Query 031981
Match_columns 149
No_of_seqs 15 out of 17
Neff 1.9
Searched_HMMs 13730
Date Mon Mar 25 12:43:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031981.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031981hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ub7a2 c.95.1.2 (A:174-322) K 39.9 2.8 0.0002 28.2 -0.1 26 84-109 123-148 (149)
2 d2axtm1 f.23.35.1 (M:1-36) Pho 39.1 17 0.0012 21.2 3.4 25 122-146 10-34 (36)
3 d1a7ja_ c.37.1.6 (A:) Phosphor 30.0 25 0.0018 26.6 4.1 43 85-134 239-281 (288)
4 d1iznb_ e.43.1.2 (B:) Capz bet 12.6 19 0.0014 28.2 -0.3 19 88-107 117-135 (270)
5 d1r5sa_ f.50.1.1 (A:) Gap junc 12.5 99 0.0072 21.7 3.7 60 38-97 37-100 (132)
6 d2v33a1 b.1.18.4 (A:293-382) F 12.4 33 0.0024 23.1 1.0 10 99-108 20-29 (90)
7 d1okca_ f.42.1.1 (A:) ADP,ATP 10.3 20 0.0015 24.3 -0.7 20 85-104 1-20 (292)
8 d1hnja2 c.95.1.2 (A:175-317) K 9.5 29 0.0021 22.8 -0.1 24 84-107 120-143 (143)
9 d1xmec1 f.23.9.1 (C:2-34) Bact 8.7 1.8E+02 0.013 16.2 3.2 21 117-137 3-23 (33)
10 d1jb0m_ f.23.19.1 (M:) Subunit 8.2 1.6E+02 0.011 16.3 2.8 22 116-137 4-25 (31)
No 1
>d1ub7a2 c.95.1.2 (A:174-322) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]}
Probab=39.86 E-value=2.8 Score=28.23 Aligned_cols=26 Identities=35% Similarity=0.424 Sum_probs=23.4
Q ss_pred Cccchhhhhhhhcccccceeeeeecc
Q 031981 84 FEEDLSYLWKIGVGSFVGAAVIKYGS 109 (149)
Q Consensus 84 ~~eDl~Yl~KL~aGSv~GAa~IKYGS 109 (149)
.+.|..-+.-.|+|-..||++++||=
T Consensus 123 ~~Gd~vll~g~G~G~s~ga~llrw~g 148 (149)
T d1ub7a2 123 REGDHVLLVSFGAGLTWAAAVLTWGG 148 (149)
T ss_dssp CTTCEEEEEEEETTTEEEEEEEECCC
T ss_pred CCCCEEEEEEEchHhhhEEEEEEECC
Confidence 57889999999999999999999983
No 2
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=39.15 E-value=17 Score=21.20 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccc
Q 031981 122 LALVMISTPVVLAVWLLIKQSSSVK 146 (149)
Q Consensus 122 lAL~mV~~PvvvaV~lLik~S~~~k 146 (149)
-.++.|+.|.+..++|.+|-.++.+
T Consensus 10 At~LFilvPt~FLliLyvqT~s~~~ 34 (36)
T d2axtm1 10 ATALFVLVPSVFLIILYVQTESQQK 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHhheeeccccc
Confidence 3466789999999999998877653
No 3
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=30.01 E-value=25 Score=26.59 Aligned_cols=43 Identities=30% Similarity=0.467 Sum_probs=33.5
Q ss_pred ccchhhhhhhhcccccceeeeeeccccccccCCchHHHHHHHHHHHHHHH
Q 031981 85 EEDLSYLWKIGVGSFVGAAVIKYGSILFPEITRPNISLALVMISTPVVLA 134 (149)
Q Consensus 85 ~eDl~Yl~KL~aGSv~GAa~IKYGSil~P~ITrPNi~lAL~mV~~Pvvva 134 (149)
.-|+.||....-|||- ..--++++|.. +..+||=+|++|.+.-
T Consensus 239 ~~d~~~l~~~~~~s~~----s~~~~~v~p~~---~~~~~m~~i~~p~~~~ 281 (288)
T d1a7ja_ 239 GIDFPYLTSMIHGSWM----SRANSIVVPGN---KLDLAMQLILTPLIDR 281 (288)
T ss_dssp SCCHHHHHHHSTTCEE----EETTEEEEEGG---GHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHhhccccc----cCCceEEECCh---hHHHHHHHHHHHHHHH
Confidence 3489999999999883 34456677754 5889999999998754
No 4
>d1iznb_ e.43.1.2 (B:) Capz beta-1 subunit {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=12.59 E-value=19 Score=28.19 Aligned_cols=19 Identities=37% Similarity=0.793 Sum_probs=16.3
Q ss_pred hhhhhhhhcccccceeeeee
Q 031981 88 LSYLWKIGVGSFVGAAVIKY 107 (149)
Q Consensus 88 l~Yl~KL~aGSv~GAa~IKY 107 (149)
.+|+|-|- ..|||+.+||=
T Consensus 117 SVYlWdld-~gFag~vliKK 135 (270)
T d1iznb_ 117 SVYLWDLD-HGFAGVILIKK 135 (270)
T ss_dssp EEEEEECS-SEEEEEEEEEE
T ss_pred eEEEEecC-CCceEEEEEEe
Confidence 58999995 56999999997
No 5
>d1r5sa_ f.50.1.1 (A:) Gap junction alpha-1 protein, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=12.47 E-value=99 Score=21.72 Aligned_cols=60 Identities=23% Similarity=0.289 Sum_probs=44.8
Q ss_pred EEeeeCCCCCCcccccceeeecccCCCchhh----hhccccccccCCCCCCccchhhhhhhhcc
Q 031981 38 KFLIKTPNHSSTSSIQRQFTTQASKDPQTEE----QEESSIDDNAEDASTFEEDLSYLWKIGVG 97 (149)
Q Consensus 38 kF~~~~p~~s~~s~~~~~~~~qas~dp~~ee----q~~~s~ddn~~~~~~~~eDl~Yl~KL~aG 97 (149)
|.++..++.++|....++-..|.|.|-.+|+ |..+-+.+.-...|.+.||.+---|+.+|
T Consensus 37 kl~t~~r~~sscrnynkqa~eqnwanys~EQnrlGqagstisnsHaQ~Fd~pd~~~~~Kk~~~~ 100 (132)
T d1r5sa_ 37 KLVTGDRNNSSCRNYNKQASEQNWANYSAEQNRMGQAGSTISNSHAQPFDFPDDNQNAKKVAAG 100 (132)
T ss_dssp CSCTTCCSSCSSSSCCCCSCSCSSCCTTCCHHHHHHHHHTCCCSCCCSCCCTTSSHHHHHHHTT
T ss_pred eeeecccCccchhhhhhhhhhhhhhhhhHHHhhhccccccccccccccCCCccchhhhhhcccc
Confidence 4555558888999998999999997776654 44556656666678889998888887765
No 6
>d2v33a1 b.1.18.4 (A:293-382) Fusion glycoprotein E1 {Semliki forest virus [TaxId: 11033]}
Probab=12.35 E-value=33 Score=23.08 Aligned_cols=10 Identities=30% Similarity=0.627 Sum_probs=9.0
Q ss_pred ccceeeeeec
Q 031981 99 FVGAAVIKYG 108 (149)
Q Consensus 99 v~GAa~IKYG 108 (149)
|||.|.|||-
T Consensus 20 fGGvatl~Y~ 29 (90)
T d2v33a1 20 FGGVLTLTYK 29 (90)
T ss_dssp EEEEEEEEEE
T ss_pred cCCeEEEEEe
Confidence 8999999994
No 7
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]}
Probab=10.32 E-value=20 Score=24.29 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=14.8
Q ss_pred ccchhhhhhhhcccccceee
Q 031981 85 EEDLSYLWKIGVGSFVGAAV 104 (149)
Q Consensus 85 ~eDl~Yl~KL~aGSv~GAa~ 104 (149)
++|+.|+-.+.+|+++|++.
T Consensus 1 ~~~~~~~~~~laG~~a~~i~ 20 (292)
T d1okca_ 1 DQALSFLKDFLAGGVAAAIS 20 (292)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHH
Confidence 45778888888888877653
No 8
>d1hnja2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]}
Probab=9.50 E-value=29 Score=22.78 Aligned_cols=24 Identities=25% Similarity=0.345 Sum_probs=20.9
Q ss_pred Cccchhhhhhhhcccccceeeeee
Q 031981 84 FEEDLSYLWKIGVGSFVGAAVIKY 107 (149)
Q Consensus 84 ~~eDl~Yl~KL~aGSv~GAa~IKY 107 (149)
.+.|..-+.-.|+|.-.|+++++|
T Consensus 120 ~~Gd~vll~g~G~G~s~g~~llrw 143 (143)
T d1hnja2 120 KPGQLVLLEAFGGGFTWGSALVRF 143 (143)
T ss_dssp CTTCEEEEEEEETTTEEEEEEEEC
T ss_pred CCCCEEEEEEEehhhhhEEEEEEC
Confidence 467888888899999999999987
No 9
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=8.70 E-value=1.8e+02 Score=16.19 Aligned_cols=21 Identities=33% Similarity=0.770 Sum_probs=13.5
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 031981 117 RPNISLALVMISTPVVLAVWL 137 (149)
Q Consensus 117 rPNi~lAL~mV~~PvvvaV~l 137 (149)
.|-..++.++|++-++...|+
T Consensus 3 kp~gal~vi~il~l~ilvfw~ 23 (33)
T d1xmec1 3 KPKGALAVILVLTLTILVFWL 23 (33)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHH
Confidence 466777777777766655443
No 10
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=8.16 E-value=1.6e+02 Score=16.28 Aligned_cols=22 Identities=41% Similarity=0.517 Sum_probs=16.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHH
Q 031981 116 TRPNISLALVMISTPVVLAVWL 137 (149)
Q Consensus 116 TrPNi~lAL~mV~~PvvvaV~l 137 (149)
+.-.+.+||.+-++|-+.|.-|
T Consensus 4 sdtqv~valvial~pg~lafrl 25 (31)
T d1jb0m_ 4 TDTQVYVALVIALLPAVLAFRL 25 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788999999998887644
Done!