BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031981
         (149 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O61585|KTNB1_STRPU Katanin p80 WD40 repeat-containing subunit B1 OS=Strongylocentrotus
           purpuratus GN=KATNB1 PE=1 SV=1
          Length = 690

 Score = 30.4 bits (67), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 29  PSKKLT--GSIKFLIKTPNHSSTSSIQRQFTTQASKDPQTEEQEESSIDDNAED 80
           PSK LT  G   F+ + P+  +TSS QRQ   ++  + Q+  Q+E   DD+A D
Sbjct: 326 PSKPLTASGRKNFVRERPH--TTSSKQRQPDVKSEPERQSPTQDEGVKDDDATD 377


>sp|Q66652|BRLF1_EHV2 Putative transcription activator BRLF1 homolog OS=Equine
           herpesvirus 2 (strain 86/87) GN=50 PE=3 SV=1
          Length = 630

 Score = 30.4 bits (67), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 53  QRQFTTQASKDPQTEEQEES-SIDDNAEDASTFEEDLSYLW 92
           QRQ T Q+S +P  EE+E   ++    ED    EE LS L+
Sbjct: 532 QRQLTPQSSPEPADEEEEGPLNLTTRTEDHEILEEILSNLY 572


>sp|Q6CKX0|XRN2_KLULA 5'-3' exoribonuclease 2 OS=Kluyveromyces lactis (strain ATCC 8585 /
           CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
           GN=RAT1 PE=3 SV=3
          Length = 992

 Score = 30.0 bits (66), Expect = 5.9,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 30  SKKLTGSIKFLIKTPNHSSTSSIQRQFTTQASKDPQTEEQEESSIDDNAEDASTFEEDLS 89
           S++L  S++ L KT N+ + +S+Q +   +       E  EE S+   +ED  + E++ S
Sbjct: 491 SEELKNSVQ-LSKTANYDAATSLQEKLIAKKMAMRDEENAEELSLKRKSEDVDSAEKETS 549


>sp|P65487|MUTB_MYCTU Probable methylmalonyl-CoA mutase large subunit OS=Mycobacterium
           tuberculosis GN=mutB PE=3 SV=1
          Length = 750

 Score = 29.6 bits (65), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 80  DASTFEEDLSYLWKIGVGSFVGAAVIKYGSILFPEIT 116
           D  +F   LS+ W IG+  F+  A ++ G +L+ E+ 
Sbjct: 292 DIDSFAPRLSFFWGIGMNFFMEVAKLRAGRLLWSELV 328


>sp|P65488|MUTB_MYCBO Probable methylmalonyl-CoA mutase large subunit OS=Mycobacterium
           bovis (strain ATCC BAA-935 / AF2122/97) GN=mutB PE=3
           SV=1
          Length = 750

 Score = 29.6 bits (65), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 80  DASTFEEDLSYLWKIGVGSFVGAAVIKYGSILFPEIT 116
           D  +F   LS+ W IG+  F+  A ++ G +L+ E+ 
Sbjct: 292 DIDSFAPRLSFFWGIGMNFFMEVAKLRAGRLLWSELV 328


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.124    0.344 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,308,580
Number of Sequences: 539616
Number of extensions: 1734777
Number of successful extensions: 6876
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 6821
Number of HSP's gapped (non-prelim): 82
length of query: 149
length of database: 191,569,459
effective HSP length: 107
effective length of query: 42
effective length of database: 133,830,547
effective search space: 5620882974
effective search space used: 5620882974
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)