BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031980
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AV1|A Chain A, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV1|E Chain E, The Human Nucleosome Structure Containing The Histone
Variant H3.2
Length = 139
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/145 (48%), Positives = 89/145 (61%), Gaps = 11/145 (7%)
Query: 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
MARTK AR+S+ +A P T R+S G +K R RPGT ALRE
Sbjct: 4 MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 54
Query: 61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAM 120
IRR+QKS +LLI ++ F R VR I D+ R+ A++ALQEA+E +LV LF D
Sbjct: 55 IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQEASEAYLVGLFEDTN 112
Query: 121 LCAIHAKRVTLMKKDFELARRLGGK 145
LCAIHAKRVT+M KD +LARR+ G+
Sbjct: 113 LCAIHAKRVTIMPKDIQLARRIRGE 137
>pdb|2HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein
pdb|1EQZ|C Chain C, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|G Chain G, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1HQ3|C Chain C, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|G Chain G, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1TZY|C Chain C, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|1TZY|G Chain G, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|2ARO|C Chain C, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2ARO|G Chain G, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2F8N|A Chain A, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
pdb|2F8N|E Chain E, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 136
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/145 (48%), Positives = 89/145 (61%), Gaps = 11/145 (7%)
Query: 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
MARTK AR+S+ +A P T R+S G +K R RPGT ALRE
Sbjct: 1 MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 51
Query: 61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAM 120
IRR+QKS +LLI ++ F R VR I D+ R+ A++ALQEA+E +LV LF D
Sbjct: 52 IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQEASEAYLVGLFEDTN 109
Query: 121 LCAIHAKRVTLMKKDFELARRLGGK 145
LCAIHAKRVT+M KD +LARR+ G+
Sbjct: 110 LCAIHAKRVTIMPKDIQLARRIRGE 134
>pdb|3AFA|A Chain A, The Human Nucleosome Structure
pdb|3AFA|E Chain E, The Human Nucleosome Structure
pdb|3AZI|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZI|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZJ|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZJ|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZK|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZK|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZL|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZL|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZM|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZM|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZN|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
pdb|3AZN|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
Length = 139
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/145 (48%), Positives = 88/145 (60%), Gaps = 11/145 (7%)
Query: 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
MARTK AR+S+ +A P T R+S G +K R RPGT ALRE
Sbjct: 4 MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 54
Query: 61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAM 120
IRR+QKS +LLI ++ F R VR I D+ R+ A++ALQEA E +LV LF D
Sbjct: 55 IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQEACEAYLVGLFEDTN 112
Query: 121 LCAIHAKRVTLMKKDFELARRLGGK 145
LCAIHAKRVT+M KD +LARR+ G+
Sbjct: 113 LCAIHAKRVTIMPKDIQLARRIRGE 137
>pdb|2CV5|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
pdb|2CV5|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
pdb|1U35|A Chain A, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|1U35|E Chain E, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
Length = 136
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/145 (48%), Positives = 88/145 (60%), Gaps = 11/145 (7%)
Query: 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
MARTK AR+S+ +A P T R+S G +K R RPGT ALRE
Sbjct: 1 MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 51
Query: 61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAM 120
IRR+QKS +LLI ++ F R VR I D+ R+ A++ALQEA E +LV LF D
Sbjct: 52 IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQEACEAYLVGLFEDTN 109
Query: 121 LCAIHAKRVTLMKKDFELARRLGGK 145
LCAIHAKRVT+M KD +LARR+ G+
Sbjct: 110 LCAIHAKRVTIMPKDIQLARRIRGE 134
>pdb|3AZF|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZF|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
Length = 139
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/145 (48%), Positives = 88/145 (60%), Gaps = 11/145 (7%)
Query: 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
MARTK AR+S+ +A P T R+S G +K R RPGT ALRE
Sbjct: 4 MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 54
Query: 61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAM 120
IRR+QKS +LLI ++ F R VR I D+ R+ A++ALQEA E +LV LF D
Sbjct: 55 IRRYQKSTELLIRKLPFQRLVREIAQDF-QTDL-RFQSSAVMALQEACEAYLVGLFEDTN 112
Query: 121 LCAIHAKRVTLMKKDFELARRLGGK 145
LCAIHAKRVT+M KD +LARR+ G+
Sbjct: 113 LCAIHAKRVTIMPKDIQLARRIRGE 137
>pdb|3LEL|A Chain A, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|E Chain E, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|K Chain K, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|O Chain O, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
Length = 136
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/145 (48%), Positives = 89/145 (61%), Gaps = 11/145 (7%)
Query: 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
MARTK AR+S+ +A P T R+S G +K R RPGT ALRE
Sbjct: 1 MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 51
Query: 61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAM 120
IRR+QKS +LLI ++ F R VR I D+ R+ A++ALQEA+E +LV LF D
Sbjct: 52 IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQEASEAYLVALFEDTN 109
Query: 121 LCAIHAKRVTLMKKDFELARRLGGK 145
LCAIHAKRVT+M KD +LARR+ G+
Sbjct: 110 LCAIHAKRVTIMPKDIQLARRIRGE 134
>pdb|1F66|A Chain A, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1F66|E Chain E, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
Length = 136
Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/145 (48%), Positives = 89/145 (61%), Gaps = 11/145 (7%)
Query: 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
MARTK AR+S+ +A P T R+S G +K R RPGT ALRE
Sbjct: 1 MARTKQTARKSTGGKA------PRKQLATKAARKSAPATGEV---KKPHRYRPGTVALRE 51
Query: 61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAM 120
IRR+QKS +LLI ++ F R VR I D+ R+ A++ALQEA+E +LV LF D
Sbjct: 52 IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQEASEAYLVALFEDTN 109
Query: 121 LCAIHAKRVTLMKKDFELARRLGGK 145
LCAIHAKRVT+M KD +LARR+ G+
Sbjct: 110 LCAIHAKRVTIMPKDIQLARRIRGE 134
>pdb|3AZE|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZE|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
Length = 139
Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/145 (48%), Positives = 88/145 (60%), Gaps = 11/145 (7%)
Query: 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
MARTK AR+S+ +A P T R+S G +K R RPGT ALRE
Sbjct: 4 MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 54
Query: 61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAM 120
IRR+QKS +LLI ++ F R VR I D+ R+ A++ALQEA E +LV LF D
Sbjct: 55 IRRYQKSTELLIRQLPFQRLVREIAQDF-KTDL-RFQSSAVMALQEACEAYLVGLFEDTN 112
Query: 121 LCAIHAKRVTLMKKDFELARRLGGK 145
LCAIHAKRVT+M KD +LARR+ G+
Sbjct: 113 LCAIHAKRVTIMPKDIQLARRIRGE 137
>pdb|3AZH|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZH|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
Length = 139
Score = 106 bits (265), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/145 (47%), Positives = 88/145 (60%), Gaps = 11/145 (7%)
Query: 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
MARTK AR+S+ +A P T R+S G +K R RPGT ALRE
Sbjct: 4 MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 54
Query: 61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAM 120
IRR+QKS +LLI ++ F R VR I D+ R+ A++ALQEA E +LV LF D
Sbjct: 55 IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQEACEAYLVGLFEDTN 112
Query: 121 LCAIHAKRVTLMKKDFELARRLGGK 145
LCAIHAKRVT+M +D +LARR+ G+
Sbjct: 113 LCAIHAKRVTIMPQDIQLARRIRGE 137
>pdb|3AZG|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZG|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
Length = 139
Score = 106 bits (265), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/145 (47%), Positives = 88/145 (60%), Gaps = 11/145 (7%)
Query: 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
MARTK AR+S+ +A P T R+S G +K R RPGT ALRE
Sbjct: 4 MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 54
Query: 61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAM 120
IRR+QKS +LLI ++ F R VR I D+ R+ A++ALQEA E +LV LF D
Sbjct: 55 IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQEACEAYLVGLFEDTN 112
Query: 121 LCAIHAKRVTLMKKDFELARRLGGK 145
LCAIHA+RVT+M KD +LARR+ G+
Sbjct: 113 LCAIHAQRVTIMPKDIQLARRIRGE 137
>pdb|3AYW|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AYW|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
Length = 139
Score = 106 bits (265), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/145 (47%), Positives = 88/145 (60%), Gaps = 11/145 (7%)
Query: 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
MARTK AR+S+ +A P T R+S G +K R RPGT ALRE
Sbjct: 4 MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 54
Query: 61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAM 120
IRR+Q+S +LLI ++ F R VR I D+ R+ A++ALQEA E +LV LF D
Sbjct: 55 IRRYQQSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQEACEAYLVGLFEDTN 112
Query: 121 LCAIHAKRVTLMKKDFELARRLGGK 145
LCAIHAKRVT+M KD +LARR+ G+
Sbjct: 113 LCAIHAKRVTIMPKDIQLARRIRGE 137
>pdb|3AV2|A Chain A, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AV2|E Chain E, The Human Nucleosome Structure Containing The Histone
Variant H3.3
Length = 139
Score = 106 bits (264), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/145 (48%), Positives = 88/145 (60%), Gaps = 11/145 (7%)
Query: 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
MARTK AR+S+ +A P T R+S G +K R RPGT ALRE
Sbjct: 4 MARTKQTARKSTGGKA------PRKQLATKAARKSAPSTG---GVKKPHRYRPGTVALRE 54
Query: 61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAM 120
IRR+QKS +LLI ++ F R VR I D+ R+ A+ ALQEA+E +LV LF D
Sbjct: 55 IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSAAIGALQEASEAYLVGLFEDTN 112
Query: 121 LCAIHAKRVTLMKKDFELARRLGGK 145
LCAIHAKRVT+M KD +LARR+ G+
Sbjct: 113 LCAIHAKRVTIMPKDIQLARRIRGE 137
>pdb|1P3B|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 105 bits (263), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/149 (48%), Positives = 91/149 (61%), Gaps = 21/149 (14%)
Query: 2 ARTKHMARRSS-----RLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTK 56
ARTK AR+S+ R Q A KA S+P T GE +K R RPGT
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARK-SAPAT--------GES-----KKPHRYRPGTV 46
Query: 57 ALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLF 116
ALREIRR+QKS +LLI ++ F R VR I D+ R+ A++ALQEA+E +LV LF
Sbjct: 47 ALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQEASEAYLVALF 104
Query: 117 GDAMLCAIHAKRVTLMKKDFELARRLGGK 145
D LCAIHAKRVT+M KD +LARR+ G+
Sbjct: 105 EDTNLCAIHAKRVTIMPKDIQLARRIRGE 133
>pdb|4HGA|B Chain B, Structure Of The Variant Histone H3.3-H4 Heterodimer In
Complex With Its Chaperone Daxx
Length = 136
Score = 105 bits (263), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/145 (48%), Positives = 88/145 (60%), Gaps = 11/145 (7%)
Query: 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
MARTK AR+S+ +A P T R+S G +K R RPGT ALRE
Sbjct: 1 MARTKQTARKSTGGKA------PRKQLATKAARKSAPSTG---GVKKPHRYRPGTVALRE 51
Query: 61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAM 120
IRR+QKS +LLI ++ F R VR I D+ R+ A+ ALQEA+E +LV LF D
Sbjct: 52 IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSAAIGALQEASEAYLVGLFEDTN 109
Query: 121 LCAIHAKRVTLMKKDFELARRLGGK 145
LCAIHAKRVT+M KD +LARR+ G+
Sbjct: 110 LCAIHAKRVTIMPKDIQLARRIRGE 134
>pdb|2IO5|B Chain B, Crystal Structure Of The Cia- Histone H3-H4 Complex
pdb|2NQB|A Chain A, Drosophila Nucleosome Structure
pdb|2NQB|E Chain E, Drosophila Nucleosome Structure
pdb|2PYO|A Chain A, Drosophila Nucleosome Core
pdb|2PYO|E Chain E, Drosophila Nucleosome Core
pdb|3C9K|C Chain C, Model Of Histone Octamer Tubular Crystals
pdb|3C9K|G Chain G, Model Of Histone Octamer Tubular Crystals
Length = 135
Score = 105 bits (263), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 88/144 (61%), Gaps = 11/144 (7%)
Query: 2 ARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61
ARTK AR+S+ +A P T R+S G +K R RPGT ALREI
Sbjct: 1 ARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALREI 51
Query: 62 RRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAML 121
RR+QKS +LLI ++ F R VR I D+ R+ A++ALQEA+E +LV LF D L
Sbjct: 52 RRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQEASEAYLVGLFEDTNL 109
Query: 122 CAIHAKRVTLMKKDFELARRLGGK 145
CAIHAKRVT+M KD +LARR+ G+
Sbjct: 110 CAIHAKRVTIMPKDIQLARRIRGE 133
>pdb|3A6N|A Chain A, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3A6N|E Chain E, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
Length = 139
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/145 (46%), Positives = 87/145 (60%), Gaps = 11/145 (7%)
Query: 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
MARTK AR+S+ +A P T R+S G +K R RPGT ALRE
Sbjct: 4 MARTKQTARKSTGGKA------PRKQLATKVARKSAPATG---GVKKPHRYRPGTVALRE 54
Query: 61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAM 120
IRR+QKS +LLI ++ F R +R I D+ R+ A++ALQEA E +LV LF D
Sbjct: 55 IRRYQKSTELLIRKLPFQRLMREIAQDF-KTDL-RFQSSAVMALQEACESYLVGLFEDTN 112
Query: 121 LCAIHAKRVTLMKKDFELARRLGGK 145
LC IHAKRVT+M KD +LARR+ G+
Sbjct: 113 LCVIHAKRVTIMPKDIQLARRIRGE 137
>pdb|1KX3|A Chain A, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX3|E Chain E, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX4|A Chain A, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX4|E Chain E, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX5|A Chain A, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1KX5|E Chain E, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1S32|A Chain A, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1S32|E Chain E, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1ZBB|A Chain A, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|E Chain E, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|AA Chain a, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|EE Chain e, Structure Of The 4_601_167 Tetranucleosome
pdb|2FJ7|A Chain A, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2FJ7|E Chain E, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2NZD|A Chain A, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|2NZD|E Chain E, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|3B6F|A Chain A, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6F|E Chain E, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6G|A Chain A, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3B6G|E Chain E, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3C1B|A Chain A, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1B|E Chain E, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3KUY|A Chain A, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3KUY|E Chain E, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3LJA|A Chain A, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3LJA|E Chain E, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3MGP|A Chain A, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGP|E Chain E, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGQ|A Chain A, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGQ|E Chain E, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGR|A Chain A, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGR|E Chain E, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGS|A Chain A, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MGS|E Chain E, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MVD|A Chain A, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|E Chain E, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3LZ0|A Chain A, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ0|E Chain E, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ1|A Chain A, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3LZ1|E Chain E, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3O62|A Chain A, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3O62|E Chain E, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3MNN|A Chain A, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3MNN|E Chain E, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3TU4|A Chain A, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3TU4|E Chain E, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3REH|A Chain A, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REH|E Chain E, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REI|A Chain A, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REI|E Chain E, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REJ|A Chain A, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REJ|E Chain E, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REK|A Chain A, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REK|E Chain E, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REL|A Chain A, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REL|E Chain E, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3UT9|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UT9|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UTA|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTA|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTB|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|3UTB|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
Length = 135
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 88/144 (61%), Gaps = 11/144 (7%)
Query: 2 ARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61
ARTK AR+S+ +A P T R+S G +K R RPGT ALREI
Sbjct: 1 ARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALREI 51
Query: 62 RRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAML 121
RR+QKS +LLI ++ F R VR I D+ R+ A++ALQEA+E +LV LF D L
Sbjct: 52 RRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQEASEAYLVALFEDTNL 109
Query: 122 CAIHAKRVTLMKKDFELARRLGGK 145
CAIHAKRVT+M KD +LARR+ G+
Sbjct: 110 CAIHAKRVTIMPKDIQLARRIRGE 133
>pdb|4H9S|A Chain A, Complex Structure 6 Of DaxxH3.3(SUB7)H4
pdb|4H9S|B Chain B, Complex Structure 6 Of DaxxH3.3(SUB7)H4
Length = 135
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/144 (48%), Positives = 85/144 (59%), Gaps = 11/144 (7%)
Query: 2 ARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61
ARTK AR+S+ +A P T R+S G +K R RPGT ALREI
Sbjct: 1 ARTKQTARKSTGGKA------PRKQLATKAARKSAPSTG---GVKKPHRYRPGTVALREI 51
Query: 62 RRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAML 121
RR+QKS +LLI ++ F R VR I D+ RW A+ ALQEAAE FLV LF D L
Sbjct: 52 RRYQKSTELLIRKLPFQRLVREICQDF-KTDL-RWQSAAIGALQEAAEAFLVALFEDTNL 109
Query: 122 CAIHAKRVTLMKKDFELARRLGGK 145
C IHAKRVT+ KD +LARR+ G+
Sbjct: 110 CTIHAKRVTIFPKDIQLARRIRGE 133
>pdb|1P3A|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 90/149 (60%), Gaps = 21/149 (14%)
Query: 2 ARTKHMARRSS-----RLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTK 56
ARTK AR+S+ R Q A KA S+P T GE +K R RPGT
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAAR-KSAPAT--------GES-----KKPHRYRPGTV 46
Query: 57 ALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLF 116
ALREIRR+QKS +LLI ++ F R VR I D+ R+ A++ALQEA+E +LV LF
Sbjct: 47 ALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQEASEAYLVALF 104
Query: 117 GDAMLCAIHAKRVTLMKKDFELARRLGGK 145
D LCAIHAK VT+M KD +LARR+ G+
Sbjct: 105 EDTNLCAIHAKHVTIMPKDIQLARRIRGE 133
>pdb|1P3K|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 90/149 (60%), Gaps = 21/149 (14%)
Query: 2 ARTKHMARRSS-----RLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTK 56
ARTK AR+S+ R Q A KA S+P T GE +K R RPGT
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAAR-KSAPAT--------GES-----KKPHRYRPGTV 46
Query: 57 ALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLF 116
ALREIRR+QKS +LLI ++ F R VR I D+ R+ A++ALQEA+E +LV LF
Sbjct: 47 ALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQEASEAYLVALF 104
Query: 117 GDAMLCAIHAKRVTLMKKDFELARRLGGK 145
D LCAIHAKRV +M KD +LARR+ G+
Sbjct: 105 EDTNLCAIHAKRVAIMPKDIQLARRIRGE 133
>pdb|1P3M|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 90/149 (60%), Gaps = 21/149 (14%)
Query: 2 ARTKHMARRSS-----RLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTK 56
ARTK AR+S+ R Q A KA S+P T GE +K R RPGT
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAAR-KSAPAT--------GES-----KKPHRYRPGTV 46
Query: 57 ALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLF 116
ALREIRR+QKS +LLI ++ F R VR I D+ R+ A++ALQEA+E +LV LF
Sbjct: 47 ALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQEASEAYLVALF 104
Query: 117 GDAMLCAIHAKRVTLMKKDFELARRLGGK 145
D LCAIHAKRV +M KD +LARR+ G+
Sbjct: 105 EDTNLCAIHAKRVIIMPKDIQLARRIRGE 133
>pdb|3KXB|A Chain A, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3KXB|E Chain E, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
Length = 135
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 88/144 (61%), Gaps = 11/144 (7%)
Query: 2 ARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61
ARTK AR+S+ +A P T R+S G +K R RPGT ALREI
Sbjct: 1 ARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALREI 51
Query: 62 RRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAML 121
RR+Q+S +LLI ++ F R VR I D+ R+ A++ALQEA+E +LV LF D L
Sbjct: 52 RRYQESTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQEASEAYLVALFEDTNL 109
Query: 122 CAIHAKRVTLMKKDFELARRLGGK 145
CAIHAKRVT+M KD +LARR+ G+
Sbjct: 110 CAIHAKRVTIMPKDIQLARRIRGE 133
>pdb|1P3L|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 90/149 (60%), Gaps = 21/149 (14%)
Query: 2 ARTKHMARRSS-----RLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTK 56
ARTK AR+S+ R Q A KA S+P T GE +K R RPGT
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAAR-KSAPAT--------GES-----KKPHRYRPGTV 46
Query: 57 ALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLF 116
ALREIRR+QKS +LLI ++ F R VR I D+ R+ A++ALQEA+E +LV LF
Sbjct: 47 ALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQEASEAYLVALF 104
Query: 117 GDAMLCAIHAKRVTLMKKDFELARRLGGK 145
D LCAIHAKRV +M KD +LARR+ G+
Sbjct: 105 EDTNLCAIHAKRVHIMPKDIQLARRIRGE 133
>pdb|4H9O|A Chain A, Complex Structure 2 Of DaxxH3.3(SUB5,G90M)H4
Length = 135
Score = 103 bits (257), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 86/144 (59%), Gaps = 11/144 (7%)
Query: 2 ARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61
ARTK AR+S+ +A P T R+S G +K R RPGT ALREI
Sbjct: 1 ARTKQTARKSTGGKA------PRKQLATKAARKSAPSTG---GVKKPHRYRPGTVALREI 51
Query: 62 RRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAML 121
RR+QKS +LLI ++ F R VR I D+ R+ A++ALQEAAE FLV LF D L
Sbjct: 52 RRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSAAIMALQEAAEAFLVALFEDTNL 109
Query: 122 CAIHAKRVTLMKKDFELARRLGGK 145
C IHAKRVT+ KD +LARR+ G+
Sbjct: 110 CTIHAKRVTIFPKDIQLARRIRGE 133
>pdb|1P34|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P34|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 103 bits (257), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 90/149 (60%), Gaps = 21/149 (14%)
Query: 2 ARTKHMARRSS-----RLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTK 56
ARTK AR+S+ R Q A KA S+P T GE +K R RPGT
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARK-SAPAT--------GES-----KKPHRYRPGTV 46
Query: 57 ALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLF 116
ALREIRR+QKS +LLI ++ F R VR I D+ R+ A++ALQEA+E +LV LF
Sbjct: 47 ALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQEASEAYLVALF 104
Query: 117 GDAMLCAIHAKRVTLMKKDFELARRLGGK 145
D LCAIHAK VT+M KD +LARR+ G+
Sbjct: 105 EDTNLCAIHAKAVTIMPKDIQLARRIRGE 133
>pdb|1ZLA|A Chain A, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|1ZLA|E Chain E, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
Length = 135
Score = 102 bits (255), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 87/144 (60%), Gaps = 11/144 (7%)
Query: 2 ARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61
ARTK AR+S+ +A P T R+S G +K R RPGT ALREI
Sbjct: 1 ARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALREI 51
Query: 62 RRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAML 121
RR+QKS +LLI ++ F R VR I D+ R+ A++ALQEA+E +LV LF D L
Sbjct: 52 RRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQEASEAYLVALFEDTNL 109
Query: 122 CAIHAKRVTLMKKDFELARRLGGK 145
CAIHAKRV +M KD +LARR+ G+
Sbjct: 110 CAIHAKRVHIMPKDIQLARRIRGE 133
>pdb|1M18|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M18|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
Length = 135
Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 87/149 (58%), Gaps = 21/149 (14%)
Query: 2 ARTKHMARRSS-----RLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTK 56
ARTK AR+S+ R Q KA +P T +K R RPGT
Sbjct: 1 ARTKQTARKSTGGKAPRKQLVTKAAKK-CAPATG-------------GVKKPHRYRPGTV 46
Query: 57 ALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLF 116
ALREIRR+QKS +LLI ++ F R VR I D+ R+ A++ALQEA+E +LV LF
Sbjct: 47 ALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQEASEAYLVALF 104
Query: 117 GDAMLCAIHAKRVTLMKKDFELARRLGGK 145
D LCAIHAKRVT+M KD +LARR+ G+
Sbjct: 105 EDTNLCAIHAKRVTIMPKDIQLARRIRGE 133
>pdb|4H9N|A Chain A, Complex Structure 1 Of DaxxH3.3(SUB5)H4
pdb|4H9Q|A Chain A, Complex Structure 4 Of Daxx(E225a)H3.3(SUB5)H4
Length = 135
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 85/144 (59%), Gaps = 11/144 (7%)
Query: 2 ARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61
ARTK AR+S+ +A P T R+S G +K R RPGT ALREI
Sbjct: 1 ARTKQTARKSTGGKA------PRKQLATKAARKSAPSTG---GVKKPHRYRPGTVALREI 51
Query: 62 RRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAML 121
RR+QKS +LLI ++ F R VR I D+ R+ A+ ALQEAAE FLV LF D L
Sbjct: 52 RRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSAAIGALQEAAEAFLVALFEDTNL 109
Query: 122 CAIHAKRVTLMKKDFELARRLGGK 145
C IHAKRVT+ KD +LARR+ G+
Sbjct: 110 CTIHAKRVTIFPKDIQLARRIRGE 133
>pdb|3C1C|A Chain A, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|E Chain E, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
Length = 135
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 87/144 (60%), Gaps = 11/144 (7%)
Query: 2 ARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61
ARTK AR+S+ +A P T R+S G +K R RPGT ALREI
Sbjct: 1 ARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALREI 51
Query: 62 RRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAML 121
RR+QKS +LLI ++ F R VR I D+ R+ A++ALQEA+E +LV LF D L
Sbjct: 52 RRYQKSTELLIRKLPFQRLVREIAQDFXT-DL-RFQSSAVMALQEASEAYLVALFEDTNL 109
Query: 122 CAIHAKRVTLMKKDFELARRLGGK 145
AIHAKRVT+M KD +LARR+ G+
Sbjct: 110 AAIHAKRVTIMPKDIQLARRIRGE 133
>pdb|1AOI|A Chain A, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
pdb|1AOI|E Chain E, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
Length = 116
Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/100 (56%), Positives = 71/100 (71%), Gaps = 2/100 (2%)
Query: 46 RKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQ 105
+K R RPGT ALREIRR+QKS +LLI ++ F R VR I D+ R+ A++ALQ
Sbjct: 17 KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQ 74
Query: 106 EAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRLGGK 145
EA+E +LV LF D LCAIHAKRVT+M KD +LARR+ G+
Sbjct: 75 EASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 114
>pdb|3KWQ|A Chain A, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|3KWQ|E Chain E, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
Length = 98
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 69/97 (71%), Gaps = 2/97 (2%)
Query: 49 QRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAA 108
R RPGT ALREIRR+Q+S +LLI ++ F R VR I D+ R+ A++ALQEA+
Sbjct: 2 HRYRPGTVALREIRRYQESTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQEAS 59
Query: 109 EDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRLGGK 145
E +LV LF D LCAIHAKRVT+M KD +LARR+ G+
Sbjct: 60 EAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 96
>pdb|1HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein, Alpha
Carbons Only
Length = 93
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/93 (58%), Positives = 67/93 (72%), Gaps = 2/93 (2%)
Query: 53 PGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFL 112
PGT ALREIRR+QKS +LLI ++ F R VR I D+ R+ A++ALQEA+E +L
Sbjct: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQEASEAYL 58
Query: 113 VNLFGDAMLCAIHAKRVTLMKKDFELARRLGGK 145
V LF D LCAIHAKRVT+M KD ELARR+ G+
Sbjct: 59 VGLFEDTNLCAIHAKRVTIMPKDIELARRIRGE 91
>pdb|1ID3|A Chain A, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
pdb|1ID3|E Chain E, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
Length = 135
Score = 96.7 bits (239), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 87/149 (58%), Gaps = 21/149 (14%)
Query: 2 ARTKHMARRSS-----RLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTK 56
ARTK AR+S+ R Q A KA S+P T +K R +PGT
Sbjct: 1 ARTKQTARKSTGGKAPRKQLASKAARK-SAPSTG-------------GVKKPHRYKPGTV 46
Query: 57 ALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLF 116
ALREIRRFQKS +LLI ++ F R VR I D+ R+ A+ ALQE+ E +LV+LF
Sbjct: 47 ALREIRRFQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAIGALQESVEAYLVSLF 104
Query: 117 GDAMLCAIHAKRVTLMKKDFELARRLGGK 145
D L AIHAKRVT+ KK+ +LARRL G+
Sbjct: 105 EDTNLAAIHAKRVTIQKKEIKLARRLRGE 133
>pdb|2YFV|A Chain A, The Heterotrimeric Complex Of Kluyveromyces Lactis Scm3,
Cse4 And H4
Length = 100
Score = 85.9 bits (211), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 63/94 (67%), Gaps = 1/94 (1%)
Query: 50 RLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYR-VAPPDVNRWTPEALIALQEAA 108
R +P AL EIR++Q+S DLLI RM F R V+ +T + + RW A++ALQEA+
Sbjct: 6 RYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEAS 65
Query: 109 EDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRL 142
E +LV L L A+HAKR+T+M+KD +LARR+
Sbjct: 66 EAYLVGLLEHTNLLALHAKRITIMRKDMQLARRI 99
>pdb|4H9P|A Chain A, Complex Structure 3 Of DaxxH3.3(SUB5,G90A)H4
pdb|4H9R|A Chain A, Complex Structure 5 Of Daxx(E225a)H3.3(SUB5,G90A)H4
Length = 135
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 85/144 (59%), Gaps = 11/144 (7%)
Query: 2 ARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61
ARTK AR+S+ +A P T R+S G +K R RPGT ALREI
Sbjct: 1 ARTKQTARKSTGGKA------PRKQLATKAARKSAPSTG---GVKKPHRYRPGTVALREI 51
Query: 62 RRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAML 121
RR+QKS +LLI ++ F R VR I D+ R+ A+ ALQEAAE FLV LF D L
Sbjct: 52 RRYQKSTELLIRKLPFQRLVREIAQDFKT-DL-RFQSAAIAALQEAAEAFLVALFEDTNL 109
Query: 122 CAIHAKRVTLMKKDFELARRLGGK 145
C IHAKRVT+ KD +LARR+ G+
Sbjct: 110 CTIHAKRVTIFPKDIQLARRIRGE 133
>pdb|2YFW|A Chain A, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|C Chain C, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|E Chain E, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|G Chain G, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
Length = 92
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Query: 57 ALREIRRFQKSVDLLIPRMSFIREVRTITYRVA-PPDVNRWTPEALIALQEAAEDFLVNL 115
AL EIR++Q+S DLLI RM F R V+ +T + + RW A++ALQEA+E +LV L
Sbjct: 1 ALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGL 60
Query: 116 FGDAMLCAIHAKRVTLMKKDFELARRLGGK 145
L A+HAKR+T+M+KD +LARR+ G+
Sbjct: 61 LEHTNLLALHAKRITIMRKDMQLARRIRGQ 90
>pdb|3AN2|A Chain A, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AN2|E Chain E, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
Length = 143
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 56/87 (64%)
Query: 58 LREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFG 117
L+EIR+ QKS LLI ++ F R R I + W +AL+ALQEAAE FLV+LF
Sbjct: 51 LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFE 110
Query: 118 DAMLCAIHAKRVTLMKKDFELARRLGG 144
DA L +HA RVTL KD +LARR+ G
Sbjct: 111 DAYLLTLHAGRVTLFPKDVQLARRIRG 137
>pdb|3R45|A Chain A, Structure Of A Cenp-A-Histone H4 Heterodimer In Complex
With Chaperone Hjurp
Length = 156
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 56/87 (64%)
Query: 58 LREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFG 117
L+EIR+ QKS LLI ++ F R R I + W +AL+ALQEAAE FLV+LF
Sbjct: 64 LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFE 123
Query: 118 DAMLCAIHAKRVTLMKKDFELARRLGG 144
DA L +HA RVTL KD +LARR+ G
Sbjct: 124 DAYLLTLHAGRVTLFPKDVQLARRIRG 150
>pdb|3NQU|A Chain A, Crystal Structure Of Partially Trypsinized (Cenp-AH4)2
HETEROTETRAMER
Length = 140
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 56/87 (64%)
Query: 58 LREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFG 117
L+EIR+ QKS LLI ++ F R R I + W +AL+ALQEAAE FLV+LF
Sbjct: 48 LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFE 107
Query: 118 DAMLCAIHAKRVTLMKKDFELARRLGG 144
DA L +HA RVTL KD +LARR+ G
Sbjct: 108 DAYLLTLHAGRVTLFPKDVQLARRIRG 134
>pdb|2L5A|A Chain A, Structural Basis For Recognition Of Centromere Specific
Histone H3 Variant By Nonhistone Scm3
Length = 235
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 70 LLIPRMSFIREVRTITYRVAPPDVN-RWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKR 128
LLI ++ F R V+ +T D + RW A++ALQEA+E +LV L L A+HAKR
Sbjct: 10 LLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKR 69
Query: 129 VTLMKKDFELARRLGGK 145
+T+MKKD +LARR+ G+
Sbjct: 70 ITIMKKDMQLARRIRGQ 86
>pdb|4EO5|B Chain B, Yeast Asf1 Bound To H3H4G94P MUTANT
Length = 76
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 71 LIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVT 130
LI ++ F R VR I D+ R+ A++ALQEA+E +LV LF D LCAIHAKRVT
Sbjct: 2 LIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVT 59
Query: 131 LMKKDFELARRLGGK 145
+M KD +LARR+ G+
Sbjct: 60 IMPKDIQLARRIRGE 74
>pdb|3NQJ|A Chain A, Crystal Structure Of (Cenp-AH4)2 HETEROTETRAMER
Length = 82
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 47/75 (62%)
Query: 70 LLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRV 129
LLI ++ F R R I + W +AL+ALQEAAE FLV+LF DA L +HA RV
Sbjct: 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRV 61
Query: 130 TLMKKDFELARRLGG 144
TL KD +LARR+ G
Sbjct: 62 TLFPKDVQLARRIRG 76
>pdb|2HUE|B Chain B, Structure Of The H3-h4 Chaperone Asf1 Bound To Histones H3
And H4
Length = 77
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 71 LIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVT 130
LI ++ F R VR I D+ R+ A++ALQEA+E +LV LF D LCAIHAKRVT
Sbjct: 3 LIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVT 60
Query: 131 LMKKDFELARRLGGK 145
+M KD +LARR+ G+
Sbjct: 61 IMPKDIQLARRIRGE 75
>pdb|2LY8|A Chain A, The Budding Yeast Chaperone Scm3 Recognizes The Partially
Unfolded Dimer Of The Centromere-specific Cse4/h4
Histone Variant
Length = 121
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 71 LIPRMSFIREVRTITYRVAPPDVN-RWTPEALIALQEAAEDFLVNLFGDAMLCAIH 125
LI ++ F R V+ +T D + RW A++ALQEA+E +LV L L A+H
Sbjct: 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALH 56
>pdb|2A3Q|A Chain A, X-Ray Structure Of Protein From Mus Musculus Mm.29898
pdb|2A3Q|B Chain B, X-Ray Structure Of Protein From Mus Musculus Mm.29898
pdb|2Q4P|A Chain A, Ensemble Refinement Of The Crystal Structure Of Protein
From Mus Musculus Mm.29898
pdb|2Q4P|B Chain B, Ensemble Refinement Of The Crystal Structure Of Protein
From Mus Musculus Mm.29898
Length = 170
Score = 30.0 bits (66), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 42 PTAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITY--RVAPPDVNRWTPE 99
PT + R RL A R+ +F + +LL+ + + E+ + P W P+
Sbjct: 29 PTLEDIR-RLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKSDTEPGPQAWPPK 87
Query: 100 ALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKD 135
ALQE D L+ L A C + + + K D
Sbjct: 88 ERAALQEELSDVLIYLVALAARCHVDLPQAVISKXD 123
>pdb|1B67|A Chain A, Crystal Structure Of The Histone Hmfa From Methanothermus
Fervidus
pdb|1B67|B Chain B, Crystal Structure Of The Histone Hmfa From Methanothermus
Fervidus
Length = 68
Score = 29.6 bits (65), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 94 NRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRL 142
R + +A IAL + E+ + +A+ A HA R T+ +D ELAR++
Sbjct: 18 ERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66
>pdb|1HTA|A Chain A, Crystal Structure Of The Histone Hmfa From Methanothermus
Fervidus
Length = 69
Score = 29.6 bits (65), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 94 NRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRL 142
R + +A IAL + E+ + +A+ A HA R T+ +D ELAR++
Sbjct: 19 ERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 67
>pdb|2OIE|A Chain A, Crystal Structure Of Rs21-C6 Core Segment Rscut
pdb|2OIE|B Chain B, Crystal Structure Of Rs21-C6 Core Segment Rscut
pdb|2OIE|C Chain C, Crystal Structure Of Rs21-C6 Core Segment Rscut
pdb|2OIE|D Chain D, Crystal Structure Of Rs21-C6 Core Segment Rscut
pdb|2OIG|A Chain A, Crystal Structure Of Rs21-C6 Core Segment And Dm5ctp
Complex
pdb|2OIG|B Chain B, Crystal Structure Of Rs21-C6 Core Segment And Dm5ctp
Complex
pdb|2OIG|C Chain C, Crystal Structure Of Rs21-C6 Core Segment And Dm5ctp
Complex
pdb|2OIG|D Chain D, Crystal Structure Of Rs21-C6 Core Segment And Dm5ctp
Complex
Length = 111
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 42 PTAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAP--PDVNRWTPE 99
PT + R RL A R+ +F + +LL+ + + E+ + + P W P+
Sbjct: 14 PTLEDIR-RLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKSDTEPGPQAWPPK 72
Query: 100 ALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKD 135
ALQE D L+ L A C + + + K D
Sbjct: 73 ERAALQEELSDVLIYLVALAARCHVDLPQAVISKMD 108
>pdb|2FP4|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gtp
pdb|2FPG|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gdp
pdb|2FPI|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol
pdb|2FPP|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol With Chloride Ions
Length = 395
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 109 EDFLVNLFGDAMLCAIHAKRVTLMKKDFEL 138
E LVN+FG + CAI A +T ++ EL
Sbjct: 319 EAILVNIFGGIVNCAIIANGITKACRELEL 348
>pdb|3CH0|A Chain A, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase (Yp_677622.1) From Cytophaga
Hutchinsonii Atcc 33406 At 1.50 A Resolution
Length = 272
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 123 AIHAKRVTLM-KKDFELARRLGGKGQPW 149
A+++ VTL+ KKD + A +LG + PW
Sbjct: 215 AVYSPDVTLVSKKDIDAAHKLGXRVIPW 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,042,089
Number of Sequences: 62578
Number of extensions: 136025
Number of successful extensions: 401
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 314
Number of HSP's gapped (non-prelim): 57
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)