Query 031980
Match_columns 149
No_of_seqs 158 out of 587
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 12:41:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzy_C Histone H3; histone-fol 100.0 2.1E-63 7.1E-68 380.7 7.8 135 1-146 1-135 (136)
2 2yfv_A Histone H3-like centrom 100.0 8.6E-53 3E-57 307.5 7.2 98 46-143 2-100 (100)
3 3r45_A Histone H3-like centrom 100.0 1.5E-51 5.1E-56 320.6 6.8 113 31-145 39-151 (156)
4 3nqu_A Histone H3-like centrom 100.0 2.8E-51 9.5E-56 314.7 7.9 113 32-146 24-136 (140)
5 3nqj_A Histone H3-like centrom 100.0 9.2E-40 3.1E-44 231.2 7.3 77 70-146 2-78 (82)
6 2hue_B Histone H3; mini beta s 100.0 2.7E-39 9.2E-44 226.5 8.3 76 69-146 1-76 (77)
7 2l5a_A Histone H3-like centrom 100.0 7.3E-36 2.5E-40 245.1 8.6 80 67-146 7-87 (235)
8 2ly8_A Budding yeast chaperone 100.0 1E-28 3.5E-33 185.5 8.0 75 71-145 1-114 (121)
9 1b67_A Protein (histone HMFA); 99.8 2.4E-21 8.1E-26 130.5 6.2 63 72-141 3-65 (68)
10 1ku5_A HPHA, archaeal histon; 99.7 2.1E-18 7.1E-23 117.0 6.0 64 71-141 6-69 (70)
11 1n1j_A NF-YB; histone-like PAI 99.7 1.2E-16 4.2E-21 113.6 6.6 71 66-141 3-73 (93)
12 1tzy_D Histone H4-VI; histone- 99.1 7.6E-11 2.6E-15 85.4 5.6 72 67-145 25-96 (103)
13 2yfw_B Histone H4, H4; cell cy 99.1 7.2E-11 2.5E-15 85.6 5.4 72 67-145 25-96 (103)
14 1id3_B Histone H4; nucleosome 99.1 9.4E-11 3.2E-15 85.1 5.9 72 67-145 24-95 (102)
15 2hue_C Histone H4; mini beta s 99.1 9.8E-11 3.4E-15 82.0 4.5 72 67-145 6-77 (84)
16 3b0c_T CENP-T, centromere prot 99.0 8.5E-10 2.9E-14 81.1 7.6 70 69-145 5-74 (111)
17 1f1e_A Histone fold protein; a 99.0 5.5E-10 1.9E-14 86.6 6.6 71 65-142 76-146 (154)
18 1taf_B TFIID TBP associated fa 98.9 2.9E-09 9.8E-14 72.9 6.0 64 71-141 6-69 (70)
19 3b0c_W CENP-W, centromere prot 98.9 2.8E-09 9.7E-14 73.1 5.8 66 71-142 4-69 (76)
20 3v9r_A MHF1, uncharacterized p 98.9 4.5E-09 1.5E-13 75.1 6.7 68 74-141 11-78 (90)
21 1taf_A TFIID TBP associated fa 98.9 4.7E-09 1.6E-13 71.4 6.4 50 94-143 17-66 (68)
22 1f1e_A Histone fold protein; a 98.9 3.5E-09 1.2E-13 82.1 6.2 66 72-143 5-70 (154)
23 4dra_A Centromere protein S; D 98.8 5.3E-09 1.8E-13 77.5 6.2 62 76-141 32-93 (113)
24 3b0b_B CENP-S, centromere prot 98.8 6.6E-09 2.3E-13 76.3 5.9 62 76-141 24-85 (107)
25 3vh5_A CENP-S; histone fold, c 98.7 3E-08 1E-12 75.9 6.5 61 77-141 25-85 (140)
26 2byk_B Chrac-14; nucleosome sl 98.7 4.9E-08 1.7E-12 73.3 7.2 72 68-144 6-77 (128)
27 1jfi_B DR1 protein, transcript 98.6 6E-08 2E-12 76.8 7.3 71 65-141 9-79 (179)
28 2r10_A Chromatin structure-rem 98.6 6.1E-09 2.1E-13 89.1 -0.2 50 3-61 3-52 (361)
29 1n1j_B NF-YC; histone-like PAI 98.5 4E-07 1.4E-11 65.0 6.8 80 58-141 4-83 (97)
30 4g92_C HAPE; transcription fac 98.3 2.1E-06 7.1E-11 63.5 6.9 70 69-141 36-105 (119)
31 1jfi_A Transcription regulator 98.0 5.8E-06 2E-10 59.1 5.3 65 74-141 11-75 (98)
32 2f8n_G Core histone macro-H2A. 98.0 1.2E-05 4E-10 59.8 6.2 67 69-141 20-86 (120)
33 2nqb_C Histone H2A; nucleosome 98.0 1.1E-05 3.9E-10 60.1 6.0 67 69-141 21-87 (123)
34 1tzy_A Histone H2A-IV; histone 98.0 1.3E-05 4.5E-10 60.2 6.1 67 69-141 23-89 (129)
35 2f8n_K Histone H2A type 1; nuc 97.9 1.6E-05 5.5E-10 61.2 5.5 68 68-141 41-108 (149)
36 1id3_C Histone H2A.1; nucleoso 97.8 1.6E-05 5.4E-10 59.9 4.8 67 69-141 23-89 (131)
37 1f66_C Histone H2A.Z; nucleoso 97.8 2.3E-05 7.9E-10 58.8 5.3 69 69-142 25-93 (128)
38 2l5a_A Histone H3-like centrom 97.8 1.9E-05 6.4E-10 64.8 5.1 53 92-144 175-227 (235)
39 1h3o_B Transcription initiatio 97.7 9.5E-05 3.3E-09 51.1 6.8 65 71-141 5-69 (76)
40 2jss_A Chimera of histone H2B. 97.7 6.9E-05 2.3E-09 59.2 5.9 68 69-141 103-170 (192)
41 2nqb_D Histone H2B; nucleosome 97.5 0.00028 9.5E-09 52.9 6.9 62 75-142 37-98 (123)
42 2x4w_B Histone H3.2; transcrip 97.5 3.1E-05 1.1E-09 42.4 1.3 15 43-57 12-26 (26)
43 2byk_A Chrac-16; nucleosome sl 97.4 0.00021 7.1E-09 54.3 5.7 66 73-141 18-84 (140)
44 1tzy_B Histone H2B; histone-fo 97.4 0.00047 1.6E-08 51.8 7.0 61 76-142 41-101 (126)
45 2jss_A Chimera of histone H2B. 96.7 0.0051 1.8E-07 48.4 7.4 65 76-142 4-68 (192)
46 3a1b_A DNA (cytosine-5)-methyl 93.6 0.0086 2.9E-07 46.4 -0.9 20 2-21 1-20 (159)
47 4dra_E Centromere protein X; D 87.9 2.4 8.3E-05 29.3 7.2 59 79-137 16-74 (84)
48 3b0b_C CENP-X, centromere prot 86.8 2.9 9.8E-05 28.7 6.9 62 72-137 9-70 (81)
49 1h3o_A Transcription initiatio 70.9 6.5 0.00022 26.7 4.4 59 71-134 2-60 (75)
50 3avr_B Histone H3; cupin super 70.1 2 6.8E-05 22.8 1.4 9 43-51 17-25 (26)
51 3uk6_A RUVB-like 2; hexameric 60.1 15 0.00052 29.1 5.4 50 93-142 276-329 (368)
52 2ly8_A Budding yeast chaperone 58.0 7.9 0.00027 28.4 3.1 33 91-123 60-92 (121)
53 1r4v_A Hypothetical protein AQ 55.9 18 0.00061 28.1 4.9 72 63-141 16-89 (171)
54 2k3y_A Chromatin modification- 46.1 7.9 0.00027 29.0 1.5 10 43-52 127-136 (136)
55 3ksy_A SOS-1, SON of sevenless 45.6 53 0.0018 31.2 7.4 81 55-142 84-168 (1049)
56 1wwi_A Hypothetical protein TT 43.4 40 0.0014 25.6 5.1 63 71-140 2-64 (148)
57 1g8p_A Magnesium-chelatase 38 42.6 50 0.0017 25.7 5.8 49 94-142 266-321 (350)
58 1rk8_C PYM protein, within the 42.0 6.6 0.00023 25.6 0.4 27 43-69 21-47 (58)
59 3kw6_A 26S protease regulatory 40.9 14 0.00047 23.6 1.9 32 110-141 40-71 (78)
60 3k1j_A LON protease, ATP-depen 38.0 96 0.0033 27.1 7.4 49 94-142 313-374 (604)
61 3qb5_K Translin-associated pro 37.5 26 0.0009 28.7 3.5 39 78-116 98-136 (290)
62 3v9r_B MHF2, uncharacterized p 32.9 57 0.002 22.7 4.1 58 72-137 2-70 (88)
63 3vlf_B 26S protease regulatory 29.0 22 0.00077 23.4 1.5 32 110-141 38-69 (88)
64 3szr_A Interferon-induced GTP- 26.8 1E+02 0.0036 27.1 5.8 52 58-118 405-461 (608)
65 3bos_A Putative DNA replicatio 26.6 66 0.0023 23.1 3.8 47 93-140 191-240 (242)
66 2dsy_A Hypothetical protein TT 25.0 68 0.0023 21.3 3.3 23 98-120 47-69 (87)
67 1njg_A DNA polymerase III subu 24.5 54 0.0019 23.1 2.9 46 93-139 202-247 (250)
68 2dzn_B 26S protease regulatory 23.2 84 0.0029 20.1 3.5 32 110-141 35-66 (82)
69 2chg_A Replication factor C sm 21.8 54 0.0019 22.9 2.5 46 94-141 179-224 (226)
70 3aji_B S6C, proteasome (prosom 21.0 98 0.0033 19.6 3.4 32 110-141 38-69 (83)
No 1
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=100.00 E-value=2.1e-63 Score=380.69 Aligned_cols=135 Identities=49% Similarity=0.689 Sum_probs=91.7
Q ss_pred CCCcccccccccCcccccccCCCCCCCCcchhhhhhcCCCCCCccCCcccCCCCchhhHHHHhhhhcccccCCcchHHHH
Q 031980 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIRE 80 (149)
Q Consensus 1 MartK~~a~k~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kk~~r~rpgt~alrEIr~yQkst~lLIpk~PF~RL 80 (149)
||||||+|+||+||++|++|++ +|+++++.|++ ++++++||||||++||+|||+||+||+|||||+||+||
T Consensus 1 MARtk~tarkstggkaprk~l~--------~k~a~k~~p~~-~~~kk~~r~rpgt~alrEIr~yQkst~lLIpk~PF~RL 71 (136)
T 1tzy_C 1 MARTKQTARKSTGGKAPRKQLA--------TKAARKSAPAT-GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRL 71 (136)
T ss_dssp --------------------------------------------------CCHHHHHHHHHHHHHHCCSCCSCHHHHHHH
T ss_pred CCCCccccccCCCCCCCCcccc--------ccccccCCCCC-CCCCCCCCCCCchhHHHHHHHhhcchhhhhccchHHHH
Confidence 9999999999999999999987 45545444443 78999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHHHccCC
Q 031980 81 VRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRLGGKG 146 (149)
Q Consensus 81 VrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~rirg~~ 146 (149)
||||+++ +..++|||++|++|||||+|+|||+||||+|+||+||||||||++|||||++|||+.
T Consensus 72 VREI~~~--~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg~~ 135 (136)
T 1tzy_C 72 VREIAQD--FKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135 (136)
T ss_dssp HHHHHHH--HCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCC
T ss_pred HHHHHHH--hhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhCcC
Confidence 9999999 456899999999999999999999999999999999999999999999999999984
No 2
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=100.00 E-value=8.6e-53 Score=307.52 Aligned_cols=98 Identities=46% Similarity=0.748 Sum_probs=65.9
Q ss_pred CCcccCCCCchhhHHHHhhhhcccccCCcchHHHHHHHHhhhcCC-CCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031980 46 RKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAP-PDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAI 124 (149)
Q Consensus 46 kk~~r~rpgt~alrEIr~yQkst~lLIpk~PF~RLVrEI~~~~~~-~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~ 124 (149)
+++|||||||+||+|||+||+||+|||||+||+||||||++++.. ..++|||++|++|||||+|+|||+||||+|+||+
T Consensus 2 ~~~~r~rpgt~alrEIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~ 81 (100)
T 2yfv_A 2 ARGTRYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLAL 81 (100)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcchHHHHHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999432 1389999999999999999999999999999999
Q ss_pred hcCccccccccHHHHHHHc
Q 031980 125 HAKRVTLMKKDFELARRLG 143 (149)
Q Consensus 125 HAkRvTi~~kDiqLa~rir 143 (149)
||||||||++|||||++||
T Consensus 82 HAkRvTi~~kDiqLa~rir 100 (100)
T 2yfv_A 82 HAKRITIMRKDMQLARRIR 100 (100)
T ss_dssp HTTCSEECHHHHHHHHHCC
T ss_pred HcCCccCCHHHHHHHHHhC
Confidence 9999999999999999986
No 3
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.5e-51 Score=320.56 Aligned_cols=113 Identities=44% Similarity=0.630 Sum_probs=73.9
Q ss_pred hhhhhhcCCCCCCccCCcccCCCCchhhHHHHhhhhcccccCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHH
Q 031980 31 RQRRSEAGEGTPTAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAED 110 (149)
Q Consensus 31 ~k~~~~~~~~~~~~~kk~~r~rpgt~alrEIr~yQkst~lLIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~ 110 (149)
+++++++.|++.+..++++||+||+ |+|||+||+||+|||||+||+||||||+++|....++|||++||+|||||+|+
T Consensus 39 ~~aa~ksap~~g~~~~~~~r~rpg~--LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEa 116 (156)
T 3r45_A 39 TPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEA 116 (156)
T ss_dssp --------------------------------------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCch--HHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHH
Confidence 4444555555533445558999998 99999999999999999999999999999954446899999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCccccccccHHHHHHHccC
Q 031980 111 FLVNLFGDAMLCAIHAKRVTLMKKDFELARRLGGK 145 (149)
Q Consensus 111 yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~rirg~ 145 (149)
|||+||||+|+||+||||||||++|||||++|||+
T Consensus 117 yLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg~ 151 (156)
T 3r45_A 117 FLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 151 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccccHHHHHHHHHHccc
Confidence 99999999999999999999999999999999997
No 4
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=100.00 E-value=2.8e-51 Score=314.70 Aligned_cols=113 Identities=44% Similarity=0.628 Sum_probs=73.4
Q ss_pred hhhhhcCCCCCCccCCcccCCCCchhhHHHHhhhhcccccCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHH
Q 031980 32 QRRSEAGEGTPTAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDF 111 (149)
Q Consensus 32 k~~~~~~~~~~~~~kk~~r~rpgt~alrEIr~yQkst~lLIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~y 111 (149)
++++++.|++.+..++++||+||+ |+|||+||+||+|||||+||+||||||+++|....++|||++||+|||||+|+|
T Consensus 24 ~aa~~~~~~~g~~~~~~~r~rpg~--LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEay 101 (140)
T 3nqu_A 24 PGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAF 101 (140)
T ss_dssp -------------------------------------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCcc--HHHHHHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHH
Confidence 334444555423445556999998 999999999999999999999999999999654568999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCccccccccHHHHHHHccCC
Q 031980 112 LVNLFGDAMLCAIHAKRVTLMKKDFELARRLGGKG 146 (149)
Q Consensus 112 Lv~Lfeda~lcA~HAkRvTi~~kDiqLa~rirg~~ 146 (149)
||+||||+|+||+||||||||++|||||++|||+.
T Consensus 102 Lv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~~ 136 (140)
T 3nqu_A 102 LVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 136 (140)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHcCcccccHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999974
No 5
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.2e-40 Score=231.22 Aligned_cols=77 Identities=49% Similarity=0.702 Sum_probs=72.0
Q ss_pred ccCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHHHccCC
Q 031980 70 LLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRLGGKG 146 (149)
Q Consensus 70 lLIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~rirg~~ 146 (149)
|||||+||+||||||++++....++|||++|+.|||||+|+|||+||||+|+||+||||||||++|||||++|||+.
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~~ 78 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 78 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcccc
Confidence 79999999999999999954446899999999999999999999999999999999999999999999999999985
No 6
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=100.00 E-value=2.7e-39 Score=226.45 Aligned_cols=76 Identities=50% Similarity=0.712 Sum_probs=72.7
Q ss_pred cccCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHHHccCC
Q 031980 69 DLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRLGGKG 146 (149)
Q Consensus 69 ~lLIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~rirg~~ 146 (149)
+|||||+||+||||||+++ +++++|||++|+.|||||+|+|||+||||+|+||+||||||||++|||||++|||+.
T Consensus 1 ~lli~k~PF~RLVRei~~~--~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg~~ 76 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQD--FKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 76 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHT--TCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCC
T ss_pred CCccccchHHHHHHHHHHH--cCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhCcC
Confidence 4899999999999999999 567899999999999999999999999999999999999999999999999999984
No 7
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-36 Score=245.06 Aligned_cols=80 Identities=44% Similarity=0.675 Sum_probs=71.5
Q ss_pred cccccCCcchHHHHHHHHhhhcCC-CCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHHHccC
Q 031980 67 SVDLLIPRMSFIREVRTITYRVAP-PDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRLGGK 145 (149)
Q Consensus 67 st~lLIpk~PF~RLVrEI~~~~~~-~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~rirg~ 145 (149)
...|||||+||+||||||++++.. ..++|||++||.|||||+|+|||+||||+|+||+||||||||++|||||++|||+
T Consensus 7 ~~~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~ 86 (235)
T 2l5a_A 7 HKKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQ 86 (235)
T ss_dssp ----CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCS
T ss_pred cccccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhc
Confidence 346899999999999999999432 1389999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 031980 146 G 146 (149)
Q Consensus 146 ~ 146 (149)
.
T Consensus 87 ~ 87 (235)
T 2l5a_A 87 F 87 (235)
T ss_dssp C
T ss_pred c
Confidence 5
No 8
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=99.95 E-value=1e-28 Score=185.53 Aligned_cols=75 Identities=36% Similarity=0.535 Sum_probs=68.4
Q ss_pred cCCcchHHHHHHHHhhhcCC-CCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----------------------
Q 031980 71 LIPRMSFIREVRTITYRVAP-PDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHA----------------------- 126 (149)
Q Consensus 71 LIpk~PF~RLVrEI~~~~~~-~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HA----------------------- 126 (149)
||||+||+||||||++++.. ..++|||++||.|||||+|+|||+||||+|+||+||
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~iy~e~r~vl~~~ 80 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKSF 80 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHHHHHHHHHHHHHH
Confidence 79999999999999999543 238999999999999999999999999999999864
Q ss_pred ---------------CccccccccHHHHHHHccC
Q 031980 127 ---------------KRVTLMKKDFELARRLGGK 145 (149)
Q Consensus 127 ---------------kRvTi~~kDiqLa~rirg~ 145 (149)
+|.||+..||.+|.+-.|.
T Consensus 81 l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~ 114 (121)
T 2ly8_A 81 LESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 114 (121)
T ss_dssp HHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCC
Confidence 8899999999999988775
No 9
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.84 E-value=2.4e-21 Score=130.49 Aligned_cols=63 Identities=30% Similarity=0.386 Sum_probs=60.2
Q ss_pred CCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHH
Q 031980 72 IPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARR 141 (149)
Q Consensus 72 Ipk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~r 141 (149)
||++||+||+|++ + +.||+++|+.+||+++|.|++.||+|||+||.|+||+||+++||++|.+
T Consensus 3 lP~a~v~Ri~k~~--~-----~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~ 65 (68)
T 1b67_A 3 LPIAPIGRIIKNA--G-----AERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARK 65 (68)
T ss_dssp SCHHHHHHHHHHT--T-----CSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGG
T ss_pred CCccHHHHHHhcC--C-----cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 7999999999999 2 4899999999999999999999999999999999999999999999975
No 10
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.74 E-value=2.1e-18 Score=117.01 Aligned_cols=64 Identities=27% Similarity=0.308 Sum_probs=60.3
Q ss_pred cCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHH
Q 031980 71 LIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARR 141 (149)
Q Consensus 71 LIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~r 141 (149)
.||++||.||+|+++ ..||+++|+++|||++|.|+.++++|++.||.||||+||+++||+||.+
T Consensus 6 ~lp~a~v~Rl~r~~g-------~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKAG-------AERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHTT-------CSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHcC-------cceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 489999999999874 3799999999999999999999999999999999999999999999974
No 11
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.66 E-value=1.2e-16 Score=113.57 Aligned_cols=71 Identities=18% Similarity=0.253 Sum_probs=63.8
Q ss_pred hcccccCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHH
Q 031980 66 KSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARR 141 (149)
Q Consensus 66 kst~lLIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~r 141 (149)
++++++||++++.||+|++..+ +.||+.+|+.+||+++|.|+..|+++||.||.|++|+||+++||.+|.+
T Consensus 3 ~~~d~~LP~a~i~ri~K~~~~~-----~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 3 REQDIYLPIANVARIMKNAIPQ-----TGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp ----CCCCHHHHHHHHHHTSCT-----TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CcccccCChhHHHHHHHHhCCc-----cceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 4678999999999999999654 5799999999999999999999999999999999999999999999986
No 12
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.11 E-value=7.6e-11 Score=85.35 Aligned_cols=72 Identities=24% Similarity=0.160 Sum_probs=64.3
Q ss_pred cccccCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHHHccC
Q 031980 67 SVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRLGGK 145 (149)
Q Consensus 67 st~lLIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~rirg~ 145 (149)
+..--||+.+..||.+.... .|++.+|.++|+++.|.|+.++.+||..+|-|++|.||+++||.+|.+-.|+
T Consensus 25 ~~~~gip~~~I~Rlar~~G~-------~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~ 96 (103)
T 1tzy_D 25 DNIQGITKPAIRRLARRGGV-------KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 96 (103)
T ss_dssp CGGGGSCHHHHHHHHHHTTC-------CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred hhcccCCHHHHHHHHHHcCc-------cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCC
Confidence 33344999999999987654 5999999999999999999999999999999999999999999999986654
No 13
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.11 E-value=7.2e-11 Score=85.56 Aligned_cols=72 Identities=22% Similarity=0.182 Sum_probs=62.0
Q ss_pred cccccCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHHHccC
Q 031980 67 SVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRLGGK 145 (149)
Q Consensus 67 st~lLIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~rirg~ 145 (149)
+..--||+.+..||.+.... .|++.+|.++|+++.|.|+.++.+||..+|-|++|.||+++||.+|.+-.|+
T Consensus 25 ~~~~gip~~~I~Rlar~~G~-------~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~ 96 (103)
T 2yfw_B 25 DNIQGITKPAIRRLARRGGV-------KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGR 96 (103)
T ss_dssp -----CCHHHHHHHHHHTTC-------CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred hhhccCCHHHHHHHHHHcCc-------cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 33334999999999987654 5999999999999999999999999999999999999999999999987664
No 14
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.11 E-value=9.4e-11 Score=85.09 Aligned_cols=72 Identities=21% Similarity=0.174 Sum_probs=64.8
Q ss_pred cccccCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHHHccC
Q 031980 67 SVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRLGGK 145 (149)
Q Consensus 67 st~lLIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~rirg~ 145 (149)
.+.--||+.+..||.+..+. .|++.+|.++|+++.|.|+.++.+||+.++-|++|.||+++||.+|.+-.|+
T Consensus 24 ~~i~~ip~~~I~Rlar~~Gv-------~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~ 95 (102)
T 1id3_B 24 DNIQGITKPAIRRLARRGGV-------KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 95 (102)
T ss_dssp CCGGGSCHHHHHHHHHHTTC-------CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred hccCCCCHHHHHHHHHHcCc-------hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 33345999999999998754 6999999999999999999999999999999999999999999999987664
No 15
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.07 E-value=9.8e-11 Score=81.96 Aligned_cols=72 Identities=24% Similarity=0.160 Sum_probs=64.2
Q ss_pred cccccCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHHHccC
Q 031980 67 SVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRLGGK 145 (149)
Q Consensus 67 st~lLIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~rirg~ 145 (149)
.+.--||+.+..||.+..+. .|++.+|.++|++..|.|+..+.+||+.++-|++|.||+..||.+|.+-.|+
T Consensus 6 ~~~~~ip~~~I~Riar~~Gv-------~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~ 77 (84)
T 2hue_C 6 DNIQGITKPAIRRLARRGGV-------KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 77 (84)
T ss_dssp GGCCSSCHHHHHHHHHHTTC-------CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCE
T ss_pred ccCCCCCHHHHHHHHHHcCc-------hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 34445999999999987754 6999999999999999999999999999999999999999999999876553
No 16
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.01 E-value=8.5e-10 Score=81.10 Aligned_cols=70 Identities=20% Similarity=0.168 Sum_probs=60.5
Q ss_pred cccCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHHHccC
Q 031980 69 DLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRLGGK 145 (149)
Q Consensus 69 ~lLIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~rirg~ 145 (149)
++-||+....||.|..+. .|++.+|.++|++++|.|+..+..|++..|-||+|.||+++||.|+.+--|.
T Consensus 5 d~~lP~a~I~Ri~r~~g~-------~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~ 74 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHYVK-------TPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGL 74 (111)
T ss_dssp -----CHHHHHHHHHHHC-------SCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHCCC-------CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCC
Confidence 466899999999998854 6999999999999999999999999999999999999999999999876554
No 17
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.00 E-value=5.5e-10 Score=86.61 Aligned_cols=71 Identities=18% Similarity=0.048 Sum_probs=65.0
Q ss_pred hhcccccCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHHH
Q 031980 65 QKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRL 142 (149)
Q Consensus 65 Qkst~lLIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~ri 142 (149)
-.--++.||++|..||.|+.+. .|++++|.++|+++.|.|+..+.++|+..|.|++|.||+++||++|.+.
T Consensus 76 ~d~~~l~lP~a~V~Ri~k~~g~-------~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 76 EDYDGELFGRATVRRILKRAGI-------ERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp TTCCSCCCCHHHHHHHHHHTTC-------CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CccccccCCccHHHHHHHHcCC-------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 3345788999999999999833 6999999999999999999999999999999999999999999999764
No 18
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.89 E-value=2.9e-09 Score=72.88 Aligned_cols=64 Identities=23% Similarity=0.203 Sum_probs=59.7
Q ss_pred cCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHH
Q 031980 71 LIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARR 141 (149)
Q Consensus 71 LIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~r 141 (149)
.+|..|+.++.+.++. .+++.+|..+|-+-.|.++-++.++|..++.|+||.||+.+||.+|.+
T Consensus 6 ~lp~~~v~~iaes~Gi-------~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 6 SISAESMKVIAESIGV-------GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCHHHHHHHHHHTTC-------CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred cCCHHHHHHHHHHCCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 4788999999888876 489999999999999999999999999999999999999999999975
No 19
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.88 E-value=2.8e-09 Score=73.06 Aligned_cols=66 Identities=15% Similarity=0.108 Sum_probs=60.9
Q ss_pred cCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHHH
Q 031980 71 LIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRL 142 (149)
Q Consensus 71 LIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~ri 142 (149)
.+|+++..|+++++.- +.+++.+|.++|++++|.|+..|...|+..|.|.+|.||..+||+.|.+.
T Consensus 4 ~LP~A~V~rI~K~~~p------~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHKP------HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp CCCHHHHHHHHHHHCT------TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred cccccHHHHHHHHhCC------CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 5899999999998753 37999999999999999999999999999999999999999999998763
No 20
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.87 E-value=4.5e-09 Score=75.05 Aligned_cols=68 Identities=25% Similarity=0.171 Sum_probs=56.5
Q ss_pred cchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHH
Q 031980 74 RMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARR 141 (149)
Q Consensus 74 k~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~r 141 (149)
|+.+.--|-.|+++.....+..|+++++.+|-|.+|.|+..+.+|+...|.||||.||.++||.|+.|
T Consensus 11 Kaal~~~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~R 78 (90)
T 3v9r_A 11 KARLWIRVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLR 78 (90)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 34445555566665433344789999999999999999999999999999999999999999999964
No 21
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.86 E-value=4.7e-09 Score=71.41 Aligned_cols=50 Identities=24% Similarity=0.379 Sum_probs=48.1
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHHHc
Q 031980 94 NRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRLG 143 (149)
Q Consensus 94 ~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~rir 143 (149)
.+|++.++..|-|.+|.|..++++||..+|.||+|.||..+||+||...+
T Consensus 17 ~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 17 QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 59999999999999999999999999999999999999999999998765
No 22
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.85 E-value=3.5e-09 Score=82.05 Aligned_cols=66 Identities=14% Similarity=0.082 Sum_probs=60.6
Q ss_pred CCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHHHc
Q 031980 72 IPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRLG 143 (149)
Q Consensus 72 Ipk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~rir 143 (149)
||++|..||+|+..- ..|++.+|-++|+++.|.|+..+-.+|+..|.|++|.||+++||..+..-.
T Consensus 5 LP~a~V~Riik~~lg------~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~l 70 (154)
T 1f1e_A 5 LPKAAIERIFRQGIG------ERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVL 70 (154)
T ss_dssp CCHHHHHHHHHTTST------TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHH
T ss_pred CCccHHHHHHHhcCC------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhc
Confidence 799999999998843 279999999999999999999999999999999999999999999887543
No 23
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.83 E-value=5.3e-09 Score=77.54 Aligned_cols=62 Identities=21% Similarity=0.218 Sum_probs=56.2
Q ss_pred hHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHH
Q 031980 76 SFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARR 141 (149)
Q Consensus 76 PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~r 141 (149)
...|+|++.+.+ .+..++.+++.+|-|.+|.|+..+.+|+...|.||||.||.++||.|+.|
T Consensus 32 ~V~rIvke~gae----r~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~R 93 (113)
T 4dra_A 32 TVGCLCEEVALD----KEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLAR 93 (113)
T ss_dssp HHHHHHHHHHHH----HTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHH----cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 567888888876 13569999999999999999999999999999999999999999999965
No 24
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.80 E-value=6.6e-09 Score=76.27 Aligned_cols=62 Identities=21% Similarity=0.171 Sum_probs=56.0
Q ss_pred hHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHH
Q 031980 76 SFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARR 141 (149)
Q Consensus 76 PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~r 141 (149)
.+.|+|++.+.+ .+.|++++++.+|-|.++.|+..+..|+...|-||+|.||..+||.|+.|
T Consensus 24 ~V~rI~~~~g~~----~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~R 85 (107)
T 3b0b_B 24 TTGCLCQDVAED----KGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLAR 85 (107)
T ss_dssp HHHHHHHHHHHH----HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHhhh----cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHH
Confidence 467888888775 24699999999999999999999999999999999999999999999975
No 25
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.68 E-value=3e-08 Score=75.90 Aligned_cols=61 Identities=21% Similarity=0.176 Sum_probs=53.6
Q ss_pred HHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHH
Q 031980 77 FIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARR 141 (149)
Q Consensus 77 F~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~r 141 (149)
..++|.+.+.+ .+..|+.+++.+|-|.+|.|+..+..|+...|.||+|.||.++||.|+.|
T Consensus 25 VgkIvee~~~~----~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~R 85 (140)
T 3vh5_A 25 TGALAQDVAED----KGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLAR 85 (140)
T ss_dssp HHHHHHHHHHH----HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHHHh----cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 34566666554 25789999999999999999999999999999999999999999999975
No 26
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=98.67 E-value=4.9e-08 Score=73.27 Aligned_cols=72 Identities=19% Similarity=0.112 Sum_probs=61.3
Q ss_pred ccccCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHHHcc
Q 031980 68 VDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRLGG 144 (149)
Q Consensus 68 t~lLIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~rirg 144 (149)
-++.+|.++..|++++..-+ +.+++.+|..+|++++|.|+..|-..|+..|.|.+|.||..+||..|..--|
T Consensus 6 ~d~~LP~A~I~rImK~~~pd-----~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~ 77 (128)
T 2byk_B 6 EDLNLPNAVIGRLIKEALPE-----SASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELD 77 (128)
T ss_dssp -----CCSHHHHHHHHHSCT-----TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHhCcc-----cceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcC
Confidence 35789999999999988643 5799999999999999999999999999999999999999999998876433
No 27
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.64 E-value=6e-08 Score=76.81 Aligned_cols=71 Identities=15% Similarity=0.140 Sum_probs=63.8
Q ss_pred hhcccccCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHH
Q 031980 65 QKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARR 141 (149)
Q Consensus 65 Qkst~lLIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~r 141 (149)
....++.+|+++..||++++.. +.+++.+|.++|+++++.|+..|...||..+.|.+|.||.++||..|..
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp------~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~ 79 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLP------NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE 79 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHST------TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CchhhhhcCHHHHHHHHHHhCC------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 4556789999999999999863 4799999999999999999999999999999999999999999998875
No 28
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=98.57 E-value=6.1e-09 Score=89.10 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=12.7
Q ss_pred CcccccccccCcccccccCCCCCCCCcchhhhhhcCCCCCCccCCcccCCCCchhhHHH
Q 031980 3 RTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61 (149)
Q Consensus 3 rtK~~a~k~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kk~~r~rpgt~alrEI 61 (149)
||||+|+|||||++|+++++ .|+.++..+. +++++++|||+||++|+.|-
T Consensus 3 ~tk~tarkstggkaprk~~~--------~k~~rk~~~~-~~~~kkp~R~rPGt~a~~e~ 52 (361)
T 2r10_A 3 DPFTTARKSTGGKAPRKGGM--------VVKKRKLATE-AGGSDERPKYLPGKHPKNQE 52 (361)
T ss_dssp ---------------------------------------------CCSSCCSCCBCCCS
T ss_pred cccccccCCCCCCCCCcccc--------ccccCCCCCC-CCCCCCCcccCCCccccccc
Confidence 89999999999999999886 4444433333 37789999999999998775
No 29
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.46 E-value=4e-07 Score=64.95 Aligned_cols=80 Identities=26% Similarity=0.336 Sum_probs=53.6
Q ss_pred hHHHHhhhhcccccCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHH
Q 031980 58 LREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFE 137 (149)
Q Consensus 58 lrEIr~yQkst~lLIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiq 137 (149)
+.||+..- ..+.=-..+|..|+ +.|.+. .++..+++.+|..+|..|+|.|+..|.+.|+.+|.|.+|.||.++||+
T Consensus 4 ~~~~~~~~-~~~~~~~~lP~arI-krImK~--~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~ 79 (97)
T 1n1j_B 4 MEEIRNLT-VKDFRVQELPLARI-KKIMKL--DEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIA 79 (97)
T ss_dssp -----------------CCHHHH-HHHHTT--STTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred HHHHHhcc-cCCcCCCcCCHHHH-HHHHcc--CccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHH
Confidence 45666642 12222234455554 334443 344579999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 031980 138 LARR 141 (149)
Q Consensus 138 La~r 141 (149)
+|.+
T Consensus 80 ~Av~ 83 (97)
T 1n1j_B 80 MAIT 83 (97)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9964
No 30
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=98.26 E-value=2.1e-06 Score=63.46 Aligned_cols=70 Identities=26% Similarity=0.355 Sum_probs=61.1
Q ss_pred cccCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHH
Q 031980 69 DLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARR 141 (149)
Q Consensus 69 ~lLIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~r 141 (149)
++=.+.+|..| |+.|... .++..+++.+|..++..|+|.|+..|.+.|+.+|...+|.||.++||..|..
T Consensus 36 d~k~~~lPvaR-IkrImK~--d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~ 105 (119)
T 4g92_C 36 DYKIHQLPLAR-IKKVMKA--DPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALS 105 (119)
T ss_dssp CSSCCSSCHHH-HHHHHHT--STTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred ccccCCCCHHH-HHHHHhh--CCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHh
Confidence 33356789888 5667664 5677899999999999999999999999999999999999999999999864
No 31
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.04 E-value=5.8e-06 Score=59.10 Aligned_cols=65 Identities=15% Similarity=0.185 Sum_probs=50.3
Q ss_pred cchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHH
Q 031980 74 RMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARR 141 (149)
Q Consensus 74 k~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~r 141 (149)
.+|..|+ +.|.+. ..+..|++.+|...|-.|+|.|+..|.+.|..+|.|.+|.||.++||++|.+
T Consensus 11 ~fPvaRI-krimK~--~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~ 75 (98)
T 1jfi_A 11 RFPPARI-KKIMQT--DEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIE 75 (98)
T ss_dssp CCCHHHH-HHHHTT--STTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred CCChHHH-HHHHHc--CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHh
Confidence 3455554 333332 3444799999999999999999999999999999999999999999999854
No 32
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=97.99 E-value=1.2e-05 Score=59.79 Aligned_cols=67 Identities=15% Similarity=0.116 Sum_probs=61.2
Q ss_pred cccCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHH
Q 031980 69 DLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARR 141 (149)
Q Consensus 69 ~lLIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~r 141 (149)
+|-+|-.+|.|++++-.. ..|+.++|-..|-.+.|.+..+++|.+...|.|.++.+|.|+||+||.+
T Consensus 20 gLqfPV~ri~R~Lk~~~~------a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 20 GVIFPVGRMLRYIKKGHP------KYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp TCSSCHHHHHHHHHHHSS------SCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CccCChHHHHHHHHcCcc------ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 677899999999998542 2599999999999999999999999999999999999999999999975
No 33
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=97.98 E-value=1.1e-05 Score=60.09 Aligned_cols=67 Identities=22% Similarity=0.232 Sum_probs=60.7
Q ss_pred cccCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHH
Q 031980 69 DLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARR 141 (149)
Q Consensus 69 ~lLIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~r 141 (149)
+|.+|-.+|.|++++--. ..|+.++|-..|-.+.|.+..+++|.+...|.|+++.+|.|+||+||.+
T Consensus 21 gL~fPV~ri~R~Lk~~~~------a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 21 GLQFPVGRIHRLLRKGNY------AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp TCSSCHHHHHHHHHHTTS------CSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CeeccHHHHHHHHHcccc------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 677899999999887532 2599999999999999999999999999999999999999999999975
No 34
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=97.96 E-value=1.3e-05 Score=60.23 Aligned_cols=67 Identities=22% Similarity=0.229 Sum_probs=60.8
Q ss_pred cccCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHH
Q 031980 69 DLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARR 141 (149)
Q Consensus 69 ~lLIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~r 141 (149)
+|.+|-.+|.|++++-.. ..|+.++|-..|-.+.|.+..+++|.+...|.|.++.+|.|+||+||.+
T Consensus 23 gLqfPV~rI~R~Lk~~~~------a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 23 GLQFPVGRVHRLLRKGNY------AERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp TCSSCHHHHHHHHHHTTS------SSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ceeccHHHHHHHHHcccc------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 677899999999987532 2599999999999999999999999999999999999999999999975
No 35
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=97.89 E-value=1.6e-05 Score=61.20 Aligned_cols=68 Identities=22% Similarity=0.221 Sum_probs=61.2
Q ss_pred ccccCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHH
Q 031980 68 VDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARR 141 (149)
Q Consensus 68 t~lLIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~r 141 (149)
.+|.+|-.+|.|++++--. ..|+.++|-..|-.+.|.+..+++|.+...|.|+++.+|.|+||+||.+
T Consensus 41 agLqFPVgrI~R~LK~~~~------a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~ 108 (149)
T 2f8n_K 41 AGLQFPVGRVHRLLRKGNY------SERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 108 (149)
T ss_dssp HTCSSCHHHHHHHHHHTTS------CSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCeeccHHHHHHHHHcccc------ccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh
Confidence 3678899999999887532 2599999999999999999999999999999999999999999999975
No 36
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.85 E-value=1.6e-05 Score=59.93 Aligned_cols=67 Identities=22% Similarity=0.234 Sum_probs=60.1
Q ss_pred cccCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHH
Q 031980 69 DLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARR 141 (149)
Q Consensus 69 ~lLIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~r 141 (149)
+|.+|-.++.|++++-.. ..|+.++|-..|-.+.|.+..+++|.+...|.|.++.+|.|+||+||.+
T Consensus 23 gLqfPV~rI~R~Lk~~~~------a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 23 GLTFPVGRVHRLLRRGNY------AQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp TCSSCHHHHHHHHHTTCS------CSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CeecCHHHHHHHHHcccc------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 577888899998876432 2599999999999999999999999999999999999999999999975
No 37
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=97.82 E-value=2.3e-05 Score=58.79 Aligned_cols=69 Identities=17% Similarity=0.096 Sum_probs=61.2
Q ss_pred cccCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHHH
Q 031980 69 DLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRL 142 (149)
Q Consensus 69 ~lLIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~ri 142 (149)
+|.+|-.++.|+.++-.. ...|+.++|-..|-.+.|.+..+++|.+...|.|.++.+|.|+||+||.+-
T Consensus 25 gLqfPV~ri~R~Lk~~~~-----a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRTT-----SHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp TCSSCHHHHHHHHHHTSC-----SSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred CccCChHHHHHHHHHccc-----chhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 577899999999887542 125999999999999999999999999999999999999999999999753
No 38
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.82 E-value=1.9e-05 Score=64.85 Aligned_cols=53 Identities=25% Similarity=0.288 Sum_probs=49.9
Q ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHHHcc
Q 031980 92 DVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRLGG 144 (149)
Q Consensus 92 ~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~rirg 144 (149)
...|++.++.+.|.++.|.||..+..||..+|-||+|.||++.||.+|.+-.|
T Consensus 175 GVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 175 GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp TCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC
Confidence 34699999999999999999999999999999999999999999999988665
No 39
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.73 E-value=9.5e-05 Score=51.09 Aligned_cols=65 Identities=23% Similarity=0.265 Sum_probs=60.2
Q ss_pred cCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHH
Q 031980 71 LIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARR 141 (149)
Q Consensus 71 LIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~r 141 (149)
++.|--.+.||++|... ..+..++-+.|.+.+++|+-+..+.+-.+|.|-+--||.++|++|...
T Consensus 5 vl~k~~L~~Lv~~idp~------~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le 69 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDPN------EQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE 69 (76)
T ss_dssp SSCHHHHHHHHHHHCSS------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 56888999999999664 688999999999999999999999999999999999999999999864
No 40
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.65 E-value=6.9e-05 Score=59.24 Aligned_cols=68 Identities=21% Similarity=0.139 Sum_probs=60.9
Q ss_pred cccCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHH
Q 031980 69 DLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARR 141 (149)
Q Consensus 69 ~lLIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~r 141 (149)
+|.+|-.++.|++++-.. ...|+.++|...|-.+.|.+..+++|.+...|.|+++.+|.|+||+||.+
T Consensus 103 gl~fPv~ri~R~lk~~~~-----a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~ 170 (192)
T 2jss_A 103 GLQFPVGRIKRYLKRHAT-----GRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR 170 (192)
T ss_dssp SCCSCHHHHHHHHHHTTC-----SSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHhcCc-----cccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 788999999999987421 12699999999999999999999999999999999999999999999975
No 41
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=97.49 E-value=0.00028 Score=52.86 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=55.2
Q ss_pred chHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHHH
Q 031980 75 MSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRL 142 (149)
Q Consensus 75 ~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~ri 142 (149)
..+.++.+++-.| ..+++.|+..|-.-.+++...+...|..++.|.+|.||..+|||.|.++
T Consensus 37 ~YIyKVLKQVhpd------~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrL 98 (123)
T 2nqb_D 37 IYIYTVLKQVHPD------TGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRL 98 (123)
T ss_dssp HHHHHHHHHHCTT------CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC------CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHH
Confidence 3456677776554 7899999999999999999999999999999999999999999999886
No 42
>2x4w_B Histone H3.2; transcription, metal-binding, zinc-finger, chromatin regulator, transcription regulation; HET: M3L; 1.50A {Homo sapiens} PDB: 2x4x_B* 2x4y_B*
Probab=97.49 E-value=3.1e-05 Score=42.41 Aligned_cols=15 Identities=20% Similarity=0.133 Sum_probs=13.4
Q ss_pred CccCCcccCCCCchh
Q 031980 43 TAQRKRQRLRPGTKA 57 (149)
Q Consensus 43 ~~~kk~~r~rpgt~a 57 (149)
++++++||||||+||
T Consensus 12 ~~~kk~~RyRPGtvA 26 (26)
T 2x4w_B 12 GGVXKPHRYRXXXXX 26 (26)
T ss_pred CccccccccccccCC
Confidence 678889999999986
No 43
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=97.44 E-value=0.00021 Score=54.26 Aligned_cols=66 Identities=21% Similarity=0.166 Sum_probs=50.3
Q ss_pred CcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcCccccccccHHHHHH
Q 031980 73 PRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCA-IHAKRVTLMKKDFELARR 141 (149)
Q Consensus 73 pk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA-~HAkRvTi~~kDiqLa~r 141 (149)
..+|..|+ +.|.+. .+...+++.+|..++..|+|.|+..|.+.|+.+| ...+|.||..+||..|..
T Consensus 18 ~~LPlaRI-KrIMK~--dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~ 84 (140)
T 2byk_A 18 TFLPLSRV-RTIMKS--SMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN 84 (140)
T ss_dssp ------------CCS--SSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred CCCCHHHH-HHHHhc--CcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence 34566664 556664 4566799999999999999999999999999999 999999999999999875
No 44
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=97.38 E-value=0.00047 Score=51.79 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=54.7
Q ss_pred hHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHHH
Q 031980 76 SFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRL 142 (149)
Q Consensus 76 PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~ri 142 (149)
.+.++.+++-.| ..+++.|+..|-.-.+++...+...|..++.|.+|.||..+|||.|.++
T Consensus 41 YIyKVLKQVhpd------~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrL 101 (126)
T 1tzy_B 41 YVYKVLKQVHPD------TGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRL 101 (126)
T ss_dssp HHHHHHHHHCTT------CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHhCCC------CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 456667766554 7899999999999999999999999999999999999999999999886
No 45
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=96.69 E-value=0.0051 Score=48.41 Aligned_cols=65 Identities=14% Similarity=0.176 Sum_probs=54.4
Q ss_pred hHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHHH
Q 031980 76 SFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRL 142 (149)
Q Consensus 76 PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~ri 142 (149)
.|.-.|..+.... ..|..++.+|+.-|-.-.++.+..+-..|..++.|.+|.||..+|||.|.++
T Consensus 4 ~~~~yi~kvLkqv--~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl 68 (192)
T 2jss_A 4 TYSSYIYKVLKQT--HPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL 68 (192)
T ss_dssp TTHHHHHHHHHHH--CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHccc--CCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 3444455554441 2357899999999999999999999999999999999999999999999876
No 46
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=93.63 E-value=0.0086 Score=46.44 Aligned_cols=20 Identities=45% Similarity=0.424 Sum_probs=11.8
Q ss_pred CCcccccccccCcccccccC
Q 031980 2 ARTKHMARRSSRLQAAVKAT 21 (149)
Q Consensus 2 artK~~a~k~~~~~~~~~~~ 21 (149)
|||||+||||||+|++.+|+
T Consensus 1 ~~~~~~~r~s~~~K~~~~~~ 20 (159)
T 3a1b_A 1 ARTKQTARKSTGGKAPRKQL 20 (159)
T ss_dssp CEEEECCCC-------CHHH
T ss_pred CccccccccccCCCcchHHH
Confidence 79999999999999998876
No 47
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=87.92 E-value=2.4 Score=29.35 Aligned_cols=59 Identities=15% Similarity=0.066 Sum_probs=43.5
Q ss_pred HHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHH
Q 031980 79 REVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFE 137 (149)
Q Consensus 79 RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiq 137 (149)
.||.+|....+.....|++.+|+..++|..+-|+.+-+.-|+.-|---+-..|.++|++
T Consensus 16 ~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LE 74 (84)
T 4dra_E 16 ELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLE 74 (84)
T ss_dssp HHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHH
T ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHH
Confidence 34445555434446789999999999999999998888777766554456678888875
No 48
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=86.80 E-value=2.9 Score=28.70 Aligned_cols=62 Identities=16% Similarity=0.072 Sum_probs=44.4
Q ss_pred CCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHH
Q 031980 72 IPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFE 137 (149)
Q Consensus 72 Ipk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiq 137 (149)
||.--..||.++ .+.....|++++|+.++.|..+-|.++-+.-|..-|---+-..|.++|++
T Consensus 9 ~~~~lI~ril~~----~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LE 70 (81)
T 3b0b_C 9 FRKETVERLLRL----HFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVE 70 (81)
T ss_dssp CCHHHHHHHHHH----HCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred CCHHHHHHHHHH----HhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHH
Confidence 454444455544 34456789999999999999999998888777776544455567777774
No 49
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=70.88 E-value=6.5 Score=26.67 Aligned_cols=59 Identities=15% Similarity=0.190 Sum_probs=40.7
Q ss_pred cCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccc
Q 031980 71 LIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKK 134 (149)
Q Consensus 71 LIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~k 134 (149)
++...|.|+=+.||+..+ .-.-+.++++..+--|+|..|-+|+|.-...|-| |+..-.+
T Consensus 2 fL~~~~Lqkri~~I~~k~---gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~--R~~~~K~ 60 (75)
T 1h3o_A 2 FLLQAPLQRRILEIGKKH---GITELHPDVVSYVSHATQQRLQNLVEKISETAQQ--KNFSYKD 60 (75)
T ss_dssp CSCHHHHHHHHHHHHHTT---TCCEECTTHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred ccccHHHHHHHHHHHHhc---CCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHh--hhhhhcC
Confidence 567889999999999972 2345889999999999999999999987766665 4444333
No 50
>3avr_B Histone H3; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
Probab=70.13 E-value=2 Score=22.78 Aligned_cols=9 Identities=11% Similarity=0.084 Sum_probs=6.5
Q ss_pred CccCCcccC
Q 031980 43 TAQRKRQRL 51 (149)
Q Consensus 43 ~~~kk~~r~ 51 (149)
++++++||.
T Consensus 17 ~g~kk~hR~ 25 (26)
T 3avr_B 17 GGVKKPXXX 25 (26)
T ss_pred ccccccCCC
Confidence 677888874
No 51
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=60.09 E-value=15 Score=29.10 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=43.4
Q ss_pred ccccCHHHHHHHHHHHHH----HHHHHHHHHHHHhhhcCccccccccHHHHHHH
Q 031980 93 VNRWTPEALIALQEAAED----FLVNLFGDAMLCAIHAKRVTLMKKDFELARRL 142 (149)
Q Consensus 93 ~~Rfq~~Al~aLQeAaE~----yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~ri 142 (149)
...|..+++..|.+.++. ++..+++.+...|.-.++..|..+|++-+...
T Consensus 276 ~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 276 DVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp TCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 467999999999999983 88999999999998889999999999887654
No 52
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=58.03 E-value=7.9 Score=28.43 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=29.4
Q ss_pred CCccccCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031980 91 PDVNRWTPEALIALQEAAEDFLVNLFGDAMLCA 123 (149)
Q Consensus 91 ~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA 123 (149)
....|++.++.+.+.++.|.||..+..|++..+
T Consensus 60 gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~ya 92 (121)
T 2ly8_A 60 RGSKRISGLIYEEVRAVLKSFLESVIRDSVTYT 92 (121)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999988653
No 53
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=55.94 E-value=18 Score=28.15 Aligned_cols=72 Identities=17% Similarity=0.048 Sum_probs=57.7
Q ss_pred hhhhcccc--cCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHH
Q 031980 63 RFQKSVDL--LIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELAR 140 (149)
Q Consensus 63 ~yQkst~l--LIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~ 140 (149)
.|.+-.+. +|+-.-|++|.|+.+. +=+..+=+.-+-+..|.-|..||+-+..-|.--+|-.|.+.|+.+..
T Consensus 16 ~~~~~~~Mm~vmg~~kferlFR~aag-------LDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLPITK 88 (171)
T 1r4v_A 16 NYSKIETMLRPKGFDKLDHYFRTELD-------IDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLNITK 88 (171)
T ss_dssp -----CCTTSCTTHHHHHHHHHHHHC-------CCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSCCCH
T ss_pred cHHHHHHHHhcCChHHHHHHHHHHhc-------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCccH
Confidence 56676777 8899999999999886 33457778889999999999999999999999999999999986544
Q ss_pred H
Q 031980 141 R 141 (149)
Q Consensus 141 r 141 (149)
.
T Consensus 89 G 89 (171)
T 1r4v_A 89 A 89 (171)
T ss_dssp H
T ss_pred H
Confidence 3
No 54
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=46.06 E-value=7.9 Score=28.97 Aligned_cols=10 Identities=30% Similarity=0.351 Sum_probs=9.4
Q ss_pred CccCCcccCC
Q 031980 43 TAQRKRQRLR 52 (149)
Q Consensus 43 ~~~kk~~r~r 52 (149)
+++|++||||
T Consensus 127 gGvkk~hr~r 136 (136)
T 2k3y_A 127 GGVXKPHRYR 136 (136)
T ss_dssp TTSCCCSSCC
T ss_pred CCccCCCcCC
Confidence 8999999997
No 55
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=45.65 E-value=53 Score=31.25 Aligned_cols=81 Identities=9% Similarity=0.073 Sum_probs=59.4
Q ss_pred chhhHHHHhh--hhcc--cccCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccc
Q 031980 55 TKALREIRRF--QKSV--DLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVT 130 (149)
Q Consensus 55 t~alrEIr~y--Qkst--~lLIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvT 130 (149)
..|+.|++.- -+|. +|.+|---..|+.+..- ..|+.+.|-.=|--+.|....+++|-|...|...++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~pv~~~~~~l~~~~-------~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~ 156 (1049)
T 3ksy_A 84 KWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKEVL-------GYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYE 156 (1049)
T ss_dssp HHHHHHHHHHHTTCCCSSSCSSCHHHHHHHHHHHH-------CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCB
T ss_pred HHHHHHHHHhhhcccccCCccccHHHHHHHhhccc-------ccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCce
Confidence 5677777544 1222 44444444444442221 25999999999999999999999999999999999999
Q ss_pred cccccHHHHHHH
Q 031980 131 LMKKDFELARRL 142 (149)
Q Consensus 131 i~~kDiqLa~ri 142 (149)
|.+.|+++|.+-
T Consensus 157 i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 157 ITKQDIKVAMCA 168 (1049)
T ss_dssp CCHHHHHHHHHH
T ss_pred ecCccccccccC
Confidence 999999999753
No 56
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=43.42 E-value=40 Score=25.56 Aligned_cols=63 Identities=19% Similarity=0.147 Sum_probs=50.7
Q ss_pred cCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHH
Q 031980 71 LIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELAR 140 (149)
Q Consensus 71 LIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~ 140 (149)
+|+-.-|+++.|+.+. +=+..+=+.-+-+..|.-+..||+-+..-|.--+|-.|.+.|+.+..
T Consensus 2 vm~~~~~e~lFR~aa~-------LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLPITk 64 (148)
T 1wwi_A 2 LMKVAEFERLFRQAAG-------LDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLPIAK 64 (148)
T ss_dssp CSCHHHHHHHHHHHHC-------CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSCCCH
T ss_pred cCCHHHHHHHHHHHhc-------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCccH
Confidence 4666679999998876 22234446678889999999999999999999999999999986544
No 57
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=42.64 E-value=50 Score=25.67 Aligned_cols=49 Identities=10% Similarity=-0.031 Sum_probs=40.5
Q ss_pred cccCHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhcCccccccccHHHHHHH
Q 031980 94 NRWTPEALIALQEAAED-------FLVNLFGDAMLCAIHAKRVTLMKKDFELARRL 142 (149)
Q Consensus 94 ~Rfq~~Al~aLQeAaE~-------yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~ri 142 (149)
..|+.+++..|.+.+.. .+..+.+.+...|.-.++-+|..+|++-+..+
T Consensus 266 ~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 266 VEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATM 321 (350)
T ss_dssp CBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 58999999999888764 67788888888888888999999999876654
No 58
>1rk8_C PYM protein, within the BGCN gene intron protein, CG30176-PA; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: b.72.3.1
Probab=42.04 E-value=6.6 Score=25.56 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=14.3
Q ss_pred CccCCcccCCCCchhhHHHHhhhhccc
Q 031980 43 TAQRKRQRLRPGTKALREIRRFQKSVD 69 (149)
Q Consensus 43 ~~~kk~~r~rpgt~alrEIr~yQkst~ 69 (149)
|+.+|..|.|||=+..-|+..|+....
T Consensus 21 GT~RK~irVr~GY~Pqeev~~Y~~k~~ 47 (58)
T 1rk8_C 21 GTWRKARRVKDGYVPQEEVPLYESKGK 47 (58)
T ss_dssp SCEECCEECCTTCCC------------
T ss_pred CccccceeccCCcCCHHHhhhhhhhhh
Confidence 789999999999999999999987653
No 59
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=40.92 E-value=14 Score=23.59 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhhhcCccccccccHHHHHH
Q 031980 110 DFLVNLFGDAMLCAIHAKRVTLMKKDFELARR 141 (149)
Q Consensus 110 ~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~r 141 (149)
+-|..+..+|.+.|+...+..|..+|+.-|..
T Consensus 40 ADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~ 71 (78)
T 3kw6_A 40 AEVKGVCTEAGMYALRERRVHVTQEDFEMAVA 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 34777788888888888999999999987754
No 60
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=38.00 E-value=96 Score=27.08 Aligned_cols=49 Identities=18% Similarity=0.110 Sum_probs=41.5
Q ss_pred cccCHHHHHHHHHHH-------------HHHHHHHHHHHHHHhhhcCccccccccHHHHHHH
Q 031980 94 NRWTPEALIALQEAA-------------EDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRL 142 (149)
Q Consensus 94 ~Rfq~~Al~aLQeAa-------------E~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~ri 142 (149)
..|+.+|+..|.+.+ ...|.++.+.|...|...++..|..+|++-|...
T Consensus 313 ~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 313 PHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp CCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 579999999988755 5678899999998888888999999999888643
No 61
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=37.47 E-value=26 Score=28.71 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=25.0
Q ss_pred HHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHH
Q 031980 78 IREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLF 116 (149)
Q Consensus 78 ~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lf 116 (149)
..++++|+.+......+||...--.+|||.+|++...-|
T Consensus 98 ~~~~~~La~~l~~~~~yry~~~~s~~lQEyVEA~sf~~y 136 (290)
T 3qb5_K 98 RQKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHF 136 (290)
T ss_dssp HHHHHHHHHHHSSSCSTTTGGGTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555432334478876666799999999766554
No 62
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=32.91 E-value=57 Score=22.69 Aligned_cols=58 Identities=16% Similarity=0.294 Sum_probs=36.1
Q ss_pred CCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-----------cccccccHH
Q 031980 72 IPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKR-----------VTLMKKDFE 137 (149)
Q Consensus 72 Ipk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkR-----------vTi~~kDiq 137 (149)
||+--..||.. .++...+.|++.+|+.++++..+-|+-+ |.+-|++-++ ..|..+|++
T Consensus 2 ip~~llaRIL~----~~F~~~kTrIt~da~~lv~kY~diFVrE----Av~Rs~e~ke~~~~~~~~~~d~~LeveDLE 70 (88)
T 3v9r_B 2 LSKEALIKILS----QNEGGNDMKIADEVVPMIQKYLDIFIDE----AVLRSLQSHKDINGERGDKSPLELSHQDLE 70 (88)
T ss_dssp CCSHHHHHHHT----TTSCSSCCEECTTTHHHHHHHHHHHHHH----HHHHHHHHHHCC-----------CCHHHHH
T ss_pred CCHHHHHHHHH----HHhCCCCceecHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhcccccCCCCCeeehHHHH
Confidence 45554555554 4456678999999999999877666544 3444444333 366777764
No 63
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=29.00 E-value=22 Score=23.43 Aligned_cols=32 Identities=31% Similarity=0.281 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhhhcCccccccccHHHHHH
Q 031980 110 DFLVNLFGDAMLCAIHAKRVTLMKKDFELARR 141 (149)
Q Consensus 110 ~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~r 141 (149)
+-|..|..+|.+.|++..+..|..+|+.-|..
T Consensus 38 ADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~ 69 (88)
T 3vlf_B 38 AELRSVCTEAGMFAIRARRKVATEKDFLKAVD 69 (88)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 34677777788888888999999999987765
No 64
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=26.82 E-value=1e+02 Score=27.15 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=40.2
Q ss_pred hHHHHhhhhc-----ccccCCcchHHHHHHHHhhhcCCCCccccCHHHHHHHHHHHHHHHHHHHHH
Q 031980 58 LREIRRFQKS-----VDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGD 118 (149)
Q Consensus 58 lrEIr~yQks-----t~lLIpk~PF~RLVrEI~~~~~~~~~~Rfq~~Al~aLQeAaE~yLv~Lfed 118 (149)
..||+.|.+. .-+++|-..|..||++-.. +|..-|+.+++.+.| ++...|..
T Consensus 405 ~~~i~~~~~~~~g~~~~~f~~~~~fe~lvk~qi~--------~l~~Pa~~~v~~V~~-~v~~~~~~ 461 (608)
T 3szr_A 405 SRKIQKFENQAAAAELPGFVNYRTFETIVKQQIK--------ALEEPAVDMLHTVTD-MVRLAFTD 461 (608)
T ss_dssp HHHHHHHHHHCCSCSSSCSSCTHHHHHHHHHHHG--------GGHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCccHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4778876553 2457889999999998876 688999999998887 66666654
No 65
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=26.57 E-value=66 Score=23.05 Aligned_cols=47 Identities=9% Similarity=-0.066 Sum_probs=33.2
Q ss_pred ccccCHHHHHHHHHHHHH---HHHHHHHHHHHHhhhcCccccccccHHHHH
Q 031980 93 VNRWTPEALIALQEAAED---FLVNLFGDAMLCAIHAKRVTLMKKDFELAR 140 (149)
Q Consensus 93 ~~Rfq~~Al~aLQeAaE~---yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~ 140 (149)
+..++.+++..|.+.++- .+..+++.+...+...++ +|..+|++-+.
T Consensus 191 ~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~-~It~~~v~~~l 240 (242)
T 3bos_A 191 GLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQR-KLTIPFVKEML 240 (242)
T ss_dssp TCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTC-CCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHh
Confidence 357889999998888773 566666666666655454 58888887654
No 66
>2dsy_A Hypothetical protein TTHA0281; structural genomics, thermus thermophilus HB8, NPPSFA; HET: NHE; 1.90A {Thermus thermophilus} SCOP: d.304.1.2
Probab=25.01 E-value=68 Score=21.30 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031980 98 PEALIALQEAAEDFLVNLFGDAM 120 (149)
Q Consensus 98 ~~Al~aLQeAaE~yLv~Lfeda~ 120 (149)
.+|+..++||.+.||..+.++-.
T Consensus 47 eEA~~~a~eAl~~~le~~~e~g~ 69 (87)
T 2dsy_A 47 KECEANLQAALEDWLLFLLSRGE 69 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC
Confidence 78999999999999998887643
No 67
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=24.48 E-value=54 Score=23.05 Aligned_cols=46 Identities=17% Similarity=0.083 Sum_probs=28.5
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHH
Q 031980 93 VNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELA 139 (149)
Q Consensus 93 ~~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa 139 (149)
...+..+++..|.+.++-..-.+..-...+...++. +|..+|++-+
T Consensus 202 ~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~~-~i~~~~v~~~ 247 (250)
T 1njg_A 202 HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG-QVSTQAVSAM 247 (250)
T ss_dssp TCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTTS-SBCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCc-eecHHHHHHH
Confidence 357888888888888775443333333333444443 7888888655
No 68
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=23.24 E-value=84 Score=20.06 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhhhcCccccccccHHHHHH
Q 031980 110 DFLVNLFGDAMLCAIHAKRVTLMKKDFELARR 141 (149)
Q Consensus 110 ~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~r 141 (149)
+-|..+..+|.+.|++..+..|..+|+.-|..
T Consensus 35 ADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~ 66 (82)
T 2dzn_B 35 AVIAAIMQEAGLRAVRKNRYVILQSDLEEAYA 66 (82)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 34555666677778888888999999987654
No 69
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=21.83 E-value=54 Score=22.87 Aligned_cols=46 Identities=11% Similarity=-0.079 Sum_probs=30.2
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccccHHHHHH
Q 031980 94 NRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARR 141 (149)
Q Consensus 94 ~Rfq~~Al~aLQeAaE~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~r 141 (149)
..++.+++..|.+.+.-.+-.+......++..+ -+|..+|++-+..
T Consensus 179 ~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 179 VKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp CCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 458888888888777655544444444445555 4777888876653
No 70
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=21.00 E-value=98 Score=19.57 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhhhcCccccccccHHHHHH
Q 031980 110 DFLVNLFGDAMLCAIHAKRVTLMKKDFELARR 141 (149)
Q Consensus 110 ~yLv~Lfeda~lcA~HAkRvTi~~kDiqLa~r 141 (149)
+-|..+..+|.+.|+...+..|..+|+.-|..
T Consensus 38 ADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~ 69 (83)
T 3aji_B 38 ADINSICQESGMLAVRENRYIVLAKDFEKAYK 69 (83)
T ss_dssp HHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 44666777888889988889999999987654
Done!