Query 031981
Match_columns 149
No_of_seqs 15 out of 17
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 12:42:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031981.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031981hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j1r_A Archaeal adhesion filam 45.2 28 0.00096 20.4 3.4 21 120-140 4-24 (26)
2 3arc_Y Protein YCF12; PSII, me 44.2 23 0.00078 21.0 3.0 19 120-138 6-24 (29)
3 1jb0_M Photosystem 1 reaction 35.0 34 0.0012 20.4 2.8 24 114-137 2-25 (31)
4 3arc_M Photosystem II reaction 33.8 64 0.0022 19.9 4.0 26 121-146 9-34 (36)
5 3bz1_y Protein YCF12; electron 30.5 45 0.0015 21.6 3.0 19 120-138 23-41 (46)
6 2kv5_A FST, putative uncharact 30.1 42 0.0014 20.5 2.6 17 124-140 5-21 (33)
7 1a7j_A Phosphoribulokinase; tr 29.4 53 0.0018 25.3 3.8 43 85-134 240-282 (290)
8 2l9u_A Receptor tyrosine-prote 18.9 1.2E+02 0.0041 19.1 3.2 20 117-136 3-22 (40)
9 4efi_A 3-oxoacyl-(acyl-carrier 16.8 28 0.00095 27.5 -0.1 31 85-115 321-351 (354)
10 1jgn_B PAIP2, polyadenylate-bi 16.2 30 0.001 20.2 -0.0 8 105-112 17-24 (26)
No 1
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=45.17 E-value=28 Score=20.38 Aligned_cols=21 Identities=29% Similarity=0.291 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 031981 120 ISLALVMISTPVVLAVWLLIK 140 (149)
Q Consensus 120 i~lAL~mV~~PvvvaV~lLik 140 (149)
|+-++++|..-|+.+|++.+-
T Consensus 4 iVA~~lLIviav~aaVllylW 24 (26)
T 3j1r_A 4 VIATLLLILIAVAAAVLLYTW 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888999888764
No 2
>3arc_Y Protein YCF12; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3a0b_Y* 3a0h_Y*
Probab=44.18 E-value=23 Score=20.96 Aligned_cols=19 Identities=16% Similarity=0.424 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031981 120 ISLALVMISTPVVLAVWLL 138 (149)
Q Consensus 120 i~lAL~mV~~PvvvaV~lL 138 (149)
..++++++..|.|++.+.+
T Consensus 6 ~~l~lIv~aGP~VI~lLa~ 24 (29)
T 3arc_Y 6 TMIAMIGIAGPMIIFLLAV 24 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCChheeehhh
Confidence 3578899999988776544
No 3
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=34.98 E-value=34 Score=20.40 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=20.5
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHH
Q 031981 114 EITRPNISLALVMISTPVVLAVWL 137 (149)
Q Consensus 114 ~ITrPNi~lAL~mV~~PvvvaV~l 137 (149)
.|+..-|.+||++-++|-+.|+-|
T Consensus 2 ~Isd~Qi~iAL~~Al~~~iLA~rL 25 (31)
T 1jb0_M 2 ALTDTQVYVALVIALLPAVLAFRL 25 (31)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 477888999999999999988755
No 4
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=33.83 E-value=64 Score=19.91 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccc
Q 031981 121 SLALVMISTPVVLAVWLLIKQSSSVK 146 (149)
Q Consensus 121 ~lAL~mV~~PvvvaV~lLik~S~~~k 146 (149)
+--++.|+.|.+..++|.+|-.++.+
T Consensus 9 iAt~Lfi~iPt~FLlilYvqT~s~~~ 34 (36)
T 3arc_M 9 IATALFVLVPSVFLIILYVQTESQQK 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHhheeccccc
Confidence 34567789999999999999877653
No 5
>3bz1_y Protein YCF12; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 3bz2_y* 3kzi_y* 3prq_y* 3prr_y*
Probab=30.52 E-value=45 Score=21.58 Aligned_cols=19 Identities=16% Similarity=0.424 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031981 120 ISLALVMISTPVVLAVWLL 138 (149)
Q Consensus 120 i~lAL~mV~~PvvvaV~lL 138 (149)
..+|++++..|.|++.+..
T Consensus 23 ~~LalIv~aGPlVI~LLa~ 41 (46)
T 3bz1_y 23 TMIAMIGIAGPMIIFLLAV 41 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHhhhHHh
Confidence 4688999999988766543
No 6
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=30.15 E-value=42 Score=20.45 Aligned_cols=17 Identities=12% Similarity=0.401 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 031981 124 LVMISTPVVLAVWLLIK 140 (149)
Q Consensus 124 L~mV~~PvvvaV~lLik 140 (149)
++.|..|++|-|+|.+-
T Consensus 5 ~~~IIaPivVGvvl~L~ 21 (33)
T 2kv5_A 5 MSLVIAPIFVGLVLEMI 21 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56789999999888663
No 7
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=29.37 E-value=53 Score=25.32 Aligned_cols=43 Identities=30% Similarity=0.499 Sum_probs=32.9
Q ss_pred ccchhhhhhhhcccccceeeeeeccccccccCCchHHHHHHHHHHHHHHH
Q 031981 85 EEDLSYLWKIGVGSFVGAAVIKYGSILFPEITRPNISLALVMISTPVVLA 134 (149)
Q Consensus 85 ~eDl~Yl~KL~aGSv~GAa~IKYGSil~P~ITrPNi~lAL~mV~~Pvvva 134 (149)
.-|..||....-|||-. .--+++.|. ..+-+||-+|++|.+--
T Consensus 240 ~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~ 282 (290)
T 1a7j_A 240 GIDFPYLTSMIHGSWMS----RANSIVVPG---NKLDLAMQLILTPLIDR 282 (290)
T ss_dssp SCCHHHHHHHSTTCEEE----ETTEEEEEG---GGHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHhccccccc----CCceEEeeC---ccHHHHHHHHHHHHHHH
Confidence 45788999988888865 344666665 46889999999998754
No 8
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=18.95 E-value=1.2e+02 Score=19.10 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=13.8
Q ss_pred CchHHHHHHHHHHHHHHHHH
Q 031981 117 RPNISLALVMISTPVVLAVW 136 (149)
Q Consensus 117 rPNi~lAL~mV~~PvvvaV~ 136 (149)
+-.+..||+||..-+|+..+
T Consensus 3 ~thl~malt~i~gl~vif~~ 22 (40)
T 2l9u_A 3 RTHLTMALTVIAGLVVIFMM 22 (40)
T ss_dssp STHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45678899998776655443
No 9
>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.35A {Burkholderia xenovorans}
Probab=16.85 E-value=28 Score=27.46 Aligned_cols=31 Identities=19% Similarity=0.227 Sum_probs=26.4
Q ss_pred ccchhhhhhhhcccccceeeeeecccccccc
Q 031981 85 EEDLSYLWKIGVGSFVGAAVIKYGSILFPEI 115 (149)
Q Consensus 85 ~eDl~Yl~KL~aGSv~GAa~IKYGSil~P~I 115 (149)
.+|..-+.-.|+|.-.|+++++++.+.+|++
T Consensus 321 ~Gd~vll~~fG~G~t~~~~ll~~~~~~~~~~ 351 (354)
T 4efi_A 321 ETLQLGMFGFGVGYSWASAALAVGPLNIVDT 351 (354)
T ss_dssp SCEEEEEEEEETTTEEEEEEEEECCCSCEEE
T ss_pred CCCEEEEEEEchhhhheeeEEEECCcccccc
Confidence 3577778888999999999999999988875
No 10
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=16.23 E-value=30 Score=20.18 Aligned_cols=8 Identities=50% Similarity=1.061 Sum_probs=4.9
Q ss_pred eeeccccc
Q 031981 105 IKYGSILF 112 (149)
Q Consensus 105 IKYGSil~ 112 (149)
+|||+|..
T Consensus 17 vkygni~~ 24 (26)
T 1jgn_B 17 VKYGNIXX 24 (26)
T ss_dssp SCTTCC--
T ss_pred ceecceec
Confidence 68888753
Done!