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~ 50 (149)
+....++|+|||.+ |++++++|.+.|+++++|++|
T Consensus 183 ~~~~~~vyiCGp~~m~~~~~~~l~~~G~~~~~i~~E 218 (218)
T cd06196 183 TDFNQHFYVCGPPPMEEAINGALKELGVPEDSIVFE 218 (218)
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHcCCCHHHEecC
Confidence 33457899999999 599999999999999998765
No 61
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=97.49 E-value=8.2e-05 Score=57.71 Aligned_cols=34 Identities=15% Similarity=-0.020 Sum_probs=30.4
Q ss_pred CCCCeEEEcCCch-HHHHHHHHHHcCCCCCccccc
Q 031979 17 RSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKAS 50 (149)
Q Consensus 17 ~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~ 50 (149)
..+.++|+|||.+ |+++++.|++.|+++++||.|
T Consensus 188 ~~~~~v~vCGp~~m~~~~~~~l~~~G~~~~~i~~e 222 (224)
T cd06189 188 LSDFDVYACGSPEMVYAARDDFVEKGLPEENFFSD 222 (224)
T ss_pred ccccEEEEECCHHHHHHHHHHHHHcCCCHHHcccC
Confidence 3567899999999 699999999999999998876
No 62
>PRK08051 fre FMN reductase; Validated
Probab=97.48 E-value=7.6e-05 Score=58.46 Aligned_cols=34 Identities=9% Similarity=0.013 Sum_probs=30.0
Q ss_pred CCCeEEEcCCch-HHHHHHHH-HHcCCCCCcccccC
Q 031979 18 SKKFSLVKSPAS-LGSTRSVS-KAFGLKCSSFKASA 51 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~-~~~g~~~~~f~~~~ 51 (149)
.+.++|+|||.+ |+++++.+ .++|+++++|+.+.
T Consensus 193 ~~~~vyicGp~~m~~~v~~~l~~~~G~~~~~i~~e~ 228 (232)
T PRK08051 193 AEYDIYIAGRFEMAKIARELFCRERGAREEHLFGDA 228 (232)
T ss_pred ccCEEEEECCHHHHHHHHHHHHHHcCCCHHHeeccc
Confidence 457899999999 59999999 99999999988764
No 63
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=97.48 E-value=0.00012 Score=57.38 Aligned_cols=33 Identities=9% Similarity=0.173 Sum_probs=29.3
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHcCCCC------Cccccc
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAFGLKC------SSFKAS 50 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~------~~f~~~ 50 (149)
.+..+|+|||.+ |+++++.|.++|+++ .+||+|
T Consensus 200 ~~~~vyiCGp~~m~~~~~~~l~~~G~~~~~~~~~~~~~~E 239 (241)
T cd06195 200 ETSHVMLCGNPQMIDDTQELLKEKGFSKNHRRKPGNITVE 239 (241)
T ss_pred ccCEEEEeCCHHHHHHHHHHHHHcCCCccccCCCceEEEe
Confidence 567899999999 599999999999998 777776
No 64
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=97.47 E-value=0.0001 Score=56.88 Aligned_cols=36 Identities=11% Similarity=0.054 Sum_probs=31.1
Q ss_pred CCCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979 16 PRSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA 51 (149)
Q Consensus 16 ~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~ 51 (149)
+..+.++|+|||.+ |+++++.|.+.|++.++||.+.
T Consensus 184 ~~~~~~vyicGp~~m~~~~~~~L~~~Gv~~~~i~~e~ 220 (222)
T cd06194 184 LTRDDVVYLCGAPSMVNAVRRRAFLAGAPMKRIYADP 220 (222)
T ss_pred ccCCCEEEEeCCHHHHHHHHHHHHHcCCCHHHeeecc
Confidence 34568899999999 6999999999999999988653
No 65
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=97.45 E-value=0.00014 Score=57.50 Aligned_cols=42 Identities=24% Similarity=0.377 Sum_probs=35.3
Q ss_pred EEEEcC-CCchHHHHHHHcC-CC-----CCCCCCCcccCCcEEEEeeCcc
Q 031979 67 NEFDAP-DDAYIIDSAEDTG-ME-----LPYSCRAGACSTCAGQMVSGSV 109 (149)
Q Consensus 67 ~~~~v~-~g~tLLea~~~~G-i~-----i~~~C~~G~CGtC~v~v~~G~v 109 (149)
++++++ +|+|||++|.+.+ .. ..++|+.|.||+|.|+| +|..
T Consensus 20 ~~v~~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~v-nG~~ 68 (232)
T PRK05950 20 YEVDVDECGPMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNI-NGKN 68 (232)
T ss_pred EEeCCCCCCCHHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEE-CCcC
Confidence 678888 9999999999997 33 36899999999999987 6643
No 66
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=97.45 E-value=9.8e-05 Score=57.86 Aligned_cols=33 Identities=6% Similarity=-0.088 Sum_probs=29.8
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHcCCCCCccccc
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKAS 50 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~ 50 (149)
.+.++|+|||.+ |+++.++|.++|+++++||.|
T Consensus 203 ~~~~vyvCGp~~m~~~~~~~L~~~Gv~~~~i~~e 236 (238)
T cd06211 203 RGHKAYLCGPPPMIDACIKTLMQGRLFERDIYYE 236 (238)
T ss_pred ccCEEEEECCHHHHHHHHHHHHHcCCCHHHcccc
Confidence 467899999999 599999999999999998876
No 67
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=97.45 E-value=9.8e-05 Score=57.48 Aligned_cols=34 Identities=9% Similarity=0.024 Sum_probs=30.2
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA 51 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~ 51 (149)
.+.+||+|||.+ |+++.+.|+++|++.++||.|.
T Consensus 196 ~~~~v~~CGp~~~~~~v~~~l~~~G~~~~~i~~e~ 230 (232)
T cd06212 196 AGCDVYLCGPPPMIDAALPVLEMSGVPPDQIFYDK 230 (232)
T ss_pred cCCEEEEECCHHHHHHHHHHHHHcCCCHHHeeecc
Confidence 467899999999 6999999999999999988763
No 68
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=97.44 E-value=0.00012 Score=56.46 Aligned_cols=36 Identities=11% Similarity=0.112 Sum_probs=31.1
Q ss_pred CCCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979 16 PRSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA 51 (149)
Q Consensus 16 ~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~ 51 (149)
+..+..+|+|||.+ |+++++.|.+.|++.++++.|.
T Consensus 178 ~~~~~~vyicGp~~m~~~v~~~l~~~Gv~~~~I~~E~ 214 (216)
T cd06198 178 DLADADVWFCGPPGMADALEKGLRALGVPARRFHYER 214 (216)
T ss_pred CcCCCeEEEECcHHHHHHHHHHHHHcCCChHhcchhh
Confidence 34567899999999 5999999999999999988763
No 69
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=97.44 E-value=0.00011 Score=57.05 Aligned_cols=34 Identities=9% Similarity=0.186 Sum_probs=30.1
Q ss_pred CCCCeEEEcCCchH-HHHHHHHHHcCCCCCccccc
Q 031979 17 RSKKFSLVKSPASL-GSTRSVSKAFGLKCSSFKAS 50 (149)
Q Consensus 17 ~~~~~~y~CGP~~m-~~v~~~~~~~g~~~~~f~~~ 50 (149)
..+.++|+|||.+| +++++.|++.|++.++++.|
T Consensus 199 ~~~~~v~icGp~~m~~~v~~~l~~~Gv~~~~i~~E 233 (235)
T cd06217 199 LAGRRVYVCGPPAFVEAATRLLLELGVPRDRIRTE 233 (235)
T ss_pred ccCCEEEEECCHHHHHHHHHHHHHcCCCHHHEeec
Confidence 35688999999994 99999999999999998765
No 70
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=97.42 E-value=0.00037 Score=55.20 Aligned_cols=48 Identities=17% Similarity=0.388 Sum_probs=36.4
Q ss_pred CCeEEEcCCch-HHHHHHHHHHcCCCCCcccccCCceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCccc
Q 031979 19 KKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGAC 97 (149)
Q Consensus 19 ~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~C 97 (149)
...+|+|||.+ |+++++.+.+.|++ ..+.+ + -.-.|+.|.|
T Consensus 180 ~~~vyiCGP~~m~~~~~~~l~~~Gv~-----------~~~s~---e------------------------~~m~Cg~G~C 221 (248)
T cd06219 180 VDLVIAIGPPIMMKAVSELTRPYGIP-----------TVVSL---N------------------------PIMVDGTGMC 221 (248)
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCC-----------EEEEe---c------------------------ccccCcccee
Confidence 45799999999 59999999888876 11111 1 1247999999
Q ss_pred CCcEEEE
Q 031979 98 STCAGQM 104 (149)
Q Consensus 98 GtC~v~v 104 (149)
+.|.++.
T Consensus 222 ~~C~~~~ 228 (248)
T cd06219 222 GACRVTV 228 (248)
T ss_pred eeEEEEe
Confidence 9999985
No 71
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=97.40 E-value=0.00012 Score=56.98 Aligned_cols=32 Identities=13% Similarity=0.328 Sum_probs=29.1
Q ss_pred CCeEEEcCCch-HHHHHHHHHHcCCCCCccccc
Q 031979 19 KKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKAS 50 (149)
Q Consensus 19 ~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~ 50 (149)
+.++|+|||.+ |+++++.+.+.|++.+++++|
T Consensus 197 ~~~vyicGp~~mv~~~~~~l~~~G~~~~~i~~E 229 (231)
T cd06191 197 EREAFICGPAGMMDAVETALKELGMPPERIHTE 229 (231)
T ss_pred CCeEEEECCHHHHHHHHHHHHHcCCCHHHeeec
Confidence 57899999999 599999999999999998875
No 72
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=97.39 E-value=0.00013 Score=55.73 Aligned_cols=35 Identities=11% Similarity=0.199 Sum_probs=30.2
Q ss_pred CCCCCeEEEcCCch-HHHHHHHHHHcCCCCCccccc
Q 031979 16 PRSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKAS 50 (149)
Q Consensus 16 ~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~ 50 (149)
+..+..+|+|||.+ |+++++.|.+.|++.++++.|
T Consensus 188 ~~~~~~~yvCGp~~m~~~~~~~L~~~gv~~~~i~~e 223 (223)
T cd00322 188 DDSGALVYICGPPAMAKAVREALVSLGVPEERIHTE 223 (223)
T ss_pred cccCCEEEEECCHHHHHHHHHHHHHcCCCHHHcccC
Confidence 34568899999999 599999999999999888764
No 73
>PRK05713 hypothetical protein; Provisional
Probab=97.38 E-value=0.00012 Score=60.03 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=30.2
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA 51 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~ 51 (149)
.+.++|+|||.+ |+++.+.|.++|+++++||++.
T Consensus 273 ~~~~vyiCGp~~mv~~~~~~L~~~Gv~~~~i~~e~ 307 (312)
T PRK05713 273 RQTMALLCGSPASVERFARRLYLAGLPRNQLLADV 307 (312)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCCHHHeeecc
Confidence 347899999999 5999999999999999998764
No 74
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=97.37 E-value=0.00014 Score=56.32 Aligned_cols=33 Identities=21% Similarity=0.404 Sum_probs=29.3
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHcCCCCCccccc
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKAS 50 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~ 50 (149)
.+.++|+|||.+ |+++++.+.+.|++.++|++|
T Consensus 196 ~~~~v~icGp~~m~~~~~~~l~~~gv~~~~i~~e 229 (231)
T cd06215 196 KERTVFVCGPAGFMKAVKSLLAELGFPMSRFHQE 229 (231)
T ss_pred cCCeEEEECCHHHHHHHHHHHHHcCCCHHHeeee
Confidence 347899999999 599999999999999998765
No 75
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=97.36 E-value=0.00014 Score=61.91 Aligned_cols=35 Identities=9% Similarity=0.031 Sum_probs=31.0
Q ss_pred CCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979 17 RSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA 51 (149)
Q Consensus 17 ~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~ 51 (149)
..+.+||+|||.+ |+++++.+.+.|++++++|++.
T Consensus 371 ~~~~~vyiCGP~~m~~av~~~L~~~Gv~~~~I~~E~ 406 (409)
T PRK05464 371 PEDCEYYMCGPPMMNAAVIKMLKDLGVEDENILLDD 406 (409)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCCHHHEEEcc
Confidence 3467899999999 6999999999999999998764
No 76
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=97.35 E-value=0.00015 Score=56.31 Aligned_cols=36 Identities=14% Similarity=0.144 Sum_probs=30.9
Q ss_pred CCCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979 16 PRSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA 51 (149)
Q Consensus 16 ~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~ 51 (149)
+..+.++|+|||.+ |+++++.+.+.|++.++++.|.
T Consensus 190 ~~~~~~v~icGp~~m~~~~~~~l~~~G~~~~~i~~E~ 226 (228)
T cd06209 190 NDGDVDVYLCGPPPMVDAVRSWLDEQGIEPANFYYEK 226 (228)
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHcCCCHHHEeeec
Confidence 34567899999999 6999999999999999988763
No 77
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=97.33 E-value=0.00017 Score=59.88 Aligned_cols=33 Identities=6% Similarity=-0.042 Sum_probs=29.7
Q ss_pred CCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979 19 KKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA 51 (149)
Q Consensus 19 ~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~ 51 (149)
..+||+|||.+ |+++++.|.++|+++++||.|.
T Consensus 301 ~~~vy~CGp~~mv~~~~~~L~~~Gv~~~~i~~E~ 334 (340)
T PRK11872 301 AFDMYLCGPPPMVEAVKQWLDEQALENYRLYYEK 334 (340)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCCHHHEEEee
Confidence 46899999999 5999999999999999998764
No 78
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=97.32 E-value=0.00016 Score=56.82 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=32.3
Q ss_pred CCCCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979 15 APRSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA 51 (149)
Q Consensus 15 ~~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~ 51 (149)
.+..+.++|+|||.+ |+++++.|.++|++.++|+.|.
T Consensus 205 ~~~~~~~v~icGp~~m~~~v~~~l~~~G~~~~~i~~e~ 242 (247)
T cd06184 205 LLPADADFYLCGPVPFMQAVREGLKALGVPAERIHYEV 242 (247)
T ss_pred cCCCCCEEEEECCHHHHHHHHHHHHHcCCCHHHeeeec
Confidence 456678999999999 5999999999999999988764
No 79
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=97.30 E-value=0.00021 Score=55.05 Aligned_cols=33 Identities=12% Similarity=0.065 Sum_probs=29.6
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHcCCCCCccccc
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKAS 50 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~ 50 (149)
.++++|+|||.+ |+++++.+++.|++.++++.|
T Consensus 189 ~~~~v~vcGp~~~~~~v~~~l~~~G~~~~~i~~e 222 (224)
T cd06187 189 ADHDIYICGPPAMVDATVDALLARGAPPERIHFD 222 (224)
T ss_pred ccCEEEEECCHHHHHHHHHHHHHcCCCHHHeecc
Confidence 468899999999 599999999999999988765
No 80
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=97.28 E-value=0.00017 Score=60.75 Aligned_cols=38 Identities=8% Similarity=0.034 Sum_probs=32.5
Q ss_pred CCCCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccCC
Q 031979 15 APRSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASAM 52 (149)
Q Consensus 15 ~~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~~ 52 (149)
.+..+.++|+|||.+ |+++++.|.+.|+++++||+|..
T Consensus 354 ~~~~~~~vyiCGp~~m~~~v~~~L~~~Gv~~~~I~~E~F 392 (399)
T PRK13289 354 LPDPDADFYFCGPVPFMQFVAKQLLELGVPEERIHYEFF 392 (399)
T ss_pred CCCCCCEEEEECCHHHHHHHHHHHHHcCCCHHHeeeecc
Confidence 333478999999999 59999999999999999988754
No 81
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=97.28 E-value=0.00028 Score=54.01 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=30.0
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA 51 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~ 51 (149)
.+.++|+|||.. |+++++.+.++|++.++++.|.
T Consensus 175 ~~~~vyicGp~~m~~~~~~~l~~~gv~~~~i~~e~ 209 (211)
T cd06185 175 AGTHVYVCGPEGMMDAVRAAAAALGWPEARLHFER 209 (211)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCChhheEeee
Confidence 467999999999 5999999999999999988653
No 82
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=97.28 E-value=0.00022 Score=55.54 Aligned_cols=33 Identities=9% Similarity=0.105 Sum_probs=29.1
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHcCCCCCccccc
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKAS 50 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~ 50 (149)
.+.++|+|||.+ |+++++.+++.|++.++++.|
T Consensus 200 ~~~~vyicGp~~m~~~~~~~l~~~G~~~~~i~~E 233 (236)
T cd06210 200 AKPDIYLCGPPGMVDAAFAAAREAGVPDEQVYLE 233 (236)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHcCCCHHHeeec
Confidence 357899999999 599999999999999888765
No 83
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=97.27 E-value=0.00021 Score=55.55 Aligned_cols=34 Identities=15% Similarity=0.268 Sum_probs=30.1
Q ss_pred CCCCeEEEcCCch-HHHHHHHHHHcCCCCCccccc
Q 031979 17 RSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKAS 50 (149)
Q Consensus 17 ~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~ 50 (149)
..+.++|+|||.+ |+++++.++++|++.++++.|
T Consensus 191 ~~~~~v~~CGp~~~~~~~~~~l~~~G~~~~~i~~e 225 (227)
T cd06213 191 LAATEAYLCGPPAMIDAAIAVLRALGIAREHIHAD 225 (227)
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCHHHEecc
Confidence 4568899999999 599999999999999988765
No 84
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=97.22 E-value=0.00023 Score=60.48 Aligned_cols=34 Identities=6% Similarity=0.022 Sum_probs=30.4
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA 51 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~ 51 (149)
.+++||+|||.+ |+++++.|.++|+++++||++.
T Consensus 368 ~~~~vylCGP~~m~~av~~~L~~~Gv~~~~I~~E~ 402 (405)
T TIGR01941 368 EDCEFYMCGPPMMNAAVIKMLEDLGVERENILLDD 402 (405)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCCHHHEEEec
Confidence 467899999999 5999999999999999998764
No 85
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=97.16 E-value=0.00029 Score=58.12 Aligned_cols=34 Identities=24% Similarity=0.128 Sum_probs=30.4
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA 51 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~ 51 (149)
.+.++|+|||.+ |+++++.|.+.|++.+++|++.
T Consensus 297 ~~~~vy~CGp~~m~~~~~~~l~~~G~~~~~i~~e~ 331 (339)
T PRK07609 297 SGHQVYACGSPVMVYAARDDFVAAGLPAEEFFADA 331 (339)
T ss_pred cCCEEEEECCHHHHHHHHHHHHHcCCCHHHeEEee
Confidence 457899999999 5999999999999999998774
No 86
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=97.16 E-value=0.00053 Score=59.68 Aligned_cols=46 Identities=22% Similarity=0.472 Sum_probs=39.4
Q ss_pred EEEcCCCCeEEE-EcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEE
Q 031979 58 KLIGPNGEENEF-DAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQM 104 (149)
Q Consensus 58 ~~~~~~G~~~~~-~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v 104 (149)
+| ..||+..++ +++++++||+.++++ |+ ....+|+.|.||.|.|.|
T Consensus 2 ~~-~~Ng~~~~~~~~~~~~~ll~~lR~~~~l~g~k~gC~~G~CGaCtv~~ 50 (467)
T TIGR02963 2 RF-FLNGETVTLSDVDPTRTLLDYLREDAGLTGTKEGCAEGDCGACTVVV 50 (467)
T ss_pred EE-EECCEEEEeecCCCCCCHHHHHHHhcCCCCCCcccCCCCCCceEEEE
Confidence 45 368877788 689999999999975 76 599999999999999977
No 87
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=97.11 E-value=0.00089 Score=52.62 Aligned_cols=23 Identities=4% Similarity=-0.041 Sum_probs=20.1
Q ss_pred CCeEEEcCCch-HHHHHHHHHHcC
Q 031979 19 KKFSLVKSPAS-LGSTRSVSKAFG 41 (149)
Q Consensus 19 ~~~~y~CGP~~-m~~v~~~~~~~g 41 (149)
+..+|+|||.+ |+++++.+++.|
T Consensus 178 ~~~v~icGp~~mv~~~~~~l~~~g 201 (243)
T cd06192 178 VDRIIVAGSDIMMKAVVEALDEWL 201 (243)
T ss_pred CCEEEEECCHHHHHHHHHHHHhhc
Confidence 46799999999 599999998876
No 88
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=97.08 E-value=0.00039 Score=53.79 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=28.0
Q ss_pred CCCCeEEEcCCch-HH-HHHHHHHHcCCCCCccc
Q 031979 17 RSKKFSLVKSPAS-LG-STRSVSKAFGLKCSSFK 48 (149)
Q Consensus 17 ~~~~~~y~CGP~~-m~-~v~~~~~~~g~~~~~f~ 48 (149)
..+..+|+|||.+ |+ ++++.|.+.|++.++++
T Consensus 199 ~~~~~~~icGp~~~~~~~~~~~l~~~G~~~~~i~ 232 (234)
T cd06183 199 SEDTLVLVCGPPPMIEGAVKGLLKELGYKKDNVF 232 (234)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHcCCCHHHEE
Confidence 4567899999999 69 99999999999988764
No 89
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=97.07 E-value=0.0006 Score=53.49 Aligned_cols=32 Identities=13% Similarity=0.273 Sum_probs=28.6
Q ss_pred CCCeEEEcCCchH-HHHHHHHHHcCCCCCccccc
Q 031979 18 SKKFSLVKSPASL-GSTRSVSKAFGLKCSSFKAS 50 (149)
Q Consensus 18 ~~~~~y~CGP~~m-~~v~~~~~~~g~~~~~f~~~ 50 (149)
.+..+|+|||.+| ++++++|++.|++ ++++.|
T Consensus 209 ~~~~vyvcGp~~m~~~~~~~l~~~Gv~-~~i~~e 241 (243)
T cd06216 209 ADRQVYACGPPGFLDAAEELLEAAGLA-DRLHTE 241 (243)
T ss_pred ccCeEEEECCHHHHHHHHHHHHHCCCc-cceeec
Confidence 4579999999995 9999999999999 988865
No 90
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=96.98 E-value=0.00066 Score=52.74 Aligned_cols=35 Identities=6% Similarity=0.021 Sum_probs=28.8
Q ss_pred CCCCeEEEcCCch-HHHHHHHHHHcCCC-CCcccccC
Q 031979 17 RSKKFSLVKSPAS-LGSTRSVSKAFGLK-CSSFKASA 51 (149)
Q Consensus 17 ~~~~~~y~CGP~~-m~~v~~~~~~~g~~-~~~f~~~~ 51 (149)
..+.+||+|||.+ |+++.+.+.+.|+. .+++++|.
T Consensus 194 ~~~~~vyiCGp~~m~~~v~~~l~~~g~~~~~~i~~e~ 230 (232)
T cd06190 194 LAEFEFYFAGPPPMVDAVQRMLMIEGVVPFDQIHFDR 230 (232)
T ss_pred ccccEEEEECCHHHHHHHHHHHHHhCCCChHheeecc
Confidence 3468999999999 59999999999865 77887763
No 91
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=96.92 E-value=0.00069 Score=52.84 Aligned_cols=34 Identities=6% Similarity=0.166 Sum_probs=29.9
Q ss_pred CCCCeEEEcCCchH-HHHHHHHHHcCCCCCccccc
Q 031979 17 RSKKFSLVKSPASL-GSTRSVSKAFGLKCSSFKAS 50 (149)
Q Consensus 17 ~~~~~~y~CGP~~m-~~v~~~~~~~g~~~~~f~~~ 50 (149)
..+..||+|||+.| +++.++|++.|+++++|+.|
T Consensus 204 ~~~~~v~icGp~~mv~~v~~~l~~~G~~~~~i~~e 238 (241)
T cd06214 204 TEFDEAFLCGPEPMMDAVEAALLELGVPAERIHRE 238 (241)
T ss_pred ccCcEEEEECCHHHHHHHHHHHHHcCCCHHHeecc
Confidence 45678999999995 99999999999999988765
No 92
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=96.88 E-value=0.0019 Score=60.75 Aligned_cols=52 Identities=17% Similarity=0.186 Sum_probs=42.7
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHHHHcCCC-CCCC-CCCcccCCcEEEEeeCcc
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTGME-LPYS-CRAGACSTCAGQMVSGSV 109 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~-i~~~-C~~G~CGtC~v~v~~G~v 109 (149)
+|+| ..||+.++++++++++||+.|++.|+. ...+ |+.|.||.|.|.| .|..
T Consensus 2 ~i~~-~vNg~~~~~~~~~~~~l~~~LR~~~~~~~k~g~c~~g~CGaCtv~~-dg~~ 55 (956)
T PRK09800 2 IIHF-TLNGAPQELTVNPGENVQKLLFNMGMHSVRNSDDGFGFAGSDAIIF-NGNI 55 (956)
T ss_pred eEEE-EECCEEEEEecCCCCCHHHHHHHCCCCccccCCCCcccCCCCEEEE-CCeE
Confidence 3677 478988889999999999999998864 6666 7899999999965 6643
No 93
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=96.88 E-value=0.00087 Score=52.63 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=28.6
Q ss_pred CCCCeEEEcCCch-HHHHHHHHHH-cCCCCCccccc
Q 031979 17 RSKKFSLVKSPAS-LGSTRSVSKA-FGLKCSSFKAS 50 (149)
Q Consensus 17 ~~~~~~y~CGP~~-m~~v~~~~~~-~g~~~~~f~~~ 50 (149)
..+.++|+|||.+ |+++++.+.+ .|++.++||++
T Consensus 196 ~~~~~vyicGp~~mv~~v~~~l~~~~g~~~~~i~~~ 231 (235)
T cd06193 196 AGDGYVWIAGEAGAVRALRRHLREERGVPRAQVYAS 231 (235)
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHccCCCHHHEEEE
Confidence 4457899999999 5999999976 59999988764
No 94
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=96.61 E-value=0.0015 Score=53.49 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=25.9
Q ss_pred CCeEEEcCCch-HH-HHHHHHHHcCCCCCccc
Q 031979 19 KKFSLVKSPAS-LG-STRSVSKAFGLKCSSFK 48 (149)
Q Consensus 19 ~~~~y~CGP~~-m~-~v~~~~~~~g~~~~~f~ 48 (149)
++.+|+|||.+ |+ ++++.|+++|++.++|+
T Consensus 267 ~~~vyiCGp~~mv~~~~~~~L~~~G~~~~~i~ 298 (300)
T PTZ00319 267 KVMALMCGPPPMLQMAVKPNLEKIGYTADNMF 298 (300)
T ss_pred CeEEEEECCHHHHHHHHHHHHHHcCCCHHHEE
Confidence 47899999999 47 67899999999988865
No 95
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=96.60 E-value=0.0016 Score=51.79 Aligned_cols=31 Identities=10% Similarity=0.101 Sum_probs=26.8
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHcCCCCCccc
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFK 48 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~ 48 (149)
.+.+||+|||.+ |+++++.|.+.|++.+++|
T Consensus 189 ~~~~vyicGp~~mv~~~~~~L~~~Gv~~~~i~ 220 (253)
T cd06221 189 DNTVAIVCGPPIMMRFVAKELLKLGVPEEQIW 220 (253)
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcCCCHHHEE
Confidence 567899999999 5999999999999866655
No 96
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.59 E-value=0.0041 Score=58.43 Aligned_cols=47 Identities=17% Similarity=0.347 Sum_probs=36.4
Q ss_pred CeEEEcCCch-HHHHHHHHHHcCCCCCcccccCCceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccC
Q 031979 20 KFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACS 98 (149)
Q Consensus 20 ~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CG 98 (149)
..||+|||.+ |+++.+.+++.|++. .|.+- . ...|+-|.||
T Consensus 848 ~~Vy~CGP~~Mmkav~~~l~~~Gv~~-----------~vSlE------~---------------------~M~CG~G~C~ 889 (944)
T PRK12779 848 AEVIAIGPPLMMRAVSDLTKPYGVKT-----------VASLN------S---------------------IMVDATGMCG 889 (944)
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCe-----------EEeec------c---------------------cccCCCeeeC
Confidence 5799999999 699999999888861 22221 0 1289999999
Q ss_pred CcEEEE
Q 031979 99 TCAGQM 104 (149)
Q Consensus 99 tC~v~v 104 (149)
.|.+.+
T Consensus 890 ~C~v~~ 895 (944)
T PRK12779 890 ACMVPV 895 (944)
T ss_pred eeeeee
Confidence 999975
No 97
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=96.50 E-value=0.0043 Score=57.70 Aligned_cols=45 Identities=22% Similarity=0.556 Sum_probs=38.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHH-cCC-CCCCCCCCcccCCcEEEEeeCcc
Q 031979 62 PNGEENEFDAPDDAYIIDSAED-TGM-ELPYSCRAGACSTCAGQMVSGSV 109 (149)
Q Consensus 62 ~~G~~~~~~v~~g~tLLea~~~-~Gi-~i~~~C~~G~CGtC~v~v~~G~v 109 (149)
.|| +.++++++++||+.|++ .|+ .+..+|+.|.||.|.|.| +|+.
T Consensus 5 ~ng--~~~~~~~~~~l~~~lr~~~~~~~~k~gc~~g~cgactv~~-dg~~ 51 (848)
T TIGR03311 5 VNG--REVDVNEEKKLLEFLREDLRLTGVKNGCGEGACGACTVIV-NGKA 51 (848)
T ss_pred ECC--EEeeCCCCCcHHHHHHHhcCCCcCCCCCCCCCCCCcEEEE-CCeE
Confidence 578 68899999999999997 486 699999999999999965 6643
No 98
>PLN00192 aldehyde oxidase
Probab=96.50 E-value=0.0048 Score=59.94 Aligned_cols=48 Identities=17% Similarity=0.425 Sum_probs=41.0
Q ss_pred EEEEEcCCCCeEEE-EcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEE
Q 031979 56 KVKLIGPNGEENEF-DAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQM 104 (149)
Q Consensus 56 ~V~~~~~~G~~~~~-~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v 104 (149)
.|+|. .||+..++ ++++++|||+.|+++ |+ ....+|+.|.||.|-|.|
T Consensus 5 ~i~~~-vNg~~~~~~~~~p~~~Ll~~LR~~~~ltgtK~gC~~G~CGaCtV~v 55 (1344)
T PLN00192 5 SLVFA-VNGERFELSSVDPSTTLLEFLRTQTPFKSVKLGCGEGGCGACVVLL 55 (1344)
T ss_pred eEEEE-ECCEEEEeccCCCCCcHHHHHHHhhCCCCcCCCCCCCcCCCcEEEE
Confidence 47774 78977777 588999999999975 76 599999999999999987
No 99
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=96.43 E-value=0.0039 Score=54.84 Aligned_cols=50 Identities=16% Similarity=0.444 Sum_probs=42.5
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC------CcccCCcEEEEee
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR------AGACSTCAGQMVS 106 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~------~G~CGtC~v~v~~ 106 (149)
+-.|.+. .+| +.+.|++|.|+|+|++..|++||--|. .|.|..|.|.|..
T Consensus 30 ~~~ievf-vd~--~~v~v~pg~tvlqac~~~gv~iprfcyh~rlsvagncrmclvevek 85 (708)
T KOG2282|consen 30 PNKIEVF-VDD--QSVMVEPGTTVLQACAKVGVDIPRFCYHERLSVAGNCRMCLVEVEK 85 (708)
T ss_pred ccceEEE-ECC--eeEeeCCCcHHHHHHHHhCCCcchhhhhhhhhhccceeEEEEEecc
Confidence 3456664 578 889999999999999999999999998 5889999888754
No 100
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=96.27 E-value=0.0065 Score=57.17 Aligned_cols=47 Identities=15% Similarity=0.127 Sum_probs=39.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHcCCC-CCC-CCCCcccCCcEEEEeeCcc
Q 031979 62 PNGEENEFDAPDDAYIIDSAEDTGME-LPY-SCRAGACSTCAGQMVSGSV 109 (149)
Q Consensus 62 ~~G~~~~~~v~~g~tLLea~~~~Gi~-i~~-~C~~G~CGtC~v~v~~G~v 109 (149)
.||+.++++++++++||+.|++.|+. +.. +|+.|.||.|.|.| .|..
T Consensus 3 ~Ng~~~~~~~~~~~~l~~~LR~~~l~~~k~~~c~~g~CGaCtv~~-dg~~ 51 (951)
T TIGR03313 3 LNGAPQTLECKLGENVQTLLFNMGMHSVRNSDDGFGFAGSDAILF-NGVL 51 (951)
T ss_pred ECCEEEEEecCCCCCHHHHHHHCCCCCCcCCCCCcccCCCCEEEE-CCeE
Confidence 47877889999999999999998874 777 69999999999965 6753
No 101
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.20 E-value=0.011 Score=54.13 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=21.1
Q ss_pred CeEEEcCCch-HHHHHHHHHHcCCC
Q 031979 20 KFSLVKSPAS-LGSTRSVSKAFGLK 43 (149)
Q Consensus 20 ~~~y~CGP~~-m~~v~~~~~~~g~~ 43 (149)
..+|+|||.+ |+++.+++.+.|++
T Consensus 182 ~~vy~CGP~~M~~~v~~~l~~~gv~ 206 (752)
T PRK12778 182 DKVFAIGPAIMMKFVCLLTKKYGIP 206 (752)
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCC
Confidence 5799999999 59999999888875
No 102
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=96.13 E-value=0.0071 Score=58.71 Aligned_cols=49 Identities=16% Similarity=0.440 Sum_probs=39.7
Q ss_pred EEEEEcCCCCeE-EEEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEe
Q 031979 56 KVKLIGPNGEEN-EFDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMV 105 (149)
Q Consensus 56 ~V~~~~~~G~~~-~~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~ 105 (149)
.|+|. .||+.. ..++++++|||+.|++. |+ ....+|+.|.||.|-|.|-
T Consensus 2 ~~~~~-~Ng~~~~~~~~~~~~~ll~~LR~~~~l~gtk~gC~~G~CGaCtV~~~ 53 (1330)
T TIGR02969 2 ELLFY-VNGRKVVEKNVDPETMLLPYLRKKLRLTGTKYGCGGGGCGACTVMIS 53 (1330)
T ss_pred cEEEE-ECCEEEEeccCCCCCcHHHHHHhhcCCCCCCCCcCCCCCCCcEEEEC
Confidence 46673 688553 34789999999999974 76 5999999999999999763
No 103
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=95.93 E-value=0.0091 Score=56.48 Aligned_cols=24 Identities=17% Similarity=0.468 Sum_probs=20.8
Q ss_pred CeEEEcCCch-HHHHHHHHHHcCCC
Q 031979 20 KFSLVKSPAS-LGSTRSVSKAFGLK 43 (149)
Q Consensus 20 ~~~y~CGP~~-m~~v~~~~~~~g~~ 43 (149)
..+|+|||.+ |+++.++++..|++
T Consensus 182 d~vy~CGP~~Mm~av~~~~~~~gi~ 206 (1006)
T PRK12775 182 DLVVAIGPLPMMNACVETTRPFGVK 206 (1006)
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCc
Confidence 4799999999 69999999887775
No 104
>PRK05802 hypothetical protein; Provisional
Probab=95.90 E-value=0.013 Score=48.49 Aligned_cols=20 Identities=0% Similarity=-0.247 Sum_probs=17.6
Q ss_pred CeEEEcCCch-HHHHHHHHHH
Q 031979 20 KFSLVKSPAS-LGSTRSVSKA 39 (149)
Q Consensus 20 ~~~y~CGP~~-m~~v~~~~~~ 39 (149)
..||+|||.. |+++.+.+.+
T Consensus 255 ~~vy~CGP~~M~k~v~~~l~~ 275 (320)
T PRK05802 255 NLIHCGGSDILHYKIIEYLDK 275 (320)
T ss_pred CEEEEECCHHHHHHHHHHHhh
Confidence 5699999999 5999998876
No 105
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=95.81 E-value=0.0067 Score=58.12 Aligned_cols=33 Identities=9% Similarity=0.136 Sum_probs=28.9
Q ss_pred CCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccc
Q 031979 17 RSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKA 49 (149)
Q Consensus 17 ~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~ 49 (149)
..+.++|+|||.+ |+++++.|+++|++.++||.
T Consensus 1127 ~~~~~vyiCGP~~mv~~v~~~L~~~G~~~~~I~~ 1160 (1167)
T PTZ00306 1127 SKDLLVAICGPPVMQRAVKADLLALGYNMELVRT 1160 (1167)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCCHHHeEE
Confidence 3567899999999 59999999999999988864
No 106
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=95.36 E-value=0.017 Score=46.75 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=21.6
Q ss_pred CCeEEEcCCch-HHHHHHHHHHcCCC
Q 031979 19 KKFSLVKSPAS-LGSTRSVSKAFGLK 43 (149)
Q Consensus 19 ~~~~y~CGP~~-m~~v~~~~~~~g~~ 43 (149)
...||+|||.+ |+++.+.+.+.|++
T Consensus 181 ~~~vy~CGP~~M~~~v~~~l~~~gv~ 206 (281)
T PRK06222 181 VDRVVAIGPVIMMKFVAELTKPYGIK 206 (281)
T ss_pred CcEEEEECCHHHHHHHHHHHHhcCCC
Confidence 45799999999 59999999888875
No 107
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=95.19 E-value=0.015 Score=49.58 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=27.9
Q ss_pred CeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979 20 KFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA 51 (149)
Q Consensus 20 ~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~ 51 (149)
+.||+|||.+ |++++..++..++|-.+||.|.
T Consensus 402 ~sv~fCGP~~m~dsL~r~l~~~~~~i~~~h~E~ 434 (438)
T COG4097 402 RSVFFCGPIKMMDSLRRDLKKQNVPITNFHYEH 434 (438)
T ss_pred ceEEEEcCHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 4799999999 6999999999999987777653
No 108
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=94.77 E-value=0.029 Score=46.15 Aligned_cols=47 Identities=9% Similarity=0.046 Sum_probs=39.4
Q ss_pred ecccccccccCCCCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979 5 RLPTSCLFQAAPRSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA 51 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~ 51 (149)
|+-..-+|........++|.|||.. |+++++.|.++|+.++.++.|.
T Consensus 332 ~iI~~~~L~~~~~s~~DiY~~G~~~~M~~~~~~L~~L~~~~~~v~~E~ 379 (385)
T KOG3378|consen 332 RIINEEDLEKLDLSECDIYMLGPNNYMRFVKQELVKLGVEPNKVQSEF 379 (385)
T ss_pred hhcCHHHhhhcChhhCceeeeCcHHHHHHHHHHHHHhcCCccceeccc
Confidence 4444557788888999999999999 9999999999999888776553
No 109
>PLN02252 nitrate reductase [NADPH]
Probab=94.42 E-value=0.032 Score=52.28 Aligned_cols=31 Identities=13% Similarity=0.269 Sum_probs=25.8
Q ss_pred CCCeEEEcCCchH-H-HHHHHHHHcCCCCCccc
Q 031979 18 SKKFSLVKSPASL-G-STRSVSKAFGLKCSSFK 48 (149)
Q Consensus 18 ~~~~~y~CGP~~m-~-~v~~~~~~~g~~~~~f~ 48 (149)
.+..+|+|||.+| + +++..|+++|++.++++
T Consensus 854 ~~~~vyiCGPp~Mi~~av~~~L~~~G~~~~~I~ 886 (888)
T PLN02252 854 DETLALMCGPPPMIEFACQPNLEKMGYDKDSIL 886 (888)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHcCCCHHHEE
Confidence 4567999999995 6 58889999999988754
No 110
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=94.31 E-value=0.052 Score=42.98 Aligned_cols=29 Identities=7% Similarity=0.111 Sum_probs=22.3
Q ss_pred CCCeEEEcCCch-HHHHHHHHHH-cCCCCCcc
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKA-FGLKCSSF 47 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~-~g~~~~~f 47 (149)
.+..+|+|||.+ |+++++.|.+ .|+ .++.
T Consensus 205 ~~~~vy~CGp~~Mv~~~~~~l~~~~~~-~~~~ 235 (248)
T PRK10926 205 ETSHVMLCGNPQMVRDTQQLLKETRQM-TKHL 235 (248)
T ss_pred cCCEEEEECCHHHHHHHHHHHHHhcCc-cccc
Confidence 457899999999 5999999865 556 3443
No 111
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=94.10 E-value=0.049 Score=45.16 Aligned_cols=35 Identities=11% Similarity=0.104 Sum_probs=29.5
Q ss_pred cCCCCCCeEEEcCCchH-HHHHHHHHHcCCCCCccc
Q 031979 14 AAPRSKKFSLVKSPASL-GSTRSVSKAFGLKCSSFK 48 (149)
Q Consensus 14 ~~~~~~~~~y~CGP~~m-~~v~~~~~~~g~~~~~f~ 48 (149)
-..+.+..+|+|||+-| .+|.++|.+.|+-.+++-
T Consensus 369 h~aPEDceyYmCGPp~mNasvikmL~dlGVE~enIl 404 (410)
T COG2871 369 HEAPEDCEYYMCGPPLMNASVIKMLKDLGVERENIL 404 (410)
T ss_pred CCCchheeEEeeCcchhhHHHHHHHHhcCcccccee
Confidence 34566789999999998 789999999999888764
No 112
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=94.05 E-value=0.042 Score=46.57 Aligned_cols=24 Identities=0% Similarity=0.140 Sum_probs=18.3
Q ss_pred CCCCeEEEcCCchH-HHHHHHHHHc
Q 031979 17 RSKKFSLVKSPASL-GSTRSVSKAF 40 (149)
Q Consensus 17 ~~~~~~y~CGP~~m-~~v~~~~~~~ 40 (149)
..+.++|+|||.+| +.|.+++.+.
T Consensus 317 ~~~~~vYiCGp~~M~~~V~~~l~~l 341 (367)
T PLN03115 317 KDNTYVYMCGLKGMEKGIDDIMVSL 341 (367)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 45689999999985 7777776543
No 113
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=94.00 E-value=0.057 Score=44.36 Aligned_cols=28 Identities=11% Similarity=0.307 Sum_probs=23.3
Q ss_pred CCeEEEcCCchH-H-HHHHHHHHcCCCCCc
Q 031979 19 KKFSLVKSPASL-G-STRSVSKAFGLKCSS 46 (149)
Q Consensus 19 ~~~~y~CGP~~m-~-~v~~~~~~~g~~~~~ 46 (149)
...+++|||++| + ++...++.+||+.++
T Consensus 253 ~~~~liCGPp~m~~~~~~~~le~Lg~~~~~ 282 (286)
T KOG0534|consen 253 ETLVLICGPPPMINGAAQGNLEKLGYNEDQ 282 (286)
T ss_pred CeEEEEECCHHHHhHHHHHHHHhcCCChHh
Confidence 688999999996 5 577788889998765
No 114
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=93.82 E-value=0.035 Score=46.90 Aligned_cols=28 Identities=14% Similarity=0.005 Sum_probs=22.8
Q ss_pred CCCeEEEcCCchH-HHHHHHHHHcCCCCC
Q 031979 18 SKKFSLVKSPASL-GSTRSVSKAFGLKCS 45 (149)
Q Consensus 18 ~~~~~y~CGP~~m-~~v~~~~~~~g~~~~ 45 (149)
.+.++|+|||.+| ++|++.+.+.+....
T Consensus 327 ~~~~vyiCGp~~M~~~v~~~L~~i~~~~~ 355 (384)
T cd06206 327 QGARVYVCGDGRMAPGVREVLKRIYAEKD 355 (384)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHHHHhC
Confidence 5688999999995 999999988766543
No 115
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=93.70 E-value=0.049 Score=44.02 Aligned_cols=23 Identities=0% Similarity=-0.081 Sum_probs=19.2
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHc
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAF 40 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~ 40 (149)
.+..+|+|||.+ |+++++.|.+.
T Consensus 238 ~~~~vYiCGp~~m~~~v~~~L~~~ 261 (286)
T cd06208 238 DNTHVYICGLKGMEPGVDDALTSV 261 (286)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHH
Confidence 456899999999 59999988763
No 116
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=93.43 E-value=0.074 Score=42.77 Aligned_cols=23 Identities=9% Similarity=-0.003 Sum_probs=19.6
Q ss_pred CCCeEEEcCCch-H-HHHHHHHHHc
Q 031979 18 SKKFSLVKSPAS-L-GSTRSVSKAF 40 (149)
Q Consensus 18 ~~~~~y~CGP~~-m-~~v~~~~~~~ 40 (149)
.+..||+|||.+ | +++.++|.+.
T Consensus 213 ~~~~vyvCGp~~~m~~~v~~~L~~~ 237 (267)
T cd06182 213 EGAHIYVCGDAKSMAKDVEDALVKI 237 (267)
T ss_pred cCCEEEEECCcccchHHHHHHHHHH
Confidence 345899999999 7 8999998877
No 117
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=93.42 E-value=0.27 Score=46.53 Aligned_cols=73 Identities=10% Similarity=0.057 Sum_probs=53.5
Q ss_pred eEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCC-----C------CCCCcccCCcEEEEeeCcccCCCCCCCChhhcc
Q 031979 55 YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELP-----Y------SCRAGACSTCAGQMVSGSVDQSDGSFLDDKQME 123 (149)
Q Consensus 55 ~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~-----~------~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~ 123 (149)
-.|+|. .|| +.+++.+|+||..||..+|+.+- + -|..|.|-.|.|.|-.|...
T Consensus 11 ~~~~~~-~dg--~~~~~~~g~t~a~al~a~g~~~~~~s~~~~~prg~~c~~~~~~~c~v~i~~~~~~------------- 74 (985)
T TIGR01372 11 RPLRFT-FDG--KSYSGFAGDTLASALLANGVHLVGRSFKYHRPRGILTAGVEEPNALVTVGSGAQR------------- 74 (985)
T ss_pred CeEEEE-ECC--EEeecCCCCHHHHHHHhCCCeeecccCCCCCCCcccccCccCCCeEEEECCCcCC-------------
Confidence 356773 689 89999999999999999997632 1 36677789999998443110
Q ss_pred CCeEEeeeeEEcCCeEEEec
Q 031979 124 KGFVLTCVAYPTSDCVIYTH 143 (149)
Q Consensus 124 ~g~~LaCq~~~~~d~~I~~~ 143 (149)
...+.+|+......|.|+..
T Consensus 75 ~~~~~ac~~~~~~gm~~~~~ 94 (985)
T TIGR01372 75 EPNTRATTQELYDGLVATSQ 94 (985)
T ss_pred CCCccceeEEcccCCEEecc
Confidence 01255888888888888764
No 118
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=93.24 E-value=0.086 Score=41.68 Aligned_cols=21 Identities=10% Similarity=-0.010 Sum_probs=17.6
Q ss_pred CCeEEEcCCc-hH-HHHHHHHHH
Q 031979 19 KKFSLVKSPA-SL-GSTRSVSKA 39 (149)
Q Consensus 19 ~~~~y~CGP~-~m-~~v~~~~~~ 39 (149)
+.++|+|||. +| +++++.+.+
T Consensus 202 ~~~vy~CGp~~~m~~~v~~~l~~ 224 (245)
T cd06200 202 GAAIYVCGSLQGMAPGVDAVLDE 224 (245)
T ss_pred CcEEEEECCchhhhHHHHHHHHH
Confidence 5789999999 85 999888764
No 119
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=93.19 E-value=0.084 Score=43.26 Aligned_cols=22 Identities=5% Similarity=-0.052 Sum_probs=16.9
Q ss_pred CCCeEEEcCCch-HHHHHHHHHH
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKA 39 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~ 39 (149)
.+.++|+|||.+ |+++++.+.+
T Consensus 258 ~~~~vYiCGp~~mv~~v~~~L~~ 280 (307)
T PLN03116 258 NGAHIYFCGLKGMMPGIQDTLKR 280 (307)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHH
Confidence 468899999998 5777666644
No 120
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=92.50 E-value=0.12 Score=41.93 Aligned_cols=22 Identities=9% Similarity=0.010 Sum_probs=18.1
Q ss_pred CCCeEEEcCCch-HHHHHHHHHH
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKA 39 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~ 39 (149)
.+..+|+|||.+ |+++.+.|.+
T Consensus 244 ~~~~vyiCGp~~M~~~v~~~L~~ 266 (289)
T cd06201 244 DGAQIMVCGSRAMAQGVAAVLEE 266 (289)
T ss_pred CCcEEEEECCHHHHHHHHHHHHH
Confidence 467899999998 4888887765
No 121
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=92.49 E-value=0.14 Score=40.70 Aligned_cols=31 Identities=29% Similarity=0.695 Sum_probs=24.8
Q ss_pred CchHHHHHHHc--CCC----CCCCCCCcccCCcEEEE
Q 031979 74 DAYIIDSAEDT--GME----LPYSCRAGACSTCAGQM 104 (149)
Q Consensus 74 g~tLLea~~~~--Gi~----i~~~C~~G~CGtC~v~v 104 (149)
|--+|||+.+- .++ ..-+||.|+||+|...+
T Consensus 76 GpMvLDALiKIKnE~DptLTFRRSCREGICGSCAMNI 112 (288)
T KOG3049|consen 76 GPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNI 112 (288)
T ss_pred chHHHHHHHHhhcccCCceehhhhhhccccccceecc
Confidence 67899999763 333 56799999999999875
No 122
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=92.28 E-value=0.13 Score=44.03 Aligned_cols=24 Identities=0% Similarity=0.023 Sum_probs=18.9
Q ss_pred CCCeEEEcCCchH-HHHHHHHHHcC
Q 031979 18 SKKFSLVKSPASL-GSTRSVSKAFG 41 (149)
Q Consensus 18 ~~~~~y~CGP~~m-~~v~~~~~~~g 41 (149)
.+.+||+|||.+| +++.+.|.+.+
T Consensus 362 ~~~~vYiCGp~~M~~~v~~~L~~~~ 386 (411)
T TIGR03224 362 PNTYIYICGLKGMEEGVLDAFRDVC 386 (411)
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHH
Confidence 3578999999986 88888776653
No 123
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=92.05 E-value=0.14 Score=43.77 Aligned_cols=23 Identities=9% Similarity=0.065 Sum_probs=18.1
Q ss_pred CCCCeEEEcCCchH-HHHHHHHHH
Q 031979 17 RSKKFSLVKSPASL-GSTRSVSKA 39 (149)
Q Consensus 17 ~~~~~~y~CGP~~m-~~v~~~~~~ 39 (149)
..+.++|+|||..| ++|++.+.+
T Consensus 348 ~~~~~iYvCG~~~M~~~V~~~L~~ 371 (406)
T cd06202 348 REGGHIYVCGDVTMAEDVSQTIQR 371 (406)
T ss_pred hCCCEEEEeCCCchHHHHHHHHHH
Confidence 35788999999985 888877754
No 124
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=91.57 E-value=0.46 Score=40.81 Aligned_cols=50 Identities=22% Similarity=0.483 Sum_probs=38.4
Q ss_pred eeEEEEEcCCCCeEE-EEcCCCchHHHHHH-HcCC-CCCCCCCCcccCCcEEEE
Q 031979 54 VYKVKLIGPNGEENE-FDAPDDAYIIDSAE-DTGM-ELPYSCRAGACSTCAGQM 104 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~-~~v~~g~tLLea~~-~~Gi-~i~~~C~~G~CGtC~v~v 104 (149)
+.+|.|+ .||..+. -.+++..|||+.++ ..++ .-.-+|..|-||.|.|-|
T Consensus 6 ~~~irf~-lN~~~~~l~~v~P~~TlLd~LR~d~~ltGtKEGCAEGDCGACTVlV 58 (493)
T COG4630 6 RNTIRFL-LNGETRVLSDVPPTTTLLDYLRLDRRLTGTKEGCAEGDCGACTVLV 58 (493)
T ss_pred cceeEEE-ecCceEEeecCCcchHHHHHHHHhcccccccccccCCCcCceEEEE
Confidence 3567775 5675444 34688999999998 5666 478899999999999865
No 125
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=91.29 E-value=0.15 Score=38.74 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=21.0
Q ss_pred EEEcCCchH-HHHHHHHHHcCCCCCcccc
Q 031979 22 SLVKSPASL-GSTRSVSKAFGLKCSSFKA 49 (149)
Q Consensus 22 ~y~CGP~~m-~~v~~~~~~~g~~~~~f~~ 49 (149)
||+|||.+| ++++..+.+.+....+||.
T Consensus 179 v~~CGp~~~~~~~~~~~~~~~~~~~~~~~ 207 (210)
T cd06186 179 VVVCGPPGLVDDVRNAVAKKGGTGVEFHE 207 (210)
T ss_pred EEEECchhhccHHHHHHhhcCCCceEEEe
Confidence 799999996 8999988775555444554
No 126
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=91.03 E-value=0.19 Score=42.19 Aligned_cols=22 Identities=9% Similarity=-0.044 Sum_probs=17.9
Q ss_pred CCCeEEEcCCc-hH-HHHHHHHHH
Q 031979 18 SKKFSLVKSPA-SL-GSTRSVSKA 39 (149)
Q Consensus 18 ~~~~~y~CGP~-~m-~~v~~~~~~ 39 (149)
.+.++|+|||+ .| ++|++++.+
T Consensus 306 ~~~~vYvCG~~~~M~~~V~~~L~~ 329 (360)
T cd06199 306 EGAHFYVCGDAKRMAKDVDAALLD 329 (360)
T ss_pred CCCEEEEECCCccccHHHHHHHHH
Confidence 46889999999 57 888887754
No 127
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=90.77 E-value=0.2 Score=42.87 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=18.6
Q ss_pred CCCeEEEcCCch-H-HHHHHHHHHc
Q 031979 18 SKKFSLVKSPAS-L-GSTRSVSKAF 40 (149)
Q Consensus 18 ~~~~~y~CGP~~-m-~~v~~~~~~~ 40 (149)
.+.+||+|||.. | ++|++.|.+.
T Consensus 362 ~~~~vYvCGp~~~M~~~V~~~L~~i 386 (416)
T cd06204 362 EGAYIYVCGDAKNMARDVEKTLLEI 386 (416)
T ss_pred cCCEEEEECCcccchHHHHHHHHHH
Confidence 458899999997 8 8888887653
No 128
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=90.60 E-value=0.16 Score=42.93 Aligned_cols=24 Identities=8% Similarity=-0.060 Sum_probs=20.3
Q ss_pred CeEEEcCCch-H-HHHHHHHHHcCCC
Q 031979 20 KFSLVKSPAS-L-GSTRSVSKAFGLK 43 (149)
Q Consensus 20 ~~~y~CGP~~-m-~~v~~~~~~~g~~ 43 (149)
..||+|||.. | ++|++.+.+.+..
T Consensus 330 ~~vYvCG~~~~M~~~V~~~L~~~~~~ 355 (382)
T cd06207 330 GVIYVCGSTWKMPPDVQEAFEEILKK 355 (382)
T ss_pred CEEEEECCcccccHHHHHHHHHHHHH
Confidence 4899999998 8 8999999877554
No 129
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=90.29 E-value=0.32 Score=38.79 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=24.8
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHcCCCCCc
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSS 46 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~ 46 (149)
....+|+|||.. |+++.+.+.+.|++...
T Consensus 191 ~~~~v~~cGp~~M~~~v~~~~~~~g~~~~~ 220 (252)
T COG0543 191 EVDDVYICGPPAMVKAVREKLKEYGVPISA 220 (252)
T ss_pred cCCEEEEECCHHHHHHHHHHHHhcCCchhh
Confidence 568999999999 59999999999987543
No 130
>PRK06214 sulfite reductase; Provisional
Probab=89.93 E-value=0.3 Score=43.41 Aligned_cols=22 Identities=9% Similarity=-0.043 Sum_probs=17.9
Q ss_pred CCCeEEEcCCch-H-HHHHHHHHH
Q 031979 18 SKKFSLVKSPAS-L-GSTRSVSKA 39 (149)
Q Consensus 18 ~~~~~y~CGP~~-m-~~v~~~~~~ 39 (149)
.+.+||+|||.. | ++|++.|.+
T Consensus 476 ~~a~iYVCGp~~~M~~~V~~~L~~ 499 (530)
T PRK06214 476 EGAHFYVCGDAKRMAKDVERALVD 499 (530)
T ss_pred CCcEEEEeCChHHHHHHHHHHHHH
Confidence 468999999987 8 888887754
No 131
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=89.86 E-value=0.3 Score=41.53 Aligned_cols=22 Identities=18% Similarity=0.046 Sum_probs=17.6
Q ss_pred CCCeEEEcCCch-H-HHHHHHHHH
Q 031979 18 SKKFSLVKSPAS-L-GSTRSVSKA 39 (149)
Q Consensus 18 ~~~~~y~CGP~~-m-~~v~~~~~~ 39 (149)
.+..+|+|||+. | ++|++++.+
T Consensus 344 ~~~~iYvCG~~~~M~~~V~~~l~~ 367 (398)
T cd06203 344 SNAKIYVCGDAKGMAKDVRDTFVD 367 (398)
T ss_pred CCcEEEEECCcchhhHHHHHHHHH
Confidence 468899999975 8 788887763
No 132
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=89.17 E-value=0.6 Score=44.84 Aligned_cols=44 Identities=23% Similarity=0.423 Sum_probs=33.4
Q ss_pred CCCCeEE-EEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEe
Q 031979 62 PNGEENE-FDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMV 105 (149)
Q Consensus 62 ~~G~~~~-~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~ 105 (149)
.+|+..+ -.++++.||+..++.+ ++ ....+|+.|.||.|.|-+-
T Consensus 7 VNG~~~~~~~vdP~~TL~~fLR~k~~ltgtKlgC~EGGCGaCtv~ls 53 (1257)
T KOG0430|consen 7 INGKRVEVELLPPDLTLNTFLREKLGLTGTKLGCGEGGCGACTVVLS 53 (1257)
T ss_pred ECCEEeeEecCCcchhHHHHHHHhcCCcceeeccCCCCccceEEEEe
Confidence 5663222 2367899999999875 55 4899999999999999653
No 133
>PLN02906 xanthine dehydrogenase
Probab=88.33 E-value=0.5 Score=46.27 Aligned_cols=32 Identities=19% Similarity=0.552 Sum_probs=28.1
Q ss_pred CchHHHHHHHcCC-CCCCCCCCcccCCcEEEEe
Q 031979 74 DAYIIDSAEDTGM-ELPYSCRAGACSTCAGQMV 105 (149)
Q Consensus 74 g~tLLea~~~~Gi-~i~~~C~~G~CGtC~v~v~ 105 (149)
++|||+.|++.|+ ....+|+.|.||.|.|.|-
T Consensus 1 ~~~ll~~LR~~~l~g~k~gC~~g~CGaCtv~~~ 33 (1319)
T PLN02906 1 HQTLLEYLRDLGLTGTKLGCGEGGCGACTVMVS 33 (1319)
T ss_pred CCcHHHHHHhCCCCCCCCCcCCCCCCCeEEEEC
Confidence 4689999999776 5999999999999999774
No 134
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=87.34 E-value=0.49 Score=42.62 Aligned_cols=22 Identities=9% Similarity=-0.007 Sum_probs=17.3
Q ss_pred CCCeEEEcCCch-H-HHHHHHHHH
Q 031979 18 SKKFSLVKSPAS-L-GSTRSVSKA 39 (149)
Q Consensus 18 ~~~~~y~CGP~~-m-~~v~~~~~~ 39 (149)
.++++|+|||.. | ++|++++.+
T Consensus 546 ~ga~~YVCG~~~~M~~~V~~~L~~ 569 (600)
T PRK10953 546 DGAHIYVCGDANRMAKDVEQALLE 569 (600)
T ss_pred CCcEEEEECCCccchHHHHHHHHH
Confidence 578999999986 8 777776643
No 135
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=87.17 E-value=1.1 Score=29.28 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=20.7
Q ss_pred EcCCCCeEEEEcCCCchHHHHHHH
Q 031979 60 IGPNGEENEFDAPDDAYIIDSAED 83 (149)
Q Consensus 60 ~~~~G~~~~~~v~~g~tLLea~~~ 83 (149)
..+||+...+.+.+|+||.|++++
T Consensus 5 ~LPng~~t~V~vrpg~ti~d~L~~ 28 (72)
T cd01760 5 YLPNGQRTVVPVRPGMSVRDVLAK 28 (72)
T ss_pred ECcCCCeEEEEECCCCCHHHHHHH
Confidence 348998889999999999998865
No 136
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=84.96 E-value=0.75 Score=41.32 Aligned_cols=23 Identities=4% Similarity=-0.035 Sum_probs=18.1
Q ss_pred CCCeEEEcC-CchH-HHHHHHHHHc
Q 031979 18 SKKFSLVKS-PASL-GSTRSVSKAF 40 (149)
Q Consensus 18 ~~~~~y~CG-P~~m-~~v~~~~~~~ 40 (149)
.+.++|+|| |..| ++|+++|.+.
T Consensus 543 ~~a~vYvCG~~~~M~~~V~~~L~~i 567 (597)
T TIGR01931 543 EGAHIYVCGDAKKMAKDVHQALLDI 567 (597)
T ss_pred CCcEEEEECCCccccHHHHHHHHHH
Confidence 468999999 6667 8888887654
No 137
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=84.92 E-value=0.57 Score=38.98 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=12.6
Q ss_pred CCeEEEcCCch-HHHH
Q 031979 19 KKFSLVKSPAS-LGST 33 (149)
Q Consensus 19 ~~~~y~CGP~~-m~~v 33 (149)
+.++|+|||.+ |+++
T Consensus 263 ~~~vylCGPp~Mm~av 278 (325)
T PTZ00274 263 KKIIMLCGPDQLLNHV 278 (325)
T ss_pred CcEEEEeCCHHHHHHh
Confidence 36799999999 5877
No 138
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=82.95 E-value=0.76 Score=26.67 Aligned_cols=17 Identities=35% Similarity=0.913 Sum_probs=13.8
Q ss_pred CCCCcccCCcEEEEeeC
Q 031979 91 SCRAGACSTCAGQMVSG 107 (149)
Q Consensus 91 ~C~~G~CGtC~v~v~~G 107 (149)
.|+.|.|+.|.+....+
T Consensus 5 ~CG~G~C~~C~v~~~~~ 21 (40)
T PF10418_consen 5 ACGVGACGGCVVPVKDG 21 (40)
T ss_dssp SSSSSSS-TTEEECSST
T ss_pred cCCCcEeCCcEeeeecC
Confidence 69999999999987654
No 139
>smart00455 RBD Raf-like Ras-binding domain.
Probab=81.98 E-value=2.7 Score=27.15 Aligned_cols=23 Identities=9% Similarity=0.136 Sum_probs=20.1
Q ss_pred cCCCCeEEEEcCCCchHHHHHHH
Q 031979 61 GPNGEENEFDAPDDAYIIDSAED 83 (149)
Q Consensus 61 ~~~G~~~~~~v~~g~tLLea~~~ 83 (149)
.++|+...+.+.+|+||.|+++.
T Consensus 6 LP~~~~~~V~vrpg~tl~e~L~~ 28 (70)
T smart00455 6 LPDNQRTVVKVRPGKTVRDALAK 28 (70)
T ss_pred CCCCCEEEEEECCCCCHHHHHHH
Confidence 48998889999999999998865
No 140
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=79.79 E-value=1.4 Score=34.86 Aligned_cols=28 Identities=18% Similarity=0.560 Sum_probs=22.2
Q ss_pred hHHHHHHHcCCC---C------CCCCCCcccCCcEEE
Q 031979 76 YIIDSAEDTGME---L------PYSCRAGACSTCAGQ 103 (149)
Q Consensus 76 tLLea~~~~Gi~---i------~~~C~~G~CGtC~v~ 103 (149)
.+.+++++.|++ + .-.|+.|.||+|++.
T Consensus 204 ~~~~~L~~~Gv~~~~i~~~~~~~~~~~~g~c~~c~~~ 240 (253)
T cd06221 204 FVAKELLKLGVPEEQIWVSLERRMKCGVGKCGHCQIG 240 (253)
T ss_pred HHHHHHHHcCCCHHHEEEehhhccccCCccccCcccC
Confidence 467888888886 2 346889999999986
No 141
>PLN02292 ferric-chelate reductase
Probab=78.19 E-value=1.8 Score=39.88 Aligned_cols=31 Identities=13% Similarity=0.056 Sum_probs=23.3
Q ss_pred CCCeEEEcCCchH-HHHHHHHHHcCCCCCccccc
Q 031979 18 SKKFSLVKSPASL-GSTRSVSKAFGLKCSSFKAS 50 (149)
Q Consensus 18 ~~~~~y~CGP~~m-~~v~~~~~~~g~~~~~f~~~ 50 (149)
.+--|.+|||..| +.|.+.+.+.. .++|||+
T Consensus 665 ~~vgvlv~gp~~~~~~va~~c~s~~--~~~~~~~ 696 (702)
T PLN02292 665 SSVGVLVCGPKKMRQKVAKICSSGL--AENLHFE 696 (702)
T ss_pred CceeEEEECcHHHHHHHHHHHhcCC--CcceeEE
Confidence 3446999999999 77888887644 4567765
No 142
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=78.00 E-value=3.1 Score=25.94 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=21.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHcCCCC
Q 031979 62 PNGEENEFDAPDDAYIIDSAEDTGMEL 88 (149)
Q Consensus 62 ~~G~~~~~~v~~g~tLLea~~~~Gi~i 88 (149)
.+| +.+++++|.||.+++++.|++.
T Consensus 5 vNG--~~~~~~~~~tl~~lL~~l~~~~ 29 (66)
T PRK05659 5 LNG--EPRELPDGESVAALLAREGLAG 29 (66)
T ss_pred ECC--eEEEcCCCCCHHHHHHhcCCCC
Confidence 478 7888899999999999999864
No 143
>PLN02631 ferric-chelate reductase
Probab=74.48 E-value=2.6 Score=38.76 Aligned_cols=30 Identities=7% Similarity=0.018 Sum_probs=23.0
Q ss_pred CCeEEEcCCchH-HHHHHHHHHcCCCCCccccc
Q 031979 19 KKFSLVKSPASL-GSTRSVSKAFGLKCSSFKAS 50 (149)
Q Consensus 19 ~~~~y~CGP~~m-~~v~~~~~~~g~~~~~f~~~ 50 (149)
+--|.+|||+.| +.|.+.+.+.. .++|||+
T Consensus 663 ~vgvlv~gp~~~~~~va~~c~s~~--~~~~~f~ 693 (699)
T PLN02631 663 DVGVMVCGPRKMRHEVAKICSSGL--AKNLHFE 693 (699)
T ss_pred ceeEEEECcHHHHHHHHHHHhcCC--CcceeEE
Confidence 556999999999 77888887643 5667765
No 144
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=72.32 E-value=6.4 Score=25.40 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=19.5
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHc
Q 031979 61 GPNGEENEFDAPDDAYIIDSAEDT 84 (149)
Q Consensus 61 ~~~G~~~~~~v~~g~tLLea~~~~ 84 (149)
-|+|+...+.+.+|+||-|++...
T Consensus 7 LP~~q~t~V~vrpg~ti~d~L~~~ 30 (71)
T PF02196_consen 7 LPNGQRTVVQVRPGMTIRDALSKA 30 (71)
T ss_dssp ETTTEEEEEEE-TTSBHHHHHHHH
T ss_pred CCCCCEEEEEEcCCCCHHHHHHHH
Confidence 389988889999999999988653
No 145
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=72.32 E-value=2.5 Score=38.51 Aligned_cols=28 Identities=7% Similarity=0.048 Sum_probs=21.1
Q ss_pred cccCCCCCCeEEEcCCch-H-HHHHHHHHH
Q 031979 12 FQAAPRSKKFSLVKSPAS-L-GSTRSVSKA 39 (149)
Q Consensus 12 ~~~~~~~~~~~y~CGP~~-m-~~v~~~~~~ 39 (149)
++..-..+.++|+||+.. | ..|.+++.+
T Consensus 585 ~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~ 614 (645)
T KOG1158|consen 585 WELLKKEGGHIYVCGDAKGMAKDVQDALVR 614 (645)
T ss_pred HHHHhcCCcEEEEecCCccchHHHHHHHHH
Confidence 344445689999999998 8 777777754
No 146
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=70.30 E-value=7 Score=25.80 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=26.6
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEee
Q 031979 61 GPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVS 106 (149)
Q Consensus 61 ~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~ 106 (149)
-|+.+...+++.+|+||-|++.++ +.. |.=..-.|.|....
T Consensus 6 LPnqQrT~V~vrpG~tl~daL~Ka-Lk~----R~l~pe~C~V~~~~ 46 (74)
T cd01816 6 LPNKQRTVVNVRPGMTLRDALAKA-LKV----RGLQPECCAVFRLG 46 (74)
T ss_pred CCCCCeEEEEecCCcCHHHHHHHH-HHH----cCCChhHeEEEEcC
Confidence 467665679999999999998775 111 11123457777663
No 147
>PRK07440 hypothetical protein; Provisional
Probab=68.54 E-value=9.4 Score=24.49 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=24.4
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCC
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELP 89 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~ 89 (149)
.+++. .+| +..+++++.||.+.+++.+++..
T Consensus 4 ~m~i~-vNG--~~~~~~~~~tl~~lL~~l~~~~~ 34 (70)
T PRK07440 4 PITLQ-VNG--ETRTCSSGTSLPDLLQQLGFNPR 34 (70)
T ss_pred ceEEE-ECC--EEEEcCCCCCHHHHHHHcCCCCC
Confidence 35553 578 78888999999999999998653
No 148
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=68.45 E-value=4.4 Score=36.62 Aligned_cols=23 Identities=4% Similarity=-0.042 Sum_probs=17.6
Q ss_pred CCCCeEEEcC-CchH-HHHHHHHHH
Q 031979 17 RSKKFSLVKS-PASL-GSTRSVSKA 39 (149)
Q Consensus 17 ~~~~~~y~CG-P~~m-~~v~~~~~~ 39 (149)
..++++|+|| +..| ..|.++|.+
T Consensus 532 ~~ga~~YVCGd~~~Ma~dV~~AL~~ 556 (587)
T COG0369 532 EEGAHIYVCGDAKGMAKDVEEALLD 556 (587)
T ss_pred HCCCEEEEeCCCccchHHHHHHHHH
Confidence 3458999999 6668 778887765
No 149
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=68.40 E-value=4.9 Score=36.59 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=20.2
Q ss_pred CeEEEcCCchH-HHHHHHHHHcCCC
Q 031979 20 KFSLVKSPASL-GSTRSVSKAFGLK 43 (149)
Q Consensus 20 ~~~y~CGP~~m-~~v~~~~~~~g~~ 43 (149)
--||+|||+.| +.+++.+.+....
T Consensus 610 vgVf~CGp~~l~~~~~~~~~~~~~~ 634 (646)
T KOG0039|consen 610 VGVFSCGPPGLVKELRKLCNDFSSS 634 (646)
T ss_pred EEEEEeCCHHHHHHHHHHHHhcccc
Confidence 57999999996 9999999886553
No 150
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=67.56 E-value=10 Score=21.86 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=23.3
Q ss_pred EEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCC
Q 031979 57 VKLIGPNGEENEFDAPDDAYIIDSAEDTGMELP 89 (149)
Q Consensus 57 V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~ 89 (149)
|+|. .+|+.+.+.. ...|+-++|.++||.+.
T Consensus 2 Vtv~-~dG~~~~v~T-~a~tV~~~L~~~gI~l~ 32 (43)
T PF03990_consen 2 VTVT-VDGKEKTVYT-TASTVGDALKELGITLG 32 (43)
T ss_pred EEEE-ECCEEEEEEe-CCCCHHHHHHhCCCCCC
Confidence 6663 6886666653 45799999999999863
No 151
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=66.15 E-value=6.4 Score=31.69 Aligned_cols=28 Identities=14% Similarity=0.374 Sum_probs=21.9
Q ss_pred HHHHHHHcCCCC------CCCCCCcccCCcEEEE
Q 031979 77 IIDSAEDTGMEL------PYSCRAGACSTCAGQM 104 (149)
Q Consensus 77 LLea~~~~Gi~i------~~~C~~G~CGtC~v~v 104 (149)
+.+.+.+.|+++ .-.|+.|.|+.|.++.
T Consensus 196 v~~~l~~~gv~~~~sle~~M~CG~G~C~~C~v~~ 229 (281)
T PRK06222 196 VAELTKPYGIKTIVSLNPIMVDGTGMCGACRVTV 229 (281)
T ss_pred HHHHHHhcCCCEEEECcccccCcccccceeEEEE
Confidence 556777788753 4579999999999975
No 152
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=65.56 E-value=10 Score=25.25 Aligned_cols=32 Identities=9% Similarity=-0.066 Sum_probs=24.4
Q ss_pred cCCCCeEEEEcCCCchHHHHHHH----cCCCCCCCC
Q 031979 61 GPNGEENEFDAPDDAYIIDSAED----TGMELPYSC 92 (149)
Q Consensus 61 ~~~G~~~~~~v~~g~tLLea~~~----~Gi~i~~~C 92 (149)
.+||....+.+.+|+|++|.|+. +|++...-|
T Consensus 6 lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~ 41 (77)
T cd01818 6 LPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHY 41 (77)
T ss_pred CCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHhe
Confidence 37888889999999999998865 455554444
No 153
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=63.98 E-value=9.2 Score=23.68 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=22.6
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHcCCCCCCCC
Q 031979 61 GPNGEENEFDAPDDAYIIDSAEDTGMELPYSC 92 (149)
Q Consensus 61 ~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C 92 (149)
.++| ...+++.|.|.+|+|.+-+-.+...+
T Consensus 5 lpdG--~~~~~~~g~T~~d~A~~I~~~l~~~~ 34 (60)
T PF02824_consen 5 LPDG--SIKELPEGSTVLDVAYSIHSSLAKRA 34 (60)
T ss_dssp ETTS--CEEEEETTBBHHHHHHHHSHHHHHCE
T ss_pred CCCC--CeeeCCCCCCHHHHHHHHCHHHHhhe
Confidence 4899 56678899999999988765554433
No 154
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=63.81 E-value=12 Score=23.49 Aligned_cols=26 Identities=8% Similarity=0.171 Sum_probs=21.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHcCCCCC
Q 031979 62 PNGEENEFDAPDDAYIIDSAEDTGMELP 89 (149)
Q Consensus 62 ~~G~~~~~~v~~g~tLLea~~~~Gi~i~ 89 (149)
.+| +..+.+++.||.+.+++.+++..
T Consensus 5 vNG--~~~~~~~~~tl~~ll~~l~~~~~ 30 (65)
T PRK05863 5 VNE--EQVEVDEQTTVAALLDSLGFPEK 30 (65)
T ss_pred ECC--EEEEcCCCCcHHHHHHHcCCCCC
Confidence 478 67788899999999999998653
No 155
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=62.11 E-value=23 Score=22.48 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=24.4
Q ss_pred ceeEEEEEcCCCC--eEEEEcCCCchHHHHHHHcCCCC
Q 031979 53 AVYKVKLIGPNGE--ENEFDAPDDAYIIDSAEDTGMEL 88 (149)
Q Consensus 53 ~~~~V~~~~~~G~--~~~~~v~~g~tLLea~~~~Gi~i 88 (149)
.+.+|++ +|+ .+.++++++.|+.+.+++.+++.
T Consensus 3 ~mm~v~v---ng~~~~~~~~~~~~~tv~~ll~~l~~~~ 37 (70)
T PRK08364 3 LMIRVKV---IGRGIEKEIEWRKGMKVADILRAVGFNT 37 (70)
T ss_pred eEEEEEE---eccccceEEEcCCCCcHHHHHHHcCCCC
Confidence 3445555 342 45888899999999999998864
No 156
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=60.42 E-value=35 Score=22.20 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcCCCCCcccccCCceeEEEEEcCCCCeEEEEcCCC
Q 031979 30 LGSTRSVSKAFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDD 74 (149)
Q Consensus 30 m~~v~~~~~~~g~~~~~f~~~~~~~~~V~~~~~~G~~~~~~v~~g 74 (149)
++++.+.+++.|+.-..+.++....++|+....+|+...+.+.+.
T Consensus 31 ~~~~~~~l~~~G~~v~~ve~~~~g~yev~~~~~dG~~~ev~vD~~ 75 (83)
T PF13670_consen 31 IEQAVAKLEAQGYQVREVEFDDDGCYEVEARDKDGKKVEVYVDPA 75 (83)
T ss_pred HHHHHHHHHhcCCceEEEEEcCCCEEEEEEEECCCCEEEEEEcCC
Confidence 578888899999954557775566689996678997777766653
No 157
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=59.75 E-value=17 Score=23.94 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=28.0
Q ss_pred cCCCCeEEEEcCCCchHHHHHHH----cCCCCCCCCCCcccCCcEEEEeeCc
Q 031979 61 GPNGEENEFDAPDDAYIIDSAED----TGMELPYSCRAGACSTCAGQMVSGS 108 (149)
Q Consensus 61 ~~~G~~~~~~v~~g~tLLea~~~----~Gi~i~~~C~~G~CGtC~v~v~~G~ 108 (149)
-+||+.-.+.+.+|+||-|++.+ .|+.+ ..|.+.+..|+
T Consensus 6 LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~---------~~~~vf~~g~~ 48 (73)
T cd01817 6 LPDGSTTVVPTRPGESIRDLLSGLCEKRGINY---------AAVDLFLVGGD 48 (73)
T ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHHcCCCh---------hHEEEEEecCC
Confidence 38998888999999998887654 55543 23677777543
No 158
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=58.56 E-value=14 Score=22.83 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHcCCC
Q 031979 62 PNGEENEFDAPDDAYIIDSAEDTGME 87 (149)
Q Consensus 62 ~~G~~~~~~v~~g~tLLea~~~~Gi~ 87 (149)
.+| +.++++++.||.+++.+.++.
T Consensus 5 vNg--~~~~~~~~~tl~~ll~~l~~~ 28 (65)
T PRK06944 5 LNQ--QTLSLPDGATVADALAAYGAR 28 (65)
T ss_pred ECC--EEEECCCCCcHHHHHHhhCCC
Confidence 467 788899999999999998885
No 159
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=57.17 E-value=6.2 Score=26.63 Aligned_cols=21 Identities=14% Similarity=0.404 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHcCCC
Q 031979 67 NEFDAPDDAYIIDSAEDTGME 87 (149)
Q Consensus 67 ~~~~v~~g~tLLea~~~~Gi~ 87 (149)
.++++++|.|+.+|++++|+.
T Consensus 16 ~~l~vp~GtTv~~Ai~~Sgi~ 36 (84)
T PF03658_consen 16 LTLEVPEGTTVAQAIEASGIL 36 (84)
T ss_dssp EEEEEETT-BHHHHHHHHTHH
T ss_pred EEEECCCcCcHHHHHHHcCch
Confidence 468899999999999999985
No 160
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=56.26 E-value=25 Score=22.60 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=29.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCC
Q 031979 62 PNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112 (149)
Q Consensus 62 ~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~ 112 (149)
.+| +.++++++.|+.+.+.+.|++... . +-.+.|++-++
T Consensus 7 ~ng--~~~e~~~~~tv~dLL~~l~~~~~~---------v-av~vNg~iVpr 45 (68)
T COG2104 7 LNG--KEVEIAEGTTVADLLAQLGLNPEG---------V-AVAVNGEIVPR 45 (68)
T ss_pred ECC--EEEEcCCCCcHHHHHHHhCCCCce---------E-EEEECCEEccc
Confidence 457 889999999999999999998732 2 33457877664
No 161
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=55.05 E-value=37 Score=30.03 Aligned_cols=13 Identities=15% Similarity=-0.036 Sum_probs=10.1
Q ss_pred CCCCCeEEEcCCc
Q 031979 16 PRSKKFSLVKSPA 28 (149)
Q Consensus 16 ~~~~~~~y~CGP~ 28 (149)
|...-.+|+|||.
T Consensus 18 p~~~v~mY~CGpT 30 (481)
T PRK14534 18 NFSDVKVYACGPT 30 (481)
T ss_pred cCCceEEEeCCCC
Confidence 4456789999993
No 162
>PRK01777 hypothetical protein; Validated
Probab=53.09 E-value=19 Score=24.73 Aligned_cols=23 Identities=9% Similarity=0.169 Sum_probs=20.3
Q ss_pred EEEEcCCCchHHHHHHHcCCCCC
Q 031979 67 NEFDAPDDAYIIDSAEDTGMELP 89 (149)
Q Consensus 67 ~~~~v~~g~tLLea~~~~Gi~i~ 89 (149)
..+++++|.|+-+++.+.||...
T Consensus 19 ~~l~vp~GtTv~dal~~sgi~~~ 41 (95)
T PRK01777 19 QRLTLQEGATVEEAIRASGLLEL 41 (95)
T ss_pred EEEEcCCCCcHHHHHHHcCCCcc
Confidence 57889999999999999999654
No 163
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=51.51 E-value=33 Score=22.89 Aligned_cols=32 Identities=3% Similarity=0.021 Sum_probs=23.7
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCC
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMEL 88 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i 88 (149)
+..+++. .|| +..+++++.||.+.+...+++.
T Consensus 16 ~~~m~I~-VNG--~~~~~~~~~tl~~LL~~l~~~~ 47 (84)
T PRK06083 16 MVLITIS-IND--QSIQVDISSSLAQIIAQLSLPE 47 (84)
T ss_pred CceEEEE-ECC--eEEEcCCCCcHHHHHHHcCCCC
Confidence 3344552 578 7788899999999999887753
No 164
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=50.38 E-value=27 Score=21.82 Aligned_cols=25 Identities=8% Similarity=0.000 Sum_probs=21.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHcCCCC
Q 031979 62 PNGEENEFDAPDDAYIIDSAEDTGMEL 88 (149)
Q Consensus 62 ~~G~~~~~~v~~g~tLLea~~~~Gi~i 88 (149)
.+| +.++++++.||.+.+...++..
T Consensus 5 vNg--~~~~~~~~~tl~~ll~~l~~~~ 29 (66)
T PRK08053 5 FND--QPMQCAAGQTVHELLEQLNQLQ 29 (66)
T ss_pred ECC--eEEEcCCCCCHHHHHHHcCCCC
Confidence 478 7888899999999999888764
No 165
>PRK06437 hypothetical protein; Provisional
Probab=50.19 E-value=39 Score=21.33 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHcCCCC
Q 031979 63 NGEENEFDAPDDAYIIDSAEDTGMEL 88 (149)
Q Consensus 63 ~G~~~~~~v~~g~tLLea~~~~Gi~i 88 (149)
.+..++++++++.|+.+.+.+.|++.
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~Lgi~~ 34 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKDLGLDE 34 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHHcCCCC
Confidence 44557899999999999999999863
No 166
>PF10531 SLBB: SLBB domain; InterPro: IPR019554 The soluble ligand-binding beta-grasp domain (SLBB) contains a beta-grasp fold. They are found in a diverse set of proteins that include the animal vitamin B12 uptake proteins; transcobalamin, intrinsic factor and the bacterial polysaccharide export proteins []. Some proteins may be part of a membrane complex involved in electron transport, others are probably involved in the export of the extracellular polysaccharide colanic acid from the cell to medium.; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1 2W8I_E 2W8H_E 2J58_D.
Probab=49.08 E-value=28 Score=21.19 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHcCCCCCC
Q 031979 67 NEFDAPDDAYIIDSAEDTGMELPY 90 (149)
Q Consensus 67 ~~~~v~~g~tLLea~~~~Gi~i~~ 90 (149)
-.++++.|.||.|++..+|-..+.
T Consensus 12 G~~~~~~g~tl~~~i~~AGG~~~~ 35 (59)
T PF10531_consen 12 GTYELPPGTTLSDAIAQAGGLTPR 35 (59)
T ss_dssp EEEEEETT-BHHHHHHCTTSBBTT
T ss_pred EEEEECCCCcHHHHHHHhCCCCCC
Confidence 468888899999999999865544
No 167
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=48.76 E-value=16 Score=33.93 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=19.7
Q ss_pred CCCeEEEcCCchH-HHHHHHHHHcCC
Q 031979 18 SKKFSLVKSPASL-GSTRSVSKAFGL 42 (149)
Q Consensus 18 ~~~~~y~CGP~~m-~~v~~~~~~~g~ 42 (149)
.+--|.+|||++| +.|.+.+++...
T Consensus 674 ~~vgvlv~gp~~~~~~va~~~~~~~~ 699 (722)
T PLN02844 674 SDIGVLVCGPETMKESVASMCRLKSQ 699 (722)
T ss_pred CceeEEEeCchHHHHHHHHHHHhccc
Confidence 4456999999998 788888877644
No 168
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=46.71 E-value=41 Score=24.22 Aligned_cols=61 Identities=15% Similarity=0.220 Sum_probs=34.1
Q ss_pred EcCCc--h----HHHHHHHHHHcCCCCCcccccC-------------------CceeEEEEEcCCCCeEEEEcCCCchHH
Q 031979 24 VKSPA--S----LGSTRSVSKAFGLKCSSFKASA-------------------MAVYKVKLIGPNGEENEFDAPDDAYII 78 (149)
Q Consensus 24 ~CGP~--~----m~~v~~~~~~~g~~~~~f~~~~-------------------~~~~~V~~~~~~G~~~~~~v~~g~tLL 78 (149)
+|||. . +.++-+.|++.|+.-.||.+.. ....-|+++ || ..+....=-|.-
T Consensus 17 vCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dG--eiv~~G~YPt~e 92 (123)
T PF06953_consen 17 VCGPSVDPELVRFAADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DG--EIVKTGRYPTNE 92 (123)
T ss_dssp -SSSS--HHHHHHHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TT--EEEEESS---HH
T ss_pred ccCCCCCHHHHHHHHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CC--EEEEecCCCCHH
Confidence 79995 3 2778888899999988875431 123457774 67 455444445666
Q ss_pred HHHHHcCCCC
Q 031979 79 DSAEDTGMEL 88 (149)
Q Consensus 79 ea~~~~Gi~i 88 (149)
|.++-.|+..
T Consensus 93 El~~~~~i~~ 102 (123)
T PF06953_consen 93 ELAEWLGISF 102 (123)
T ss_dssp HHHHHHT--G
T ss_pred HHHHHhCCCc
Confidence 6666666653
No 169
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=45.73 E-value=47 Score=21.31 Aligned_cols=35 Identities=20% Similarity=0.116 Sum_probs=24.7
Q ss_pred eEEEEEcCCCCeEEEEcCCCchHHHHH----HHcCCCCC
Q 031979 55 YKVKLIGPNGEENEFDAPDDAYIIDSA----EDTGMELP 89 (149)
Q Consensus 55 ~~V~~~~~~G~~~~~~v~~g~tLLea~----~~~Gi~i~ 89 (149)
..|+|....|+...+++++..|+.+.= .+.|+++.
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~ 40 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPE 40 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChH
Confidence 567786667888888999999987743 33465544
No 170
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=43.66 E-value=35 Score=21.07 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=21.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHcCCCC
Q 031979 62 PNGEENEFDAPDDAYIIDSAEDTGMEL 88 (149)
Q Consensus 62 ~~G~~~~~~v~~g~tLLea~~~~Gi~i 88 (149)
.+| +.++.+++.||.+.+...+++.
T Consensus 3 iNg--~~~~~~~~~tv~~ll~~l~~~~ 27 (64)
T TIGR01683 3 VNG--EPVEVEDGLTLAALLESLGLDP 27 (64)
T ss_pred ECC--eEEEcCCCCcHHHHHHHcCCCC
Confidence 367 7888899999999999998863
No 171
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=43.62 E-value=31 Score=21.98 Aligned_cols=24 Identities=8% Similarity=-0.011 Sum_probs=14.9
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHc
Q 031979 61 GPNGEENEFDAPDDAYIIDSAEDT 84 (149)
Q Consensus 61 ~~~G~~~~~~v~~g~tLLea~~~~ 84 (149)
..++....+.+.++.+|.+.++++
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~ea 26 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEA 26 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHH
T ss_pred ccCCcEEEEEECCCCCHHHHHHHH
Confidence 367777889999999888877664
No 172
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=40.41 E-value=64 Score=23.51 Aligned_cols=67 Identities=16% Similarity=0.234 Sum_probs=44.0
Q ss_pred EEEcCCch-HHHHHHHHHHcCCCCCcccccC----------------------CceeEEEEEcCCCCeEEEEc--CCC--
Q 031979 22 SLVKSPAS-LGSTRSVSKAFGLKCSSFKASA----------------------MAVYKVKLIGPNGEENEFDA--PDD-- 74 (149)
Q Consensus 22 ~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~----------------------~~~~~V~~~~~~G~~~~~~v--~~g-- 74 (149)
+|+=--.+ +..+...|.++|+.-..|.... ...|+|++. +- ..+++ .||
T Consensus 8 vFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d~A~~~Lee~gF~Vr~~--dV--laVEmeD~PG~l 83 (142)
T COG4747 8 VFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPDEAHSVLEEAGFTVRET--DV--LAVEMEDVPGGL 83 (142)
T ss_pred EEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChHHHHHHHHHCCcEEEee--eE--EEEEecCCCCcH
Confidence 44444344 8888899999999866553220 235777773 22 33443 344
Q ss_pred chHHHHHHHcCCCCCCCC
Q 031979 75 AYIIDSAEDTGMELPYSC 92 (149)
Q Consensus 75 ~tLLea~~~~Gi~i~~~C 92 (149)
..|++++-+++|++.|.=
T Consensus 84 ~~I~~vl~d~diNldYiY 101 (142)
T COG4747 84 SRIAEVLGDADINLDYIY 101 (142)
T ss_pred HHHHHHHhhcCcCceeee
Confidence 579999999999998753
No 173
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=39.81 E-value=81 Score=25.74 Aligned_cols=65 Identities=23% Similarity=0.380 Sum_probs=40.2
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCC--CCCCC-CcccCCcEEEEeeCcccCCCCCCCChhh
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMEL--PYSCR-AGACSTCAGQMVSGSVDQSDGSFLDDKQ 121 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i--~~~C~-~G~CGtC~v~v~~G~v~~~~~~~L~~~~ 121 (149)
..+|.+..-+- ..+..++-++.++.-.+--+++ -..|. ..-||.|-..-+=|..+..+ .+|+++.
T Consensus 78 ~QKiC~s~~~e--i~i~F~~r~~~~~~~i~vamplGlyT~~~VeapCGlcs~e~iIGllDvp~-~FlDPdR 145 (308)
T COG4189 78 SQKICISTTDE--IEINFPDRTESLDLYIQVAMPLGLYTDFEVEAPCGLCSAEGIIGLLDVPD-TFLDPDR 145 (308)
T ss_pred ceeEeEeecce--EEEecCCCCchhhhheeeeecccceeeeeeccCcccccccceeeeecCcc-ccCCHHH
Confidence 45666643332 6677777777777644444443 34555 78999999877777666544 3555544
No 174
>COG3061 OapA Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane]
Probab=39.23 E-value=29 Score=27.72 Aligned_cols=27 Identities=11% Similarity=0.325 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHcCCCCC
Q 031979 63 NGEENEFDAPDDAYIIDSAEDTGMELP 89 (149)
Q Consensus 63 ~G~~~~~~v~~g~tLLea~~~~Gi~i~ 89 (149)
+|..+++.|+.|.||.+..+.+++++.
T Consensus 156 ~g~wqsy~V~~G~TLaQlFRdn~Lpit 182 (242)
T COG3061 156 SGNWQSYTVPQGKTLAQLFRDNNLPIT 182 (242)
T ss_pred cccceeEEecCCccHHHHHhccCCChH
Confidence 456689999999999999999999864
No 175
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=39.18 E-value=15 Score=31.68 Aligned_cols=36 Identities=14% Similarity=-0.027 Sum_probs=30.9
Q ss_pred cccccccCCCCCCeEEEcCCch-H--HHHHHHHHHcCCC
Q 031979 8 TSCLFQAAPRSKKFSLVKSPAS-L--GSTRSVSKAFGLK 43 (149)
Q Consensus 8 ~~~~~~~~~~~~~~~y~CGP~~-m--~~v~~~~~~~g~~ 43 (149)
|.+|+++.-..+++|++||+.+ . +.|.++|.+.|++
T Consensus 49 ta~l~~~L~~~GA~v~~~~~np~stqd~vaa~l~~~gi~ 87 (413)
T cd00401 49 TAVLIETLVALGAEVRWSSCNIFSTQDHAAAAIAAAGIP 87 (413)
T ss_pred HHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhcCce
Confidence 7789999999999999999776 3 7888888888776
No 176
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=37.74 E-value=66 Score=21.73 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=23.1
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHHHH
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSAED 83 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~ 83 (149)
.|+|...||..+++.+.+.+|..+++..
T Consensus 4 vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~ 31 (85)
T cd01787 4 VVKVYSEDGASKSLEVDERMTARDVCQL 31 (85)
T ss_pred EEEEEecCCCeeEEEEcCCCcHHHHHHH
Confidence 4566668999999999999999888755
No 177
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=36.79 E-value=68 Score=20.18 Aligned_cols=29 Identities=3% Similarity=0.138 Sum_probs=20.7
Q ss_pred EEcCCCCeEEEEcCCCchHHHH----HHHcCCC
Q 031979 59 LIGPNGEENEFDAPDDAYIIDS----AEDTGME 87 (149)
Q Consensus 59 ~~~~~G~~~~~~v~~g~tLLea----~~~~Gi~ 87 (149)
|...+|++.++++.+..|+.+. ....|++
T Consensus 3 vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~ 35 (74)
T cd01810 3 VRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQ 35 (74)
T ss_pred EECCCCCEEEEEECCcChHHHHHHHHHHHhCCC
Confidence 3346788888999999999883 3445554
No 178
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=36.63 E-value=77 Score=20.94 Aligned_cols=29 Identities=7% Similarity=-0.023 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCeEEEEc--CCCchHHHHHHH
Q 031979 55 YKVKLIGPNGEENEFDA--PDDAYIIDSAED 83 (149)
Q Consensus 55 ~~V~~~~~~G~~~~~~v--~~g~tLLea~~~ 83 (149)
++++|..++|+...|++ ++..|+.+.=++
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~ 32 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTH 32 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHH
Confidence 56778767887645555 789999886544
No 179
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=35.84 E-value=15 Score=35.42 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=41.7
Q ss_pred CCeEEEcCCchHHHHHHHHHHcCCCCCcccccCCceeEEEEEcCCCCeEEEEcCCCchHHHHHHHc-------CC-----
Q 031979 19 KKFSLVKSPASLGSTRSVSKAFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDT-------GM----- 86 (149)
Q Consensus 19 ~~~~y~CGP~~m~~v~~~~~~~g~~~~~f~~~~~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~-------Gi----- 86 (149)
+.-+.+.|=-+..-+.+.+++.|..-..|...... .+.+... . +.+.+- ..-++.++.+. ++
T Consensus 894 k~vLLVgGGVGiApLak~Lk~~G~~V~~~~~~d~~--~~~l~~v-D--~vi~iG-s~~mm~~~~~~~~~~~~~~~~~i~s 967 (1028)
T PRK06567 894 KKIVIVDFEVGNIGLLKVLKENNNEVIFVTYPDIK--IRKLVSV-D--IVIINA-SPEIIEELQSLKNEIFGENTEIIVS 967 (1028)
T ss_pred CeEEEEEccccHHHHHHHHHHCCCeEEEEEcCCCC--cccchhc-c--EEEEeC-CHHHHHHHHHHHhhhccCCCcEEEe
Confidence 34456666555434555666666654444432211 1333111 1 333322 23444444332 32
Q ss_pred -CCCCCCC-CcccCCcEEEEeeC
Q 031979 87 -ELPYSCR-AGACSTCAGQMVSG 107 (149)
Q Consensus 87 -~i~~~C~-~G~CGtC~v~v~~G 107 (149)
.-+-.|. .|+||.|++++ .|
T Consensus 968 vns~M~c~m~giC~qC~~~~-~G 989 (1028)
T PRK06567 968 VNSSMQCMMKGICGQCIQKV-KG 989 (1028)
T ss_pred cCcHHHHHhhhhhhhheEEe-cC
Confidence 2455799 89999999998 55
No 180
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=35.77 E-value=57 Score=20.52 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=20.0
Q ss_pred CCCCeEEEEcCCC-chHHHHHHHcCCCC
Q 031979 62 PNGEENEFDAPDD-AYIIDSAEDTGMEL 88 (149)
Q Consensus 62 ~~G~~~~~~v~~g-~tLLea~~~~Gi~i 88 (149)
.+| +..+++++ .||.+.++..|++.
T Consensus 5 vNG--~~~~~~~~~~tv~~lL~~l~~~~ 30 (67)
T PRK07696 5 ING--NQIEVPESVKTVAELLTHLELDN 30 (67)
T ss_pred ECC--EEEEcCCCcccHHHHHHHcCCCC
Confidence 478 67788887 68999999998864
No 181
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=34.29 E-value=4 Score=28.66 Aligned_cols=30 Identities=33% Similarity=0.630 Sum_probs=23.8
Q ss_pred EEEEcCCCCeEEEEcCCCchHHHHHHHcCC
Q 031979 57 VKLIGPNGEENEFDAPDDAYIIDSAEDTGM 86 (149)
Q Consensus 57 V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi 86 (149)
|+|+..+|..+++..|.|++++|+.++..|
T Consensus 83 VklLL~~GAdrt~~~PdG~~~~eate~edI 112 (117)
T KOG4214|consen 83 VKLLLQNGADRTIHAPDGTALIEATEEEDI 112 (117)
T ss_pred HHHHHHcCcccceeCCCchhHHhhccHHHH
Confidence 444445677789999999999999988765
No 182
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=34.04 E-value=40 Score=24.03 Aligned_cols=20 Identities=5% Similarity=0.240 Sum_probs=16.6
Q ss_pred HHHHHHHHHHcCCCCCcccc
Q 031979 30 LGSTRSVSKAFGLKCSSFKA 49 (149)
Q Consensus 30 m~~v~~~~~~~g~~~~~f~~ 49 (149)
|+.+++.|++.|+.++|+.+
T Consensus 79 v~~~k~~L~~~Gi~~eRv~~ 98 (124)
T PF02662_consen 79 VERLKKLLEELGIEPERVRL 98 (124)
T ss_pred HHHHHHHHHHcCCChhHeEE
Confidence 46788899999999999764
No 183
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=33.11 E-value=73 Score=19.58 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=21.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHcCCCC
Q 031979 62 PNGEENEFDAPDDAYIIDSAEDTGMEL 88 (149)
Q Consensus 62 ~~G~~~~~~v~~g~tLLea~~~~Gi~i 88 (149)
.+| +.++++++.|+.+.+.+.+++.
T Consensus 4 iNg--~~~~~~~~~tv~~ll~~l~~~~ 28 (65)
T cd00565 4 VNG--EPREVEEGATLAELLEELGLDP 28 (65)
T ss_pred ECC--eEEEcCCCCCHHHHHHHcCCCC
Confidence 467 7888899999999999998763
No 184
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=33.06 E-value=51 Score=21.94 Aligned_cols=14 Identities=36% Similarity=1.080 Sum_probs=11.1
Q ss_pred CCCCCCCcccCCcE
Q 031979 88 LPYSCRAGACSTCA 101 (149)
Q Consensus 88 i~~~C~~G~CGtC~ 101 (149)
.+.+|..|.|..|-
T Consensus 52 ~~~gC~sGsCk~C~ 65 (78)
T PRK15431 52 EPDGCLSGSCKSCP 65 (78)
T ss_pred CCCCCCCCCCCCCC
Confidence 45689999998884
No 185
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=32.92 E-value=44 Score=22.24 Aligned_cols=22 Identities=9% Similarity=0.203 Sum_probs=13.4
Q ss_pred EEEEcCCCchHHHHHHHcCCCC
Q 031979 67 NEFDAPDDAYIIDSAEDTGMEL 88 (149)
Q Consensus 67 ~~~~v~~g~tLLea~~~~Gi~i 88 (149)
+++.|++|+||-....+.|++.
T Consensus 3 ~~~~V~~GDtLs~iF~~~gls~ 24 (85)
T PF04225_consen 3 QEYTVKSGDTLSTIFRRAGLSA 24 (85)
T ss_dssp -EEE--TT--HHHHHHHTT--H
T ss_pred cEEEECCCCcHHHHHHHcCCCH
Confidence 5688999999999999999874
No 186
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=31.98 E-value=44 Score=22.83 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=16.5
Q ss_pred EEEcCCch-------HHHHHHHHHHcCC
Q 031979 22 SLVKSPAS-------LGSTRSVSKAFGL 42 (149)
Q Consensus 22 ~y~CGP~~-------m~~v~~~~~~~g~ 42 (149)
||+.||-. ++.++++|++.|+
T Consensus 1 IYlAgp~F~~~~~~~~~~~~~~L~~~g~ 28 (113)
T PF05014_consen 1 IYLAGPFFSEEQKARVERLREALEKNGF 28 (113)
T ss_dssp EEEESGGSSHHHHHHHHHHHHHHHTTTT
T ss_pred CEEeCCcCCHHHHHHHHHHHHHHHhCCC
Confidence 79999962 4678888888887
No 187
>TIGR02899 spore_safA spore coat assembly protein SafA. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.
Probab=31.61 E-value=31 Score=18.66 Aligned_cols=18 Identities=11% Similarity=0.244 Sum_probs=14.3
Q ss_pred cCCCchHHHHHHHcCCCC
Q 031979 71 APDDAYIIDSAEDTGMEL 88 (149)
Q Consensus 71 v~~g~tLLea~~~~Gi~i 88 (149)
+.+|+||...+++.|+.+
T Consensus 1 v~~gdtl~~IA~~~~~~~ 18 (44)
T TIGR02899 1 VQKGDTLWKIAKKYGVDF 18 (44)
T ss_pred CCCCCCHHHHHHHHCcCH
Confidence 467889999999888764
No 188
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=31.23 E-value=1.1e+02 Score=19.65 Aligned_cols=26 Identities=12% Similarity=0.284 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCeEEEEcCCCchHHHH
Q 031979 55 YKVKLIGPNGEENEFDAPDDAYIIDS 80 (149)
Q Consensus 55 ~~V~~~~~~G~~~~~~v~~g~tLLea 80 (149)
.+|+|...+|+...+++++..|+-+.
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~L 27 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGL 27 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHH
Confidence 35666556787788999999998764
No 189
>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function.
Probab=30.90 E-value=44 Score=17.35 Aligned_cols=21 Identities=10% Similarity=0.249 Sum_probs=16.1
Q ss_pred EEEcCCCchHHHHHHHcCCCC
Q 031979 68 EFDAPDDAYIIDSAEDTGMEL 88 (149)
Q Consensus 68 ~~~v~~g~tLLea~~~~Gi~i 88 (149)
...+..|+|+-..+.+.|+.+
T Consensus 2 ~~~v~~gdt~~~ia~~~~~~~ 22 (46)
T cd00118 2 TYTVKKGDTLSSIAQRYGISV 22 (46)
T ss_pred EEEECCCCCHHHHHHHHCcCH
Confidence 356678899999888887764
No 190
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=29.75 E-value=1.4e+02 Score=20.39 Aligned_cols=27 Identities=11% Similarity=0.032 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHH
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDS 80 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea 80 (149)
..+|.|...+|++..+++.+..|+-+.
T Consensus 27 ~M~I~Vk~l~G~~~~leV~~~~TV~~l 53 (103)
T cd01802 27 TMELFIETLTGTCFELRVSPFETVISV 53 (103)
T ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHH
Confidence 356777667888889999999998873
No 191
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=28.90 E-value=41 Score=21.27 Aligned_cols=15 Identities=13% Similarity=0.328 Sum_probs=10.4
Q ss_pred CCCCCCeEEEcCCch
Q 031979 15 APRSKKFSLVKSPAS 29 (149)
Q Consensus 15 ~~~~~~~~y~CGP~~ 29 (149)
.|+...-+|+||--+
T Consensus 13 ~~r~~~miYiCgdC~ 27 (62)
T KOG3507|consen 13 GPRTATMIYICGDCG 27 (62)
T ss_pred CCCcccEEEEecccc
Confidence 345567899999654
No 192
>PTZ00044 ubiquitin; Provisional
Probab=28.46 E-value=1.2e+02 Score=18.93 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=19.4
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHH
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDS 80 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea 80 (149)
+|.|...+|++..+++.+..|+.+.
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tv~~l 26 (76)
T PTZ00044 2 QILIKTLTGKKQSFNFEPDNTVQQV 26 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 3555556888889999999998774
No 193
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=28.40 E-value=2.3e+02 Score=21.11 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=25.6
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCC
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMEL 88 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i 88 (149)
..-|+|. .+ +.-+..++|++-|.|+...|+.+
T Consensus 63 vvLvRfv-~~--~mwVTF~dg~sALaals~dg~~v 94 (146)
T PF08952_consen 63 VVLVRFV-GD--TMWVTFRDGQSALAALSLDGIQV 94 (146)
T ss_dssp ECEEEEE-TT--CEEEEESSCHHHHHHHHGCCSEE
T ss_pred eEEEEEe-CC--eEEEEECccHHHHHHHccCCcEE
Confidence 4567774 23 37888899999999999999877
No 194
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=28.29 E-value=1.2e+02 Score=18.94 Aligned_cols=25 Identities=8% Similarity=0.116 Sum_probs=19.0
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHH
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDS 80 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea 80 (149)
+|++...+|....+++++..|+.+.
T Consensus 2 ~i~vk~~~g~~~~l~v~~~~TV~~l 26 (77)
T cd01805 2 KITFKTLKQQTFPIEVDPDDTVAEL 26 (77)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 3555556788888999999998775
No 195
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=28.21 E-value=49 Score=18.25 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=12.3
Q ss_pred EcCCCchHHHHHHHcCCCC
Q 031979 70 DAPDDAYIIDSAEDTGMEL 88 (149)
Q Consensus 70 ~v~~g~tLLea~~~~Gi~i 88 (149)
.|.+|+|+-..+.+.|+.+
T Consensus 2 ~V~~gDtl~~IA~~~~~~~ 20 (44)
T PF01476_consen 2 TVQPGDTLWSIAKRYGISV 20 (44)
T ss_dssp EE-TT--HHHHHHHTTS-H
T ss_pred EECcCCcHHHHHhhhhhhH
Confidence 4678999999999988764
No 196
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=28.04 E-value=46 Score=24.22 Aligned_cols=28 Identities=29% Similarity=0.650 Sum_probs=21.4
Q ss_pred CchHHHHHHHcCCC--CCCCCCC---cccCCcE
Q 031979 74 DAYIIDSAEDTGME--LPYSCRA---GACSTCA 101 (149)
Q Consensus 74 g~tLLea~~~~Gi~--i~~~C~~---G~CGtC~ 101 (149)
-.-|++.+++.|++ ..++|.. .-||+|.
T Consensus 126 K~ei~~~~~~~g~~~~~s~sC~~~~~~~CG~C~ 158 (169)
T cd01995 126 KAEIVRLGGELGVPLELTWSCYNGGEKHCGECD 158 (169)
T ss_pred HHHHHHHHhHcCCChhheeeccCCCCCCCCCCH
Confidence 45688889999985 6789983 4688884
No 197
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=27.60 E-value=1.2e+02 Score=18.94 Aligned_cols=26 Identities=8% Similarity=0.064 Sum_probs=19.4
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHH
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSA 81 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~ 81 (149)
+|.+...+|+...+++.+.+|+-+.-
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tV~~lK 27 (74)
T cd01807 2 FLTVKLLQGRECSLQVSEKESVSTLK 27 (74)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 35555568888889999999987743
No 198
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=27.36 E-value=1.3e+02 Score=18.88 Aligned_cols=19 Identities=5% Similarity=0.170 Sum_probs=16.3
Q ss_pred CCCCeEEEEcCCCchHHHH
Q 031979 62 PNGEENEFDAPDDAYIIDS 80 (149)
Q Consensus 62 ~~G~~~~~~v~~g~tLLea 80 (149)
.+|++..+++++..|+.+.
T Consensus 6 ~~G~~~~l~v~~~~TV~~l 24 (70)
T cd01794 6 STGKDVKLSVSSKDTVGQL 24 (70)
T ss_pred CCCCEEEEEECCcChHHHH
Confidence 5788888999999999883
No 199
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=26.86 E-value=1.6e+02 Score=18.06 Aligned_cols=68 Identities=16% Similarity=0.170 Sum_probs=37.5
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHHHH----cCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeee
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSAED----TGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCV 131 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~----~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq 131 (149)
+|.|...+|+...+++++..|+.+.-.+ .|+++.. ..-+..|..- .+...|++-...++..+...
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~----------q~L~~~g~~L-~d~~~L~~~~i~~~~~i~l~ 70 (76)
T cd01803 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ----------QRLIFAGKQL-EDGRTLSDYNIQKESTLHLV 70 (76)
T ss_pred EEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHH----------eEEEECCEEC-CCCCcHHHcCCCCCCEEEEE
Confidence 4566556788888999999998775433 3443221 1222345432 23334554445566666655
Q ss_pred eEE
Q 031979 132 AYP 134 (149)
Q Consensus 132 ~~~ 134 (149)
.+.
T Consensus 71 ~~~ 73 (76)
T cd01803 71 LRL 73 (76)
T ss_pred EEc
Confidence 543
No 200
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=26.63 E-value=24 Score=29.34 Aligned_cols=29 Identities=17% Similarity=0.146 Sum_probs=17.9
Q ss_pred CCCCCCeEEEcCCch-----H---------HHHHHHHHHcCCC
Q 031979 15 APRSKKFSLVKSPAS-----L---------GSTRSVSKAFGLK 43 (149)
Q Consensus 15 ~~~~~~~~y~CGP~~-----m---------~~v~~~~~~~g~~ 43 (149)
.-+..-.+|+|||.- + |-+++.|+..|..
T Consensus 4 ~~~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~ 46 (300)
T PF01406_consen 4 LNPGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYD 46 (300)
T ss_dssp SCTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-E
T ss_pred CCCCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCe
Confidence 334456799999962 2 4456666666665
No 201
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.49 E-value=1.4e+02 Score=17.39 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=31.6
Q ss_pred CchHHHHHHHHHHcCCCCCcccc-cC--CceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCC
Q 031979 27 PASLGSTRSVSKAFGLKCSSFKA-SA--MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMEL 88 (149)
Q Consensus 27 P~~m~~v~~~~~~~g~~~~~f~~-~~--~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i 88 (149)
|..+..+-+.+.++|+.-.++.. .. .....+ .+.++..+.+++.++++|+.+
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v----------~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYAFVEKKGGKALL----------IFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEEEccCCCCeEEE----------EEEeCCHHHHHHHHHHCCceE
Confidence 33478888888888886444321 11 111122 344444679999999999754
No 202
>COG1586 SpeD S-adenosylmethionine decarboxylase [Amino acid transport and metabolism]
Probab=26.21 E-value=68 Score=23.61 Aligned_cols=21 Identities=5% Similarity=-0.108 Sum_probs=15.7
Q ss_pred CeEEEcCCc-h-HHHHHHHHHHc
Q 031979 20 KFSLVKSPA-S-LGSTRSVSKAF 40 (149)
Q Consensus 20 ~~~y~CGP~-~-m~~v~~~~~~~ 40 (149)
-+||.||.. . .+|++-+.+++
T Consensus 88 iDVyTCG~~~~p~~A~~yi~~~L 110 (136)
T COG1586 88 IDVYTCGDHIDPLKAFNYLVEQL 110 (136)
T ss_pred EEEEccCCCCCHHHHHHHHHHHh
Confidence 579999984 3 78877777654
No 203
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=25.96 E-value=68 Score=28.03 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHcCCCCCC
Q 031979 62 PNGEENEFDAPDDAYIIDSAEDTGMELPY 90 (149)
Q Consensus 62 ~~G~~~~~~v~~g~tLLea~~~~Gi~i~~ 90 (149)
-|| +.++++.|.||-||+++.|...+.
T Consensus 6 VnG--eev~lp~gsTlrdalea~ga~y~e 32 (512)
T COG4070 6 VNG--EEVTLPAGSTLRDALEASGASYIE 32 (512)
T ss_pred ECC--eEecCCCcchHHHHHHhcCCcccC
Confidence 478 889999999999999999987655
No 204
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=25.67 E-value=27 Score=21.94 Aligned_cols=26 Identities=23% Similarity=0.691 Sum_probs=16.0
Q ss_pred chHHHHHHHcCCC----CCCCCCCcccCCcE
Q 031979 75 AYIIDSAEDTGME----LPYSCRAGACSTCA 101 (149)
Q Consensus 75 ~tLLea~~~~Gi~----i~~~C~~G~CGtC~ 101 (149)
+.+|+.+++.|.- ....| .|.|+.|.
T Consensus 32 e~mL~~l~~kG~I~~~~~~~~~-~~~C~~C~ 61 (69)
T PF09012_consen 32 EAMLEQLIRKGYIRKVDMSSCC-GGSCSSCG 61 (69)
T ss_dssp HHHHHHHHCCTSCEEEEEE--S-SSSSSS-S
T ss_pred HHHHHHHHHCCcEEEecCCCCC-CCCCCCCC
Confidence 4677888888752 33444 78899886
No 205
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=25.66 E-value=52 Score=22.93 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=22.1
Q ss_pred CCCCeEEEcCCch-HHHHHHHHH-HcCCCCCcccc
Q 031979 17 RSKKFSLVKSPAS-LGSTRSVSK-AFGLKCSSFKA 49 (149)
Q Consensus 17 ~~~~~~y~CGP~~-m~~v~~~~~-~~g~~~~~f~~ 49 (149)
..+..+|+-|=.. +.++++.+. ++|++.+++++
T Consensus 78 ~~~~~vW~AgE~~~~r~lR~~l~~~~g~~~~~~~~ 112 (119)
T PF04954_consen 78 AGDGYVWVAGEASAVRALRRHLREERGLPRDRIYA 112 (119)
T ss_dssp SS-EEEEEEEEHHHHHHHHHHHHHH----GGGEEE
T ss_pred CCCeEEEEEecHHHHHHHHHHHHHhhCCCHHHeEE
Confidence 5667788888887 699999997 77999877653
No 206
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=25.38 E-value=1.5e+02 Score=18.95 Aligned_cols=27 Identities=15% Similarity=0.147 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCeEEEEcCCCchHHHHH
Q 031979 55 YKVKLIGPNGEENEFDAPDDAYIIDSA 81 (149)
Q Consensus 55 ~~V~~~~~~G~~~~~~v~~g~tLLea~ 81 (149)
++|+|...+|+...+++++..|+-+.=
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK 29 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELK 29 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHH
Confidence 456665568877778889999987643
No 207
>PRK01236 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=24.60 E-value=74 Score=23.07 Aligned_cols=19 Identities=5% Similarity=-0.288 Sum_probs=11.8
Q ss_pred CeEEEcCCch-HHHHHHHHH
Q 031979 20 KFSLVKSPAS-LGSTRSVSK 38 (149)
Q Consensus 20 ~~~y~CGP~~-m~~v~~~~~ 38 (149)
-++|.||+.. .+.+.+.++
T Consensus 79 vDiftCg~~~~p~~a~~~L~ 98 (131)
T PRK01236 79 LDVYTCGDPSKADKAFEYII 98 (131)
T ss_pred EEEEecCCCCCHHHHHHHHH
Confidence 4699999864 444444443
No 208
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=24.43 E-value=1.7e+02 Score=17.66 Aligned_cols=26 Identities=12% Similarity=0.341 Sum_probs=19.2
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHH
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSA 81 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~ 81 (149)
+|.+...+|....+++++..|+-+.-
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK 27 (72)
T cd01809 2 EIKVKTLDSQTHTFTVEEEITVLDLK 27 (72)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 45555567878889999998887653
No 209
>TIGR03330 SAM_DCase_Bsu S-adenosylmethionine decarboxylase proenzyme, Bacillus form. Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535).
Probab=24.32 E-value=77 Score=22.19 Aligned_cols=9 Identities=0% Similarity=-0.333 Sum_probs=7.5
Q ss_pred CeEEEcCCc
Q 031979 20 KFSLVKSPA 28 (149)
Q Consensus 20 ~~~y~CGP~ 28 (149)
-++|.||+.
T Consensus 77 vDiftCg~~ 85 (112)
T TIGR03330 77 VDVFTCGDH 85 (112)
T ss_pred EEEEecCCC
Confidence 469999995
No 210
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=23.71 E-value=73 Score=28.61 Aligned_cols=23 Identities=4% Similarity=0.108 Sum_probs=19.5
Q ss_pred CCCCeEEEcCCch-H-HHHHHHHHH
Q 031979 17 RSKKFSLVKSPAS-L-GSTRSVSKA 39 (149)
Q Consensus 17 ~~~~~~y~CGP~~-m-~~v~~~~~~ 39 (149)
..++.+|+||-++ | .+|+.++.+
T Consensus 520 ~~gA~~fvaGsS~~MP~~V~~al~e 544 (574)
T KOG1159|consen 520 NLGAYFFVAGSSGKMPKDVKEALIE 544 (574)
T ss_pred ccCCEEEEecCCCCCcHHHHHHHHH
Confidence 4678999999998 9 888888865
No 211
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=23.34 E-value=56 Score=25.43 Aligned_cols=18 Identities=17% Similarity=0.076 Sum_probs=12.7
Q ss_pred cccCCCCCCeEEEcCCch
Q 031979 12 FQAAPRSKKFSLVKSPAS 29 (149)
Q Consensus 12 ~~~~~~~~~~~y~CGP~~ 29 (149)
|...+.....+|+|||..
T Consensus 13 ~~p~~~~~~~~y~~gpt~ 30 (213)
T cd00672 13 FVPLNPGLVTMYVCGPTV 30 (213)
T ss_pred eecCCCCCceEEEeCCcc
Confidence 344455667899999964
No 212
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=23.19 E-value=99 Score=17.98 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=19.7
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHcCCCC
Q 031979 61 GPNGEENEFDAPDDAYIIDSAEDTGMEL 88 (149)
Q Consensus 61 ~~~G~~~~~~v~~g~tLLea~~~~Gi~i 88 (149)
.++| ..++++.|.|+.+.+...+..+
T Consensus 5 ~~~g--~~~~~~~~~t~~~~~~~~~~~~ 30 (60)
T cd01668 5 TPKG--EIIELPAGATVLDFAYAIHTEI 30 (60)
T ss_pred CCCC--CEEEcCCCCCHHHHHHHHChHh
Confidence 3677 5678899999999887665544
No 213
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=22.93 E-value=1.9e+02 Score=17.65 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=19.3
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHH
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSA 81 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~ 81 (149)
+|.|...+|+...+++++..|+-+.-
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK 27 (76)
T cd01806 2 LIKVKTLTGKEIEIDIEPTDKVERIK 27 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHH
Confidence 45565568888889999998887644
No 214
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=22.54 E-value=2.3e+02 Score=18.44 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=26.1
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHHHH----HcCCCC
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDSAE----DTGMEL 88 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~----~~Gi~i 88 (149)
..+|.+...+|....|.+....+|..... +.|+++
T Consensus 11 ~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~ 49 (87)
T cd01763 11 HINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSM 49 (87)
T ss_pred eEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCc
Confidence 45677767789888999999998877653 356654
No 215
>PRK00969 hypothetical protein; Provisional
Probab=22.51 E-value=1.3e+02 Score=27.00 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=24.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHcCCCCCCCC
Q 031979 62 PNGEENEFDAPDDAYIIDSAEDTGMELPYSC 92 (149)
Q Consensus 62 ~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C 92 (149)
.|| ..+++++|.||=|++.++|.+..-++
T Consensus 6 vng--~~~~v~~g~Tl~Dal~~s~~~y~~g~ 34 (508)
T PRK00969 6 VNG--EEVTVPEGSTLKDALKASGAPYIEGT 34 (508)
T ss_pred ECC--EEeecCCCCcHHHHHhhcCCCcCCCC
Confidence 467 78999999999999999998876655
No 216
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.07 E-value=1.9e+02 Score=17.34 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCCCCCccccc---CCceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCC
Q 031979 30 LGSTRSVSKAFGLKCSSFKAS---AMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPY 90 (149)
Q Consensus 30 m~~v~~~~~~~g~~~~~f~~~---~~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~ 90 (149)
|..+.+.+.+.|+.-.++... ......+.| .++....+.+.++++++|+.+.+
T Consensus 15 l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i--------~v~~~~~~~~~~~L~~~G~~v~~ 70 (72)
T cd04883 15 LADIAAIFKDRGVNIVSVLVYPSKEEDNKILVF--------RVQTMNPRPIIEDLRRAGYEVLW 70 (72)
T ss_pred HHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEE--------EEecCCHHHHHHHHHHCCCeeeC
Confidence 788888888888875543211 111222222 12222334999999999987654
No 217
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=21.98 E-value=43 Score=29.08 Aligned_cols=36 Identities=14% Similarity=0.005 Sum_probs=29.6
Q ss_pred cccccccCCCCCCeEEEcCCch--H-HHHHHHHHHcCCC
Q 031979 8 TSCLFQAAPRSKKFSLVKSPAS--L-GSTRSVSKAFGLK 43 (149)
Q Consensus 8 ~~~~~~~~~~~~~~~y~CGP~~--m-~~v~~~~~~~g~~ 43 (149)
|-.|+++.-..+++|++|||.+ - +.+.++|.+.|++
T Consensus 61 Ta~l~~~L~~~GA~v~~~~~np~Stqd~vaaaL~~~gi~ 99 (425)
T PRK05476 61 TAVLIETLKALGAEVRWASCNPFSTQDDVAAALAAAGIP 99 (425)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCcccCHHHHHHHHHCCce
Confidence 6678889899999999999875 3 7888888886665
No 218
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=21.91 E-value=1.1e+02 Score=21.09 Aligned_cols=29 Identities=10% Similarity=0.085 Sum_probs=23.6
Q ss_pred CCCeEEEcCCch---HHHHHHHHHHcCCCCCc
Q 031979 18 SKKFSLVKSPAS---LGSTRSVSKAFGLKCSS 46 (149)
Q Consensus 18 ~~~~~y~CGP~~---m~~v~~~~~~~g~~~~~ 46 (149)
.+.++++.||+- .+.+++.+...|+|-..
T Consensus 49 ~~~DvIll~PQi~~~~~~i~~~~~~~~ipv~~ 80 (104)
T PRK09590 49 AEYDLYLVSPQTKMYFKQFEEAGAKVGKPVVQ 80 (104)
T ss_pred CCCCEEEEChHHHHHHHHHHHHhhhcCCCEEE
Confidence 468999999994 38999999888888544
No 219
>PRK05417 glutathione-dependent formaldehyde-activating enzyme; Provisional
Probab=21.84 E-value=69 Score=24.80 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=21.1
Q ss_pred CCCCeEEEc-----C--CchHHHHHHHHHHcCCCC
Q 031979 17 RSKKFSLVK-----S--PASLGSTRSVSKAFGLKC 44 (149)
Q Consensus 17 ~~~~~~y~C-----G--P~~m~~v~~~~~~~g~~~ 44 (149)
++..++|+- | |..|++||+-++++|+.+
T Consensus 132 ~P~~~ifvsS~~e~~~~~~~~~~~~~~~~~~~~~~ 166 (191)
T PRK05417 132 APGFAAFVSSIIESGTDPEQMDGIRARLKELGLEP 166 (191)
T ss_pred CceEEeeeeeccccCCChHHhHHHHHHHHHcCCCc
Confidence 455667764 4 334999999999999974
No 220
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=21.75 E-value=72 Score=25.26 Aligned_cols=28 Identities=29% Similarity=0.580 Sum_probs=19.6
Q ss_pred chHHHHHHHcC-CC----CCCCCCCc----ccCCcEE
Q 031979 75 AYIIDSAEDTG-ME----LPYSCRAG----ACSTCAG 102 (149)
Q Consensus 75 ~tLLea~~~~G-i~----i~~~C~~G----~CGtC~v 102 (149)
.-|.+.+.+.| ++ ..++|..| .||.|..
T Consensus 166 ~eI~~l~~~lg~v~~~~~~T~SCy~g~~g~~CG~C~s 202 (231)
T PRK11106 166 AETWALADYYGQLDLVRHETLTCYNGIKGDGCGHCAA 202 (231)
T ss_pred HHHHHHHHHcCCcccccCceeeccCcCCCCCCCCCHH
Confidence 45777778888 64 57899964 6777654
No 221
>PRK02770 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=21.70 E-value=96 Score=22.76 Aligned_cols=16 Identities=13% Similarity=-0.029 Sum_probs=10.8
Q ss_pred cCCCCC---CeEEEcCCch
Q 031979 14 AAPRSK---KFSLVKSPAS 29 (149)
Q Consensus 14 ~~~~~~---~~~y~CGP~~ 29 (149)
+=|.-+ -++|.||+..
T Consensus 82 TwPE~gyaavDiftCg~~~ 100 (139)
T PRK02770 82 TWPESGYAAVDVFTCGDHT 100 (139)
T ss_pred eCcCCCcEEEEEEecCCCC
Confidence 345544 3799999963
No 222
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=21.54 E-value=1.2e+02 Score=19.25 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=17.9
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHH
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDS 80 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea 80 (149)
+|++. .+|+...++++++.|+.+.
T Consensus 2 ~i~vk-~~g~~~~v~v~~~~Tv~~l 25 (74)
T cd01813 2 PVIVK-WGGQEYSVTTLSEDTVLDL 25 (74)
T ss_pred EEEEE-ECCEEEEEEECCCCCHHHH
Confidence 45553 4677788999999998764
No 223
>PRK00458 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=21.11 E-value=96 Score=22.33 Aligned_cols=10 Identities=0% Similarity=-0.310 Sum_probs=8.0
Q ss_pred CeEEEcCCch
Q 031979 20 KFSLVKSPAS 29 (149)
Q Consensus 20 ~~~y~CGP~~ 29 (149)
-++|.||+..
T Consensus 90 vDiftCg~~~ 99 (127)
T PRK00458 90 VDVYTCGEHT 99 (127)
T ss_pred EEEEecCCCC
Confidence 4699999963
No 224
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=21.06 E-value=59 Score=28.82 Aligned_cols=11 Identities=9% Similarity=-0.103 Sum_probs=8.9
Q ss_pred CCCeEEEcCCc
Q 031979 18 SKKFSLVKSPA 28 (149)
Q Consensus 18 ~~~~~y~CGP~ 28 (149)
..-.+|+|||.
T Consensus 22 ~~v~mYvCGpT 32 (490)
T PRK14536 22 GHVRLYGCGPT 32 (490)
T ss_pred CceEEEeeCCc
Confidence 44679999997
No 225
>PRK01706 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=20.94 E-value=95 Score=22.21 Aligned_cols=9 Identities=0% Similarity=-0.300 Sum_probs=7.5
Q ss_pred CeEEEcCCc
Q 031979 20 KFSLVKSPA 28 (149)
Q Consensus 20 ~~~y~CGP~ 28 (149)
-++|.||+.
T Consensus 80 vDiftCg~~ 88 (123)
T PRK01706 80 IDCYTCGTT 88 (123)
T ss_pred EEEEecCCC
Confidence 479999995
No 226
>cd08490 PBP2_NikA_DppA_OppA_like_3 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=20.47 E-value=1.4e+02 Score=25.09 Aligned_cols=58 Identities=9% Similarity=0.023 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCCCCc--ccccCCceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCC
Q 031979 30 LGSTRSVSKAFGLKCSS--FKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELP 89 (149)
Q Consensus 30 m~~v~~~~~~~g~~~~~--f~~~~~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~ 89 (149)
++.++++|+++|+.... +....+..++++|...++ ........+.|-+.+++.||.+.
T Consensus 294 ~~~A~~lL~~aG~~~~~~~~~~~~G~~~~l~l~~~~~--~~~~~~~a~~i~~~l~~~Gi~v~ 353 (470)
T cd08490 294 PEKAKELLAEAGWTDGDGDGIEKDGEPLELTLLTYTS--RPELPPIAEAIQAQLKKIGIDVE 353 (470)
T ss_pred HHHHHHHHHHcCCCCCCCcccccCCceEEEEEEecCC--CCchHHHHHHHHHHHHHcCceEE
Confidence 78899999999997532 222223445666642333 11122334567777788888653
No 227
>smart00257 LysM Lysin motif.
Probab=20.22 E-value=99 Score=15.59 Aligned_cols=20 Identities=10% Similarity=0.242 Sum_probs=14.9
Q ss_pred EEcCCCchHHHHHHHcCCCC
Q 031979 69 FDAPDDAYIIDSAEDTGMEL 88 (149)
Q Consensus 69 ~~v~~g~tLLea~~~~Gi~i 88 (149)
+.+.+|+|+-..+.+.++..
T Consensus 2 ~~v~~gdt~~~ia~~~~~~~ 21 (44)
T smart00257 2 YTVKKGDTLSSIARRYGISV 21 (44)
T ss_pred eEeCCCCCHHHHHHHhCCCH
Confidence 34678888888888877653
No 228
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=20.22 E-value=81 Score=21.83 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=21.0
Q ss_pred CCCeEEEcCCch-H-HHHHHHHHHcCCC
Q 031979 18 SKKFSLVKSPAS-L-GSTRSVSKAFGLK 43 (149)
Q Consensus 18 ~~~~~y~CGP~~-m-~~v~~~~~~~g~~ 43 (149)
.+-++-+.||+. + +.+.+.+++.|++
T Consensus 61 ~~idlvvvGPE~pL~~Gl~D~l~~~gi~ 88 (100)
T PF02844_consen 61 NKIDLVVVGPEAPLVAGLADALRAAGIP 88 (100)
T ss_dssp TTESEEEESSHHHHHTTHHHHHHHTT-C
T ss_pred cCCCEEEECChHHHHHHHHHHHHHCCCc
Confidence 455788999996 5 8899999999986
Done!