Query 031979
Match_columns 149
No_of_seqs 283 out of 1766
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 12:40:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031979.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031979hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pia_A Phthalate dioxygenase r 100.0 8.6E-29 2.9E-33 201.2 12.3 119 17-142 191-321 (321)
2 1awd_A Ferredoxin; electron tr 99.9 2.1E-26 7E-31 157.6 10.5 94 55-149 1-94 (94)
3 1frr_A Ferredoxin I; electron 99.9 3.3E-26 1.1E-30 156.4 10.9 95 54-149 1-95 (95)
4 1czp_A Ferredoxin I; [2Fe-2S] 99.9 6.2E-26 2.1E-30 156.3 11.3 96 54-149 2-98 (98)
5 1a70_A Ferredoxin; iron-sulfur 99.9 6.6E-26 2.3E-30 156.0 9.7 95 54-149 2-96 (97)
6 1iue_A Ferredoxin; electron tr 99.9 9.7E-26 3.3E-30 155.4 8.2 95 54-149 2-96 (98)
7 1frd_A Heterocyst [2Fe-2S] fer 99.9 2.9E-25 9.7E-30 152.7 10.1 95 54-148 2-97 (98)
8 1wri_A Ferredoxin II, ferredox 99.9 2.8E-25 9.6E-30 151.7 9.9 93 54-148 1-93 (93)
9 3lxf_A Ferredoxin; iron, iron- 99.9 3.4E-24 1.2E-28 149.5 6.0 91 56-146 2-104 (104)
10 1jq4_A Methane monooxygenase c 99.9 2.3E-24 7.8E-29 148.3 5.1 92 54-145 4-97 (98)
11 3hui_A Ferredoxin; cytochrome 99.9 1.2E-23 3.9E-28 151.7 5.0 96 51-146 18-125 (126)
12 1xlq_A Putidaredoxin, PDX; [2F 99.9 1.7E-23 5.6E-28 145.9 5.6 91 56-146 2-105 (106)
13 3ah7_A [2Fe-2S]ferredoxin; [2F 99.9 8.8E-23 3E-27 143.8 8.9 94 54-147 1-105 (113)
14 1uwm_A Ferredoxin VI, FDVI; el 99.9 2.2E-23 7.4E-28 145.3 4.6 92 55-146 1-105 (106)
15 2y5c_A Adrenodoxin-like protei 99.9 1.7E-23 5.7E-28 146.7 3.9 94 53-146 4-108 (109)
16 2wlb_A ETP1-FD, electron trans 99.9 1.1E-22 3.8E-27 141.0 7.1 91 53-143 2-103 (103)
17 1b9r_A Protein (terpredoxin); 99.9 1E-23 3.4E-28 146.7 1.8 90 56-145 2-104 (105)
18 2bt6_A Adrenodoxin 1; rutheniu 99.9 6.4E-23 2.2E-27 143.4 4.2 91 53-143 5-108 (108)
19 1doi_A 2Fe-2S ferredoxin; halo 99.9 2.6E-22 8.8E-27 145.0 7.4 87 54-143 27-116 (128)
20 1i7h_A Ferredoxin; 2Fe-2S,elec 99.9 7.7E-22 2.6E-26 138.6 8.8 94 54-147 1-105 (111)
21 3zyy_X Iron-sulfur cluster bin 99.9 1.6E-21 5.4E-26 171.4 10.4 94 52-148 1-95 (631)
22 1krh_A Benzoate 1,2-dioxygenas 99.8 4.4E-21 1.5E-25 156.1 11.0 94 52-145 1-98 (338)
23 1l5p_A Ferredoxin; [2Fe-2S] cl 99.8 1.5E-20 5.3E-25 128.2 4.5 80 56-138 2-86 (93)
24 3n9z_C Adrenodoxin; cytochrome 99.8 1.6E-21 5.5E-26 139.9 -2.7 95 52-146 3-110 (123)
25 3i9v_3 NADH-quinone oxidoreduc 98.9 9.7E-10 3.3E-14 98.8 7.0 86 57-145 2-98 (783)
26 1t3q_A Quinoline 2-oxidoreduct 98.9 2E-09 6.9E-14 80.4 6.8 68 55-141 10-81 (168)
27 3c8y_A Iron hydrogenase 1; dit 98.7 2.3E-08 7.9E-13 87.1 7.7 68 57-144 2-76 (574)
28 1kf6_B Fumarate reductase iron 98.6 4.8E-08 1.6E-12 76.1 4.8 59 66-142 25-92 (243)
29 2bs2_B Quinol-fumarate reducta 98.5 7.6E-08 2.6E-12 74.9 4.7 53 66-136 25-83 (241)
30 1rm6_C 4-hydroxybenzoyl-COA re 98.5 1.8E-07 6.2E-12 69.4 6.3 62 56-136 4-67 (161)
31 3hrd_D Nicotinate dehydrogenas 98.5 2.2E-07 7.4E-12 69.0 6.2 52 54-107 3-56 (160)
32 1n62_A Carbon monoxide dehydro 98.5 3E-07 1E-11 68.6 6.5 51 55-107 4-56 (166)
33 1ffv_A CUTS, iron-sulfur prote 98.4 3.7E-07 1.3E-11 68.0 6.5 51 55-107 4-56 (163)
34 2wdq_B Succinate dehydrogenase 98.3 3.6E-07 1.2E-11 70.9 4.7 41 67-108 23-70 (238)
35 2h88_B Succinate dehydrogenase 98.2 1.6E-06 5.5E-11 68.0 4.9 53 66-136 32-91 (252)
36 3nvw_A Xanthine dehydrogenase/ 97.7 3.9E-05 1.3E-09 57.0 4.3 49 56-105 4-55 (164)
37 2gpj_A Siderophore-interacting 97.6 2E-05 6.7E-10 61.3 2.7 36 16-51 188-225 (252)
38 2w3s_A Xanthine dehydrogenase; 97.6 6.4E-05 2.2E-09 64.0 5.8 48 56-104 2-51 (462)
39 1ep3_B Dihydroorotate dehydrog 97.6 8E-05 2.7E-09 57.9 5.9 56 11-105 183-239 (262)
40 1qfj_A Protein (flavin reducta 97.6 4.8E-05 1.6E-09 57.7 4.1 34 17-50 192-227 (232)
41 4eh1_A Flavohemoprotein; struc 97.6 3.7E-05 1.3E-09 58.6 3.1 39 14-52 196-235 (243)
42 1vlb_A Aldehyde oxidoreductase 97.5 0.00013 4.6E-09 66.6 6.3 50 56-107 3-54 (907)
43 1tvc_A Methane monooxygenase c 97.5 6.9E-05 2.4E-09 57.6 3.7 34 18-51 209-243 (250)
44 1gvh_A Flavohemoprotein; oxido 97.4 9.2E-05 3.1E-09 60.8 4.2 34 19-52 356-390 (396)
45 4g1v_A Flavohemoglobin; three 97.4 6.2E-05 2.1E-09 62.0 2.7 33 19-51 356-389 (399)
46 1cqx_A Flavohemoprotein; globi 97.4 8.9E-05 3.1E-09 61.0 3.5 34 19-52 362-396 (403)
47 1dgj_A Aldehyde oxidoreductase 97.4 0.00017 5.8E-09 65.9 5.4 50 56-107 3-54 (907)
48 2r6h_A NADH:ubiquinone oxidore 97.4 7E-05 2.4E-09 58.6 2.4 34 18-51 254-288 (290)
49 2eix_A NADH-cytochrome B5 redu 97.3 0.00011 3.8E-09 56.1 3.1 31 18-48 210-241 (243)
50 3lrx_A Putative hydrogenase; a 97.3 0.00011 3.9E-09 53.4 2.9 32 18-50 112-144 (158)
51 2qdx_A Ferredoxin reductase; o 97.3 0.00014 4.9E-09 56.0 3.5 28 18-45 211-239 (257)
52 3vr8_B Iron-sulfur subunit of 97.3 0.00021 7.2E-09 57.3 4.5 42 66-108 56-104 (282)
53 1krh_A Benzoate 1,2-dioxygenas 97.2 0.00011 3.8E-09 59.0 2.0 35 17-51 299-334 (338)
54 1fdr_A Flavodoxin reductase; f 97.2 0.00022 7.4E-09 54.6 3.4 34 16-49 203-238 (248)
55 3lyu_A Putative hydrogenase; t 97.2 0.00025 8.6E-09 50.7 3.4 27 18-44 107-134 (142)
56 1umk_A B5R, NADH-cytochrome B5 97.1 0.00016 5.4E-09 56.3 1.6 31 18-48 241-273 (275)
57 2bgi_A Ferredoxin-NADP(H) redu 97.0 0.00033 1.1E-08 54.6 3.3 32 18-49 225-257 (272)
58 4fk8_A Ferredoxin--NADP reduct 97.0 0.00041 1.4E-08 53.8 3.7 34 16-49 225-259 (271)
59 3jqq_A Ferredoxin NADP reducta 96.8 0.00031 1.1E-08 56.4 1.4 33 18-50 277-314 (316)
60 3a1f_A Cytochrome B-245 heavy 96.8 0.00078 2.7E-08 48.8 3.2 26 18-43 146-172 (186)
61 2cnd_A NADH-dependent nitrate 96.7 0.00047 1.6E-08 53.3 1.3 31 18-48 235-267 (270)
62 1y56_A Hypothetical protein PH 96.6 0.0025 8.6E-08 53.8 5.5 45 56-104 15-66 (493)
63 3unc_A Xanthine dehydrogenase/ 96.1 0.0054 1.9E-07 58.2 5.0 49 56-105 5-56 (1332)
64 1tll_A Nitric-oxide synthase, 95.2 0.0066 2.3E-07 53.8 2.1 23 18-40 601-624 (688)
65 3zyv_A AOH1; oxidoreductase, m 94.8 0.032 1.1E-06 52.9 5.4 49 56-105 9-60 (1335)
66 2bmw_A Ferredoxin--NADP reduct 94.6 0.011 3.9E-07 46.4 1.6 30 17-46 254-288 (304)
67 2gag_A Heterotetrameric sarcos 94.3 0.073 2.5E-06 48.7 6.6 49 54-105 20-79 (965)
68 2b5o_A FNR, ferredoxin--NADP r 94.3 0.012 4E-07 48.7 1.1 27 18-44 353-380 (402)
69 1fnb_A Ferredoxin-NADP+ reduct 93.9 0.02 6.9E-07 45.3 1.7 23 18-40 265-288 (314)
70 1f20_A Nitric-oxide synthase; 93.8 0.023 8E-07 47.5 2.0 25 18-42 380-405 (435)
71 3vo2_A Putative uncharacterize 93.7 0.02 7E-07 45.3 1.5 24 17-40 260-284 (310)
72 3lo8_A Ferredoxin--NADP reduct 93.7 0.033 1.1E-06 43.9 2.7 23 18-40 262-285 (311)
73 2rc5_A Ferredoxin-NADP reducta 93.1 0.043 1.5E-06 43.2 2.4 28 21-50 268-297 (314)
74 4dql_A Bifunctional P-450/NADP 92.7 0.049 1.7E-06 45.1 2.3 23 18-40 337-361 (393)
75 1ddg_A Sulfite reductase (NADP 91.1 0.12 4E-06 42.4 2.7 23 18-40 320-344 (374)
76 3qfs_A CPR, P450R, NADPH--cyto 91.0 0.096 3.3E-06 44.3 2.3 23 18-40 403-427 (458)
77 2qtl_A MSR;, methionine syntha 90.5 0.14 4.6E-06 44.2 2.8 22 18-39 484-507 (539)
78 2bpo_A CPR, P450R, NADPH-cytoc 88.0 0.27 9.3E-06 43.4 2.9 23 18-40 628-652 (682)
79 3qe2_A CPR, P450R, NADPH--cyto 87.8 0.22 7.6E-06 43.5 2.1 23 18-40 563-587 (618)
80 1c1y_B Proto-onkogene serine/t 77.5 2.7 9.3E-05 27.0 3.7 45 57-106 4-48 (77)
81 1wxm_A A-RAF proto-oncogene se 75.6 2.9 0.0001 27.4 3.5 45 56-105 9-53 (86)
82 3ny5_A Serine/threonine-protei 75.3 3.5 0.00012 27.6 3.8 50 52-106 11-60 (96)
83 2al3_A TUG long isoform; TUG U 73.5 3.5 0.00012 27.2 3.5 32 56-87 11-46 (90)
84 2l05_A Serine/threonine-protei 72.4 4.2 0.00014 27.2 3.7 41 56-105 19-63 (95)
85 3u30_A Ubiquitin, linear DI-ub 72.2 23 0.00079 25.0 8.6 79 51-140 17-99 (172)
86 1rrb_A RAF-1 RBD, RAF proto-on 67.7 6.7 0.00023 26.7 3.9 41 56-105 20-64 (107)
87 3u7z_A Putative metal binding 67.0 7.2 0.00024 26.2 4.0 33 52-85 6-40 (101)
88 2l32_A Small archaeal modifier 64.8 14 0.00048 23.0 4.9 38 66-113 12-49 (74)
89 3hvz_A Uncharacterized protein 61.7 7.5 0.00026 24.7 3.2 32 56-89 7-38 (78)
90 3kdv_A DDRB, DNA damage respon 58.0 12 0.00042 27.3 4.0 34 52-85 5-38 (184)
91 2k02_A Ferrous iron transport 57.7 4.1 0.00014 26.6 1.4 26 76-101 35-65 (87)
92 2kmm_A Guanosine-3',5'-BIS(dip 53.7 15 0.00051 22.0 3.5 29 58-88 4-32 (73)
93 1xn7_A Hypothetical protein YH 52.8 7.7 0.00026 24.6 2.1 26 76-101 35-65 (78)
94 1uh6_A Ubiquitin-like 5; beta- 52.5 16 0.00056 24.2 3.8 38 52-89 26-67 (100)
95 3plu_A Ubiquitin-like modifier 52.4 17 0.00058 23.9 3.8 37 52-88 19-59 (93)
96 2kdi_A Ubiquitin, vacuolar pro 49.9 41 0.0014 22.3 5.5 76 54-140 9-88 (114)
97 1v2y_A 3300001G02RIK protein; 49.8 24 0.00081 23.5 4.3 28 53-80 6-33 (105)
98 1e0g_A Membrane-bound lytic mu 47.5 9.9 0.00034 20.7 1.8 22 67-88 3-24 (48)
99 2uyz_B Small ubiquitin-related 46.6 26 0.0009 21.1 3.9 69 53-132 2-74 (79)
100 1wgr_A Growth factor receptor- 44.9 33 0.0011 22.8 4.3 35 54-88 9-43 (100)
101 2k5p_A THis protein, thiamine- 44.2 16 0.00054 23.0 2.5 24 62-87 5-30 (78)
102 3kwl_A Uncharacterized protein 44.1 37 0.0013 28.7 5.6 38 67-112 45-82 (514)
103 3phx_B Ubiquitin-like protein 43.0 37 0.0013 20.3 4.2 35 54-88 4-42 (79)
104 3mtn_B UBA80, ubcep1, ubiquiti 40.6 52 0.0018 19.7 4.6 71 54-135 3-77 (85)
105 1tyg_B YJBS; alpha beta barrel 37.3 22 0.00075 22.9 2.4 24 62-87 25-49 (87)
106 3dbh_I NEDD8; cell cycle, acti 37.1 69 0.0024 19.4 4.9 38 52-89 10-51 (88)
107 3ktb_A Arsenical resistance op 36.7 94 0.0032 20.8 5.8 26 24-49 20-51 (106)
108 2kl0_A Putative thiamin biosyn 35.8 24 0.00084 21.7 2.4 24 62-88 5-28 (73)
109 2gow_A HCG-1 protein, ubiquiti 35.0 49 0.0017 22.6 4.1 29 54-82 17-45 (125)
110 1wgh_A Ubiquitin-like 3, HCG-1 34.9 58 0.002 22.0 4.4 28 54-81 16-43 (116)
111 1wwt_A Threonyl-tRNA synthetas 34.8 31 0.0011 21.5 2.9 33 54-90 11-44 (88)
112 1wh3_A 59 kDa 2'-5'-oligoadeny 34.8 63 0.0022 19.6 4.4 72 53-135 6-81 (87)
113 3vxv_A Methyl-CPG-binding doma 34.1 36 0.0012 21.0 3.0 34 17-50 23-64 (69)
114 1kon_A Protein YEBC, YEBC; alp 33.9 97 0.0033 23.9 6.0 55 18-84 170-229 (249)
115 2wyq_A HHR23A, UV excision rep 33.6 56 0.0019 19.7 3.9 27 54-80 5-31 (85)
116 1ndd_A NEDD8, protein (ubiquit 33.4 72 0.0025 18.5 4.5 33 56-88 2-38 (76)
117 2dzi_A Ubiquitin-like protein 33.3 77 0.0026 18.7 4.7 36 53-88 6-45 (81)
118 3nbm_A PTS system, lactose-spe 32.9 17 0.00057 24.4 1.3 26 18-43 52-80 (108)
119 3n3k_B Ubiquitin; hydrolase, p 32.8 54 0.0018 19.7 3.8 70 54-134 3-76 (85)
120 3v6c_B Ubiquitin; structural g 32.6 71 0.0024 19.7 4.4 38 53-90 16-57 (91)
121 1f0z_A THis protein; ubiquitin 31.7 22 0.00074 21.2 1.6 24 62-87 5-28 (66)
122 4dwf_A HLA-B-associated transc 31.7 69 0.0023 19.7 4.2 35 54-88 5-43 (90)
123 2djp_A Hypothetical protein SB 31.6 23 0.00077 21.6 1.7 22 67-88 16-37 (77)
124 2hj8_A Interferon-induced 17 k 30.5 60 0.002 20.1 3.7 70 54-135 4-78 (88)
125 2lxa_A Ubiquitin-like protein 30.5 40 0.0014 21.4 2.8 28 55-82 2-31 (87)
126 1wgd_A Homocysteine-responsive 30.0 73 0.0025 19.8 4.1 29 52-80 5-35 (93)
127 3a9j_A Ubiquitin; protein comp 29.9 84 0.0029 18.1 4.3 68 56-134 2-73 (76)
128 4eew_A Large proline-rich prot 29.4 61 0.0021 19.8 3.6 36 53-88 16-55 (88)
129 3m62_B UV excision repair prot 27.3 50 0.0017 21.4 3.0 68 55-133 2-73 (106)
130 2hj1_A Hypothetical protein; s 27.3 23 0.0008 23.3 1.3 21 67-87 28-48 (97)
131 4fbj_B NEDD8; effector-HOST ta 27.2 78 0.0027 19.5 3.8 71 56-137 2-76 (88)
132 2kk8_A Uncharacterized protein 27.0 83 0.0028 19.4 3.9 27 55-81 11-37 (84)
133 4hcn_B Polyubiquitin, ubiquiti 26.8 99 0.0034 19.5 4.4 69 54-133 22-94 (98)
134 1wia_A Hypothetical ubiquitin- 26.8 1E+02 0.0034 19.2 4.3 72 52-132 5-76 (95)
135 2ky8_A Methyl-CPG-binding doma 26.5 45 0.0016 20.7 2.5 34 17-51 30-68 (72)
136 3k9o_B Ubiquitin, UBB+1; E2-25 25.8 1.2E+02 0.0041 18.6 7.6 73 56-139 3-79 (96)
137 1yn3_A EAP2, truncated cell su 25.6 87 0.003 20.7 3.8 42 31-74 36-78 (98)
138 2khz_A C-MYC-responsive protei 25.6 62 0.0021 22.9 3.4 22 20-41 12-41 (165)
139 1t1j_A Hypothetical protein; s 24.8 24 0.00082 24.4 1.0 10 20-29 9-18 (125)
140 2kdb_A Homocysteine-responsive 24.7 91 0.0031 20.1 3.9 29 52-80 21-51 (99)
141 3kgk_A Arsenical resistance op 24.5 1.6E+02 0.0056 19.7 5.5 62 24-89 17-103 (110)
142 1we6_A Splicing factor, putati 24.1 47 0.0016 21.6 2.4 71 53-134 26-104 (111)
143 2pg3_A Queuosine biosynthesis 23.6 36 0.0012 25.0 1.9 26 75-100 167-201 (232)
144 1yn4_A EAPH1; virulence factor 22.9 1.1E+02 0.0037 20.3 3.9 43 31-75 37-80 (99)
145 1uel_A HHR23B, UV excision rep 22.8 1E+02 0.0035 19.2 3.8 26 56-81 2-27 (95)
146 1wyw_B Ubiquitin-like protein 21.9 1.1E+02 0.0037 19.3 3.8 36 53-88 20-59 (97)
147 3lvu_A ABC transporter, peripl 21.9 14 0.00047 27.5 -0.8 15 30-44 101-115 (258)
148 3j21_O 50S ribosomal protein L 21.8 42 0.0014 25.3 1.9 35 55-93 100-136 (203)
149 2lg4_A Aurelin; antimicrobial 27.4 19 0.00066 20.0 0.0 17 83-100 24-40 (40)
150 2ojr_A Ubiquitin; lanthide-bin 21.5 1.7E+02 0.0058 18.8 4.8 36 53-88 34-73 (111)
151 1ryj_A Unknown; beta/alpha pro 21.4 1.4E+02 0.0047 17.7 4.2 21 67-87 16-36 (70)
152 3rt3_B Ubiquitin-like protein 21.3 2E+02 0.0067 19.5 8.4 75 55-141 3-85 (159)
153 3b08_A Polyubiquitin-C, ubiqui 21.3 1.8E+02 0.0063 19.2 8.5 75 56-141 2-80 (152)
154 1ex0_A Coagulation factor XIII 20.7 28 0.00096 31.1 0.8 19 20-38 404-422 (731)
155 1sif_A Ubiquitin; hydrophobic 20.6 1.6E+02 0.0054 18.0 7.5 71 55-136 10-84 (88)
156 1tke_A Threonyl-tRNA synthetas 20.4 66 0.0023 23.7 2.8 26 56-85 3-28 (224)
157 1li5_A Cysrs, cysteinyl-tRNA s 20.2 1.5E+02 0.0052 24.4 5.2 11 18-28 21-31 (461)
No 1
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.96 E-value=8.6e-29 Score=201.22 Aligned_cols=119 Identities=21% Similarity=0.485 Sum_probs=104.5
Q ss_pred CCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC----------CceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcC
Q 031979 17 RSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA----------MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTG 85 (149)
Q Consensus 17 ~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~----------~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~G 85 (149)
..+.++|+|||.+ |+++++.+.+ |+.+++|+|. ...++|+| ..+| +++++++|+|||++++++|
T Consensus 191 ~~~~~vyvCGP~~m~~~v~~~l~~--~~~~~i~~E~F~~~~~~~~~~~~~~v~~-~~~~--~~~~~~~~~~ll~a~~~~g 265 (321)
T 2pia_A 191 KPAQHVYCCGPQALMDTVRDMTGH--WPSGTVHFESFGATNTNARENTPFTVRL-SRSG--TSFEIPANRSILEVLRDAN 265 (321)
T ss_dssp CTTEEEEEESCHHHHHHHHHHTTT--SCTTCEEEECCCCCCCCCSCCCCEEEEE-TTTC--CEEEECTTSCHHHHHHHTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHh--CCHhhEEEEecCCCCCCCCCCccEEEEE-eCCC--eEEEECCCCcHHHHHHHcC
Confidence 4678999999999 5999999987 8888877552 23578998 5777 7899999999999999999
Q ss_pred CCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEEcCC-eEEEe
Q 031979 86 MELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSD-CVIYT 142 (149)
Q Consensus 86 i~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~~~d-~~I~~ 142 (149)
++++++|+.|.||+|+++|++|++++.+ ..|++++. +|++|+||+++.+| ++|++
T Consensus 266 ~~~~~~C~~G~Cg~C~~~v~~G~~~~~~-~~l~~~e~-~g~~L~C~~~~~~d~~~i~l 321 (321)
T 2pia_A 266 VRVPSSCESGTCGSCKTALCSGEADHRD-MVLRDDEK-GTQIMVCVSRAKSAELVLDL 321 (321)
T ss_dssp CCCCCSCSSSSSCTTEEEEEESCEECCC-SSCCTTTT-TTEEETTTCEESSSEEEECC
T ss_pred CCCCCCCCCCCCCCCEEEEecCcccccc-CCCChHHH-CCeEEEeEeEECCCcEEEeC
Confidence 9999999999999999999999999876 57888777 99999999999998 88764
No 2
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=99.94 E-value=2.1e-26 Score=157.59 Aligned_cols=94 Identities=67% Similarity=1.190 Sum_probs=86.4
Q ss_pred eEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEE
Q 031979 55 YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYP 134 (149)
Q Consensus 55 ~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~ 134 (149)
|+|+|..++| .+++++++|+|||++|+++|++++++|+.|.||+|+++|++|++.+.+...|+++++++|++|+||+++
T Consensus 1 ~~v~~~~~~g-~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~ 79 (94)
T 1awd_A 1 YKVTLKTPSG-EETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYP 79 (94)
T ss_dssp CEEEEEETTE-EEEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEE
T ss_pred CEEEEEeCCC-cEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCCCCEEEEEeCCcCccccccCCHHHHhCCcEEeeECEE
Confidence 5788853555 589999999999999999999999999999999999999999999888888998888899999999999
Q ss_pred cCCeEEEecCCcCCC
Q 031979 135 TSDCVIYTHKESELY 149 (149)
Q Consensus 135 ~~d~~I~~~~~~~~~ 149 (149)
.+|++|++++++++|
T Consensus 80 ~~d~~i~~~~~~~~~ 94 (94)
T 1awd_A 80 TSDVTILTHQEAALY 94 (94)
T ss_dssp SSCEEEECCCGGGGC
T ss_pred CCCEEEEecchhccC
Confidence 999999999999887
No 3
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.94 E-value=3.3e-26 Score=156.40 Aligned_cols=95 Identities=62% Similarity=1.083 Sum_probs=87.5
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeE
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAY 133 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~ 133 (149)
+++|+|..++| .++|++++|+|||++|+++||+++++|+.|.||+|+++|.+|++.+.+...|+++++++|++|+||++
T Consensus 1 ~~~v~~~~~~g-~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~L~~~~~~~g~~LaC~~~ 79 (95)
T 1frr_A 1 AYKTVLKTPSG-EFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAI 79 (95)
T ss_dssp CEEEEEEETTE-EEEEEECTTCCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCE
T ss_pred CeEEEEEeCCC-cEEEEeCCCCcHHHHHHHcCCCCCCCCCCcCCCCCEEEEEeCCccccccccCCHHHHhCCcEEeeECE
Confidence 36788843666 58899999999999999999999999999999999999999999988888999888889999999999
Q ss_pred EcCCeEEEecCCcCCC
Q 031979 134 PTSDCVIYTHKESELY 149 (149)
Q Consensus 134 ~~~d~~I~~~~~~~~~ 149 (149)
+.+|++|++++++.+|
T Consensus 80 ~~~~~~v~~~~~~~~~ 95 (95)
T 1frr_A 80 PESDLVIETHKEEELF 95 (95)
T ss_dssp ESSCEEEECCCTTTTC
T ss_pred ECCCEEEEEcchhhcC
Confidence 9999999999999887
No 4
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=99.93 E-value=6.2e-26 Score=156.27 Aligned_cols=96 Identities=66% Similarity=1.150 Sum_probs=87.3
Q ss_pred eeEEEEEcCCCC-eEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeee
Q 031979 54 VYKVKLIGPNGE-ENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVA 132 (149)
Q Consensus 54 ~~~V~~~~~~G~-~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~ 132 (149)
.++|+|..++|. .++|++++|+|||++++++|++++++|+.|.||+|+++|++|++.+.+...|+++++++|+||+||+
T Consensus 2 ~~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~ 81 (98)
T 1czp_A 2 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVA 81 (98)
T ss_dssp EEEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGC
T ss_pred ceEEEEEeCCCCCcEEEEeCCCCCHHHHHHHcCCCccCCCCCCCCCCCeEEEccCCcCccccccCCHHHhhCCeEEeeeC
Confidence 478888634432 4899999999999999999999999999999999999999999998888889988888999999999
Q ss_pred EEcCCeEEEecCCcCCC
Q 031979 133 YPTSDCVIYTHKESELY 149 (149)
Q Consensus 133 ~~~~d~~I~~~~~~~~~ 149 (149)
++.+|++|++++++++|
T Consensus 82 ~~~~d~~v~~~~~~~~~ 98 (98)
T 1czp_A 82 YPTSDVVIQTHKEEDLY 98 (98)
T ss_dssp EESSCEEEECCCTTTTC
T ss_pred EECCCEEEEeccccccC
Confidence 99999999999999987
No 5
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=99.93 E-value=6.6e-26 Score=155.98 Aligned_cols=95 Identities=59% Similarity=1.122 Sum_probs=86.6
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeE
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAY 133 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~ 133 (149)
.++|+|..++| .+++++++|+|||++|+++|++++++|+.|.||+|+++|++|++.+.+...|+++++++|+||+||++
T Consensus 2 ~~~v~~~~~~~-~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~ 80 (97)
T 1a70_A 2 AYKVTLVTPTG-NVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAY 80 (97)
T ss_dssp EEEEEEEETTE-EEEEEEETTSCHHHHHHHTTCCCCCSSSSSCSSTTEEEEEESCEECTTCCSSCHHHHHHTEEEGGGCE
T ss_pred eEEEEEEeCCc-eEEEEeCCCCcHHHHHHHcCCCcccCCCCcCCCCCeEEEccCCcCccccccCCHHHhhCCeEEEeECE
Confidence 36788853444 57899999999999999999999999999999999999999999988888899888889999999999
Q ss_pred EcCCeEEEecCCcCCC
Q 031979 134 PTSDCVIYTHKESELY 149 (149)
Q Consensus 134 ~~~d~~I~~~~~~~~~ 149 (149)
+.+|++|++++++.+|
T Consensus 81 ~~~d~~v~~~~~~~~~ 96 (97)
T 1a70_A 81 PVSDVTIETHKKEELT 96 (97)
T ss_dssp ESSCEEEECCCGGGCC
T ss_pred ECCCEEEEeCchhhcc
Confidence 9999999999998887
No 6
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=99.92 E-value=9.7e-26 Score=155.39 Aligned_cols=95 Identities=49% Similarity=0.977 Sum_probs=85.6
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeE
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAY 133 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~ 133 (149)
.++|+|. .+|..++|++++|+|||++|+++|++++++|+.|.||+|+++|++|++.+.+...|+++++++|+||+||++
T Consensus 2 ~~~v~~~-~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~ 80 (98)
T 1iue_A 2 FYNITLR-TNDGEKKIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDNDDQSYLDEEQIKKKYILLCTCY 80 (98)
T ss_dssp EEEEEEE-ETTEEEEEEEETTSCHHHHHHHTTCCCCCSSCSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCE
T ss_pred cEEEEEE-eCCCeEEEEeCCCCcHHHHHHHcCCCCCCCCCCCcCCCCEEEEeeCCccccccccCCHHHHhCCeEEEeECE
Confidence 4688885 344357899999999999999999999999999999999999999999988888999888889999999999
Q ss_pred EcCCeEEEecCCcCCC
Q 031979 134 PTSDCVIYTHKESELY 149 (149)
Q Consensus 134 ~~~d~~I~~~~~~~~~ 149 (149)
+.+|++|++++++.+|
T Consensus 81 ~~~d~~i~~~~~~~~~ 96 (98)
T 1iue_A 81 PKSDCVIETHKEDELH 96 (98)
T ss_dssp ESSCEEEECCCHHHHH
T ss_pred ECCCeEEEeCChHhhc
Confidence 9999999999877654
No 7
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=99.92 E-value=2.9e-25 Score=152.74 Aligned_cols=95 Identities=49% Similarity=0.965 Sum_probs=85.2
Q ss_pred eeEEEEEcCCC-CeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeee
Q 031979 54 VYKVKLIGPNG-EENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVA 132 (149)
Q Consensus 54 ~~~V~~~~~~G-~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~ 132 (149)
.++|+|..+++ ..++|++++|+|||++|+++||+++++|+.|.||+|+++|++|++.+.+...|+++++++|++|+||+
T Consensus 2 ~~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaC~~ 81 (98)
T 1frd_A 2 SYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVT 81 (98)
T ss_dssp EEEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEEGGGC
T ss_pred ceEEEEEeCCCCCCEEEEeCCCCcHHHHHHHcCCCcccCCCCCCCCCCEEEEEeCCccccccccCCHHHhhCCcEEEeEC
Confidence 47888853342 14899999999999999999999999999999999999999999998888899988888999999999
Q ss_pred EEcCCeEEEecCCcCC
Q 031979 133 YPTSDCVIYTHKESEL 148 (149)
Q Consensus 133 ~~~~d~~I~~~~~~~~ 148 (149)
++.+|++|++++++.+
T Consensus 82 ~~~~d~~v~~~~~~~~ 97 (98)
T 1frd_A 82 YPRSNCTIKTHQEPYL 97 (98)
T ss_dssp EESSSEEEECCCGGGC
T ss_pred EECCCEEEEecchhhc
Confidence 9999999999988765
No 8
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.92 E-value=2.8e-25 Score=151.73 Aligned_cols=93 Identities=58% Similarity=1.012 Sum_probs=84.3
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeE
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAY 133 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~ 133 (149)
+++|+|..++| .+++++++|+|||++|+++| +++++|+.|.||+|+++|++|.+.+.+...|+++++++|+||+||++
T Consensus 1 ~~~V~~~~~~~-~~~~~~~~g~tlL~a~~~~g-~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~~~~~g~~LaCq~~ 78 (93)
T 1wri_A 1 AYKVTLKTPDG-DITFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAI 78 (93)
T ss_dssp CEEEEEEETTE-EEEEEECTTSCHHHHHHHHS-CCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCE
T ss_pred CEEEEEEECCC-eEEEEECCCCcHHHHHHHCc-CCCCCCCCCCCCCCEEEEecCccCccccccCCHHHHhCCcEEeeeCE
Confidence 36788853444 58899999999999999999 99999999999999999999999988888999888889999999999
Q ss_pred EcCCeEEEecCCcCC
Q 031979 134 PTSDCVIYTHKESEL 148 (149)
Q Consensus 134 ~~~d~~I~~~~~~~~ 148 (149)
+.+|++|++++++++
T Consensus 79 ~~~d~~v~~~~~~~~ 93 (93)
T 1wri_A 79 PESDVVIETHKEDEL 93 (93)
T ss_dssp ESSCEEEECCCGGGC
T ss_pred ECCCEEEEecccccC
Confidence 999999999998764
No 9
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=99.90 E-value=3.4e-24 Score=149.51 Aligned_cols=91 Identities=18% Similarity=0.330 Sum_probs=80.5
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHHHHcCCC-CCCCCC-CcccCCcEEEEeeCcccCC------CCCCCCh-hhccCCe
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTGME-LPYSCR-AGACSTCAGQMVSGSVDQS------DGSFLDD-KQMEKGF 126 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~-i~~~C~-~G~CGtC~v~v~~G~v~~~------~~~~L~~-~~~~~g~ 126 (149)
+|+|+.++|..++|++++|+|||++++++|++ ++++|+ .|.||+|+++|++|++++. +..+|+. +++++|+
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~~gi~~i~~~C~G~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~g~ 81 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPALSGDENDLLDSSDHRTPHS 81 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHHHTTCTTCCCTTCSSSSCSTTEEEECGGGGGGSCCCCHHHHHHHHTSTTCCTTE
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCCCcCCCCCCCCCCCEEEECCcccccCCCCCHHHHHHhccccccCCCc
Confidence 68888889988899999999999999999999 999999 8999999999999987542 2245665 6788999
Q ss_pred EEeeeeEEcCC---eEEEecCCc
Q 031979 127 VLTCVAYPTSD---CVIYTHKES 146 (149)
Q Consensus 127 ~LaCq~~~~~d---~~I~~~~~~ 146 (149)
||+||+++.+| ++|++|+++
T Consensus 82 rLaCq~~~~~dl~gl~v~ip~~~ 104 (104)
T 3lxf_A 82 RLSCQITINDKLEGLEVEIAPED 104 (104)
T ss_dssp EEGGGCBCCGGGTTCEEEECCCC
T ss_pred EEEeeCEEccCCCCEEEEecCCC
Confidence 99999999999 999999875
No 10
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=99.90 E-value=2.3e-24 Score=148.31 Aligned_cols=92 Identities=29% Similarity=0.486 Sum_probs=81.5
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccC--CCCCCCChhhccCCeEEeee
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ--SDGSFLDDKQMEKGFVLTCV 131 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~--~~~~~L~~~~~~~g~~LaCq 131 (149)
+++|+|..+++..++|++++|+|||++|+++|++++++|+.|.||+|+++|++|++.+ .+...|+++++++|+||+||
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~e~~~L~~~~~~~g~~LaCq 83 (98)
T 1jq4_A 4 VHTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGDYDLKGCSVQALPPEEEEEGLVLLCR 83 (98)
T ss_dssp EEEEEEEETTTEEEEEEEESCCTHHHHHHHHTCCCCCSCCSSCCCCCCBCEEECCCCCCCSCTTTSCHHHHHHHCBCTTT
T ss_pred cEEEEEEecCCCcEEEEeCCCChHHHHHHHcCCCCcCCCCCCCCCCCEEEEEcCccccCcccccccCHHHhcCCcEEEee
Confidence 5788885445555899999999999999999999999999999999999999999886 35667888888889999999
Q ss_pred eEEcCCeEEEecCC
Q 031979 132 AYPTSDCVIYTHKE 145 (149)
Q Consensus 132 ~~~~~d~~I~~~~~ 145 (149)
+++.+|++|+++.+
T Consensus 84 ~~~~~d~~v~~~~~ 97 (98)
T 1jq4_A 84 TYPKTDLEIELPYT 97 (98)
T ss_dssp CCSSCCSEEECSCC
T ss_pred CEECCCEEEEecCC
Confidence 99999999999764
No 11
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=99.88 E-value=1.2e-23 Score=151.72 Aligned_cols=96 Identities=17% Similarity=0.342 Sum_probs=83.3
Q ss_pred CCceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCC-CCCCCC-CcccCCcEEEEeeCcccC------CCCCCCC-hhh
Q 031979 51 AMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGME-LPYSCR-AGACSTCAGQMVSGSVDQ------SDGSFLD-DKQ 121 (149)
Q Consensus 51 ~~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~-i~~~C~-~G~CGtC~v~v~~G~v~~------~~~~~L~-~~~ 121 (149)
...|++|+|..++|..++|++++|+|||++|+++||+ ++++|+ .|.||+|+|+|.+|+++. .+...|+ .++
T Consensus 18 ~~~M~~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~gi~~~C~G~G~CgtC~v~v~~G~~~~l~~~~~~E~~~L~~~~e 97 (126)
T 3hui_A 18 GSHMAKINFVDHTGETRTVEVEEGATVMEAAIRNAIPGVEAECGGACACATCHVYVDEAWREKVGGPSPMEEDMLDFGYD 97 (126)
T ss_dssp TCSEEEEEEECTTSCEEEEEEETTSBHHHHHHTTTCTTCCCTTSSSSCCSTTEEEECGGGHHHHCCCCHHHHHHHTTSSS
T ss_pred CCCceEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCCCCCCCCCEEEECCCcccccCCCCHHHhhhcCchhh
Confidence 3568999997688888899999999999999999999 999999 899999999999997542 1334666 367
Q ss_pred ccCCeEEeeeeEEcCC---eEEEecCCc
Q 031979 122 MEKGFVLTCVAYPTSD---CVIYTHKES 146 (149)
Q Consensus 122 ~~~g~~LaCq~~~~~d---~~I~~~~~~ 146 (149)
+++||||+||+++.+| ++|++|+++
T Consensus 98 ~~~g~RLaCQ~~~~~dldgl~V~lp~~~ 125 (126)
T 3hui_A 98 VRPNSRLSCQIKVSNELDGLIVTTPERQ 125 (126)
T ss_dssp CCTTEEEGGGCBCCGGGTTEEEECCSCC
T ss_pred ccCCeEEeeeCEECcCCCcEEEEecCcC
Confidence 7899999999999999 999999875
No 12
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=99.88 E-value=1.7e-23 Score=145.87 Aligned_cols=91 Identities=20% Similarity=0.351 Sum_probs=76.5
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHHHHcCCC-CCCCCC-CcccCCcEEEEeeCcccC------CCCCCCChhh-c-cCC
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTGME-LPYSCR-AGACSTCAGQMVSGSVDQ------SDGSFLDDKQ-M-EKG 125 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~-i~~~C~-~G~CGtC~v~v~~G~v~~------~~~~~L~~~~-~-~~g 125 (149)
+|+|+.++|..++|++++|+|||++|+++||+ ++++|+ .|.||+|+|+|.+|+++. .+...|+..+ . +++
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLeaa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~~g 81 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELKPN 81 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHTTCTTSCCTTCSSSSSCTTEEEECTTTGGGSCCCCHHHHHHHTTCSSCCCTT
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCCcCCCCCcccCcCEEEECCcccccCCCCCHHHHHHhhcccccCCCC
Confidence 68885578877899999999999999999999 999996 899999999999995432 2234566544 6 889
Q ss_pred eEEeeeeEEcC---CeEEEecCCc
Q 031979 126 FVLTCVAYPTS---DCVIYTHKES 146 (149)
Q Consensus 126 ~~LaCq~~~~~---d~~I~~~~~~ 146 (149)
+||+||+++.+ |++|++|+.+
T Consensus 82 ~rLaCq~~~~~d~~~l~v~~p~~~ 105 (106)
T 1xlq_A 82 SRLCCQIIMTPELDGIVVDVPDRQ 105 (106)
T ss_dssp EEEGGGCBCCGGGTTEEEECCSCC
T ss_pred cEeeeeeEeecCCCCEEEEecCcc
Confidence 99999999998 6899998764
No 13
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=99.88 E-value=8.8e-23 Score=143.77 Aligned_cols=94 Identities=22% Similarity=0.317 Sum_probs=77.1
Q ss_pred eeEEEEEcCCC---CeEEEEcCCCchHHHHHHHcCCCCCCCCC-CcccCCcEEEEeeCcccCCC-----CCCCChh-hcc
Q 031979 54 VYKVKLIGPNG---EENEFDAPDDAYIIDSAEDTGMELPYSCR-AGACSTCAGQMVSGSVDQSD-----GSFLDDK-QME 123 (149)
Q Consensus 54 ~~~V~~~~~~G---~~~~~~v~~g~tLLea~~~~Gi~i~~~C~-~G~CGtC~v~v~~G~v~~~~-----~~~L~~~-~~~ 123 (149)
|++|+|...+| ..++|++++|+|||++|+++||+|+++|+ .|.||+|+|+|++|.....+ ...|+.+ +++
T Consensus 1 M~~vt~~~~~g~~~~~~~v~~~~g~tlL~aa~~~Gi~i~~~C~g~G~CgtC~v~v~~G~~~~~~~~~~e~~~L~~~~~~~ 80 (113)
T 3ah7_A 1 MPLVTFLPHEKFCPEGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGFDSLEEADELEEDMLDKAWGLE 80 (113)
T ss_dssp CCEEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTCSSSSCSTTEEEEEESGGGSCCCCHHHHHHHTTSTTCC
T ss_pred CCEEEEEcCCCcCCCCeEEEECCCCcHHHHHHHcCCCCCcCCCCCCCcCCCEEEEcCCcccCCCCCHHHHHhhhcccccC
Confidence 46788864444 44899999999999999999999999999 79999999999999744321 2346544 678
Q ss_pred CCeEEeeeeEEc-CCeEEEecCCcC
Q 031979 124 KGFVLTCVAYPT-SDCVIYTHKESE 147 (149)
Q Consensus 124 ~g~~LaCq~~~~-~d~~I~~~~~~~ 147 (149)
+++||+||+++. +|++|++|.++.
T Consensus 81 ~g~rLaCq~~~~~~dl~v~~~~~~~ 105 (113)
T 3ah7_A 81 AQSRLGCQVFVADEDLTIEIPKYSL 105 (113)
T ss_dssp TTEEEGGGCBCCSSCEEEECCSCCC
T ss_pred CCcEEeeeCEEeCCCEEEEECchhh
Confidence 899999999998 899999987643
No 14
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=99.88 E-value=2.2e-23 Score=145.27 Aligned_cols=92 Identities=27% Similarity=0.402 Sum_probs=77.4
Q ss_pred eEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCC-CCCCCC-CcccCCcEEEEeeCcccCC------CCCCCChh-hcc-C
Q 031979 55 YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGME-LPYSCR-AGACSTCAGQMVSGSVDQS------DGSFLDDK-QME-K 124 (149)
Q Consensus 55 ~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~-i~~~C~-~G~CGtC~v~v~~G~v~~~------~~~~L~~~-~~~-~ 124 (149)
++|+|+.++|..++|++++|+|||++|+++||+ ++++|+ .|.||+|+++|++|++++. +...|+.. +++ +
T Consensus 1 ~~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~~ 80 (106)
T 1uwm_A 1 AKIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNPA 80 (106)
T ss_dssp CEEEEECTTCCEEEEECCTTSBHHHHHHTTTCTTCCCTTSSSSSSCTTEEEECHHHHTTSCCCCHHHHHHHTTSSSCCTT
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCcccCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhcCccccCCC
Confidence 368885578877899999999999999999999 999996 8999999999999965431 23456654 577 8
Q ss_pred CeEEeeeeEEcC---CeEEEecCCc
Q 031979 125 GFVLTCVAYPTS---DCVIYTHKES 146 (149)
Q Consensus 125 g~~LaCq~~~~~---d~~I~~~~~~ 146 (149)
|+||+||+++.+ |++|++|+++
T Consensus 81 g~rLaCq~~~~~d~~~l~v~~p~~~ 105 (106)
T 1uwm_A 81 TSRLTCQIKVTSLLDGLVVHLPEKQ 105 (106)
T ss_dssp TEEEGGGCBCCGGGTTEEEECCSCC
T ss_pred CcEecccCEEccCCCCEEEEecCCC
Confidence 999999999999 5999998765
No 15
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=99.88 E-value=1.7e-23 Score=146.72 Aligned_cols=94 Identities=21% Similarity=0.317 Sum_probs=79.1
Q ss_pred ceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCC-cccCCcEEEEeeCcccCC------CCCCCCh-hhccC
Q 031979 53 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRA-GACSTCAGQMVSGSVDQS------DGSFLDD-KQMEK 124 (149)
Q Consensus 53 ~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~-G~CGtC~v~v~~G~v~~~------~~~~L~~-~~~~~ 124 (149)
.+++|+|+.++|..++|++++|+|||++|+++||+++++|+. |.||+|+++|.+|++++. +...|+. .++++
T Consensus 4 ~m~~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~ 83 (109)
T 2y5c_A 4 DVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDHLDLLPPPEEREDDMLDMAPLLQE 83 (109)
T ss_dssp CEEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCCCTTSSSSSCCTTEEEECHHHHTTSCCCCHHHHHHHHTSTTCCT
T ss_pred CcEEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCcCccEEEECCcchhhcCCCCHHHHHHHhccccCCC
Confidence 467899866788767899999999999999999999999995 999999999999975542 2234552 46788
Q ss_pred CeEEeeeeEEcCC---eEEEecCCc
Q 031979 125 GFVLTCVAYPTSD---CVIYTHKES 146 (149)
Q Consensus 125 g~~LaCq~~~~~d---~~I~~~~~~ 146 (149)
|+||+||+++.+| ++|++|+.+
T Consensus 84 g~rLaCq~~~~~d~~~~~v~ip~~~ 108 (109)
T 2y5c_A 84 NSRLGCQIVLTPELEGAEFTLPKIT 108 (109)
T ss_dssp TEEEGGGCBCCGGGTTCEEECCSCC
T ss_pred CcEeeEEeEEecCCCeEEEEecCCC
Confidence 9999999999997 999998764
No 16
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=99.87 E-value=1.1e-22 Score=140.99 Aligned_cols=91 Identities=24% Similarity=0.330 Sum_probs=77.6
Q ss_pred ceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC-CcccCCcEEEEeeCcccCCCC------CCCCh-hhccC
Q 031979 53 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR-AGACSTCAGQMVSGSVDQSDG------SFLDD-KQMEK 124 (149)
Q Consensus 53 ~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~-~G~CGtC~v~v~~G~v~~~~~------~~L~~-~~~~~ 124 (149)
..++|+|..++|..++|++++|+|||++|+++|++++++|+ .|.||+|+|+|.+|++++... ..|+. ++.++
T Consensus 2 ~~~~v~~~~~~g~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~g~~~~~~~~~~~E~~~L~~~~~~~~ 81 (103)
T 2wlb_A 2 TGIKVFFVTPEGREIMIEGNEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEHYELLDPPEEDEEDMLDLAFGLEE 81 (103)
T ss_dssp CCEEEEEECTTCCEEEEEECTTCBHHHHHHHTTCCCCCTTTTSSCCSTTEEEECHHHHHHSCCCCHHHHHHHTTBTTCCT
T ss_pred CceEEEEEeCCCCEEEEEECCCCHHHHHHHHcCCCcCcCCCCCCCcCCCEEEECCCchhccCCCCHHHHHHHhcccCCCC
Confidence 35789995478877899999999999999999999999999 899999999999998765432 24554 35778
Q ss_pred CeEEeeeeEEcCC---eEEEec
Q 031979 125 GFVLTCVAYPTSD---CVIYTH 143 (149)
Q Consensus 125 g~~LaCq~~~~~d---~~I~~~ 143 (149)
++||+||+++.+| ++|++|
T Consensus 82 g~rLaCq~~~~~d~~~l~v~lp 103 (103)
T 2wlb_A 82 TSRLGCQVLLRKDLDGIRVRIP 103 (103)
T ss_dssp TEEEGGGCBCCGGGTTEEEECC
T ss_pred CcEeeEeeEeCCCCCcEEEEcC
Confidence 9999999999999 999876
No 17
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=99.87 E-value=1e-23 Score=146.74 Aligned_cols=90 Identities=20% Similarity=0.417 Sum_probs=76.8
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHHHHcCCC-CCCCCC-CcccCCcEEEEeeCcc------cCCCCCCCC--hhhccCC
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTGME-LPYSCR-AGACSTCAGQMVSGSV------DQSDGSFLD--DKQMEKG 125 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~-i~~~C~-~G~CGtC~v~v~~G~v------~~~~~~~L~--~~~~~~g 125 (149)
+|+|+.++|..++|++++|+|||++|+++||+ ++++|+ .|.||+|+|+|.+|++ ...+...|+ .+++++|
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~G~~~~l~~~~~~e~~~L~~~~~~~~~g 81 (105)
T 1b9r_A 2 RVVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMTAG 81 (105)
T ss_dssp EEEECCTTTSCEEEECCTTCCTTHHHHHHTCCCCCCSSTTSSCCCCCCCEECTTTHHHHTCCCTTHHHHHHTSCCCCCTT
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCcCcCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhhcccccCCCC
Confidence 68884478877899999999999999999999 999999 7999999999999943 333344666 4677899
Q ss_pred eEEeeeeEEcC---CeEEEecCC
Q 031979 126 FVLTCVAYPTS---DCVIYTHKE 145 (149)
Q Consensus 126 ~~LaCq~~~~~---d~~I~~~~~ 145 (149)
+||+||+++.+ |++|++|++
T Consensus 82 ~rLaCq~~~~~~~~~l~v~~p~~ 104 (105)
T 1b9r_A 82 TRLSCQVFIDPSMDGLIVRVPLP 104 (105)
T ss_dssp BSCGGGCCCCTTSTTEEEECCSC
T ss_pred cEeeeeCEecCCCCcEEEEecCC
Confidence 99999999999 799999865
No 18
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=99.87 E-value=6.4e-23 Score=143.41 Aligned_cols=91 Identities=18% Similarity=0.258 Sum_probs=76.9
Q ss_pred ceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCC--CCCC-CcccCCcEEEEeeCcccCC------CCCCCCh-hhc
Q 031979 53 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELP--YSCR-AGACSTCAGQMVSGSVDQS------DGSFLDD-KQM 122 (149)
Q Consensus 53 ~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~--~~C~-~G~CGtC~v~v~~G~v~~~------~~~~L~~-~~~ 122 (149)
.+++|+|..++|..++|++++|+|||++|+++||+++ +.|+ .|.||+|+|+|.+|+++.. +...|+. .++
T Consensus 5 ~m~~V~~~~~~g~~~~v~~~~g~tLL~aa~~~gi~i~~~~~Cgg~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~ 84 (108)
T 2bt6_A 5 DKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYGL 84 (108)
T ss_dssp CEEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCTTTTTTSSSSSBSTTEEECCHHHHTTSCCCCHHHHHHHTTCTTC
T ss_pred ceEEEEEECCCCCEEEEEECCCChHHHHHHHcCCCCCcccCCCCCcCcCCCEEEECccccccCCCCCHHHHHHHhCcccC
Confidence 4688999657887679999999999999999999999 9998 5999999999999965432 2245664 567
Q ss_pred cCCeEEeeeeEEcC---CeEEEec
Q 031979 123 EKGFVLTCVAYPTS---DCVIYTH 143 (149)
Q Consensus 123 ~~g~~LaCq~~~~~---d~~I~~~ 143 (149)
++|+||+||+++.+ |++|++|
T Consensus 85 ~~g~rLaCq~~~~~d~d~~~V~~p 108 (108)
T 2bt6_A 85 TDRSRLGCQICLTKAMDNMTVRVP 108 (108)
T ss_dssp CTTEEEGGGCBCCGGGTTEEEECC
T ss_pred CCCcEeeEEEEecCCCCCEEEEcC
Confidence 88999999999998 5999876
No 19
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=99.86 E-value=2.6e-22 Score=144.97 Aligned_cols=87 Identities=31% Similarity=0.669 Sum_probs=77.8
Q ss_pred eeEEEEEcCCCCeE-EEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhh-ccCCeEEeee
Q 031979 54 VYKVKLIGPNGEEN-EFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQ-MEKGFVLTCV 131 (149)
Q Consensus 54 ~~~V~~~~~~G~~~-~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~-~~~g~~LaCq 131 (149)
+++|+| ..+| + ++++++|+|||++|+++|++++++|+.|.||+|+++|++|++.+.+...|++++ .++|+||+||
T Consensus 27 m~~i~i-~~~g--~~~v~v~~g~tlL~aa~~~Gi~i~~~C~~G~CgtC~v~v~~G~v~~~e~~~L~~~e~~~~g~rLaCq 103 (128)
T 1doi_A 27 ASDMDL-DDED--YGSLEVNEGEYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDIDMDMQQILSDEEVEDKNVRLTCI 103 (128)
T ss_dssp HHHSCC-CTTT--EEEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEEECCCSSSCHHHHHTSCEEEGGG
T ss_pred ccEEEE-EeCC--cEEEEECCCCcHHHHHHHcCCCCccCCCccCCCCCEeEEecCCcCchhhccCCHhHhccCCEEEEEE
Confidence 456677 4788 6 999999999999999999999999999999999999999999988888899755 6899999999
Q ss_pred eEEcCC-eEEEec
Q 031979 132 AYPTSD-CVIYTH 143 (149)
Q Consensus 132 ~~~~~d-~~I~~~ 143 (149)
+++.+| ++|++.
T Consensus 104 ~~~~~d~i~i~~~ 116 (128)
T 1doi_A 104 GSPDADEVKIVYN 116 (128)
T ss_dssp EEECSSEEEEEEC
T ss_pred eEEcCCeEEEEec
Confidence 999999 877764
No 20
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=99.86 E-value=7.7e-22 Score=138.61 Aligned_cols=94 Identities=23% Similarity=0.383 Sum_probs=75.3
Q ss_pred eeEEEEEcCCC---CeEEEEcCCCchHHHHHHHcCCCCCCCCC-CcccCCcEEEEeeCcccCCCC-----CCCChh-hcc
Q 031979 54 VYKVKLIGPNG---EENEFDAPDDAYIIDSAEDTGMELPYSCR-AGACSTCAGQMVSGSVDQSDG-----SFLDDK-QME 123 (149)
Q Consensus 54 ~~~V~~~~~~G---~~~~~~v~~g~tLLea~~~~Gi~i~~~C~-~G~CGtC~v~v~~G~v~~~~~-----~~L~~~-~~~ 123 (149)
|++|+|...+| ..++|++++|+|||++|+++|++++++|+ .|.||+|+++|.+|++.+... ..|+.. +..
T Consensus 1 M~~i~~~~~~g~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~~G~Cg~C~v~v~~G~~~~~~~~~~e~~~L~~~~~~~ 80 (111)
T 1i7h_A 1 MPKIVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLE 80 (111)
T ss_dssp -CEEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTSSSSCCSTTEEEEEECGGGSCCCCHHHHHHHTTCTTCC
T ss_pred CCEEEEEeCCCcCCCCeEEEeCCCCcHHHHHHHcCCCCcccCCCCCcCCCCEEEEccCcccCCCCCHHHHHHhhhccccC
Confidence 35788854333 34899999999999999999999999995 899999999999998776532 223321 456
Q ss_pred CCeEEeeeeEEc-CCeEEEecCCcC
Q 031979 124 KGFVLTCVAYPT-SDCVIYTHKESE 147 (149)
Q Consensus 124 ~g~~LaCq~~~~-~d~~I~~~~~~~ 147 (149)
+++||+||+++. +|++|++|+++.
T Consensus 81 ~g~rLaCq~~~~~~dl~v~~~~~~~ 105 (111)
T 1i7h_A 81 PESRLSCQARVTDEDLVVEIPRYTI 105 (111)
T ss_dssp TTEEETTTCBCCSSCEEEECCSCCC
T ss_pred CCcEEEEEEEEeCCCEEEEEChHHh
Confidence 799999999995 899999987543
No 21
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=99.85 E-value=1.6e-21 Score=171.40 Aligned_cols=94 Identities=29% Similarity=0.581 Sum_probs=86.9
Q ss_pred CceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC-CcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEee
Q 031979 52 MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR-AGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTC 130 (149)
Q Consensus 52 ~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~-~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaC 130 (149)
|.+++|+|. ++| +++++++|+|||++++++|++++++|+ .|.||+|+++|++|++++.+...|+++++++|+||+|
T Consensus 1 M~m~~V~~~-~sg--~~v~v~~G~tLLeAa~~aGi~ip~~C~G~G~CGtC~v~V~~G~v~~~e~~~Ls~~e~~~G~rLaC 77 (631)
T 3zyy_X 1 MAEYKVLFK-PDQ--KEVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQKRVESYGKLKQEEIAQGYVLAC 77 (631)
T ss_dssp --CEEEEEE-TTT--EEEEECTTSCHHHHHHHHTCCCCCSCCCSSCCSTTEEEEEESCEEESCCTTCCHHHHHTTEEETT
T ss_pred CCceEEEEe-cCC--eEEEECCCCcHHHHHHHcCCCCCcCCCCCCcCCCCEEEEeeCcccccccccCCHHHhcCCcEEee
Confidence 468999995 888 899999999999999999999999999 8999999999999999998888899988999999999
Q ss_pred eeEEcCCeEEEecCCcCC
Q 031979 131 VAYPTSDCVIYTHKESEL 148 (149)
Q Consensus 131 q~~~~~d~~I~~~~~~~~ 148 (149)
|+++.+|++|++|+++++
T Consensus 78 qa~~~sDl~Ielp~~~~~ 95 (631)
T 3zyy_X 78 QTYPESDLIIEIPFDSRL 95 (631)
T ss_dssp TEEECSSEEEECCTTSSC
T ss_pred eCEECCCEEEEecchhhh
Confidence 999999999999988764
No 22
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.85 E-value=4.4e-21 Score=156.09 Aligned_cols=94 Identities=28% Similarity=0.447 Sum_probs=83.5
Q ss_pred CceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccC----CCCCCCChhhccCCeE
Q 031979 52 MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ----SDGSFLDDKQMEKGFV 127 (149)
Q Consensus 52 ~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~----~~~~~L~~~~~~~g~~ 127 (149)
|.+++|+|...+|..+++++++|+|||++|+++|++++++|+.|.||+|+++|++|++.. .+...|+++++++|+|
T Consensus 1 m~~~~v~~~~~~~~~~~~~~~~g~tll~a~~~~gi~i~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~l~~~~~~~g~~ 80 (338)
T 1krh_A 1 MSNHQVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYV 80 (338)
T ss_dssp -CCEEEEEECTTSCEEEEEECTTCCHHHHHHHTTCCCSCSCSSSSSCTTEEEEEECCEECCGGGSCTTTCCHHHHHHTEE
T ss_pred CCceEEEEEEcCCCcEEEEeCCCCcHHHHHHHcCCCcccCCCCcCCCCCEEEEecCcEecccCccccccCCHHHHhCCeE
Confidence 456889986455666999999999999999999999999999999999999999998876 2567899888899999
Q ss_pred EeeeeEEcCCeEEEecCC
Q 031979 128 LTCVAYPTSDCVIYTHKE 145 (149)
Q Consensus 128 LaCq~~~~~d~~I~~~~~ 145 (149)
|+||+++.+|++|+++.+
T Consensus 81 LaCq~~~~~~~~v~~~~~ 98 (338)
T 1krh_A 81 LACQCRPTSDAVFQIQAS 98 (338)
T ss_dssp ETTTCEESSSEEEEESSC
T ss_pred EEEeCEECCCeEEEEecc
Confidence 999999999999999765
No 23
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=99.81 E-value=1.5e-20 Score=128.18 Aligned_cols=80 Identities=20% Similarity=0.413 Sum_probs=68.1
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHHHHcCCC-CCCCCC-CcccCCcEEEEeeCcccCC---CCCCCChhhccCCeEEee
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTGME-LPYSCR-AGACSTCAGQMVSGSVDQS---DGSFLDDKQMEKGFVLTC 130 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~-i~~~C~-~G~CGtC~v~v~~G~v~~~---~~~~L~~~~~~~g~~LaC 130 (149)
+|+| ..+|+.++|++++|+|||++|+++|++ ++++|+ .|.||+|+++|.+|.+.+. +...|+ ++++++||+|
T Consensus 2 ~v~i-~~~g~~~~~~~~~g~tll~a~~~~gi~gi~~~C~G~G~Cg~C~v~v~~g~~~~~~~~e~~~L~--~~~~g~rLaC 78 (93)
T 1l5p_A 2 TITA-VKGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGKVAAAEDDEKEFLE--DQPANARLAC 78 (93)
T ss_dssp EEEE-EETTEEEEEECCTTEEHHHHHHTTTSSCCTTSCSSSSSSCCCEEEEEESCCCCCCHHHHHHHT--TSCTTEEEGG
T ss_pred eEEE-EeCCcEEEEEECCCChHHHHHHHcCCCcCCcCCCCcCCcCCCEEEECCCcCCCCCHHHHHHhc--CCCCCcEEee
Confidence 4666 478866799999999999999999999 999999 9999999999999987643 223455 5788999999
Q ss_pred eeEEcCCe
Q 031979 131 VAYPTSDC 138 (149)
Q Consensus 131 q~~~~~d~ 138 (149)
|+++.+|+
T Consensus 79 q~~~~~d~ 86 (93)
T 1l5p_A 79 AITLSGEN 86 (93)
T ss_dssp GCEECGGG
T ss_pred ECEECCCC
Confidence 99999863
No 24
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=99.79 E-value=1.6e-21 Score=139.94 Aligned_cols=95 Identities=17% Similarity=0.247 Sum_probs=19.5
Q ss_pred CceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCC--CCCC-CcccCCcEEEEeeCcccCC------CCCCCCh-hh
Q 031979 52 MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELP--YSCR-AGACSTCAGQMVSGSVDQS------DGSFLDD-KQ 121 (149)
Q Consensus 52 ~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~--~~C~-~G~CGtC~v~v~~G~v~~~------~~~~L~~-~~ 121 (149)
+.+++|+|+.++|..+++++++|+|||++++++||+++ +.|+ .|.||+|+|+|.+|..... +..+|+. .+
T Consensus 3 ~~~v~Vtf~~~~G~~~~v~~~~G~tLl~aa~~~gi~i~g~~~CgG~g~CgtC~v~v~~~~~~~l~~~~~~E~~~L~~~~~ 82 (123)
T 3n9z_C 3 EDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYG 82 (123)
T ss_dssp ----------------------------------------CTTCSSSSCSTTBC--------------CHHHHHHCC---
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCCCCEeCCCeeEEeccccccCCCCChHHHhhhccccc
Confidence 45788999767887789999999999999999999999 9999 8999999999997543321 2234553 45
Q ss_pred ccCCeEEeeeeEEcC---CeEEEecCCc
Q 031979 122 MEKGFVLTCVAYPTS---DCVIYTHKES 146 (149)
Q Consensus 122 ~~~g~~LaCq~~~~~---d~~I~~~~~~ 146 (149)
+.+++||+||+++.+ |++|++|+..
T Consensus 83 ~~~~~RLaCQ~~v~~~ld~l~V~ip~~~ 110 (123)
T 3n9z_C 83 LTDRSRLGCQICLTKSMDNMTVRVPETV 110 (123)
T ss_dssp -----CBCC-------------------
T ss_pred ccCCeEEeeEeEEccCCCCEEEEECccc
Confidence 678999999999998 8999998764
No 25
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=98.95 E-value=9.7e-10 Score=98.76 Aligned_cols=86 Identities=20% Similarity=0.406 Sum_probs=61.3
Q ss_pred EEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCC------CCcccCCcEEEEeeCcccCCCCCCCChhh-----ccCC
Q 031979 57 VKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSC------RAGACSTCAGQMVSGSVDQSDGSFLDDKQ-----MEKG 125 (149)
Q Consensus 57 V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C------~~G~CGtC~v~v~~G~v~~~~~~~L~~~~-----~~~g 125 (149)
|+| ..|| +++++++|+|||+|++++||.||+.| ..|.|+.|.|+|..+..+......++++. ...+
T Consensus 2 v~i-~idg--~~~~v~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~~~~~~~~g~~~~~~~G~~~~~~~~~ 78 (783)
T 3i9v_3 2 VRV-KVND--RIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQWQPK 78 (783)
T ss_dssp EEE-ECSS--CEEEECTTCBHHHHHHHTTCCCCCSSCCTTSCCCCCSCCSEEEEECC-----------------CCBCSS
T ss_pred eEE-EECC--EEEEeCCCChHHHHHHHhCCCccccCCCCCCCCCcccCCcEEEecccccccccccccccccccccccCCC
Confidence 556 3688 78999999999999999999999999 58999999999953211111111111111 1246
Q ss_pred eEEeeeeEEcCCeEEEecCC
Q 031979 126 FVLTCVAYPTSDCVIYTHKE 145 (149)
Q Consensus 126 ~~LaCq~~~~~d~~I~~~~~ 145 (149)
.+++|++.+..+|+|++.++
T Consensus 79 ~~~aC~t~v~~gm~v~t~~~ 98 (783)
T 3i9v_3 79 LAASCVTAVADGMVVDTLSD 98 (783)
T ss_dssp CEETTTCBCCSSEEEESSSH
T ss_pred cccccCCCCCCCCEEEECCH
Confidence 78999999999999998643
No 26
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=98.92 E-value=2e-09 Score=80.44 Aligned_cols=68 Identities=19% Similarity=0.486 Sum_probs=53.5
Q ss_pred eEEEEEcCCCCeEEEEcCCCchHHHHHHHc-CCC-CCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeee
Q 031979 55 YKVKLIGPNGEENEFDAPDDAYIIDSAEDT-GME-LPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVA 132 (149)
Q Consensus 55 ~~V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi~-i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~ 132 (149)
..|+| ..+|+..++++++|+|||++|+++ |+. ++++|+.|.||+|.|.| +|. .+++|..
T Consensus 10 m~i~~-~ing~~~~~~v~~~~tlL~~Lr~~~gl~g~~~~C~~G~CGaC~V~v-dG~-----------------~v~sC~~ 70 (168)
T 1t3q_A 10 MRISA-TINGKPRVFYVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILI-DGA-----------------PMRSCLT 70 (168)
T ss_dssp EEEEE-EETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEE-TTE-----------------EEEGGGS
T ss_pred ceEEE-EECCEEEEEecCCCCcHHHHHHhcCCCCccccCCCCCCCCCcEEEE-CCC-----------------Eeechhh
Confidence 35666 368877788889999999999997 997 99999999999999987 662 3667777
Q ss_pred EEcC--CeEEE
Q 031979 133 YPTS--DCVIY 141 (149)
Q Consensus 133 ~~~~--d~~I~ 141 (149)
.+.. +..|.
T Consensus 71 ~~~~~~G~~v~ 81 (168)
T 1t3q_A 71 LAVQAEGCSIE 81 (168)
T ss_dssp BGGGGTTCEEE
T ss_pred HHHHhCCCeEE
Confidence 6654 44444
No 27
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=98.72 E-value=2.3e-08 Score=87.12 Aligned_cols=68 Identities=22% Similarity=0.464 Sum_probs=58.3
Q ss_pred EEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC-------CcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEe
Q 031979 57 VKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR-------AGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLT 129 (149)
Q Consensus 57 V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~-------~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~La 129 (149)
|+| ..+| +.+++++|+|||++++++|+.+|+.|+ .|.||.|.|.+ +|. . .+++
T Consensus 2 v~~-~ing--~~v~v~~g~tiL~a~~~~gi~ip~lC~~~~~~~~~G~Cg~C~V~v-~g~---------------~-~~~a 61 (574)
T 3c8y_A 2 KTI-IING--VQFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEV-EGT---------------G-LVTA 61 (574)
T ss_dssp EEE-EETT--EEEEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEE-TTT---------------E-EEEG
T ss_pred eEE-EECC--EEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCcccCCCCEEEe-CCC---------------c-cccc
Confidence 556 3688 889999999999999999999999998 89999999987 331 2 6899
Q ss_pred eeeEEcCCeEEEecC
Q 031979 130 CVAYPTSDCVIYTHK 144 (149)
Q Consensus 130 Cq~~~~~d~~I~~~~ 144 (149)
|++.+.++++|.+.+
T Consensus 62 C~t~v~~gm~V~T~~ 76 (574)
T 3c8y_A 62 CDTLIEDGMIINTNS 76 (574)
T ss_dssp GGCBCCTTCEEESSC
T ss_pred CCCCcccceeEEecc
Confidence 999999999998654
No 28
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=98.57 E-value=4.8e-08 Score=76.10 Aligned_cols=59 Identities=15% Similarity=0.299 Sum_probs=48.3
Q ss_pred eEEEEcCCCchHHHHHHHcC------CCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEEcCC--
Q 031979 66 ENEFDAPDDAYIIDSAEDTG------MELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSD-- 137 (149)
Q Consensus 66 ~~~~~v~~g~tLLea~~~~G------i~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~~~d-- 137 (149)
.+++++++|+|||++|+++| +...++|+.|.||+|.|+| +|. .+++|++.+...
T Consensus 25 ~~~~~~~~~~tll~al~~~~~~~~p~l~~~~~c~~G~Cg~C~v~v-~G~-----------------~~~aC~~~~~~~~~ 86 (243)
T 1kf6_B 25 FYEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMV-NNV-----------------PKLACKTFLRDYTD 86 (243)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTCTTCCCCCCCSSSSSCCCEEEE-TTE-----------------EEEGGGCBGGGCTT
T ss_pred EEEEecCCCChHHHHHHHcCcccCCCcccccCCCCCcCCCCEeEE-CCE-----------------EEeeeeeEHhhCCC
Confidence 36888999999999999998 3367799999999999985 663 388999888766
Q ss_pred -eEEEe
Q 031979 138 -CVIYT 142 (149)
Q Consensus 138 -~~I~~ 142 (149)
++|+-
T Consensus 87 ~~~i~~ 92 (243)
T 1kf6_B 87 GMKVEA 92 (243)
T ss_dssp CEEEEC
T ss_pred cEEEEe
Confidence 77754
No 29
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=98.52 E-value=7.6e-08 Score=74.91 Aligned_cols=53 Identities=21% Similarity=0.483 Sum_probs=42.6
Q ss_pred eEEEEcCCCchHHHHHHHcC------CCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEEcC
Q 031979 66 ENEFDAPDDAYIIDSAEDTG------MELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTS 136 (149)
Q Consensus 66 ~~~~~v~~g~tLLea~~~~G------i~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~~~ 136 (149)
++++++++|+|||++|++.| +...++|+.|+||+|.++| +|.+ +|+|++.+..
T Consensus 25 ~~~v~~~~~~tlL~~l~~~~~~~~~~l~~~~~c~~g~Cg~C~v~i-~G~~-----------------~~aC~~~~~~ 83 (241)
T 2bs2_B 25 EYKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMI-NGRP-----------------SLACRTLTKD 83 (241)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHTCTTCCCCCSSSSSSSCTTEEEE-TTEE-----------------EEGGGCBGGG
T ss_pred EEEEeCCCCChHHHHHHHhchhcCCCCccCCCCCCCCCCCCEeEE-CCCe-----------------ecchhCcHhH
Confidence 36788899999999999864 3466799999999999998 7743 4778877654
No 30
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=98.51 E-value=1.8e-07 Score=69.39 Aligned_cols=62 Identities=24% Similarity=0.492 Sum_probs=49.9
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeE
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAY 133 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~ 133 (149)
.|+| ..||+..++++++++|||++|++. |+ ....+|+.|.||+|.|.| +|. .+++|...
T Consensus 4 ~i~~-~vNG~~~~v~~~~~~tLL~~Lr~~~gl~g~k~gC~~G~CGaCtV~v-dG~-----------------~v~sC~~~ 64 (161)
T 1rm6_C 4 ILRL-TLNGRAREDLVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLV-DDR-----------------PRLACSTL 64 (161)
T ss_dssp EEEE-EETTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSSSSSSCTTEEEE-TTE-----------------EEEGGGSB
T ss_pred eEEE-EECCEEEEEecCCcCcHHHHHHHcCCCcccccCCCCCCCCCCEEEE-CCc-----------------EEechHHH
Confidence 5777 479977777789999999999997 76 589999999999999976 552 36777776
Q ss_pred EcC
Q 031979 134 PTS 136 (149)
Q Consensus 134 ~~~ 136 (149)
+..
T Consensus 65 ~~~ 67 (161)
T 1rm6_C 65 AHQ 67 (161)
T ss_dssp GGG
T ss_pred HHH
Confidence 654
No 31
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=98.49 E-value=2.2e-07 Score=69.03 Aligned_cols=52 Identities=21% Similarity=0.518 Sum_probs=44.3
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEeeC
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMVSG 107 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~~G 107 (149)
...|+| ..||+.++++++++++||++|++. |+ ...++|+.|.||+|.|.| .|
T Consensus 3 ~~~i~~-~vNG~~~~v~v~p~~tLLd~LR~~lgltgtk~gC~~G~CGACtV~v-dG 56 (160)
T 3hrd_D 3 KITINL-NLNGEARSIVTEPNKRLLDLLREDFGLTSVKEGCSEGECGACTVIF-NG 56 (160)
T ss_dssp CEEEEE-EETTEEEEEEECSSSBHHHHHHTTSCCTTSCCSSSSSSSCTTEEEE-TT
T ss_pred cceEEE-EECCEEEEEecCCCCCHHHHHHHhcCCCccccccCCCCCCCCEEEE-CC
Confidence 346777 478987888999999999999986 87 589999999999999976 45
No 32
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=98.46 E-value=3e-07 Score=68.61 Aligned_cols=51 Identities=18% Similarity=0.378 Sum_probs=43.0
Q ss_pred eEEEEEcCCCCeEEEEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEeeC
Q 031979 55 YKVKLIGPNGEENEFDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMVSG 107 (149)
Q Consensus 55 ~~V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~~G 107 (149)
..|+| ..||+.+++++++++|||++|++. |+ ...++|+.|.||+|.|.| +|
T Consensus 4 ~~i~~-~vNG~~~~~~v~~~~tLLd~LR~~lgl~g~k~gC~~G~CGaCtV~v-dG 56 (166)
T 1n62_A 4 AHIEL-TINGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDL-DG 56 (166)
T ss_dssp EEEEE-EETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE-TT
T ss_pred ceEEE-EECCEEEEEecCCCCcHHHHHHHcCCCCccccCCCCCCCCCCEEEE-CC
Confidence 45777 478987888899999999999985 66 479999999999999976 55
No 33
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=98.44 E-value=3.7e-07 Score=67.96 Aligned_cols=51 Identities=16% Similarity=0.399 Sum_probs=42.8
Q ss_pred eEEEEEcCCCCeEEEEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEeeC
Q 031979 55 YKVKLIGPNGEENEFDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMVSG 107 (149)
Q Consensus 55 ~~V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~~G 107 (149)
..|+| ..||+.+++++++++|||++|++. |+ ..+++|+.|.||+|.|.| +|
T Consensus 4 ~~i~~-~vNG~~~~~~v~~~~tLLd~LR~~lgltg~k~gC~~G~CGaCtV~v-dG 56 (163)
T 1ffv_A 4 KIITV-NVNGKAQEKAVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDI-DG 56 (163)
T ss_dssp EEEEE-EETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE-TT
T ss_pred ceEEE-EECCEEEEEecCCCCcHHHHHHhcCCCcccccCCCCCCCCCCEEEE-CC
Confidence 35777 378977888899999999999984 66 479999999999999976 55
No 34
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=98.35 E-value=3.6e-07 Score=70.91 Aligned_cols=41 Identities=24% Similarity=0.519 Sum_probs=35.7
Q ss_pred EEEEcCC--CchHHHHHHHcC-----CCCCCCCCCcccCCcEEEEeeCc
Q 031979 67 NEFDAPD--DAYIIDSAEDTG-----MELPYSCRAGACSTCAGQMVSGS 108 (149)
Q Consensus 67 ~~~~v~~--g~tLLea~~~~G-----i~i~~~C~~G~CGtC~v~v~~G~ 108 (149)
+++++++ |+|||++|++.+ +...++|+.|.||+|.|.| +|.
T Consensus 23 ~~v~~~~~~~~tll~~l~~~~~~~~~l~~~~~C~~g~Cg~C~v~v-~G~ 70 (238)
T 2wdq_B 23 YTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNM-NGK 70 (238)
T ss_dssp EEEECCTTCCCBHHHHHHHHHHHCTTCCCCCSSSSSSSCTTEEEE-TTE
T ss_pred EEeecCCCCCChHHHHHHHhcccCCCccccccCCCCCCCCCEEEE-CCE
Confidence 6788888 999999999987 5678899999999999987 563
No 35
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=98.17 E-value=1.6e-06 Score=68.03 Aligned_cols=53 Identities=25% Similarity=0.515 Sum_probs=41.8
Q ss_pred eEEEEcCC-CchHHHHHHHcC------CCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEEcC
Q 031979 66 ENEFDAPD-DAYIIDSAEDTG------MELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTS 136 (149)
Q Consensus 66 ~~~~~v~~-g~tLLea~~~~G------i~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~~~ 136 (149)
++++++++ |+|||++|++.+ +...++|+.|.||+|.|.| +|. .+|+|++.+..
T Consensus 32 ~~~v~~~~~~~tlLd~l~~~~~~~~p~l~~~~~c~~g~Cg~C~v~i-~G~-----------------~~~aC~~~~~~ 91 (252)
T 2h88_B 32 TYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNI-AGG-----------------NTLACTKKIDP 91 (252)
T ss_dssp EEEEEGGGSCSBHHHHHHHHHHHTCTTCCCCCSCSSSSSCTTEEEE-TTE-----------------EEEGGGSBCCC
T ss_pred EEEEecCCCCChHHHHHHHhCcccCCCccccCCCCCCCCCCCEEEE-CCc-----------------EEccccCCHhH
Confidence 35677778 999999999986 2356699999999999985 663 47788887654
No 36
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Probab=97.66 E-value=3.9e-05 Score=57.02 Aligned_cols=49 Identities=18% Similarity=0.416 Sum_probs=39.8
Q ss_pred EEEEEcCCCCeE-EEEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEe
Q 031979 56 KVKLIGPNGEEN-EFDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMV 105 (149)
Q Consensus 56 ~V~~~~~~G~~~-~~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~ 105 (149)
.|+| ..||+.+ .++++++++||++|++. |+ ....+|+.|.||.|-|.|-
T Consensus 4 ~i~~-~vNG~~~~~~~~~p~~~Ll~~LR~~lgltGtK~GC~~G~CGACTVlvd 55 (164)
T 3nvw_A 4 ELVF-FVNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLS 55 (164)
T ss_dssp CEEE-EETTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEE
T ss_pred eEEE-EECCEEEEEecCCCCCCHHHHHHHHcCCCCcCCCcCCCCCCCCEEEEc
Confidence 3666 3688543 45789999999999985 76 5999999999999999774
No 37
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=97.65 E-value=2e-05 Score=61.33 Aligned_cols=36 Identities=19% Similarity=0.129 Sum_probs=30.9
Q ss_pred CCCCCeEEEcCCch-HHHHHHHHH-HcCCCCCcccccC
Q 031979 16 PRSKKFSLVKSPAS-LGSTRSVSK-AFGLKCSSFKASA 51 (149)
Q Consensus 16 ~~~~~~~y~CGP~~-m~~v~~~~~-~~g~~~~~f~~~~ 51 (149)
|..+.++|+|||.+ |+++++.+. ++|++.+++|++.
T Consensus 188 ~~~~~~vy~CGP~~m~~av~~~l~~~~G~~~~~i~~e~ 225 (252)
T 2gpj_A 188 LAGEPAVWIACEFNSMRALRRHFKQAHALPKSHFYTSS 225 (252)
T ss_dssp CSSCEEEEEEEEHHHHHHHHHHHHHHCCCCGGGEEEEE
T ss_pred CCCCcEEEEEcCHHHHHHHHHHHHHhcCCCHHHeEEEE
Confidence 34567899999999 699999998 8999999998763
No 38
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=97.63 E-value=6.4e-05 Score=64.03 Aligned_cols=48 Identities=17% Similarity=0.388 Sum_probs=41.0
Q ss_pred EEEEEcCCCCeEEE-EcCCCchHHHHHHHcCC-CCCCCCCCcccCCcEEEE
Q 031979 56 KVKLIGPNGEENEF-DAPDDAYIIDSAEDTGM-ELPYSCRAGACSTCAGQM 104 (149)
Q Consensus 56 ~V~~~~~~G~~~~~-~v~~g~tLLea~~~~Gi-~i~~~C~~G~CGtC~v~v 104 (149)
.|+| ..||+.+++ +++++++||++|++.|+ ....+|+.|.||.|-|.|
T Consensus 2 ~~~~-~vNg~~~~~~~~~~~~~Ll~~Lr~~~l~g~k~gC~~G~CGaCtV~v 51 (462)
T 2w3s_A 2 EIAF-LLNGETRRVRIEDPTQSLLEWLRAEGLTGTKEGCNEGDCGACTVMI 51 (462)
T ss_dssp EEEE-EETTEEEEEECSCTTCBHHHHHHHTTCTTSCCSCSSSSSCTTEEEE
T ss_pred cEEE-EECCEEEEEecCCCCCcHHHHHHHcCCCccCCCCCCCCcCCcEEEE
Confidence 4677 378977777 77899999999997687 499999999999999987
No 39
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=97.63 E-value=8e-05 Score=57.87 Aligned_cols=56 Identities=13% Similarity=0.179 Sum_probs=39.8
Q ss_pred ccccCCCCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccCCceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCC
Q 031979 11 LFQAAPRSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELP 89 (149)
Q Consensus 11 ~~~~~~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~ 89 (149)
+++...+++.++|+|||.+ |+++++ +.+.|++ ..|.+ +. .
T Consensus 183 ~l~~~~~~~~~vyvCGp~~m~~~v~~-l~~~gv~-----------~~vs~------------e~---------------~ 223 (262)
T 1ep3_B 183 LMNEIDFEVDALYTCGAPAMLKAVAK-KYDQLER-----------LYISM------------ES---------------R 223 (262)
T ss_dssp HHHHCCSCCSEEEEESCHHHHHHHHH-HTTTCSS-----------EEEEC------------CC---------------C
T ss_pred HHHhhccCCCEEEEECCHHHHHHHHH-HHhCCCC-----------EEEEe------------cc---------------c
Confidence 3444333468999999999 599999 9877775 11221 11 3
Q ss_pred CCCCCcccCCcEEEEe
Q 031979 90 YSCRAGACSTCAGQMV 105 (149)
Q Consensus 90 ~~C~~G~CGtC~v~v~ 105 (149)
-.|+.|.||.|.+.+.
T Consensus 224 m~CG~G~C~~C~~~~~ 239 (262)
T 1ep3_B 224 MACGIGACYACVEHDK 239 (262)
T ss_dssp CSSSSSSSCTTEEEET
T ss_pred ccCcccccccCCcccc
Confidence 6899999999999763
No 40
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=97.59 E-value=4.8e-05 Score=57.73 Aligned_cols=34 Identities=3% Similarity=-0.085 Sum_probs=30.0
Q ss_pred CCCCeEEEcCCch-HHHHHHHH-HHcCCCCCccccc
Q 031979 17 RSKKFSLVKSPAS-LGSTRSVS-KAFGLKCSSFKAS 50 (149)
Q Consensus 17 ~~~~~~y~CGP~~-m~~v~~~~-~~~g~~~~~f~~~ 50 (149)
..+.++|+|||.+ |+++++.+ +++|++.+++|+|
T Consensus 192 ~~~~~vyvCGp~~m~~~v~~~l~~~~g~~~~~i~~E 227 (232)
T 1qfj_A 192 LAEHDIYIAGRFEMAKIARDLFCSERNAREDRLFGD 227 (232)
T ss_dssp CTTCEEEEESCHHHHHHHHHHHHHHSCCCGGGEECT
T ss_pred ccccEEEEECCHHHHHHHHHHHHHHcCCCHHHEEEe
Confidence 3568899999999 59999999 9999999998866
No 41
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=97.56 E-value=3.7e-05 Score=58.65 Aligned_cols=39 Identities=10% Similarity=0.063 Sum_probs=33.3
Q ss_pred cCCCCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccCC
Q 031979 14 AAPRSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASAM 52 (149)
Q Consensus 14 ~~~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~~ 52 (149)
..+..+.+||+|||.+ |+++++.+.++|++.+++|+|..
T Consensus 196 ~~~~~~~~vyvCGp~~m~~~v~~~l~~~g~~~~~i~~E~F 235 (243)
T 4eh1_A 196 ILPIEDGDFYLCGPIGFMQYVVKQLLALGVDKARIHYEVF 235 (243)
T ss_dssp CCCTTTCEEEEEECHHHHHHHHHHHHHHTCCGGGEEEEEC
T ss_pred eccCCCcEEEEECCHHHHHHHHHHHHHcCCCHHHEEEecc
Confidence 3455778999999999 59999999999999999987743
No 42
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=97.50 E-value=0.00013 Score=66.61 Aligned_cols=50 Identities=22% Similarity=0.497 Sum_probs=43.2
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEeeC
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMVSG 107 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~~G 107 (149)
+|+| ..||+.++++++++++||++|++. |+ ....+|+.|.||+|-|.| +|
T Consensus 3 ~~~~-~~ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~g~CGaCtv~v-dg 54 (907)
T 1vlb_A 3 QKVI-TVNGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVIL-DG 54 (907)
T ss_dssp EEEE-EETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEE-TT
T ss_pred eEEE-EECCEEEEEecCCCChHHHHHHHhcCCCeecCCCCCCCcCccEEEE-CC
Confidence 5777 479988889999999999999984 66 689999999999999976 55
No 43
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=97.48 E-value=6.9e-05 Score=57.62 Aligned_cols=34 Identities=6% Similarity=0.083 Sum_probs=30.4
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA 51 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~ 51 (149)
.+.++|+|||.+ |+++++.+.++|++.+++|+|.
T Consensus 209 ~~~~vyvCGp~~m~~~v~~~l~~~G~~~~~i~~e~ 243 (250)
T 1tvc_A 209 ANPDIYLCGPPGMIDAACELVRSRGIPGEQVFFEK 243 (250)
T ss_dssp SSSEEEEESSHHHHHHHHHHHHHHCCCCSEEEECC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHcCCCHHHEEEEe
Confidence 567899999999 5999999999999999988764
No 44
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=97.44 E-value=9.2e-05 Score=60.77 Aligned_cols=34 Identities=12% Similarity=0.102 Sum_probs=30.9
Q ss_pred CCeEEEcCCch-HHHHHHHHHHcCCCCCcccccCC
Q 031979 19 KKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASAM 52 (149)
Q Consensus 19 ~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~~ 52 (149)
+.++|+|||.+ |+++++.|.++|++.+++|+|..
T Consensus 356 ~~~vyvCGp~~m~~~v~~~L~~~Gv~~~~i~~E~F 390 (396)
T 1gvh_A 356 TMQFYLCGPVGFMQFTAKQLVDLGVKQENIHYECF 390 (396)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHTTCCGGGEEEECS
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCCHHHEEEecc
Confidence 78999999999 69999999999999999987753
No 45
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=97.41 E-value=6.2e-05 Score=61.98 Aligned_cols=33 Identities=3% Similarity=-0.100 Sum_probs=30.7
Q ss_pred CCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979 19 KKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA 51 (149)
Q Consensus 19 ~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~ 51 (149)
+.++|+|||.+ |+++++.|.++|++.+++|+|.
T Consensus 356 ~~~vyvCGp~~m~~~v~~~L~~~Gv~~~~i~~E~ 389 (399)
T 4g1v_A 356 HADVYTCGSLAFMQAMIGHLKELEHRDDMIHYEP 389 (399)
T ss_dssp SCEEEEEECHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCHHHeeeec
Confidence 88999999999 6999999999999999998874
No 46
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=97.40 E-value=8.9e-05 Score=60.97 Aligned_cols=34 Identities=9% Similarity=0.151 Sum_probs=30.9
Q ss_pred CCeEEEcCCch-HHHHHHHHHHcCCCCCcccccCC
Q 031979 19 KKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASAM 52 (149)
Q Consensus 19 ~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~~ 52 (149)
+.++|+|||.+ |+++++.|.++|++.+++|+|..
T Consensus 362 ~~~vyvCGp~~m~~~v~~~L~~~Gv~~~~i~~E~F 396 (403)
T 1cqx_A 362 DADYYICGPIPFMRMQHDALKNLGIHEARIHYEVF 396 (403)
T ss_dssp TCEEEEESSHHHHHHHHHHHHHTTCCGGGEEECCC
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCCHHHeEEeee
Confidence 78999999999 69999999999999999987753
No 47
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=97.37 E-value=0.00017 Score=65.93 Aligned_cols=50 Identities=18% Similarity=0.418 Sum_probs=43.3
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEeeC
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMVSG 107 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~~G 107 (149)
+|+| ..||+.++++++++++||++|++. |+ ....+|+.|.||+|-|.| +|
T Consensus 3 ~~~~-~~ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~G~CGaCtv~v-dg 54 (907)
T 1dgj_A 3 TKTL-IVNGMARRLLVSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVIL-DG 54 (907)
T ss_dssp EEEC-EETTBCCEEEECTTCBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEE-TT
T ss_pred eEEE-EECCEEEEEecCCCCcHHHHHHHhcCCCccCCCCCCCCcCceEEEE-CC
Confidence 5777 478988899999999999999984 76 699999999999999976 55
No 48
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=97.36 E-value=7e-05 Score=58.65 Aligned_cols=34 Identities=6% Similarity=0.081 Sum_probs=30.0
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA 51 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~ 51 (149)
.+.++|+|||.+ |+++++.|.++|++.+++++|.
T Consensus 254 ~~~~vyvCGp~~m~~~v~~~l~~~G~~~~~i~~e~ 288 (290)
T 2r6h_A 254 EDIEYYMCGPGPMANAVKGMLENLGVPRNMLFFDD 288 (290)
T ss_dssp GGEEEEEECCHHHHHHHHHHHHHHTCCGGGEEEEC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcCCCHHHEEecc
Confidence 457899999999 5999999999999999988764
No 49
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=97.33 E-value=0.00011 Score=56.07 Aligned_cols=31 Identities=10% Similarity=0.079 Sum_probs=27.6
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHcCCCCCccc
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFK 48 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~ 48 (149)
.+.++|+|||.+ |+++++.+.++|++.++++
T Consensus 210 ~~~~vy~CGp~~m~~~v~~~l~~~G~~~~~i~ 241 (243)
T 2eix_A 210 SDIKVMMCGPPMMNKAMQGHLETLGYTPEQWF 241 (243)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHHHTCCGGGEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCCHHHEE
Confidence 457899999999 5999999999999998865
No 50
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=97.31 E-value=0.00011 Score=53.38 Aligned_cols=32 Identities=13% Similarity=0.208 Sum_probs=26.2
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHcCCCCCccccc
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKAS 50 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~ 50 (149)
...+||+|||.+ |+++++.+++.||+ ..+++|
T Consensus 112 ~~~~vy~CGP~~mm~~v~~~l~~~Gv~-~~vslE 144 (158)
T 3lrx_A 112 DWDLVFMVGPVGDQKQVFEVVKEYGVP-MKVDLH 144 (158)
T ss_dssp CCSEEEEESCHHHHHHHHHHHGGGTCC-EEECC-
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCC-EEEEee
Confidence 346899999999 69999999999998 455655
No 51
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=97.30 E-value=0.00014 Score=56.04 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=25.8
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHcCCCCC
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCS 45 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~ 45 (149)
.+.++|+|||.+ |+++++.+.++|++.+
T Consensus 211 ~~~~vyvCGp~~m~~~v~~~l~~~G~~~~ 239 (257)
T 2qdx_A 211 QDDRAMICGSPSMLEETSAVLDSFGLKIS 239 (257)
T ss_dssp TTEEEEEEECHHHHHHHHHHHHHTTCCBC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCChH
Confidence 568899999999 5999999999999988
No 52
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=97.29 E-value=0.00021 Score=57.25 Aligned_cols=42 Identities=24% Similarity=0.536 Sum_probs=33.4
Q ss_pred eEEEEcCC-CchHHHHHHHcCC------CCCCCCCCcccCCcEEEEeeCc
Q 031979 66 ENEFDAPD-DAYIIDSAEDTGM------ELPYSCRAGACSTCAGQMVSGS 108 (149)
Q Consensus 66 ~~~~~v~~-g~tLLea~~~~Gi------~i~~~C~~G~CGtC~v~v~~G~ 108 (149)
..++++++ |+|||++|++.+. ....+|+.|.||+|.|.| +|.
T Consensus 56 ~~~v~v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~~G~CGsC~V~I-nG~ 104 (282)
T 3vr8_B 56 KFDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNI-AGE 104 (282)
T ss_pred EEEEEeCCCCCcHHHHHHhcCcccCCceeecCCCCCCCCCCCEEEE-CCE
Confidence 35677787 9999999998654 345789999999999975 664
No 53
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=97.21 E-value=0.00011 Score=59.02 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=30.6
Q ss_pred CCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979 17 RSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA 51 (149)
Q Consensus 17 ~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~ 51 (149)
..+.++|+|||.+ |+++++.+.++|++.++||++.
T Consensus 299 ~~~~~vy~CGp~~m~~~v~~~l~~~G~~~~~i~~e~ 334 (338)
T 1krh_A 299 GGEVDVYLCGPVPMVEAVRSWLDTQGIQPANFLFEK 334 (338)
T ss_dssp GGCSEEEEEEEHHHHHHHHHHHHHHTCCCSEEEEEE
T ss_pred cCCcEEEEECCHHHHHHHHHHHHHcCCCHHHEEEEe
Confidence 3567899999999 5999999999999999988763
No 54
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=97.19 E-value=0.00022 Score=54.57 Aligned_cols=34 Identities=3% Similarity=0.026 Sum_probs=29.2
Q ss_pred CCCCCeEEEcCCch-HHHHHHHH-HHcCCCCCcccc
Q 031979 16 PRSKKFSLVKSPAS-LGSTRSVS-KAFGLKCSSFKA 49 (149)
Q Consensus 16 ~~~~~~~y~CGP~~-m~~v~~~~-~~~g~~~~~f~~ 49 (149)
+..+..+|+|||.+ |+++++.+ .++|++.++++.
T Consensus 203 ~~~~~~vy~CGp~~m~~~v~~~l~~~~G~~~~~i~~ 238 (248)
T 1fdr_A 203 NKETSHVMLCGNPQMVRDTQQLLKETRQMTKHLRRR 238 (248)
T ss_dssp CTTTEEEEEEECHHHHHHHHHHHHHHHCCCBCBTTB
T ss_pred CccCCEEEEeCCHHHHHHHHHHHHHHcCCChHHcCC
Confidence 34678899999999 59999999 999999988654
No 55
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=97.18 E-value=0.00025 Score=50.68 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=23.9
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHcCCCC
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAFGLKC 44 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~ 44 (149)
....+|+|||.+ |+++.+.+++.||+.
T Consensus 107 ~~~~vy~CGP~~Mm~av~~~l~~~~~~~ 134 (142)
T 3lyu_A 107 DWDLVFMVGPVGDQKQVFEVVKEYGVPM 134 (142)
T ss_dssp CCSEEEEESCHHHHHHHHHHHHHHTCCB
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCch
Confidence 345799999999 699999999999985
No 56
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=97.07 E-value=0.00016 Score=56.28 Aligned_cols=31 Identities=10% Similarity=0.098 Sum_probs=27.4
Q ss_pred CCCeEEEcCCch-HH-HHHHHHHHcCCCCCccc
Q 031979 18 SKKFSLVKSPAS-LG-STRSVSKAFGLKCSSFK 48 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~-~v~~~~~~~g~~~~~f~ 48 (149)
.+.++|+|||.+ |+ ++++.|.++|++.++++
T Consensus 241 ~~~~vyvCGp~~m~~~~v~~~L~~~G~~~~~I~ 273 (275)
T 1umk_A 241 EEPLVLMCGPPPMIQYACLPNLDHVGHPTERCF 273 (275)
T ss_dssp GCCEEEEESCHHHHHHTTHHHHHHHTCCGGGEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHcCCCHHHEE
Confidence 568899999999 58 89999999999998865
No 57
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=97.05 E-value=0.00033 Score=54.61 Aligned_cols=32 Identities=13% Similarity=0.137 Sum_probs=28.3
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHcCCCCCcccc
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKA 49 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~ 49 (149)
.+.++|+|||.+ |+++++.|.++|++.++++.
T Consensus 225 ~~~~vyvCGp~~m~~~v~~~l~~~G~~~~~i~~ 257 (272)
T 2bgi_A 225 ETDRAMVCGSLAFNVDVMKVLESYGLREGANSE 257 (272)
T ss_dssp TTEEEEEEECHHHHHHHHHHHHTTTCCBCBTTB
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcCCChHHcCC
Confidence 568899999999 59999999999999987654
No 58
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=97.04 E-value=0.00041 Score=53.83 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=29.5
Q ss_pred CCCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccc
Q 031979 16 PRSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKA 49 (149)
Q Consensus 16 ~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~ 49 (149)
+..+..+|+|||.+ |+++++.+.+.|++.++++.
T Consensus 225 ~~~~~~v~vCGp~~m~~~v~~~l~~~gv~~~~i~~ 259 (271)
T 4fk8_A 225 SPEQDRVMLCGSTAMLKDTTELLKKAGLVEGKNSA 259 (271)
T ss_dssp CTTTEEEEEEECHHHHHHHHHHHHHTTCCBCBTTB
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHcCCchhhcCC
Confidence 34678899999999 59999999999999988654
No 59
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=96.83 E-value=0.00031 Score=56.35 Aligned_cols=33 Identities=12% Similarity=-0.077 Sum_probs=26.2
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHcCC----CCCccccc
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAFGL----KCSSFKAS 50 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~g~----~~~~f~~~ 50 (149)
.+.+||+|||.+ |+++++++.++|+ +.+++|+|
T Consensus 277 ~~~~vyvCGP~~m~~~v~~~l~~~G~~~~v~~~rih~E 314 (316)
T 3jqq_A 277 YKCELYICGKKSIRYKVMDILKSHDQFDEKKKKRVHVE 314 (316)
T ss_dssp TCCEEEEEECSTHHHHHHHHHHC----CHHHHTTEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCCcccccccEEEE
Confidence 578999999999 5999999999995 77788875
No 60
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=96.79 E-value=0.00078 Score=48.77 Aligned_cols=26 Identities=8% Similarity=-0.018 Sum_probs=23.2
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHcCCC
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAFGLK 43 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~ 43 (149)
.+..||+|||.+ |+++++.+.+.|+.
T Consensus 146 ~~~~v~~CGP~~m~~~v~~~l~~~g~~ 172 (186)
T 3a1f_A 146 TRIGVFLCGPEALAETLSKQSISNSES 172 (186)
T ss_dssp CEEEEEEESCHHHHHHHHHHHHHTCCC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHhhcc
Confidence 467899999999 59999999999984
No 61
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=96.66 E-value=0.00047 Score=53.32 Aligned_cols=31 Identities=6% Similarity=0.059 Sum_probs=25.6
Q ss_pred CCCeEEEcCCch-HHH-HHHHHHHcCCCCCccc
Q 031979 18 SKKFSLVKSPAS-LGS-TRSVSKAFGLKCSSFK 48 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~-v~~~~~~~g~~~~~f~ 48 (149)
.+..+|+|||.+ |++ +++.|.++|++.++++
T Consensus 235 ~~~~vyvCGp~~m~~~~~~~~L~~~G~~~~~i~ 267 (270)
T 2cnd_A 235 DDTLALACGPPPMIQFAISPNLEKMKYDMANSF 267 (270)
T ss_dssp SSEEEEEECCHHHHHTTTHHHHHTTTCCHHHHE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHcCCChhhcE
Confidence 356799999999 575 6899999999988754
No 62
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=96.61 E-value=0.0025 Score=53.77 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=35.6
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCC----CCCCC-Ccc--cCCcEEEE
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTGMEL----PYSCR-AGA--CSTCAGQM 104 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i----~~~C~-~G~--CGtC~v~v 104 (149)
+|+|. .|| +.+++.+|+||++|+.++|+++ +.. + .|. |+.|.|.|
T Consensus 15 ~v~~~-~dg--~~~~~~~g~ti~~a~~~~g~~~~~~~~~~-~p~g~~~~~~c~v~v 66 (493)
T 1y56_A 15 KVTIY-FEG--KELEAYEGEKLPVALLANEIYWLTTSNEG-RKRGAFTFGPVPMTV 66 (493)
T ss_dssp EEEEE-ETT--EEEEEETTCBHHHHHHHTTCCCCEECTTS-CEECSSSSSCCEEBS
T ss_pred eEEEE-ECC--EEEEecCCCHHHHHHHHCCCceecCCCCC-CCCccccceEEEEEE
Confidence 57773 689 8899999999999999999975 222 3 455 78899876
No 63
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=96.07 E-value=0.0054 Score=58.18 Aligned_cols=49 Identities=16% Similarity=0.417 Sum_probs=40.3
Q ss_pred EEEEEcCCCCeEEE-EcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEe
Q 031979 56 KVKLIGPNGEENEF-DAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMV 105 (149)
Q Consensus 56 ~V~~~~~~G~~~~~-~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~ 105 (149)
.|+|. .||+.+++ .++++++||+.|++. |+ ....+|+.|.||.|-|.|-
T Consensus 5 ~i~~~-vNg~~~~~~~~~p~~~ll~~LR~~~~ltgtk~gC~~g~CGaCtV~~~ 56 (1332)
T 3unc_A 5 ELVFF-VNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLS 56 (1332)
T ss_dssp CEEEE-ETTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEE
T ss_pred cEEEE-ECCEEEEeecCCCCCCHHHHHhhhcCCCCcCCCcCCCCCCCcEEEEe
Confidence 47773 78955554 588999999999984 77 4999999999999999873
No 64
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=95.24 E-value=0.0066 Score=53.81 Aligned_cols=23 Identities=4% Similarity=0.001 Sum_probs=19.8
Q ss_pred CCCeEEEcCCchH-HHHHHHHHHc
Q 031979 18 SKKFSLVKSPASL-GSTRSVSKAF 40 (149)
Q Consensus 18 ~~~~~y~CGP~~m-~~v~~~~~~~ 40 (149)
.+.+||+|||.+| ++|++.|.+.
T Consensus 601 ~~~~vYvCGp~~M~~~V~~~L~~i 624 (688)
T 1tll_A 601 QGGHIYVCGDVTMAADVLKAIQRI 624 (688)
T ss_dssp SCCEEEEEEEHHHHHHHHHHHHHH
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHH
Confidence 5789999999995 9999988775
No 65
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=94.78 E-value=0.032 Score=52.95 Aligned_cols=49 Identities=16% Similarity=0.400 Sum_probs=38.5
Q ss_pred EEEEEcCCCCeEEE-EcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEe
Q 031979 56 KVKLIGPNGEENEF-DAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMV 105 (149)
Q Consensus 56 ~V~~~~~~G~~~~~-~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~ 105 (149)
+++|. .||+..++ .+++..|||+.|+.+ ++ .-..+|+.|-||.|-|-|-
T Consensus 9 ~l~F~-vNG~~v~~~~~~p~~tLl~~LR~~~~ltGTK~gC~EG~CGACtV~v~ 60 (1335)
T 3zyv_A 9 ELIFF-VNGKKVTERNADPEVNLLFYLRKVIRLTGTKYGCGGGDCGACTVMIS 60 (1335)
T ss_dssp CEEEE-ETTEEEEESSCCTTCBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEEE
T ss_pred eEEEE-ECCEEEEeCCCCcCccHHHHHhccCCCcccccccCCCCCcceEEEEe
Confidence 57774 78843333 256899999999984 76 4889999999999999774
No 66
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=94.60 E-value=0.011 Score=46.37 Aligned_cols=30 Identities=13% Similarity=0.227 Sum_probs=21.3
Q ss_pred CCCCeEEEcCCchH-HHHHHHH----HHcCCCCCc
Q 031979 17 RSKKFSLVKSPASL-GSTRSVS----KAFGLKCSS 46 (149)
Q Consensus 17 ~~~~~~y~CGP~~m-~~v~~~~----~~~g~~~~~ 46 (149)
..+.+||+|||.+| ++|++++ .+.|++.++
T Consensus 254 ~~~~~vyvCGp~~m~~~v~~~l~~~~~~~g~~~~~ 288 (304)
T 2bmw_A 254 NQKTHTYICGPPPMEEGIDAALSAAAAKEGVTWSD 288 (304)
T ss_dssp STTEEEEEEECTTHHHHHHHHHHHHHHTTTCCHHH
T ss_pred cCCcEEEEECCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 45678999999984 8777665 455766443
No 67
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=94.34 E-value=0.073 Score=48.67 Aligned_cols=49 Identities=8% Similarity=0.015 Sum_probs=40.5
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCC-----------CCcccCCcEEEEe
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSC-----------RAGACSTCAGQMV 105 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C-----------~~G~CGtC~v~v~ 105 (149)
+..|+|. .+| +++++.+|+||+.||+++|+.+...| ..|.|..|.+.+-
T Consensus 20 ~~~~~~~-~dG--~~~~~~~g~tv~~aL~~~Gv~~~~~s~~~~~prg~~~~~~~c~~~~v~v~ 79 (965)
T 2gag_A 20 EEALSLT-VDG--AKLSAFRGDTVASALLANGVRRAGNSLYLDRPRGIFAAGVEEPNALVTVS 79 (965)
T ss_dssp EEEEEEE-ETT--EEEEEEETCBHHHHHHHTTCCBCSCCTTTCCCCBCCCSSTTCCSCEEEEC
T ss_pred CCeEEEE-ECC--EEEEecCCCHHHHHHHHcCCeEeecCCCCCCCcccccCCccCCceEEEEc
Confidence 3467773 789 89999999999999999999865544 4588999999987
No 68
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=94.28 E-value=0.012 Score=48.69 Aligned_cols=27 Identities=7% Similarity=-0.144 Sum_probs=22.5
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHcCCCC
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAFGLKC 44 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~ 44 (149)
.+.+||+|||.+ |++++++|.+.|...
T Consensus 353 ~~~~vyvCGP~~M~~~v~~~L~~~g~~~ 380 (402)
T 2b5o_A 353 PNTHVYMCGLKGMQPPIDETFTAEAEKR 380 (402)
T ss_dssp TTEEEEEEECGGGHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHHHHc
Confidence 578999999999 599999998876653
No 69
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=93.90 E-value=0.02 Score=45.25 Aligned_cols=23 Identities=0% Similarity=0.026 Sum_probs=19.2
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHc
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAF 40 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~ 40 (149)
.+.++|+|||.+ |+++++.|.+.
T Consensus 265 ~~~~vyvCGp~~m~~~v~~~L~~~ 288 (314)
T 1fnb_A 265 DNTYVYMCGLKGMEKGIDDIMVSL 288 (314)
T ss_dssp TTEEEEEEECTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHHH
Confidence 578899999999 59888877665
No 70
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=93.78 E-value=0.023 Score=47.52 Aligned_cols=25 Identities=4% Similarity=-0.063 Sum_probs=20.5
Q ss_pred CCCeEEEcCCchH-HHHHHHHHHcCC
Q 031979 18 SKKFSLVKSPASL-GSTRSVSKAFGL 42 (149)
Q Consensus 18 ~~~~~y~CGP~~m-~~v~~~~~~~g~ 42 (149)
.+.+||+|||.+| ++|++++.+.+.
T Consensus 380 ~~~~vYvCGp~~M~~~V~~~L~~i~~ 405 (435)
T 1f20_A 380 QGGHIYVCGDVTMAADVLKAIQRIMT 405 (435)
T ss_dssp SCCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEeCChhHHHHHHHHHHHHHH
Confidence 5789999999995 899888876544
No 71
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=93.74 E-value=0.02 Score=45.25 Aligned_cols=24 Identities=0% Similarity=0.037 Sum_probs=19.5
Q ss_pred CCCCeEEEcCCch-HHHHHHHHHHc
Q 031979 17 RSKKFSLVKSPAS-LGSTRSVSKAF 40 (149)
Q Consensus 17 ~~~~~~y~CGP~~-m~~v~~~~~~~ 40 (149)
..+.+||+|||.+ |++++++|.+.
T Consensus 260 ~~~~~vyvCGp~~M~~~v~~~L~~~ 284 (310)
T 3vo2_A 260 KDNTYVYMCGLKGMEKGIDDIMLNL 284 (310)
T ss_dssp STTEEEEEEESTTHHHHHHHHHHHH
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHH
Confidence 4578999999999 48888888754
No 72
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=93.73 E-value=0.033 Score=43.86 Aligned_cols=23 Identities=4% Similarity=-0.052 Sum_probs=19.1
Q ss_pred CCCeEEEcCCch-HHHHHHHHHHc
Q 031979 18 SKKFSLVKSPAS-LGSTRSVSKAF 40 (149)
Q Consensus 18 ~~~~~y~CGP~~-m~~v~~~~~~~ 40 (149)
.+..||+|||.+ |++++++|.+.
T Consensus 262 ~~~~vyvCGp~~m~~~v~~~L~~~ 285 (311)
T 3lo8_A 262 GGAHIYFCGLKGMMPGIQDTLKKV 285 (311)
T ss_dssp TTCEEEEEECGGGHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHHH
Confidence 578999999999 58888877664
No 73
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=93.09 E-value=0.043 Score=43.23 Aligned_cols=28 Identities=4% Similarity=-0.160 Sum_probs=22.6
Q ss_pred eEEEc-CCch-HHHHHHHHHHcCCCCCccccc
Q 031979 21 FSLVK-SPAS-LGSTRSVSKAFGLKCSSFKAS 50 (149)
Q Consensus 21 ~~y~C-GP~~-m~~v~~~~~~~g~~~~~f~~~ 50 (149)
.+|+| ||.+ |+++++.|.+.|+ ++++++
T Consensus 268 ~~yvCGGp~~m~~~v~~~L~~~g~--~~i~~e 297 (314)
T 2rc5_A 268 RFYICGGPKGMEKGVIEEIQKISG--NTGTYE 297 (314)
T ss_dssp EEEEEESSTTTHHHHHHHHHHHHT--CCSCHH
T ss_pred eEEEeCCcHHHHHHHHHHHHHHHh--ccchHH
Confidence 45999 9999 5999999999887 455544
No 74
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=92.68 E-value=0.049 Score=45.05 Aligned_cols=23 Identities=4% Similarity=-0.061 Sum_probs=18.4
Q ss_pred CCCeEEEcCCch-H-HHHHHHHHHc
Q 031979 18 SKKFSLVKSPAS-L-GSTRSVSKAF 40 (149)
Q Consensus 18 ~~~~~y~CGP~~-m-~~v~~~~~~~ 40 (149)
.+.+||+|||.+ | ++|+++|.+.
T Consensus 337 ~~~~vYvCGp~~~M~~~V~~~L~~i 361 (393)
T 4dql_A 337 QGAHFYICGDGSQMAPAVEATLMKS 361 (393)
T ss_dssp TTCEEEEEEETTTHHHHHHHHHHHH
T ss_pred CCcEEEEECCchhhHHHHHHHHHHH
Confidence 578999999986 8 6888877653
No 75
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=91.07 E-value=0.12 Score=42.42 Aligned_cols=23 Identities=4% Similarity=-0.045 Sum_probs=18.2
Q ss_pred CCCeEEEcC-CchH-HHHHHHHHHc
Q 031979 18 SKKFSLVKS-PASL-GSTRSVSKAF 40 (149)
Q Consensus 18 ~~~~~y~CG-P~~m-~~v~~~~~~~ 40 (149)
.+.++|+|| |.+| ++|++++.+.
T Consensus 320 ~~~~vYvCG~p~~M~~~V~~~L~~i 344 (374)
T 1ddg_A 320 DGAHIYVCGDANRMAKDVEQALLEV 344 (374)
T ss_dssp TTCEEEEEECTTTHHHHHHHHHHHH
T ss_pred CCcEEEEECCCHHHHHHHHHHHHHH
Confidence 478999999 8886 8888877554
No 76
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=91.03 E-value=0.096 Score=44.31 Aligned_cols=23 Identities=9% Similarity=0.018 Sum_probs=18.0
Q ss_pred CCCeEEEcCCc-hH-HHHHHHHHHc
Q 031979 18 SKKFSLVKSPA-SL-GSTRSVSKAF 40 (149)
Q Consensus 18 ~~~~~y~CGP~-~m-~~v~~~~~~~ 40 (149)
.+.+||+|||+ .| ++|+++|.+.
T Consensus 403 ~~~~vYvCGp~~~M~~~V~~~L~~i 427 (458)
T 3qfs_A 403 GGAHIYVCGDARNMARDVQNTFYDI 427 (458)
T ss_dssp TTCEEEEEEETTTHHHHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHH
Confidence 57899999997 47 8888877543
No 77
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=90.51 E-value=0.14 Score=44.20 Aligned_cols=22 Identities=9% Similarity=0.018 Sum_probs=17.6
Q ss_pred CCCeEEEcCCc-hH-HHHHHHHHH
Q 031979 18 SKKFSLVKSPA-SL-GSTRSVSKA 39 (149)
Q Consensus 18 ~~~~~y~CGP~-~m-~~v~~~~~~ 39 (149)
.+.+||+|||. +| ++|.++|.+
T Consensus 484 ~~a~vYVCGp~~~M~~~V~~~L~~ 507 (539)
T 2qtl_A 484 ENGHIYVCGDAKNMAKDVHDALVQ 507 (539)
T ss_dssp SCCEEEEEESCHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCHHHHHHHHHHHHH
Confidence 46899999998 66 888887754
No 78
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=88.02 E-value=0.27 Score=43.39 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=17.8
Q ss_pred CCCeEEEcCCc-hH-HHHHHHHHHc
Q 031979 18 SKKFSLVKSPA-SL-GSTRSVSKAF 40 (149)
Q Consensus 18 ~~~~~y~CGP~-~m-~~v~~~~~~~ 40 (149)
.+.+||+|||. +| ++|+++|.+.
T Consensus 628 ~~~~vYvCGpa~~M~~~V~~~L~~i 652 (682)
T 2bpo_A 628 NGAFIYVCGDAKGMAKGVSTALVGI 652 (682)
T ss_dssp TTCEEEEEECSTTHHHHHHHHHHHH
T ss_pred CCcEEEEeCCchHhHHHHHHHHHHH
Confidence 57899999995 66 8888877543
No 79
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=87.75 E-value=0.22 Score=43.46 Aligned_cols=23 Identities=9% Similarity=0.018 Sum_probs=17.7
Q ss_pred CCCeEEEcCCc-hH-HHHHHHHHHc
Q 031979 18 SKKFSLVKSPA-SL-GSTRSVSKAF 40 (149)
Q Consensus 18 ~~~~~y~CGP~-~m-~~v~~~~~~~ 40 (149)
.+.++|+|||. .| ++|+++|.+.
T Consensus 563 ~~a~vYvCGp~~~M~~~V~~~L~~i 587 (618)
T 3qe2_A 563 GGAHIYVCGDARNMARDVQNTFYDI 587 (618)
T ss_dssp HTCEEEEEEETTTHHHHHHHHHHHH
T ss_pred CCcEEEEECCchHHHHHHHHHHHHH
Confidence 46799999997 66 8888877543
No 80
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=77.52 E-value=2.7 Score=27.02 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=30.3
Q ss_pred EEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEee
Q 031979 57 VKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVS 106 (149)
Q Consensus 57 V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~ 106 (149)
|.++-|+++...++|.+|+||-+|+.++ +.. |+=.+-.|.|....
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~Ka-Lk~----R~L~pe~C~V~~~~ 48 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKA-LKV----RGLQPECCAVFRLL 48 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHH-HHT----TTCCGGGEEEEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHH-HHH----cCCCHHHeEEEEec
Confidence 3333488876789999999999988765 111 12256678887663
No 81
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=75.63 E-value=2.9 Score=27.42 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=30.7
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEe
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMV 105 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~ 105 (149)
.|.++-|+++...++|.+|+||-+|+.++ +.. |+=.+-.|.|...
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~Ka-Lk~----R~L~pe~C~Vy~~ 53 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKA-LKV----RGLNQDCCVVYRL 53 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHH-HHT----TTCCSSSEEEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHH-HHH----cCCCHHHeEEEEc
Confidence 45555588877789999999999988765 111 1224667777755
No 82
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=75.33 E-value=3.5 Score=27.60 Aligned_cols=50 Identities=20% Similarity=0.189 Sum_probs=33.3
Q ss_pred CceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEee
Q 031979 52 MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVS 106 (149)
Q Consensus 52 ~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~ 106 (149)
|....|.+.-|+++...++|.+|.||-+|+.++ +.. |.=.+-.|.|....
T Consensus 11 ~~~~~irvhLPNqQrT~V~VrpG~tlrdaL~Ka-Lk~----R~L~pe~C~Vy~~~ 60 (96)
T 3ny5_A 11 MQKPIVRVFLPNKQRTVVPARCGVTVRDSLKKA-LMM----RGLIPECCAVYRIQ 60 (96)
T ss_dssp CSSCEEEEEETTTEEEEEECCTTCBHHHHHHHH-HHT----TTCCGGGEEEEECC
T ss_pred hhhCEEEEECCCCceEEEEecCCcCHHHHHHHH-HHH----cCCChHHeEEEEcc
Confidence 444455555588876789999999999988765 111 12256677887653
No 83
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=73.49 E-value=3.5 Score=27.24 Aligned_cols=32 Identities=19% Similarity=0.453 Sum_probs=24.8
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHHHH----cCCC
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSAED----TGME 87 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~----~Gi~ 87 (149)
.|+++.++|...++.+.++.+|.|.+++ .|++
T Consensus 11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~ 46 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFN 46 (90)
T ss_dssp CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCC
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 4666678998889999999998887654 5664
No 84
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=72.43 E-value=4.2 Score=27.16 Aligned_cols=41 Identities=22% Similarity=0.275 Sum_probs=30.1
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHHHHc----CCCCCCCCCCcccCCcEEEEe
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSAEDT----GMELPYSCRAGACSTCAGQMV 105 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~----Gi~i~~~C~~G~CGtC~v~v~ 105 (149)
.|.+.-++++...++|.+|+||-+|+.++ |+ .+-.|.|...
T Consensus 19 ~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L---------~pe~C~Vy~~ 63 (95)
T 2l05_A 19 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGL---------IPECCAVYRI 63 (95)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTC---------CGGGEEEEEE
T ss_pred EEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCC---------CHHHcEEEEc
Confidence 44444488876789999999999988664 44 5666777755
No 85
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=72.17 E-value=23 Score=24.99 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=44.7
Q ss_pred CCceeEEEEEcCCCCeEEEEcCCCchHHHH----HHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCe
Q 031979 51 AMAVYKVKLIGPNGEENEFDAPDDAYIIDS----AEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGF 126 (149)
Q Consensus 51 ~~~~~~V~~~~~~G~~~~~~v~~g~tLLea----~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~ 126 (149)
+....+|++...+|+...+++++..|+.+. ....|+++.. ..-+..|.. ..+...|.+-.+.++.
T Consensus 17 ~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~----------QrL~~~g~~-L~d~~tL~~~~i~~~~ 85 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ----------QRLIFAGKQ-LEDGRTLSDYNIQKES 85 (172)
T ss_dssp --CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGG----------EEEEETTEE-CCTTCBTGGGTCCTTC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHH----------EEEEECCcc-ccccCCHhHcCCcccc
Confidence 344567777557888888999999999873 3445665432 112234432 2233445555555666
Q ss_pred EEeeeeEEcCCeEE
Q 031979 127 VLTCVAYPTSDCVI 140 (149)
Q Consensus 127 ~LaCq~~~~~d~~I 140 (149)
.+-...+..+.+.|
T Consensus 86 ~l~l~~~~~gg~~i 99 (172)
T 3u30_A 86 TLHLVLRLRGGMQI 99 (172)
T ss_dssp EEEEEECCCCCEEE
T ss_pred eeeeeecccccccc
Confidence 65555554444443
No 86
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=67.73 E-value=6.7 Score=26.68 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=30.6
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHHHHc----CCCCCCCCCCcccCCcEEEEe
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSAEDT----GMELPYSCRAGACSTCAGQMV 105 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~----Gi~i~~~C~~G~CGtC~v~v~ 105 (149)
.|.+.-++++...++|.+|.||-||+.++ |+ .+-.|.|...
T Consensus 20 ~ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L---------~pe~C~Vy~~ 64 (107)
T 1rrb_A 20 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGL---------QPECCAVFRL 64 (107)
T ss_dssp EEEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTC---------CTTTEEEEEC
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCC---------CHHHceeEEc
Confidence 45555588877789999999999988665 44 4667888765
No 87
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=66.97 E-value=7.2 Score=26.19 Aligned_cols=33 Identities=30% Similarity=0.407 Sum_probs=24.7
Q ss_pred CceeEEEEEcCCCCeE--EEEcCCCchHHHHHHHcC
Q 031979 52 MAVYKVKLIGPNGEEN--EFDAPDDAYIIDSAEDTG 85 (149)
Q Consensus 52 ~~~~~V~~~~~~G~~~--~~~v~~g~tLLea~~~~G 85 (149)
.+..+|+|...+|... .+. +.+++|+++|+++.
T Consensus 6 ~k~i~i~v~~~~~~~~~~~v~-t~g~tL~dvLk~~~ 40 (101)
T 3u7z_A 6 EKHITVTVIHGDQTENVFEFD-TDAKYLGEVLESEN 40 (101)
T ss_dssp CEEEEEEEECTTSCEEEEEEE-ECCSBHHHHHHHTT
T ss_pred eeEEEEEEEcCCCceeEEEEc-CCccHHHHHHHHcC
Confidence 3467888876666544 455 67899999999998
No 88
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=64.83 E-value=14 Score=22.97 Aligned_cols=38 Identities=18% Similarity=0.181 Sum_probs=28.0
Q ss_pred eEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCC
Q 031979 66 ENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSD 113 (149)
Q Consensus 66 ~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~ 113 (149)
.+.+++++|.|+.+.+++.|++... . +-++.|.+-..+
T Consensus 12 ~~~~ev~~g~Tv~dLL~~Lgl~~~~---------V-vV~vNG~~v~~d 49 (74)
T 2l32_A 12 TSEVAVDDDGTYADLVRAVDLSPHE---------V-TVLVDGRPVPED 49 (74)
T ss_dssp EEEEECSTTCSHHHHHHTTCCCSSC---------C-CEECCCCCCCTT
T ss_pred ceeEEcCCCCcHHHHHHHcCCCcce---------E-EEEECCEECCHH
Confidence 3568999999999999999998753 1 235677655443
No 89
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=61.65 E-value=7.5 Score=24.66 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=24.3
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCC
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELP 89 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~ 89 (149)
+|.+..++| ..++.+.|.|.+|.|.+-+-.+.
T Consensus 7 ~i~v~tP~G--~~~~lp~GaT~~D~A~~Ih~~lg 38 (78)
T 3hvz_A 7 EVFVFTPKG--DVISLPIGSTVIDFAYAIHSAVG 38 (78)
T ss_dssp EEEEECTTS--CEEEEETTCBHHHHHHHHCHHHH
T ss_pred eEEEECCCC--CEEEecCCCCHHHHHHHhhhhhh
Confidence 466657899 67888999999999987654443
No 90
>3kdv_A DDRB, DNA damage response B protein; anti-parallel beta-barrel, pentamer, DNA binding protein; HET: DNA; 2.80A {Deinococcus geothermalis} PDB: 4exw_A
Probab=58.04 E-value=12 Score=27.28 Aligned_cols=34 Identities=15% Similarity=0.322 Sum_probs=29.5
Q ss_pred CceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcC
Q 031979 52 MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTG 85 (149)
Q Consensus 52 ~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~G 85 (149)
+.|..|.|.++-|...+++++.++.||+.++.-|
T Consensus 5 ~tml~i~f~t~LG~~V~vdve~~~~~l~v~R~yG 38 (184)
T 3kdv_A 5 FTMLHIEFITDLGAKVTVDVESADKLLDVQRQYG 38 (184)
T ss_dssp SCCEEEEEECTTCCEEEEEESSGGGHHHHHHHHH
T ss_pred cceEEEEEecCCCceEEEecCCHHHHHHHHHHhh
Confidence 4577899988889888999999999999998854
No 91
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=57.70 E-value=4.1 Score=26.60 Aligned_cols=26 Identities=23% Similarity=0.703 Sum_probs=19.8
Q ss_pred hHHHHHHHcCCC--C---CCCCCCcccCCcE
Q 031979 76 YIIDSAEDTGME--L---PYSCRAGACSTCA 101 (149)
Q Consensus 76 tLLea~~~~Gi~--i---~~~C~~G~CGtC~ 101 (149)
..|+.+++.|.- + +.+|..|.|++|.
T Consensus 35 rDL~~Le~~G~l~R~~~~~~~C~sgsC~sC~ 65 (87)
T 2k02_A 35 AMLERMEAMGKVVRISETSEGCLSGSCKSCP 65 (87)
T ss_dssp HHHHHHHTTCCSEEEEEECCSSCSSSSSSCS
T ss_pred HHHHHHHHCCCEEEEecCCCCCCCCCCCCCC
Confidence 457888888863 3 4789888999994
No 92
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=53.66 E-value=15 Score=22.00 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=21.1
Q ss_pred EEEcCCCCeEEEEcCCCchHHHHHHHcCCCC
Q 031979 58 KLIGPNGEENEFDAPDDAYIIDSAEDTGMEL 88 (149)
Q Consensus 58 ~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i 88 (149)
++..++| ..++++.|.|+++.+.+.+..+
T Consensus 4 ~i~~p~g--~~~~~~~g~T~~dla~~i~~~l 32 (73)
T 2kmm_A 4 MVFTPKG--EIKRLPQGATALDFAYSLHSDL 32 (73)
T ss_dssp EEECTTC--CEEEECTTCBHHHHHHHHCSHH
T ss_pred EEEcCCC--CEEEcCCCCcHHHHHHHHhhcc
Confidence 3333678 5678889999999998875443
No 93
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=52.81 E-value=7.7 Score=24.56 Aligned_cols=26 Identities=27% Similarity=0.732 Sum_probs=19.2
Q ss_pred hHHHHHHHcCCC-----CCCCCCCcccCCcE
Q 031979 76 YIIDSAEDTGME-----LPYSCRAGACSTCA 101 (149)
Q Consensus 76 tLLea~~~~Gi~-----i~~~C~~G~CGtC~ 101 (149)
.-|+.+++.|.- -...|..|.|++|.
T Consensus 35 rdL~~Le~~G~l~R~~~~GgaC~~g~C~~C~ 65 (78)
T 1xn7_A 35 AMLQQLESMGKAVRIQEEPDGCLSGSCKSCP 65 (78)
T ss_dssp HHHHHHHHHTSEEEECCCCCCCCCSSCCCCC
T ss_pred HHHHHHHHCCCEEEecCcCCCCCCCCCCCCC
Confidence 457778888863 24678888899994
No 94
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=52.54 E-value=16 Score=24.22 Aligned_cols=38 Identities=21% Similarity=0.162 Sum_probs=28.6
Q ss_pred CceeEEEEEcCCCCeEEEEcCCCchHHHH----HHHcCCCCC
Q 031979 52 MAVYKVKLIGPNGEENEFDAPDDAYIIDS----AEDTGMELP 89 (149)
Q Consensus 52 ~~~~~V~~~~~~G~~~~~~v~~g~tLLea----~~~~Gi~i~ 89 (149)
+.+.+|++....|++.++++++..|+.+. +.+.|+++.
T Consensus 26 ~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~ 67 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWN 67 (100)
T ss_dssp CCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGG
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHH
Confidence 45688888767788889999999998764 344577644
No 95
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=52.38 E-value=17 Score=23.94 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=28.1
Q ss_pred CceeEEEEEcCCCCeEEEEcCCCchHHHH----HHHcCCCC
Q 031979 52 MAVYKVKLIGPNGEENEFDAPDDAYIIDS----AEDTGMEL 88 (149)
Q Consensus 52 ~~~~~V~~~~~~G~~~~~~v~~g~tLLea----~~~~Gi~i 88 (149)
..+.+|.+..+.|++.++++.+..||.+. +++.|+++
T Consensus 19 ~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~ 59 (93)
T 3plu_A 19 SHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQP 59 (93)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCG
T ss_pred CceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCH
Confidence 34778888778899899999999999864 34566665
No 96
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=49.94 E-value=41 Score=22.30 Aligned_cols=76 Identities=13% Similarity=0.142 Sum_probs=45.4
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHHH----HHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEe
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDSA----EDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLT 129 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~----~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~La 129 (149)
.|+|.+...+|+...+++++..|+.+.- ...|+++... .-+..|..- .+...|.+-.+.++..|-
T Consensus 9 ~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q----------rLi~~Gk~L-~D~~tL~~ygI~~gstI~ 77 (114)
T 2kdi_A 9 EFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ----------RLIWAGKQL-EDGRTLSDYNIQRESTLH 77 (114)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGE----------EEEETTEEC-CTTCBTTTTTCCSSCEEE
T ss_pred cEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHE----------EEEECCEEC-CCCCcHHHCCCCCCCEEE
Confidence 5777776678888899999999987643 3346653321 112234321 233456555566677776
Q ss_pred eeeEEcCCeEE
Q 031979 130 CVAYPTSDCVI 140 (149)
Q Consensus 130 Cq~~~~~d~~I 140 (149)
...+..+...+
T Consensus 78 l~~~~~GG~~~ 88 (114)
T 2kdi_A 78 LVLRLRGGSMG 88 (114)
T ss_dssp EEECCCSSCCC
T ss_pred EEEEcCCCcee
Confidence 66666655443
No 97
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=49.80 E-value=24 Score=23.53 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=22.8
Q ss_pred ceeEEEEEcCCCCeEEEEcCCCchHHHH
Q 031979 53 AVYKVKLIGPNGEENEFDAPDDAYIIDS 80 (149)
Q Consensus 53 ~~~~V~~~~~~G~~~~~~v~~g~tLLea 80 (149)
...+|+|...+|+..++++++..|+.+.
T Consensus 6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dL 33 (105)
T 1v2y_A 6 SGMTVRVCKMDGEVMPVVVVQNATVLDL 33 (105)
T ss_dssp CSEEEEEECSSSCEEEEEECTTCBHHHH
T ss_pred CcEEEEEEecCCCEEEEEECCCChHHHH
Confidence 3567888777898899999999998753
No 98
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=47.45 E-value=9.9 Score=20.72 Aligned_cols=22 Identities=9% Similarity=0.216 Sum_probs=18.7
Q ss_pred EEEEcCCCchHHHHHHHcCCCC
Q 031979 67 NEFDAPDDAYIIDSAEDTGMEL 88 (149)
Q Consensus 67 ~~~~v~~g~tLLea~~~~Gi~i 88 (149)
....|.+|+||-..+.+.|+.+
T Consensus 3 ~~y~V~~GDtl~~Ia~~~~~~~ 24 (48)
T 1e0g_A 3 ITYRVRKGDSLSSIAKRHGVNI 24 (48)
T ss_dssp CEEEECTTCCHHHHHHHHTCCH
T ss_pred EEEEEcCCCcHHHHHHHHCcCH
Confidence 4567899999999999998874
No 99
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=46.65 E-value=26 Score=21.08 Aligned_cols=69 Identities=17% Similarity=0.206 Sum_probs=39.7
Q ss_pred ceeEEEEEcCCCCeEEEEcCCCchHHHHH----HHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEE
Q 031979 53 AVYKVKLIGPNGEENEFDAPDDAYIIDSA----EDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVL 128 (149)
Q Consensus 53 ~~~~V~~~~~~G~~~~~~v~~g~tLLea~----~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~L 128 (149)
...+|++...+|+...+++.+..|+.+.- .+.|+++.. ...+..|..- .+...|.+-...++..+
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~----------qrL~~~G~~L-~d~~tl~~~~i~~~~~i 70 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNS----------LRFLFEGQRI-ADNHTPKELGMEEEDVI 70 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGG----------EEEEETTEEC-CTTCCHHHHTCCTTEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCccc----------EEEEECCEEe-CCCCCHHHcCCCCCCEE
Confidence 45678886678888889999998877643 345665421 1223455432 23333444445566655
Q ss_pred eeee
Q 031979 129 TCVA 132 (149)
Q Consensus 129 aCq~ 132 (149)
-...
T Consensus 71 ~l~~ 74 (79)
T 2uyz_B 71 EVYQ 74 (79)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 100
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=44.90 E-value=33 Score=22.83 Aligned_cols=35 Identities=14% Similarity=0.027 Sum_probs=28.8
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCC
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMEL 88 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i 88 (149)
...|+|...||..+++.|.+++|-.++++..-...
T Consensus 9 k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~ 43 (100)
T 1wgr_A 9 PHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRA 43 (100)
T ss_dssp CEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSS
T ss_pred CEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHc
Confidence 45677777899999999999999999998765544
No 101
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=44.18 E-value=16 Score=22.98 Aligned_cols=24 Identities=8% Similarity=0.101 Sum_probs=20.8
Q ss_pred CCCCeEEEEcC--CCchHHHHHHHcCCC
Q 031979 62 PNGEENEFDAP--DDAYIIDSAEDTGME 87 (149)
Q Consensus 62 ~~G~~~~~~v~--~g~tLLea~~~~Gi~ 87 (149)
.+| +.++++ ++.||.+.+.+.|++
T Consensus 5 vNG--e~~e~~~~~~~Tl~~LL~~l~~~ 30 (78)
T 2k5p_A 5 VNG--KPSTVDGAESLNVTELLSALKVA 30 (78)
T ss_dssp ETT--EEEECSSCSCEEHHHHHHHHTCS
T ss_pred ECC--EEEEcCCCCCCcHHHHHHHcCCC
Confidence 467 678888 899999999999987
No 102
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}
Probab=44.11 E-value=37 Score=28.74 Aligned_cols=38 Identities=13% Similarity=0.111 Sum_probs=28.0
Q ss_pred EEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCC
Q 031979 67 NEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112 (149)
Q Consensus 67 ~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~ 112 (149)
.+++++++.|+|++|.+-. ..+||. +|.++ +.|.....
T Consensus 45 y~v~~~~~~~vLd~L~~ik---~l~fr~----sCam~-ING~~~la 82 (514)
T 3kwl_A 45 YFLEYQEDQYLLDLLKQLK---GVSYSE----NIALK-INQIAVFE 82 (514)
T ss_dssp EEEECCTTCBHHHHHTTST---TCCCCS----SCCEE-ETTEEECS
T ss_pred EEEeCCCCCcHHHHHHHhh---hCeeec----cceEE-ECCEehhh
Confidence 4577789999999997755 666777 77775 47766544
No 103
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=43.05 E-value=37 Score=20.34 Aligned_cols=35 Identities=6% Similarity=0.089 Sum_probs=25.4
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHHH----HHcCCCC
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDSA----EDTGMEL 88 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~----~~~Gi~i 88 (149)
..+|.+...+|+...+++++..|+.+.= ...|+++
T Consensus 4 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 42 (79)
T 3phx_B 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD 42 (79)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCG
T ss_pred CEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCH
Confidence 4567776678888889999999987643 2356654
No 104
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=40.64 E-value=52 Score=19.73 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=41.1
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHHH----HHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEe
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDSA----EDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLT 129 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~----~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~La 129 (149)
+.+|++...+|+...+++++..|+.+.- .+.|+++... .-+..|..- .+...|.+-.+.++..+-
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q----------rL~~~g~~L-~d~~tL~~~~i~~~~~l~ 71 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ----------RLIFAGKQL-EDGRTLSDYNIQKWSTLF 71 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGC----------EEEETTEEC-CTTSBTGGGTCCTTCEEE
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHE----------EEEECCEEC-CCCCCHHHcCCCCCCEEE
Confidence 4567776668888899999999987643 3456654321 112344322 233445554555666665
Q ss_pred eeeEEc
Q 031979 130 CVAYPT 135 (149)
Q Consensus 130 Cq~~~~ 135 (149)
...+..
T Consensus 72 l~~r~~ 77 (85)
T 3mtn_B 72 LLLRLR 77 (85)
T ss_dssp EECCCC
T ss_pred EEEECc
Confidence 554443
No 105
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=37.28 E-value=22 Score=22.93 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.6
Q ss_pred CCCCeEEEEcCCC-chHHHHHHHcCCC
Q 031979 62 PNGEENEFDAPDD-AYIIDSAEDTGME 87 (149)
Q Consensus 62 ~~G~~~~~~v~~g-~tLLea~~~~Gi~ 87 (149)
.|| +.++++++ .||.+.+++.+++
T Consensus 25 vNG--e~~el~~~~~Tv~dLL~~L~~~ 49 (87)
T 1tyg_B 25 LNG--KDVKWKKDTGTIQDLLASYQLE 49 (87)
T ss_dssp ETT--EEECCSSSCCBHHHHHHHTTCT
T ss_pred ECC--EEEECCCCCCcHHHHHHHhCCC
Confidence 478 78888898 9999999999875
No 106
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=37.07 E-value=69 Score=19.35 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=27.1
Q ss_pred CceeEEEEEcCCCCeEEEEcCCCchHHHHH----HHcCCCCC
Q 031979 52 MAVYKVKLIGPNGEENEFDAPDDAYIIDSA----EDTGMELP 89 (149)
Q Consensus 52 ~~~~~V~~~~~~G~~~~~~v~~g~tLLea~----~~~Gi~i~ 89 (149)
....+|++...+|+...+++.+..|+.+.- ...|+++.
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~ 51 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQ 51 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHH
Confidence 345678886568888899999999987643 34566643
No 107
>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}
Probab=36.68 E-value=94 Score=20.80 Aligned_cols=26 Identities=8% Similarity=0.065 Sum_probs=20.2
Q ss_pred EcCCc--h----HHHHHHHHHHcCCCCCcccc
Q 031979 24 VKSPA--S----LGSTRSVSKAFGLKCSSFKA 49 (149)
Q Consensus 24 ~CGP~--~----m~~v~~~~~~~g~~~~~f~~ 49 (149)
+|||. . +.+.-+.|++.|+.-+||..
T Consensus 20 vCG~~vd~eL~~~~~~~~~lk~~Gi~V~RyNL 51 (106)
T 3ktb_A 20 LCGTNINPELMRIAVVIESLKKQGIIVTRHNL 51 (106)
T ss_dssp CSSSCCCHHHHHHHHHHHHHHHTTCCCEEEET
T ss_pred CcCCCCCHHHHHHHHHHHHHHHCCCEEEEEcc
Confidence 69998 2 36777888889999888753
No 108
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=35.80 E-value=24 Score=21.74 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=20.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHcCCCC
Q 031979 62 PNGEENEFDAPDDAYIIDSAEDTGMEL 88 (149)
Q Consensus 62 ~~G~~~~~~v~~g~tLLea~~~~Gi~i 88 (149)
.+| +.+++ ++.||.+.+++.|++.
T Consensus 5 vNG--~~~e~-~~~Tl~~LL~~l~~~~ 28 (73)
T 2kl0_A 5 ING--EQREV-QSASVAALMTELDCTG 28 (73)
T ss_dssp ETT--EEECC-CCSBHHHHHHHTTCCS
T ss_pred ECC--EEEEc-CCCcHHHHHHHcCCCC
Confidence 467 67778 8899999999999874
No 109
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=34.96 E-value=49 Score=22.61 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=23.3
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHHHH
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDSAE 82 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~ 82 (149)
...|+|...+|++.++++++..|+.+.=+
T Consensus 17 ~m~I~vktl~G~~~~lev~~s~TV~~lK~ 45 (125)
T 2gow_A 17 MINLRLILVSGKTKEFLFSPNDSASDIAK 45 (125)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHH
T ss_pred eEEEEEEeCCCCEEEEEeCCccHHHHHHH
Confidence 57788866788889999999999876543
No 110
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=34.94 E-value=58 Score=21.98 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHHH
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDSA 81 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~ 81 (149)
...|+|...+|.+.++++++..|+.+.=
T Consensus 16 ~m~I~vKtl~G~t~~lev~~s~TV~~lK 43 (116)
T 1wgh_A 16 MINLRLILVSGKTKEFLFSPNDSASDIA 43 (116)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHHH
T ss_pred eEEEEEEeCCCCEEEEEECCcCHHHHHH
Confidence 5678886668888999999999987643
No 111
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=34.85 E-value=31 Score=21.53 Aligned_cols=33 Identities=27% Similarity=0.291 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCeEEEEcCC-CchHHHHHHHcCCCCCC
Q 031979 54 VYKVKLIGPNGEENEFDAPD-DAYIIDSAEDTGMELPY 90 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~-g~tLLea~~~~Gi~i~~ 90 (149)
+.+|++ ++|. ..+.+. |.|+++.+.+.+-.+..
T Consensus 11 ~i~I~l--pdG~--~~~~~~~~~T~~dia~~i~~~l~~ 44 (88)
T 1wwt_A 11 PIKVTL--PDGK--QVDAESWKTTPYQIACGISQGLAD 44 (88)
T ss_dssp EEEEEC--TTSC--EEEEETTTCCHHHHHHHSSTTTGG
T ss_pred CEEEEE--CCCC--EEEcccCCCCHHHHHHHhhhcccc
Confidence 445554 6884 455566 89999999887555443
No 112
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=34.84 E-value=63 Score=19.59 Aligned_cols=72 Identities=14% Similarity=0.137 Sum_probs=40.2
Q ss_pred ceeEEEEEcCCCCeEEEEcCCCchHHHHH----HHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEE
Q 031979 53 AVYKVKLIGPNGEENEFDAPDDAYIIDSA----EDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVL 128 (149)
Q Consensus 53 ~~~~V~~~~~~G~~~~~~v~~g~tLLea~----~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~L 128 (149)
...+|++...+|+...+++++..|+.+.- +..|+++... .-+..|.. ..+...|.+-.+.++..+
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q----------rL~~~Gk~-L~d~~tL~~~~i~~g~~i 74 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQ----------QLEFQGQV-LQDWLGLGIYGIQDSDTL 74 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTE----------EEEETTEE-CCSSSBHHHHTCCTTEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHE----------EEEECCEE-ccCCCCHHHCCCCCCCEE
Confidence 34667775567877789999999987643 3356553221 11234432 223334554445566666
Q ss_pred eeeeEEc
Q 031979 129 TCVAYPT 135 (149)
Q Consensus 129 aCq~~~~ 135 (149)
-...+..
T Consensus 75 ~l~~~~~ 81 (87)
T 1wh3_A 75 ILSKKKG 81 (87)
T ss_dssp EEEECSC
T ss_pred EEEEecc
Confidence 5555443
No 113
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=34.08 E-value=36 Score=21.00 Aligned_cols=34 Identities=24% Similarity=0.099 Sum_probs=26.3
Q ss_pred CCCCeEEEcCCch-----HHHHHHHHHHcC---CCCCccccc
Q 031979 17 RSKKFSLVKSPAS-----LGSTRSVSKAFG---LKCSSFKAS 50 (149)
Q Consensus 17 ~~~~~~y~CGP~~-----m~~v~~~~~~~g---~~~~~f~~~ 50 (149)
..+.+||...|.+ +..|...|...+ +..++|.|.
T Consensus 23 ~gk~DvyY~sP~Gkk~RSk~ev~~yL~~~~~~~l~~~~FdF~ 64 (69)
T 3vxv_A 23 AGKFDVYFISPQGLKFRSKRSLANYLLKNGETFLKPEDFNFT 64 (69)
T ss_dssp TTCEEEEEECTTSCEECSHHHHHHHHHHHCCCCCCGGGSCCC
T ss_pred CCcceEEEEcCCCCEeeCHHHHHHHHHhCCCCCCCHHHccee
Confidence 3467999999996 478999998864 677778765
No 114
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1
Probab=33.89 E-value=97 Score=23.90 Aligned_cols=55 Identities=25% Similarity=0.370 Sum_probs=35.8
Q ss_pred CCCeEEEcCCchHHHHHHHHHHcCCCCCcccccCCceeEEEEEcCCCCeEEEEcCCC-----chHHHHHHHc
Q 031979 18 SKKFSLVKSPASLGSTRSVSKAFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDD-----AYIIDSAEDT 84 (149)
Q Consensus 18 ~~~~~y~CGP~~m~~v~~~~~~~g~~~~~f~~~~~~~~~V~~~~~~G~~~~~~v~~g-----~tLLea~~~~ 84 (149)
.+.-.++|-|..+.+|++.|++.|+... ...++++ ++. .+++.+. +.|+++|+..
T Consensus 170 ~~~~~v~t~p~~~~~V~~aL~~~g~~~~--------~aei~~~-P~~---~v~l~~e~~~~~~klid~Led~ 229 (249)
T 1kon_A 170 DGAIDVYTAWEEMGKVRDALEAAGLKAD--------SAEVSMI-PST---KADMDAETAPKLMRLIDMLEDC 229 (249)
T ss_dssp TSCEEEEEEGGGHHHHHHHHHHTTCCCS--------EEEEEEE-ESS---CCCCCTTTSHHHHHHHHHHHHS
T ss_pred CceEEEEECHHHHHHHHHHHHHcCCCee--------eeeeEEC-CCC---ceecCHHHHHHHHHHHHHHhcc
Confidence 4455678999999999999999988622 3456664 443 2333322 2577777765
No 115
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=33.55 E-value=56 Score=19.70 Aligned_cols=27 Identities=7% Similarity=-0.025 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHH
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDS 80 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea 80 (149)
+.+|++...+|+...+++++..|+.+.
T Consensus 5 ~m~i~vk~~~g~~~~~~v~~~~TV~~l 31 (85)
T 2wyq_A 5 AVTITLKTLQQQTFKIRMEPDETVKVL 31 (85)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHH
T ss_pred eEEEEEEECCCCEEEEEECCCCCHHHH
Confidence 356777556787788999999998764
No 116
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=33.35 E-value=72 Score=18.45 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=22.9
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHH----HHcCCCC
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSA----EDTGMEL 88 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~----~~~Gi~i 88 (149)
+|++...+|+...+++++..|+.+.- ...|+++
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~ 38 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP 38 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcCh
Confidence 46665567877889999999987643 3346653
No 117
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.27 E-value=77 Score=18.74 Aligned_cols=36 Identities=14% Similarity=0.293 Sum_probs=24.6
Q ss_pred ceeEEEEEcCCCCeEEEEcCCCchHHHHH----HHcCCCC
Q 031979 53 AVYKVKLIGPNGEENEFDAPDDAYIIDSA----EDTGMEL 88 (149)
Q Consensus 53 ~~~~V~~~~~~G~~~~~~v~~g~tLLea~----~~~Gi~i 88 (149)
...+|++...+|+...+++++..|+.+.- ...|+++
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~ 45 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPV 45 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCT
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCH
Confidence 34567775467877889999999987643 3456553
No 118
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=32.94 E-value=17 Score=24.39 Aligned_cols=26 Identities=8% Similarity=0.172 Sum_probs=20.9
Q ss_pred CCCeEEEcCCch--H-HHHHHHHHHcCCC
Q 031979 18 SKKFSLVKSPAS--L-GSTRSVSKAFGLK 43 (149)
Q Consensus 18 ~~~~~y~CGP~~--m-~~v~~~~~~~g~~ 43 (149)
.+.++++.||+- | +.+++.+...|+|
T Consensus 52 ~~~DvvLLgPQV~y~~~~ik~~~~~~~ip 80 (108)
T 3nbm_A 52 GVYDLIILAPQVRSYYREMKVDAERLGIQ 80 (108)
T ss_dssp GGCSEEEECGGGGGGHHHHHHHHTTTTCE
T ss_pred cCCCEEEEChHHHHHHHHHHHHhhhcCCc
Confidence 458999999994 4 8899988766665
No 119
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=32.82 E-value=54 Score=19.68 Aligned_cols=70 Identities=13% Similarity=0.129 Sum_probs=39.8
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHHH----HHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEe
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDSA----EDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLT 129 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~----~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~La 129 (149)
..+|++...+|+...+++++..|+.+.- .+.|+++... .-+..|.. ..+...|.+-.+.++..+-
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~q----------rL~~~g~~-L~d~~tL~~~~i~~~~~i~ 71 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQ----------RLIFAGKQ-LEDGRTLSDYNIHNHSALY 71 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGE----------EEEETBEE-CCTTCBTTTTTCCTTCEEE
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHE----------EEEECCeE-CCCCCCHHHCCCCCCCEEE
Confidence 3567776567878889999999987653 3456655321 12234433 2233455555555666655
Q ss_pred eeeEE
Q 031979 130 CVAYP 134 (149)
Q Consensus 130 Cq~~~ 134 (149)
...+.
T Consensus 72 l~~rl 76 (85)
T 3n3k_B 72 LLLKL 76 (85)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 54443
No 120
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=32.59 E-value=71 Score=19.74 Aligned_cols=38 Identities=8% Similarity=0.105 Sum_probs=27.3
Q ss_pred ceeEEEEEcCCCCeEEEEcCCCchHHHHH----HHcCCCCCC
Q 031979 53 AVYKVKLIGPNGEENEFDAPDDAYIIDSA----EDTGMELPY 90 (149)
Q Consensus 53 ~~~~V~~~~~~G~~~~~~v~~g~tLLea~----~~~Gi~i~~ 90 (149)
...+|++...+|+...+++.+..|+.+.= ...|+++..
T Consensus 16 ~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 57 (91)
T 3v6c_B 16 GSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQ 57 (91)
T ss_dssp CSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGG
T ss_pred CeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhh
Confidence 35678876678888889999999988643 345776543
No 121
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=31.67 E-value=22 Score=21.17 Aligned_cols=24 Identities=8% Similarity=0.069 Sum_probs=20.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHcCCC
Q 031979 62 PNGEENEFDAPDDAYIIDSAEDTGME 87 (149)
Q Consensus 62 ~~G~~~~~~v~~g~tLLea~~~~Gi~ 87 (149)
.+| +.++++++.|+.+.+.+.+++
T Consensus 5 vNg--~~~~~~~~~tv~~ll~~l~~~ 28 (66)
T 1f0z_A 5 FND--QAMQCAAGQTVHELLEQLDQR 28 (66)
T ss_dssp ESS--CEECCCTTCCHHHHHHHHTCC
T ss_pred ECC--EEEEcCCCCcHHHHHHHcCCC
Confidence 467 678889999999999998875
No 122
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=31.66 E-value=69 Score=19.65 Aligned_cols=35 Identities=6% Similarity=0.038 Sum_probs=24.9
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHHH----HHcCCCC
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDSA----EDTGMEL 88 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~----~~~Gi~i 88 (149)
..+|++...+|+...+++.+..|+.+.- ++.|+++
T Consensus 5 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 43 (90)
T 4dwf_A 5 SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPS 43 (90)
T ss_dssp EEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCG
T ss_pred EEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCH
Confidence 4567776568888889999999987653 2346654
No 123
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.62 E-value=23 Score=21.59 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=19.2
Q ss_pred EEEEcCCCchHHHHHHHcCCCC
Q 031979 67 NEFDAPDDAYIIDSAEDTGMEL 88 (149)
Q Consensus 67 ~~~~v~~g~tLLea~~~~Gi~i 88 (149)
....|.+|+||...+++.|+.+
T Consensus 16 ~~y~V~~GDTL~~IA~~~~~~~ 37 (77)
T 2djp_A 16 LEHQLEPGDTLAGLALKYGVTM 37 (77)
T ss_dssp EEECCCTTCCHHHHHHHHTCCH
T ss_pred EEEEECCCCcHHHHHHHHCcCH
Confidence 4678899999999999998875
No 124
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=30.55 E-value=60 Score=20.07 Aligned_cols=70 Identities=7% Similarity=-0.017 Sum_probs=39.0
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHHH----HHcCCCCCCCCCCcccCCcEEEE-eeCcccCCCCCCCChhhccCCeEE
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDSA----EDTGMELPYSCRAGACSTCAGQM-VSGSVDQSDGSFLDDKQMEKGFVL 128 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~----~~~Gi~i~~~C~~G~CGtC~v~v-~~G~v~~~~~~~L~~~~~~~g~~L 128 (149)
+.+|.+...+|+...+++++..|+.+.- ...|+++.. .++ ..|.. ..+...|.+-.+.++..+
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~-----------qrL~~~Gk~-L~D~~tL~~~~I~~g~~i 71 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL-----------FWLTFEGKP-LEDQLPLGEYGLKPLSTV 71 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTT-----------EEEESSSSC-CCTTSBHHHHHCSTTCEE
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhH-----------EEEEECCEE-CCCCCcHHHcCCCCCCEE
Confidence 4567775567877889999999987643 334655332 222 34432 223344554455566666
Q ss_pred eeeeEEc
Q 031979 129 TCVAYPT 135 (149)
Q Consensus 129 aCq~~~~ 135 (149)
-...+..
T Consensus 72 ~l~~~~~ 78 (88)
T 2hj8_A 72 FMNLRLR 78 (88)
T ss_dssp EEEEC--
T ss_pred EEEEEcC
Confidence 5554443
No 125
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=30.49 E-value=40 Score=21.43 Aligned_cols=28 Identities=7% Similarity=0.069 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCeEEEEcC--CCchHHHHHH
Q 031979 55 YKVKLIGPNGEENEFDAP--DDAYIIDSAE 82 (149)
Q Consensus 55 ~~V~~~~~~G~~~~~~v~--~g~tLLea~~ 82 (149)
.+|+|...+|++.+++++ +.+|+.+.=+
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~ 31 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQ 31 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHH
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHH
Confidence 466776667866666644 9999987543
No 126
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=30.00 E-value=73 Score=19.83 Aligned_cols=29 Identities=10% Similarity=0.035 Sum_probs=20.1
Q ss_pred CceeEEEEEcCCCC--eEEEEcCCCchHHHH
Q 031979 52 MAVYKVKLIGPNGE--ENEFDAPDDAYIIDS 80 (149)
Q Consensus 52 ~~~~~V~~~~~~G~--~~~~~v~~g~tLLea 80 (149)
+...+|+|...+|. ..++++++..|+.+.
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~l 35 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHL 35 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHH
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHH
Confidence 44567888666665 456677799998764
No 127
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=29.89 E-value=84 Score=18.14 Aligned_cols=68 Identities=15% Similarity=0.193 Sum_probs=36.6
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHH----HHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeee
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSA----EDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCV 131 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~----~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq 131 (149)
+|++...+|+...+++++..|+.+.- +..|+++.. ..-+..|.. ..+...|.+-.+.++..+-..
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~----------q~L~~~g~~-L~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ----------QRLIFAGKQ-LEDGRTLSDYNIQRESTLHLV 70 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGG----------EEEEETTEE-CCTTCBTGGGTCCTTCEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHH----------eEEEECCeE-CCCCCcHHHcCCCCCCEEEEE
Confidence 45554467877889999999987643 334654321 111223432 223344555555566665554
Q ss_pred eEE
Q 031979 132 AYP 134 (149)
Q Consensus 132 ~~~ 134 (149)
.+.
T Consensus 71 ~~~ 73 (76)
T 3a9j_A 71 LRL 73 (76)
T ss_dssp ECC
T ss_pred EeC
Confidence 443
No 128
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=29.41 E-value=61 Score=19.80 Aligned_cols=36 Identities=6% Similarity=0.034 Sum_probs=25.5
Q ss_pred ceeEEEEEcCCCCeEEEEcCCCchHHHHH----HHcCCCC
Q 031979 53 AVYKVKLIGPNGEENEFDAPDDAYIIDSA----EDTGMEL 88 (149)
Q Consensus 53 ~~~~V~~~~~~G~~~~~~v~~g~tLLea~----~~~Gi~i 88 (149)
...+|++...+|+...+++++..|+.+.- .+.|+++
T Consensus 16 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 55 (88)
T 4eew_A 16 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPS 55 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCG
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCH
Confidence 34677776567888889999999988643 3356654
No 129
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=27.34 E-value=50 Score=21.44 Aligned_cols=68 Identities=13% Similarity=0.145 Sum_probs=38.1
Q ss_pred eEEEEEcCCCCeEEEEcCCCchHHHHHH----HcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEee
Q 031979 55 YKVKLIGPNGEENEFDAPDDAYIIDSAE----DTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTC 130 (149)
Q Consensus 55 ~~V~~~~~~G~~~~~~v~~g~tLLea~~----~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaC 130 (149)
.+|+|...+|+...+++++..|+.+.=. ..|+++... .-+..|.. ..+...|.+-.+.+|..+-+
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q----------rLi~~Gk~-L~D~~tL~~~~i~~g~~i~l 70 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQI----------KLIYSGKV-LQDSKTVSECGLKDGDQVVF 70 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGC----------EEEETTEE-CCTTSBTTTTTCCTTCEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhE----------EEEECCEE-CCCcCCHHHcCCCCCCEEEE
Confidence 3566655678888899999999887432 235443221 11234543 22334555555566666655
Q ss_pred eeE
Q 031979 131 VAY 133 (149)
Q Consensus 131 q~~ 133 (149)
..+
T Consensus 71 v~~ 73 (106)
T 3m62_B 71 MVS 73 (106)
T ss_dssp ECC
T ss_pred EEc
Confidence 543
No 130
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=27.26 E-value=23 Score=23.32 Aligned_cols=21 Identities=10% Similarity=0.295 Sum_probs=18.2
Q ss_pred EEEEcCCCchHHHHHHHcCCC
Q 031979 67 NEFDAPDDAYIIDSAEDTGME 87 (149)
Q Consensus 67 ~~~~v~~g~tLLea~~~~Gi~ 87 (149)
..+++++|.|+.+++++.|+.
T Consensus 28 ~~~~v~~g~TV~daI~~~gi~ 48 (97)
T 2hj1_A 28 KSFQVDEGITVQTAITQSGIL 48 (97)
T ss_dssp EEEEEETTCBHHHHHHHHTHH
T ss_pred EEEEcCCCCcHHHHHHHcCCC
Confidence 456788999999999999984
No 131
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=27.18 E-value=78 Score=19.54 Aligned_cols=71 Identities=21% Similarity=0.169 Sum_probs=40.7
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHH----HHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeee
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSA----EDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCV 131 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~----~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq 131 (149)
+|++...+|++..+++++..|+.+.= ...|+++... .-+..|..- .+...|.+-.+.++..+-..
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q----------rLi~~Gk~L-~D~~tL~~~~i~~g~~l~l~ 70 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQ----------RLIYSGKQM-NDEKTAADYKILGGSVLHLV 70 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGC----------EEEETTEEC-CTTSBTTTTTCCTTCEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHE----------EEEECCeEC-CCCCcHHHcCCCCCCEEEEE
Confidence 45554468888899999999987643 3456665331 112344332 23345555556667776666
Q ss_pred eEEcCC
Q 031979 132 AYPTSD 137 (149)
Q Consensus 132 ~~~~~d 137 (149)
.+..+.
T Consensus 71 ~rl~Gg 76 (88)
T 4fbj_B 71 LALRGG 76 (88)
T ss_dssp CBCC--
T ss_pred EECCCC
Confidence 655554
No 132
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=26.96 E-value=83 Score=19.41 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCeEEEEcCCCchHHHHH
Q 031979 55 YKVKLIGPNGEENEFDAPDDAYIIDSA 81 (149)
Q Consensus 55 ~~V~~~~~~G~~~~~~v~~g~tLLea~ 81 (149)
.+|++...+|+..++++++..|+.+.=
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK 37 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVK 37 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHH
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHH
Confidence 356665568888889999999987643
No 133
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=26.84 E-value=99 Score=19.46 Aligned_cols=69 Identities=16% Similarity=0.185 Sum_probs=40.6
Q ss_pred eeEEEEEcCCCCeEEEEcCCCchHHHHH----HHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEe
Q 031979 54 VYKVKLIGPNGEENEFDAPDDAYIIDSA----EDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLT 129 (149)
Q Consensus 54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~----~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~La 129 (149)
..+|.|...+|+...+++++..|+.+.- ++.|+++... .-+..|..- .+...|.+-.+.++..+-
T Consensus 22 ~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q----------rLi~~Gk~L-~D~~tL~~~~i~~g~~i~ 90 (98)
T 4hcn_B 22 PMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ----------RLIFAGKQL-EDGRTLSDYNIQKESTLH 90 (98)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGC----------EEEETTEEC-CTTCBSGGGTCCTTEEEE
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHE----------EEEECCEEC-CCCCcHHHCCCCCCCEEE
Confidence 5677775568888899999999987643 3456655331 123355432 233455555555666554
Q ss_pred eeeE
Q 031979 130 CVAY 133 (149)
Q Consensus 130 Cq~~ 133 (149)
...+
T Consensus 91 l~~r 94 (98)
T 4hcn_B 91 LVLR 94 (98)
T ss_dssp EECB
T ss_pred EEEe
Confidence 4433
No 134
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=26.81 E-value=1e+02 Score=19.19 Aligned_cols=72 Identities=14% Similarity=0.035 Sum_probs=39.8
Q ss_pred CceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeee
Q 031979 52 MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCV 131 (149)
Q Consensus 52 ~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq 131 (149)
+...+|+|...+|+...+++++..|+.+.-.+---.. -.-...+..|..-..+...|.+-.+.++..+-..
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---------~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~ 75 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---------ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCH 75 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---------TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---------cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEE
Confidence 3456777755678777899999999988665532221 1111123345432222145655555666666554
Q ss_pred e
Q 031979 132 A 132 (149)
Q Consensus 132 ~ 132 (149)
.
T Consensus 76 ~ 76 (95)
T 1wia_A 76 R 76 (95)
T ss_dssp C
T ss_pred E
Confidence 4
No 135
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=26.45 E-value=45 Score=20.69 Aligned_cols=34 Identities=15% Similarity=0.037 Sum_probs=26.7
Q ss_pred CCCCeEEEcCCch-----HHHHHHHHHHcCCCCCcccccC
Q 031979 17 RSKKFSLVKSPAS-----LGSTRSVSKAFGLKCSSFKASA 51 (149)
Q Consensus 17 ~~~~~~y~CGP~~-----m~~v~~~~~~~g~~~~~f~~~~ 51 (149)
....+||.-.|.+ +..|...|.. ++..++|.|..
T Consensus 30 ~~k~DvyY~sP~Gkr~RS~~ev~~YL~~-~l~~~~FdF~~ 68 (72)
T 2ky8_A 30 AGKSDVYYFSPSGKKFRSKPQLARYLGN-AVDLSCFDFRT 68 (72)
T ss_dssp TTCEEEEEECTTCCEEESHHHHHHHHTT-SSCCTTCBTTT
T ss_pred CCceEEEEECCCCCEeEcHHHHHHHHhc-CCChhhcCCCC
Confidence 3568899999995 4788888866 78888888753
No 136
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=25.83 E-value=1.2e+02 Score=18.64 Aligned_cols=73 Identities=15% Similarity=0.159 Sum_probs=42.8
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHH----HHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeee
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSA----EDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCV 131 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~----~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq 131 (149)
+|+|...+|+...+++.+..|+.+.- ...|+++.. ..-+..|.. ..+...|.+-.+.++..+-..
T Consensus 3 ~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~----------qrL~~~G~~-L~d~~tL~~~~i~~~~~i~l~ 71 (96)
T 3k9o_B 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ----------QRLIFAGKQ-LEDGRTLSDYNIQKESTLHLV 71 (96)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGG----------EEEEETTEE-CCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhH----------EEEEECCEE-CCCCCcHHHcCCCCCCEEEEE
Confidence 45665467888889999999987643 345665432 112234543 234445666556677777777
Q ss_pred eEEcCCeE
Q 031979 132 AYPTSDCV 139 (149)
Q Consensus 132 ~~~~~d~~ 139 (149)
.+..+...
T Consensus 72 ~r~~gG~~ 79 (96)
T 3k9o_B 72 LRLRGYAD 79 (96)
T ss_dssp ECCCC---
T ss_pred EEcCCCCc
Confidence 66665544
No 137
>1yn3_A EAP2, truncated cell surface protein MAP-W; virulence-factor, toxin, extracellular-adherence protein, protein binding; 1.35A {Staphylococcus aureus}
Probab=25.64 E-value=87 Score=20.71 Aligned_cols=42 Identities=26% Similarity=0.388 Sum_probs=30.5
Q ss_pred HHHHHHH-HHcCCCCCcccccCCceeEEEEEcCCCCeEEEEcCCC
Q 031979 31 GSTRSVS-KAFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDD 74 (149)
Q Consensus 31 ~~v~~~~-~~~g~~~~~f~~~~~~~~~V~~~~~~G~~~~~~v~~g 74 (149)
+-|+..| .+.|+.+..+...--..++|+| .+|..+.+....+
T Consensus 36 ~KVKS~L~~~rgIt~~di~~ak~A~YTV~f--knG~KkvI~LKs~ 78 (98)
T 1yn3_A 36 GKVKSVLESNRGITDVDLRLSKQAKYTVNF--KNGTKKVIDLKSG 78 (98)
T ss_dssp HHHHHHHHHHHCCCHHHHHHSSCEEEEEEE--TTSCEEEEETTCC
T ss_pred HHHHHHHHhhcCCCHHHhhhhheeEEEEEE--cCCcEEEEEcccC
Confidence 3466655 3458887777666566899998 5888888888766
No 138
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=25.57 E-value=62 Score=22.87 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=16.6
Q ss_pred CeEEEcCCch--------HHHHHHHHHHcC
Q 031979 20 KFSLVKSPAS--------LGSTRSVSKAFG 41 (149)
Q Consensus 20 ~~~y~CGP~~--------m~~v~~~~~~~g 41 (149)
..||++||-. ++.+++.+++.|
T Consensus 12 ~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G 41 (165)
T 2khz_A 12 CSVYFCGSIRGGREDQALYARIVSRLRRYG 41 (165)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHHhcC
Confidence 4799999985 245677788777
No 139
>1t1j_A Hypothetical protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.14.2
Probab=24.82 E-value=24 Score=24.38 Aligned_cols=10 Identities=20% Similarity=0.291 Sum_probs=8.2
Q ss_pred CeEEEcCCch
Q 031979 20 KFSLVKSPAS 29 (149)
Q Consensus 20 ~~~y~CGP~~ 29 (149)
.-||+|||=+
T Consensus 9 ~~IYIagPys 18 (125)
T 1t1j_A 9 RKIFLACPYS 18 (125)
T ss_dssp CEEEEECCCC
T ss_pred hheeEECCCC
Confidence 4599999975
No 140
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=24.70 E-value=91 Score=20.15 Aligned_cols=29 Identities=7% Similarity=-0.036 Sum_probs=20.1
Q ss_pred CceeEEEEEcCCCC--eEEEEcCCCchHHHH
Q 031979 52 MAVYKVKLIGPNGE--ENEFDAPDDAYIIDS 80 (149)
Q Consensus 52 ~~~~~V~~~~~~G~--~~~~~v~~g~tLLea 80 (149)
+...+|+|...+|+ ..++++++..|+.+.
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~L 51 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKL 51 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHH
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHH
Confidence 34577888666675 357888999998764
No 141
>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A
Probab=24.45 E-value=1.6e+02 Score=19.72 Aligned_cols=62 Identities=16% Similarity=0.125 Sum_probs=33.5
Q ss_pred EcCCch------HHHHHHHHHHcCCCCCcccccC-------------------CceeEEEEEcCCCCeEEEEcCCCchHH
Q 031979 24 VKSPAS------LGSTRSVSKAFGLKCSSFKASA-------------------MAVYKVKLIGPNGEENEFDAPDDAYII 78 (149)
Q Consensus 24 ~CGP~~------m~~v~~~~~~~g~~~~~f~~~~-------------------~~~~~V~~~~~~G~~~~~~v~~g~tLL 78 (149)
+|||.- +.+.-+.|++.|+.-+||.... ....-++++ || +.+....=-|.-
T Consensus 17 vCG~~vd~~L~~~~~~~~~lk~~Gi~V~RyNL~~~P~aF~~N~~V~~~L~~~G~~~LP~~~V--DG--evv~~G~yPt~e 92 (110)
T 3kgk_A 17 VCGTDVDQALVDFSTDVQWLKQSGVQIERFNLAQQPMSFVQNEKVKAFIEASGAEGLPLLLL--DG--ETVMAGRYPKRA 92 (110)
T ss_dssp -------CHHHHHHHHHHHHHHHTCCEEEEETTTCTTHHHHSHHHHHHHHHHCGGGCCEEEE--TT--EEEEESSCCCHH
T ss_pred CcCCCCCHHHHHHHHHHHHHHHCCCeEEEEccccChHHHhcCHHHHHHHHHcCcccCCEEEE--CC--EEEEeccCCCHH
Confidence 799982 3677788888999988875321 112335553 67 444433334666
Q ss_pred HHHHHcCCCCC
Q 031979 79 DSAEDTGMELP 89 (149)
Q Consensus 79 ea~~~~Gi~i~ 89 (149)
|.++-.||..+
T Consensus 93 El~~~lgi~~~ 103 (110)
T 3kgk_A 93 ELARWFGIPLD 103 (110)
T ss_dssp HHHHHHTCCCC
T ss_pred HHHHHhCCCcc
Confidence 66777777654
No 142
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=24.08 E-value=47 Score=21.64 Aligned_cols=71 Identities=11% Similarity=0.072 Sum_probs=38.7
Q ss_pred ceeEEEEEcC---CCCeEEEEcCC-CchHHHHH----HHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccC
Q 031979 53 AVYKVKLIGP---NGEENEFDAPD-DAYIIDSA----EDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEK 124 (149)
Q Consensus 53 ~~~~V~~~~~---~G~~~~~~v~~-g~tLLea~----~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~ 124 (149)
..++|.|..+ +|+...+++++ ..|+.+.= ...|+++... .-+..|.. ..+...|.+-.+.+
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~Q----------rL~~~Gk~-L~D~~tL~~y~I~~ 94 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQ----------KLSGKAGF-LKDNMSLAHYNVGA 94 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTS----------EEECSSSB-CCTTSBTTTTTCSS
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHe----------EEEECCEE-CCCCCcHHHCCCCC
Confidence 4567777555 67778899998 99987643 2345543221 11223432 12334455545556
Q ss_pred CeEEeeeeEE
Q 031979 125 GFVLTCVAYP 134 (149)
Q Consensus 125 g~~LaCq~~~ 134 (149)
+..+-...+.
T Consensus 95 g~~l~l~~r~ 104 (111)
T 1we6_A 95 GEILTLSLRE 104 (111)
T ss_dssp SCEEEEECSS
T ss_pred CCEEEEEEEc
Confidence 6665554443
No 143
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=23.60 E-value=36 Score=24.97 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=19.3
Q ss_pred chHHHHHHHcCC-C----CCCCCCCc----ccCCc
Q 031979 75 AYIIDSAEDTGM-E----LPYSCRAG----ACSTC 100 (149)
Q Consensus 75 ~tLLea~~~~Gi-~----i~~~C~~G----~CGtC 100 (149)
.-|++.+.+.|+ + ..++|..| -||.|
T Consensus 167 ~ei~~~a~~~gl~~~~~~~t~sC~~~~~~~~CG~C 201 (232)
T 2pg3_A 167 AETWALADYYQQLDTVRYHTLTCYNGIKGDGCGQC 201 (232)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCCTTSCCTTTTSCS
T ss_pred HHHHHHHHHcCCCcccccccCCCcCCCCCCcCCcC
Confidence 458999999998 4 57889733 57766
No 144
>1yn4_A EAPH1; virulence factor, toxin, extracellular adherence protein, unknown function; 1.80A {Staphylococcus aureus}
Probab=22.93 E-value=1.1e+02 Score=20.29 Aligned_cols=43 Identities=12% Similarity=0.272 Sum_probs=31.0
Q ss_pred HHHHHHH-HHcCCCCCcccccCCceeEEEEEcCCCCeEEEEcCCCc
Q 031979 31 GSTRSVS-KAFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDDA 75 (149)
Q Consensus 31 ~~v~~~~-~~~g~~~~~f~~~~~~~~~V~~~~~~G~~~~~~v~~g~ 75 (149)
+-|+..| .+.|+.+..+...--..++|+| .+|..+.+....+.
T Consensus 37 ~KVKS~L~~~rgIt~~di~~ak~A~YTV~f--kNG~KkvI~LK~~~ 80 (99)
T 1yn4_A 37 SKVKNELASQRGVTTEKINNAQTATYTLTL--NDGNKKVVNLKKND 80 (99)
T ss_dssp HHHHHHHHHHHCCCHHHHHTSSCEEEEEEE--TTSCEEEEESSCCG
T ss_pred HHHHHHHHhccCCCHHHHhhhheeeEEEEE--cCCcEEEEEcccCc
Confidence 4466655 3458887777665566899998 58888889887764
No 145
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=22.77 E-value=1e+02 Score=19.24 Aligned_cols=26 Identities=12% Similarity=0.072 Sum_probs=19.1
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHH
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSA 81 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~ 81 (149)
+|++...+|+...+++++..|+.+.-
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK 27 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKALK 27 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHH
Confidence 45554457877889999999987643
No 146
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=21.91 E-value=1.1e+02 Score=19.33 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=25.9
Q ss_pred ceeEEEEEcCCCCeEEEEcCCCchHHHHH----HHcCCCC
Q 031979 53 AVYKVKLIGPNGEENEFDAPDDAYIIDSA----EDTGMEL 88 (149)
Q Consensus 53 ~~~~V~~~~~~G~~~~~~v~~g~tLLea~----~~~Gi~i 88 (149)
...+|++...+|+...+++.+..||.+.- .+.||++
T Consensus 20 ~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~ 59 (97)
T 1wyw_B 20 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPM 59 (97)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCG
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCh
Confidence 35678886678888889999998876643 3356654
No 147
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=21.88 E-value=14 Score=27.46 Aligned_cols=15 Identities=13% Similarity=0.222 Sum_probs=13.2
Q ss_pred HHHHHHHHHHcCCCC
Q 031979 30 LGSTRSVSKAFGLKC 44 (149)
Q Consensus 30 m~~v~~~~~~~g~~~ 44 (149)
.+.++++|+++|++.
T Consensus 101 ~~kAk~LL~eaG~~~ 115 (258)
T 3lvu_A 101 LRRAAQFLEQAGFRI 115 (258)
T ss_dssp HHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCEe
Confidence 789999999999973
No 148
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.82 E-value=42 Score=25.25 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCeEEEEcCCC--chHHHHHHHcCCCCCCCCC
Q 031979 55 YKVKLIGPNGEENEFDAPDD--AYIIDSAEDTGMELPYSCR 93 (149)
Q Consensus 55 ~~V~~~~~~G~~~~~~v~~g--~tLLea~~~~Gi~i~~~C~ 93 (149)
.+|.| +.+| .... ..| .-++++|+++|+.+|++=.
T Consensus 100 ~~vvf-Drgg--~~y~-~hgRV~Ala~gAre~GL~iPhs~~ 136 (203)
T 3j21_O 100 EEAIL-DIGL--HPPV-RGSSVFAVLKGAVDAGLNVPHSPE 136 (203)
T ss_dssp CCCEE-ECCS--SCCC-TTSHHHHHHHHHHHHTCCCCCCSS
T ss_pred CEEEE-ecCc--ceec-cCcchhhhhhhcccCCeecccCCc
Confidence 45666 5666 2221 123 5799999999999999854
No 149
>2lg4_A Aurelin; antimicrobial protein; NMR {Aurelia aurita}
Probab=27.39 E-value=19 Score=19.99 Aligned_cols=17 Identities=29% Similarity=0.939 Sum_probs=13.3
Q ss_pred HcCCCCCCCCCCcccCCc
Q 031979 83 DTGMELPYSCRAGACSTC 100 (149)
Q Consensus 83 ~~Gi~i~~~C~~G~CGtC 100 (149)
++|..+.+.|.+ .||.|
T Consensus 24 ~ng~~~r~~C~k-TCG~C 40 (40)
T 2lg4_A 24 RNGVKLRANCKK-TCGLC 40 (40)
Confidence 678888888885 67766
No 150
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=21.47 E-value=1.7e+02 Score=18.82 Aligned_cols=36 Identities=8% Similarity=0.141 Sum_probs=25.6
Q ss_pred ceeEEEEEcCCCCeEEEEcCCCchHHHHH----HHcCCCC
Q 031979 53 AVYKVKLIGPNGEENEFDAPDDAYIIDSA----EDTGMEL 88 (149)
Q Consensus 53 ~~~~V~~~~~~G~~~~~~v~~g~tLLea~----~~~Gi~i 88 (149)
...+|++...+|+...+++++..|+.+.- ...|+++
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 73 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 73 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCT
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCc
Confidence 45778886567877889999999987643 3346553
No 151
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=21.44 E-value=1.4e+02 Score=17.73 Aligned_cols=21 Identities=10% Similarity=0.083 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHcCCC
Q 031979 67 NEFDAPDDAYIIDSAEDTGME 87 (149)
Q Consensus 67 ~~~~v~~g~tLLea~~~~Gi~ 87 (149)
++++++++.|+.+.+.+.+++
T Consensus 16 ~~~~~~~~~tv~~Ll~~l~~~ 36 (70)
T 1ryj_A 16 KILESGAPRRIKDVLGELEIP 36 (70)
T ss_dssp EEEEESSCCBHHHHHHHTTCC
T ss_pred eeEECCCCCcHHHHHHHhCCC
Confidence 458888999999999998875
No 152
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=21.33 E-value=2e+02 Score=19.48 Aligned_cols=75 Identities=13% Similarity=0.152 Sum_probs=44.8
Q ss_pred eEEEEEcCCCCeEEEEcCCCchHHHH----HHHcCCCCCCCCCCcccCCcEEEEe---eCcccCCCCCCCChhhccCCeE
Q 031979 55 YKVKLIGPNGEENEFDAPDDAYIIDS----AEDTGMELPYSCRAGACSTCAGQMV---SGSVDQSDGSFLDDKQMEKGFV 127 (149)
Q Consensus 55 ~~V~~~~~~G~~~~~~v~~g~tLLea----~~~~Gi~i~~~C~~G~CGtC~v~v~---~G~v~~~~~~~L~~~~~~~g~~ 127 (149)
.+|++...+|+...+++++..|+.+. ....|+++.. -++. .|.. ..+...|.+-.+.++..
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~-----------QrL~~~~~g~~-L~d~~tL~~y~i~~~~~ 70 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQ-----------QRLAVHPSGVA-LQDRVPLASQGLGPGST 70 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGG-----------EEEEEETTCCB-CCTTSCGGGGTCCTTCE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHH-----------EEEEEcCCCCC-CCCCCCHHHcCCCCCCE
Confidence 35666546888889999999999876 3446776532 2333 4543 23444566555666766
Q ss_pred EeeeeE-EcCCeEEE
Q 031979 128 LTCVAY-PTSDCVIY 141 (149)
Q Consensus 128 LaCq~~-~~~d~~I~ 141 (149)
+-...+ ..+.+.|.
T Consensus 71 l~l~~~~~~~~m~i~ 85 (159)
T 3rt3_B 71 VLLVVDKSDEPLSIL 85 (159)
T ss_dssp EEEEECCCCCCEEEE
T ss_pred EEEEccCCCCcEEEE
Confidence 666655 23344433
No 153
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=21.32 E-value=1.8e+02 Score=19.15 Aligned_cols=75 Identities=16% Similarity=0.210 Sum_probs=41.5
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHH----HHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeee
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSA----EDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCV 131 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~----~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq 131 (149)
+|++...+|+...+++++..|+.+.- ...|+++... .-+..|.. ..+...|.+-.+.++..+-..
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q----------~L~~~g~~-L~d~~tL~~~~i~~~~~l~l~ 70 (152)
T 3b08_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ----------RLIFAGKQ-LEDGRTLSDYNIQKESTLHLV 70 (152)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGE----------EEEETTEE-CCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHe----------EEEECCeE-CcCcccHHHhccCCCCeeEEE
Confidence 45554467878889999999988754 3456653211 11123332 123344555555566666666
Q ss_pred eEEcCCeEEE
Q 031979 132 AYPTSDCVIY 141 (149)
Q Consensus 132 ~~~~~d~~I~ 141 (149)
.+..+.+.|.
T Consensus 71 ~~~~~~~~i~ 80 (152)
T 3b08_A 71 LRLRGGMQIF 80 (152)
T ss_dssp ECCTTCEEEE
T ss_pred eeccccccee
Confidence 5555444433
No 154
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=20.71 E-value=28 Score=31.15 Aligned_cols=19 Identities=16% Similarity=0.008 Sum_probs=15.6
Q ss_pred CeEEEcCCchHHHHHHHHH
Q 031979 20 KFSLVKSPASLGSTRSVSK 38 (149)
Q Consensus 20 ~~~y~CGP~~m~~v~~~~~ 38 (149)
..+|.|||.++.||++.-.
T Consensus 404 ~g~~~CGPasV~AIKeG~v 422 (731)
T 1ex0_A 404 DGMYRCGPASVQAIKHGHV 422 (731)
T ss_dssp SSEEEEEEEEHHHHHHTCT
T ss_pred CCccccCCcchhheecccc
Confidence 4599999999999987443
No 155
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=20.58 E-value=1.6e+02 Score=18.04 Aligned_cols=71 Identities=15% Similarity=0.158 Sum_probs=38.1
Q ss_pred eEEEEEcCCCCeEEEEcCCCchHHHHH----HHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEee
Q 031979 55 YKVKLIGPNGEENEFDAPDDAYIIDSA----EDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTC 130 (149)
Q Consensus 55 ~~V~~~~~~G~~~~~~v~~g~tLLea~----~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaC 130 (149)
++|.+...+|+...+++++..|+.+.- +..|+++... .-+..|..- .+...|++-.+.++..+-.
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q----------rL~~~Gk~L-~D~~tL~~~gi~~g~~i~l 78 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQ----------RLIFAGKQL-EDGRTLSDYNIQKESTLHL 78 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGC----------EEEETTEEC-CTTSBSGGGTCCTTCEEEE
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhE----------EEEECCEEC-CCCCcHHHcCCCCCCEEEE
Confidence 456655578888889999999987633 3456654221 112234321 2334455555566666655
Q ss_pred eeEEcC
Q 031979 131 VAYPTS 136 (149)
Q Consensus 131 q~~~~~ 136 (149)
..+..+
T Consensus 79 ~~r~~G 84 (88)
T 1sif_A 79 VLRLRG 84 (88)
T ss_dssp EC----
T ss_pred EEeCCC
Confidence 554443
No 156
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=20.37 E-value=66 Score=23.70 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=20.0
Q ss_pred EEEEEcCCCCeEEEEcCCCchHHHHHHHcC
Q 031979 56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTG 85 (149)
Q Consensus 56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~G 85 (149)
+|++ ++| ...+++.|.|+++.+.+-+
T Consensus 3 ~I~~--p~G--~~~~~~~g~T~~dia~~i~ 28 (224)
T 1tke_A 3 VITL--PDG--SQRHYDHAVSPMDVALDIG 28 (224)
T ss_dssp EEEC--TTS--CEEECSSCBCHHHHHHHHC
T ss_pred EEEe--CCC--CEEEecCCCCHHHHHHHHh
Confidence 4554 688 5688899999999997753
No 157
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=20.24 E-value=1.5e+02 Score=24.45 Aligned_cols=11 Identities=9% Similarity=-0.230 Sum_probs=8.9
Q ss_pred CCCeEEEcCCc
Q 031979 18 SKKFSLVKSPA 28 (149)
Q Consensus 18 ~~~~~y~CGP~ 28 (149)
..-.+|+|||.
T Consensus 21 ~~v~~yv~gPt 31 (461)
T 1li5_A 21 GEVGMYVCGIT 31 (461)
T ss_dssp TEEEEEECCCB
T ss_pred CCeeEEEcCCc
Confidence 34679999998
Done!