Query 031981
Match_columns 149
No_of_seqs 15 out of 17
Neff 1.9
Searched_HMMs 46136
Date Fri Mar 29 08:00:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031981.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031981hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12880 3-oxoacyl-(acyl carri 60.9 3.3 7.1E-05 34.7 0.4 29 89-117 320-348 (353)
2 PRK11878 psaM photosystem I re 47.2 24 0.00052 22.3 2.6 26 113-138 3-28 (34)
3 TIGR03053 PS_I_psaM photosyste 45.9 29 0.00064 21.2 2.8 23 115-137 1-23 (29)
4 PF07465 PsaM: Photosystem I p 44.1 28 0.0006 21.4 2.5 23 115-137 1-23 (29)
5 PF05969 PSII_Ycf12: Photosyst 40.7 38 0.00083 21.4 2.8 19 120-138 10-28 (33)
6 PF11884 DUF3404: Domain of un 39.7 40 0.00087 29.1 3.7 44 85-129 190-238 (262)
7 CHL00190 psaM photosystem I su 39.3 41 0.00088 20.8 2.7 23 115-137 2-24 (30)
8 PF15102 TMEM154: TMEM154 prot 36.2 9.5 0.00021 30.5 -0.5 6 125-130 59-64 (146)
9 PF02656 DUF202: Domain of unk 34.2 25 0.00053 23.0 1.3 53 95-147 18-73 (73)
10 PTZ00250 variable surface prot 31.5 45 0.00097 29.6 2.8 38 110-147 262-304 (350)
11 PF10717 ODV-E18: Occlusion-de 30.1 75 0.0016 23.8 3.3 29 114-144 20-48 (85)
12 PF13955 Fst_toxin: Toxin Fst, 30.0 75 0.0016 18.5 2.6 17 124-140 1-17 (21)
13 PF10766 DUF2592: Protein of u 29.9 62 0.0013 21.5 2.6 17 122-138 5-21 (41)
14 COG3263 NhaP-type Na+/H+ and K 27.9 46 0.00099 31.9 2.4 36 112-147 294-332 (574)
15 KOG2735 Phosphatidylserine syn 25.6 80 0.0017 29.6 3.4 36 101-136 386-421 (466)
16 PRK04989 psbM photosystem II r 24.8 1E+02 0.0022 19.9 2.8 23 123-145 11-33 (35)
17 PRK06840 hypothetical protein; 24.2 26 0.00057 28.2 0.1 27 84-110 312-338 (339)
18 PRK13275 mtrF tetrahydromethan 24.1 91 0.002 22.2 2.8 17 120-136 49-65 (67)
19 PF12841 YvrJ: YvrJ protein fa 23.4 65 0.0014 20.5 1.7 16 128-143 7-22 (38)
20 TIGR03025 EPS_sugtrans exopoly 22.5 1.1E+02 0.0024 26.0 3.5 26 119-144 262-289 (445)
21 TIGR03022 WbaP_sugtrans Undeca 22.1 1.2E+02 0.0025 26.0 3.5 25 119-143 263-289 (456)
22 TIGR02507 MtrF tetrahydrometha 22.0 76 0.0016 22.6 2.0 15 120-134 49-63 (65)
23 PF14033 DUF4246: Protein of u 21.4 97 0.0021 28.2 3.1 63 48-122 387-452 (501)
24 PF05552 TM_helix: Conserved T 21.3 1.5E+02 0.0032 18.7 3.1 19 118-136 16-34 (53)
25 PF01115 F_actin_cap_B: F-acti 20.2 30 0.00065 29.5 -0.3 21 88-108 119-140 (242)
No 1
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=60.92 E-value=3.3 Score=34.72 Aligned_cols=29 Identities=24% Similarity=0.356 Sum_probs=24.4
Q ss_pred hhhhhhhcccccceeeeeeccccccccCC
Q 031981 89 SYLWKIGVGSFVGAAVIKYGSILFPEITR 117 (149)
Q Consensus 89 ~Yl~KL~aGSv~GAa~IKYGSil~P~ITr 117 (149)
.-|+-.|+|.-.|+++++||.+++|++..
T Consensus 320 ~ll~~~G~G~s~g~~ll~~~~~~~~~~~~ 348 (353)
T PRK12880 320 ASLSAFGAGLSWGSAVLNFKDLYTKDILI 348 (353)
T ss_pred EEEEEEchhhhheEeEEEECCcCCCceEe
Confidence 35666788999999999999999999753
No 2
>PRK11878 psaM photosystem I reaction center subunit XII; Reviewed
Probab=47.24 E-value=24 Score=22.34 Aligned_cols=26 Identities=35% Similarity=0.392 Sum_probs=22.2
Q ss_pred cccCCchHHHHHHHHHHHHHHHHHHH
Q 031981 113 PEITRPNISLALVMISTPVVLAVWLL 138 (149)
Q Consensus 113 P~ITrPNi~lAL~mV~~PvvvaV~lL 138 (149)
++|+..-|.+||++.+.|-+.|+-|=
T Consensus 3 ~~isd~Qi~iaL~~Al~~giLA~RLG 28 (34)
T PRK11878 3 PSLTDTQVFVALVVALHAGVLALRLG 28 (34)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888899999999999999887653
No 3
>TIGR03053 PS_I_psaM photosystem I reaction center subunit XII. Members of this protein family are PsaM, which is subunit XII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen. The seed alignment for this model includes sequences from Pfam model pfam07465 and additional sequences, as from Prochlorococcus.
Probab=45.90 E-value=29 Score=21.16 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=19.3
Q ss_pred cCCchHHHHHHHHHHHHHHHHHH
Q 031981 115 ITRPNISLALVMISTPVVLAVWL 137 (149)
Q Consensus 115 ITrPNi~lAL~mV~~PvvvaV~l 137 (149)
|+...|.+||++.++|-+.|+-|
T Consensus 1 isd~Qi~iaL~~Al~~~iLA~rL 23 (29)
T TIGR03053 1 ISDSQIFIALVIALIAGILALRL 23 (29)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 56678999999999999988755
No 4
>PF07465 PsaM: Photosystem I protein M (PsaM); InterPro: IPR010010 Members of this protein family are PsaM, which is subunit XII of the photosystem I reaction centre. PsaM forms part of the photosystem I complex and its binding is stabilised by PsaI []. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen.; GO: 0015979 photosynthesis, 0009522 photosystem I, 0030094 plasma membrane-derived photosystem I; PDB: 3PCQ_M 1JB0_M.
Probab=44.07 E-value=28 Score=21.39 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=18.2
Q ss_pred cCCchHHHHHHHHHHHHHHHHHH
Q 031981 115 ITRPNISLALVMISTPVVLAVWL 137 (149)
Q Consensus 115 ITrPNi~lAL~mV~~PvvvaV~l 137 (149)
|+.-.|.+||++-++|-+.|+-|
T Consensus 1 isd~Qi~iAL~~Al~~~iLA~rL 23 (29)
T PF07465_consen 1 ISDSQIFIALVIALITGILALRL 23 (29)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 46678999999999999988755
No 5
>PF05969 PSII_Ycf12: Photosystem II complex subunit Ycf12; InterPro: IPR010284 This family represents Ycf12, a core subunit of photosystem II; its function is unknown []. ; GO: 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3BZ2_y 3PRR_y 3PRQ_y 4FBY_m 3KZI_y 3BZ1_y 3A0B_y 3A0H_y 3ARC_Y.
Probab=40.73 E-value=38 Score=21.39 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031981 120 ISLALVMISTPVVLAVWLL 138 (149)
Q Consensus 120 i~lAL~mV~~PvvvaV~lL 138 (149)
..+|++++..|.|++.+..
T Consensus 10 ~~l~liv~aGP~VI~lLa~ 28 (33)
T PF05969_consen 10 TSLALIVLAGPLVIFLLAA 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHhhHHHh
Confidence 4688999999988776543
No 6
>PF11884 DUF3404: Domain of unknown function (DUF3404); InterPro: IPR021821 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 260 amino acids in length. This domain is found associated with PF02518 from PFAM, PF00512 from PFAM.
Probab=39.73 E-value=40 Score=29.11 Aligned_cols=44 Identities=16% Similarity=0.258 Sum_probs=27.8
Q ss_pred ccchhhhhhhhccccc-----ceeeeeeccccccccCCchHHHHHHHHHH
Q 031981 85 EEDLSYLWKIGVGSFV-----GAAVIKYGSILFPEITRPNISLALVMIST 129 (149)
Q Consensus 85 ~eDl~Yl~KL~aGSv~-----GAa~IKYGSil~P~ITrPNi~lAL~mV~~ 129 (149)
+++++=+++=..-++. ..-.++||+||.-+-..++++ ..+||++
T Consensus 190 ~~~W~p~a~~~~l~l~~~~~~~sC~~r~gNlCw~~~~~s~l~-~~~~i~L 238 (262)
T PF11884_consen 190 ESVWQPLAEQAGLTLSLRSAGNSCFVRYGNLCWSEEDHSHLL-RISMIAL 238 (262)
T ss_pred HHHHHHHHHhcCceEecccCCCcccceecceeeccCCchhHH-HHHHHHH
Confidence 4445545544333443 478899999999997777765 3444444
No 7
>CHL00190 psaM photosystem I subunit XII; Provisional
Probab=39.27 E-value=41 Score=20.84 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=19.5
Q ss_pred cCCchHHHHHHHHHHHHHHHHHH
Q 031981 115 ITRPNISLALVMISTPVVLAVWL 137 (149)
Q Consensus 115 ITrPNi~lAL~mV~~PvvvaV~l 137 (149)
|+...|.+||++-++|-+.|+=|
T Consensus 2 isd~Qi~iAL~~Al~~~iLA~rL 24 (30)
T CHL00190 2 ISDSQIFIALFLALTTGILAIRL 24 (30)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 67778999999999999888754
No 8
>PF15102 TMEM154: TMEM154 protein family
Probab=36.21 E-value=9.5 Score=30.51 Aligned_cols=6 Identities=50% Similarity=0.833 Sum_probs=2.6
Q ss_pred HHHHHH
Q 031981 125 VMISTP 130 (149)
Q Consensus 125 ~mV~~P 130 (149)
+||++|
T Consensus 59 LmIlIP 64 (146)
T PF15102_consen 59 LMILIP 64 (146)
T ss_pred EEEeHH
Confidence 344444
No 9
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=34.18 E-value=25 Score=23.01 Aligned_cols=53 Identities=19% Similarity=0.287 Sum_probs=27.1
Q ss_pred hcccccceeeeeecccccccc---CCchHHHHHHHHHHHHHHHHHHHHhccccccc
Q 031981 95 GVGSFVGAAVIKYGSILFPEI---TRPNISLALVMISTPVVLAVWLLIKQSSSVKW 147 (149)
Q Consensus 95 ~aGSv~GAa~IKYGSil~P~I---TrPNi~lAL~mV~~PvvvaV~lLik~S~~~k~ 147 (149)
.+-...|.++++++...-+.- ...-..++++++.+-+++.++-...--++.||
T Consensus 18 l~l~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ry~~~~~~ 73 (73)
T PF02656_consen 18 LALVGVGLALLRFFSLDHPSSSASRRVSKVLGLLLIVLGLLTLIYGIYRYRRRRRW 73 (73)
T ss_pred HHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334455666777765544322 23344455555555555555544444455555
No 10
>PTZ00250 variable surface protein Vir23; Provisional
Probab=31.51 E-value=45 Score=29.56 Aligned_cols=38 Identities=26% Similarity=0.365 Sum_probs=30.3
Q ss_pred ccccccCCc-----hHHHHHHHHHHHHHHHHHHHHhccccccc
Q 031981 110 ILFPEITRP-----NISLALVMISTPVVLAVWLLIKQSSSVKW 147 (149)
Q Consensus 110 il~P~ITrP-----Ni~lAL~mV~~PvvvaV~lLik~S~~~k~ 147 (149)
.++|-+--+ ||++-..+|+.|.++..++|.|--.--+|
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (350)
T PTZ00250 262 FILPIFGNDADDIINILLKVAIISAPFLAIFLILFKFTPFGKK 304 (350)
T ss_pred eeeeecCCCHHHHHHHHHhhhhhhhhHHHHHHHHhccCchHHH
Confidence 567777777 99999999999999999988876544444
No 11
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=30.12 E-value=75 Score=23.80 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=14.9
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHhcccc
Q 031981 114 EITRPNISLALVMISTPVVLAVWLLIKQSSS 144 (149)
Q Consensus 114 ~ITrPNi~lAL~mV~~PvvvaV~lLik~S~~ 144 (149)
.--.||.+.-.++++ |+++.++++-|||+
T Consensus 20 ~~l~pn~lMtILivL--VIIiLlImlfqsSS 48 (85)
T PF10717_consen 20 NGLNPNTLMTILIVL--VIIILLIMLFQSSS 48 (85)
T ss_pred cccChhHHHHHHHHH--HHHHHHHHHHhccC
Confidence 344678765544443 44444444555544
No 12
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=29.99 E-value=75 Score=18.47 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 031981 124 LVMISTPVVLAVWLLIK 140 (149)
Q Consensus 124 L~mV~~PvvvaV~lLik 140 (149)
+..|..|.+|-|+|.+-
T Consensus 1 f~~iIaPi~VGvvl~l~ 17 (21)
T PF13955_consen 1 FTTIIAPIVVGVVLTLF 17 (21)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred CceehhhHHHHHHHHHH
Confidence 35688999999888653
No 13
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=29.92 E-value=62 Score=21.51 Aligned_cols=17 Identities=47% Similarity=0.626 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031981 122 LALVMISTPVVLAVWLL 138 (149)
Q Consensus 122 lAL~mV~~PvvvaV~lL 138 (149)
++..++..||+.+++|=
T Consensus 5 l~fa~iMVPVvma~ilg 21 (41)
T PF10766_consen 5 LAFAVIMVPVVMALILG 21 (41)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555667999998763
No 14
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=27.95 E-value=46 Score=31.87 Aligned_cols=36 Identities=33% Similarity=0.336 Sum_probs=26.0
Q ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHH---hccccccc
Q 031981 112 FPEITRPNISLALVMISTPVVLAVWLLI---KQSSSVKW 147 (149)
Q Consensus 112 ~P~ITrPNi~lAL~mV~~PvvvaV~lLi---k~S~~~k~ 147 (149)
+|+|+-|-|++++.|++.-==++||+.+ |.++++||
T Consensus 294 l~~iavPailL~l~mifvaRP~aV~l~l~Pfrf~~~Ek~ 332 (574)
T COG3263 294 LLPIAIPAILLSLWMIFVARPLAVFLGLIPFRFNRREKL 332 (574)
T ss_pred hhHhhHHHHHHHHHHHHHHhHHHHHHhhcccccCccchh
Confidence 5679999999999998875556666654 34455554
No 15
>KOG2735 consensus Phosphatidylserine synthase [Lipid transport and metabolism]
Probab=25.63 E-value=80 Score=29.65 Aligned_cols=36 Identities=28% Similarity=0.218 Sum_probs=27.1
Q ss_pred ceeeeeeccccccccCCchHHHHHHHHHHHHHHHHH
Q 031981 101 GAAVIKYGSILFPEITRPNISLALVMISTPVVLAVW 136 (149)
Q Consensus 101 GAa~IKYGSil~P~ITrPNi~lAL~mV~~PvvvaV~ 136 (149)
-+..||||+..|+.-..=||++-++++..--+.-|+
T Consensus 386 l~IciKfg~~~f~~t~~~~Ivlw~l~~v~~t~~~v~ 421 (466)
T KOG2735|consen 386 LLICIKFGSHMFIKTQINYIVLWLLMGVIGTFTCVL 421 (466)
T ss_pred hhhheeeCCceeeecchhHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999987776544443333
No 16
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=24.80 E-value=1e+02 Score=19.86 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHhccccc
Q 031981 123 ALVMISTPVVLAVWLLIKQSSSV 145 (149)
Q Consensus 123 AL~mV~~PvvvaV~lLik~S~~~ 145 (149)
-++.|+.|.+..++|.+|-.++.
T Consensus 11 t~Lfi~iPt~FLlilYvqT~s~~ 33 (35)
T PRK04989 11 SLLFVLVPTVFLIILYIQTNSRE 33 (35)
T ss_pred HHHHHHHHHHHHHHHheeccccc
Confidence 45678899999999988877654
No 17
>PRK06840 hypothetical protein; Validated
Probab=24.21 E-value=26 Score=28.22 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=23.7
Q ss_pred Cccchhhhhhhhcccccceeeeeeccc
Q 031981 84 FEEDLSYLWKIGVGSFVGAAVIKYGSI 110 (149)
Q Consensus 84 ~~eDl~Yl~KL~aGSv~GAa~IKYGSi 110 (149)
.++|...++-.|+|.-.|+++++||++
T Consensus 312 ~~Gd~ill~~~G~G~s~~~~~l~~~~~ 338 (339)
T PRK06840 312 KDGDLVVLVSAGTGYTWAATVIRWGPV 338 (339)
T ss_pred CCCCEEEEEEEehhhheeEEEEEecCC
Confidence 467888888999999999999999975
No 18
>PRK13275 mtrF tetrahydromethanopterin S-methyltransferase subunit F; Provisional
Probab=24.10 E-value=91 Score=22.19 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031981 120 ISLALVMISTPVVLAVW 136 (149)
Q Consensus 120 i~lAL~mV~~PvvvaV~ 136 (149)
.++|++||..|++++.+
T Consensus 49 ~~~AlvLv~ip~~l~~~ 65 (67)
T PRK13275 49 FLLALLLVVVPPLLYGL 65 (67)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46899999999877643
No 19
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=23.37 E-value=65 Score=20.47 Aligned_cols=16 Identities=25% Similarity=0.679 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhccc
Q 031981 128 STPVVLAVWLLIKQSS 143 (149)
Q Consensus 128 ~~PvvvaV~lLik~S~ 143 (149)
-.|++|+++||.+..+
T Consensus 7 GFPi~va~yLL~R~E~ 22 (38)
T PF12841_consen 7 GFPIAVAIYLLVRIEK 22 (38)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 4699999999987653
No 20
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=22.45 E-value=1.1e+02 Score=25.95 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=19.3
Q ss_pred hHHH--HHHHHHHHHHHHHHHHHhcccc
Q 031981 119 NISL--ALVMISTPVVLAVWLLIKQSSS 144 (149)
Q Consensus 119 Ni~l--AL~mV~~PvvvaV~lLik~S~~ 144 (149)
++++ .+++++.|+.+.+.+++|..+.
T Consensus 262 d~~~~~~~~~~~~p~~~~~~~~~~~~s~ 289 (445)
T TIGR03025 262 DIVLSLLALLLLSPLMLAIALAIKLDSP 289 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3444 4456788999999999998753
No 21
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=22.07 E-value=1.2e+02 Score=25.96 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=18.9
Q ss_pred hHHHH--HHHHHHHHHHHHHHHHhccc
Q 031981 119 NISLA--LVMISTPVVLAVWLLIKQSS 143 (149)
Q Consensus 119 Ni~lA--L~mV~~PvvvaV~lLik~S~ 143 (149)
++++| +++++.|+.+++.++||.++
T Consensus 263 D~~~~~~~l~~~~p~~~~~a~~ikl~s 289 (456)
T TIGR03022 263 DLVLSLLALPLLLPLLLVIALLIRLDS 289 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45554 45667799999999999776
No 22
>TIGR02507 MtrF tetrahydromethanopterin S-methyltransferase, F subunit. coenzyme M methyltransferase in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methy-transfer reaction to drive sodium-ion pump. Archaea domain, have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=22.03 E-value=76 Score=22.58 Aligned_cols=15 Identities=13% Similarity=0.603 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHH
Q 031981 120 ISLALVMISTPVVLA 134 (149)
Q Consensus 120 i~lAL~mV~~Pvvva 134 (149)
.++|++||..|+++.
T Consensus 49 ~~~Al~lV~IP~ll~ 63 (65)
T TIGR02507 49 FLFAVLLVAVPIAMK 63 (65)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467999999998764
No 23
>PF14033 DUF4246: Protein of unknown function (DUF4246)
Probab=21.44 E-value=97 Score=28.24 Aligned_cols=63 Identities=25% Similarity=0.268 Sum_probs=42.6
Q ss_pred CcccccceeeecccCCCchhhhhccccccccCCCCCCccchhhhhhhhcccccceeeeeeccccccc---cCCchHHH
Q 031981 48 STSSIQRQFTTQASKDPQTEEQEESSIDDNAEDASTFEEDLSYLWKIGVGSFVGAAVIKYGSILFPE---ITRPNISL 122 (149)
Q Consensus 48 ~~s~~~~~~~~qas~dp~~eeq~~~s~ddn~~~~~~~~eDl~Yl~KL~aGSv~GAa~IKYGSil~P~---ITrPNi~l 122 (149)
|+..-+=.||.++. |+..++. ..-.++|..|+.++-...-.|.++--+||+..++ |+=||+.+
T Consensus 387 NIT~s~L~FR~~~~-d~~~~~~-----------~~~~q~~~~~~~~~~g~~~~~~~~q~~Gsv~~~~gr~i~fPN~~q 452 (501)
T PF14033_consen 387 NITESRLSFRQQTD-DPDLDQE-----------LSYEQDDHEWLERVFGIEDGGPAVQELGSVETKEGRLIAFPNTLQ 452 (501)
T ss_pred ccCCCceEeeeecc-Ccccccc-----------ccccccchhHHHHhcCCCCCccceEEcCcEEccCCcEEeccchhh
Confidence 44444558888885 4442211 1234677788888876666788999999998886 67788754
No 24
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=21.30 E-value=1.5e+02 Score=18.74 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=14.6
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 031981 118 PNISLALVMISTPVVLAVW 136 (149)
Q Consensus 118 PNi~lAL~mV~~PvvvaV~ 136 (149)
||++.|+++...=.+++=+
T Consensus 16 P~iv~AilIl~vG~~va~~ 34 (53)
T PF05552_consen 16 PNIVGAILILIVGWWVAKF 34 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8999999888776666544
No 25
>PF01115 F_actin_cap_B: F-actin capping protein, beta subunit; InterPro: IPR001698 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin (see IPR007122 from INTERPRO) and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta. Neither of the subunits shows sequence similarity to other filament-capping proteins []. The beta subunit is a protein of about 280 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0005737 cytoplasm, 0008290 F-actin capping protein complex; PDB: 3AAE_D 3LK4_Q 2KXP_B 2KZ7_B 3AA1_B 3LK2_B 3AA7_B 3AAA_B 1IZN_B 3AA0_B ....
Probab=20.16 E-value=30 Score=29.54 Aligned_cols=21 Identities=33% Similarity=0.697 Sum_probs=18.4
Q ss_pred hhhhhhhhcc-cccceeeeeec
Q 031981 88 LSYLWKIGVG-SFVGAAVIKYG 108 (149)
Q Consensus 88 l~Yl~KL~aG-Sv~GAa~IKYG 108 (149)
.+|||-+--+ .|||+.+||=.
T Consensus 119 SVYlWd~d~~~gFag~vLiKK~ 140 (242)
T PF01115_consen 119 SVYLWDLDDDDGFAGVVLIKKE 140 (242)
T ss_dssp EEEEEEETT--EEEEEEEEEEE
T ss_pred EEEEEecCCCcceeEEEEEEec
Confidence 5899999998 99999999976
Done!