BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031982
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 167 bits (424), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 77/127 (60%), Positives = 92/127 (72%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
D+ + PV GFSAGLVD+ +I++W V +IGPPDTLYEGGFF AI+ FP +YP PP +KF
Sbjct: 14 DMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFI 73
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
+EIWHPN+ +G VCISILH PGDD GYE ERW+PVHTVE PN ES
Sbjct: 74 SEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFES 133
Query: 136 PANVEAA 142
PANV+AA
Sbjct: 134 PANVDAA 140
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 161 bits (408), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 75/130 (57%), Positives = 92/130 (70%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
+L KNPV GFSAGL+D+ +++ W V IIGPPDTLYEGG F A ++FP +YP PP +KF
Sbjct: 28 ELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFI 87
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
TEIWHPNV +G VCISILH PG+D GYE ERW+P+HTVE PN +S
Sbjct: 88 TEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDS 147
Query: 136 PANVEAAVSY 145
PANV+AA +
Sbjct: 148 PANVDAAKEW 157
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 149 bits (376), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 73/132 (55%), Positives = 89/132 (67%), Gaps = 2/132 (1%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
L NP G AG ++E N FEW I+GP DT +E G F AI+SFP +YP SPP ++FT
Sbjct: 14 QLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFT 73
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
E++HPN+YPDGRVCISILH PGDDP GYE ++ERW PV +VE PNDES
Sbjct: 74 CEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDES 133
Query: 136 PANVEAAVSYLW 147
ANV+A S +W
Sbjct: 134 GANVDA--SKMW 143
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 149 bits (375), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 73/132 (55%), Positives = 89/132 (67%), Gaps = 2/132 (1%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
L NP G AG ++E N FEW I+GP DT +E G F AI+SFP +YP SPP ++FT
Sbjct: 20 QLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFT 79
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
E++HPN+YPDGRVCISILH PGDDP GYE ++ERW PV +VE PNDES
Sbjct: 80 CEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDES 139
Query: 136 PANVEAAVSYLW 147
ANV+A S +W
Sbjct: 140 GANVDA--SKMW 149
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 149 bits (375), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 73/132 (55%), Positives = 89/132 (67%), Gaps = 2/132 (1%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
L NP G AG ++E N FEW I+GP DT +E G F AI+SFP +YP SPP ++FT
Sbjct: 17 QLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFT 76
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
E++HPN+YPDGRVCISILH PGDDP GYE ++ERW PV +VE PNDES
Sbjct: 77 CEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDES 136
Query: 136 PANVEAAVSYLW 147
ANV+A S +W
Sbjct: 137 GANVDA--SKMW 146
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 149 bits (375), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 73/132 (55%), Positives = 89/132 (67%), Gaps = 2/132 (1%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
L NP G AG ++E N FEW I+GP DT +E G F AI+SFP +YP SPP ++FT
Sbjct: 18 QLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFT 77
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
E++HPN+YPDGRVCISILH PGDDP GYE ++ERW PV +VE PNDES
Sbjct: 78 CEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDES 137
Query: 136 PANVEAAVSYLW 147
ANV+A S +W
Sbjct: 138 GANVDA--SKMW 147
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 141 bits (356), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 81/129 (62%)
Query: 17 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTT 76
L + PV GF LVDE +++ W V I GPP+T YEGG+F A + FP +YP SPP +F T
Sbjct: 19 LQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLT 78
Query: 77 EIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESP 136
++WHPN+Y G VCISILHPP DDP EL SERW P V PN SP
Sbjct: 79 KMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSP 138
Query: 137 ANVEAAVSY 145
ANV+A+V Y
Sbjct: 139 ANVDASVMY 147
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 141 bits (355), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 81/129 (62%)
Query: 17 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTT 76
L + PV GF LVDE +++ W V I GPP+T YEGG+F A + FP +YP SPP +F T
Sbjct: 16 LQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLT 75
Query: 77 EIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESP 136
++WHPN+Y G VCISILHPP DDP EL SERW P V PN SP
Sbjct: 76 KMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSP 135
Query: 137 ANVEAAVSY 145
ANV+A+V Y
Sbjct: 136 ANVDASVMY 144
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 135 bits (341), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 80/132 (60%), Gaps = 2/132 (1%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
L K+ G AG E NIF W I GPPDT Y G FNA + FP +YP SPP + FT
Sbjct: 15 QLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFT 74
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
I HPN+YP+G VCISILH PGDDPN YELA ERW PV +VE PN ES
Sbjct: 75 PSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIES 134
Query: 136 PANVEAAVSYLW 147
AN++A + LW
Sbjct: 135 GANIDACI--LW 144
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 90.5 bits (223), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 66/129 (51%), Gaps = 14/129 (10%)
Query: 17 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTT 76
L ++P AG S G + NI W+ I GP DT ++GG F + F +YPN PPTV+F +
Sbjct: 16 LQQDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVS 74
Query: 77 EIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESP 136
++HPN+Y DG +C+ IL +W P++ V PN SP
Sbjct: 75 RMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSP 121
Query: 137 ANVEAAVSY 145
AN EAA Y
Sbjct: 122 ANSEAARMY 130
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 64/129 (49%), Gaps = 14/129 (10%)
Query: 17 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTT 76
L ++P G S G E NI +W+ I GP T +E G F ++ F YPN PPTV+F +
Sbjct: 16 LQEDPPVGVS-GAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLS 74
Query: 77 EIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESP 136
+++HPNVY DG +C+ IL RW P + V PN SP
Sbjct: 75 KMFHPNVYADGSICLDILQ-------------NRWSPTYDVSSILTSIQSLLDEPNPNSP 121
Query: 137 ANVEAAVSY 145
AN +AA Y
Sbjct: 122 ANSQAAQLY 130
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 57/112 (50%), Gaps = 13/112 (11%)
Query: 34 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISI 93
N+ W+ IIGP DT YE G F ++ F YPN PP VKF +E++HPNVY +G +C+ I
Sbjct: 32 NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDI 91
Query: 94 LHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAVSY 145
L RW P + V PN SPANVEAA +
Sbjct: 92 LQ-------------NRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLF 130
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 62/129 (48%), Gaps = 14/129 (10%)
Query: 17 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTT 76
L ++P AG S G E NI W I GP +T +E G F + F YPN PPTVKF +
Sbjct: 16 LQEDPPAGVS-GAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFIS 74
Query: 77 EIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESP 136
+++HPNVY DG +C+ IL RW P + V PN SP
Sbjct: 75 KMFHPNVYADGSICLDILQ-------------NRWSPTYDVAAILTSIQSLLDEPNPNSP 121
Query: 137 ANVEAAVSY 145
AN AA Y
Sbjct: 122 ANSLAAQLY 130
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 86.7 bits (213), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 62/129 (48%), Gaps = 14/129 (10%)
Query: 17 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTT 76
L ++P AG S G E NI W I GP +T +E G F + F YPN PPTVKF +
Sbjct: 19 LQEDPPAGVS-GAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFIS 77
Query: 77 EIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESP 136
+++HPNVY DG +C+ IL RW P + V PN SP
Sbjct: 78 KMFHPNVYADGSICLDILQ-------------NRWSPTYDVAAILTSIQSLLDEPNPNSP 124
Query: 137 ANVEAAVSY 145
AN AA Y
Sbjct: 125 ANSLAAQLY 133
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 67/130 (51%), Gaps = 14/130 (10%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL ++P A SAG V + ++F W TI+GPPD+ Y+GG F + FP++YP PP + FT
Sbjct: 30 DLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFT 88
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T+I+HPN+ +G +C+ IL +W P TV PN +
Sbjct: 89 TKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDD 135
Query: 136 PANVEAAVSY 145
P + A Y
Sbjct: 136 PLVPDIAQIY 145
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 67/130 (51%), Gaps = 14/130 (10%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL ++P A SAG V + ++F W TI+GPPD+ Y+GG F + FP++YP PP + FT
Sbjct: 14 DLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFT 72
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T+I+HPN+ +G +C+ IL +W P TV PN +
Sbjct: 73 TKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDD 119
Query: 136 PANVEAAVSY 145
P + A Y
Sbjct: 120 PLVPDIAQIY 129
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 67/130 (51%), Gaps = 14/130 (10%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL ++P A SAG V + ++F W TI+GPPD+ Y+GG F + FP++YP PP + FT
Sbjct: 18 DLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFT 76
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T+I+HPN+ +G +C+ IL +W P TV PN +
Sbjct: 77 TKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDD 123
Query: 136 PANVEAAVSY 145
P + A Y
Sbjct: 124 PLVPDIAQIY 133
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 82.4 bits (202), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL ++P A SAG V + ++F W TI+GPP++ Y+GG F + FP++YP PP V FT
Sbjct: 15 DLGRDPPAQCSAGPVGD-DLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFT 73
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T I+HPN+ +G +C+ IL +W P T+ PN +
Sbjct: 74 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 120
Query: 136 PANVEAAVSY 145
P E A Y
Sbjct: 121 PLVPEIARIY 130
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 31 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVC 90
D N+F+W T+ GP DT+YE + + FPS+YP PP VKFTT WHPNV G +C
Sbjct: 34 DGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNIC 93
Query: 91 ISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAA 142
+ IL E W + V PN+ SP N +AA
Sbjct: 94 LDIL-------------KENWTASYDVRTILLSLQSLLGEPNNASPLNAQAA 132
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL ++P A SAG V + ++F W TI+GP D+ Y+GG F + FP++YP PP V FT
Sbjct: 30 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 88
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T I+HPN+ +G +C+ IL +W P T+ PN +
Sbjct: 89 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 135
Query: 136 PANVEAAVSY 145
P E A Y
Sbjct: 136 PLVPEIARIY 145
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL ++P A SAG V + ++F W TI+GP D+ Y+GG F + FP++YP PP V FT
Sbjct: 14 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T I+HPN+ +G +C+ IL +W P T+ PN +
Sbjct: 73 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 119
Query: 136 PANVEAAVSY 145
P E A Y
Sbjct: 120 PLVPEIARIY 129
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL ++P A SAG V + ++F W TI+GP D+ Y+GG F + FP++YP PP V FT
Sbjct: 20 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 78
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T I+HPN+ +G +C+ IL +W P T+ PN +
Sbjct: 79 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 125
Query: 136 PANVEAAVSY 145
P E A Y
Sbjct: 126 PLVPEIARIY 135
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL ++P A SAG V + ++F W TI+GP D+ Y+GG F + FP++YP PP V FT
Sbjct: 22 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 80
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T I+HPN+ +G +C+ IL +W P T+ PN +
Sbjct: 81 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 127
Query: 136 PANVEAAVSY 145
P E A Y
Sbjct: 128 PLVPEIARIY 137
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL ++P A SAG V + ++F W TI+GP D+ Y+GG F + FP++YP PP V FT
Sbjct: 14 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T I+HPN+ +G +C+ IL +W P T+ PN +
Sbjct: 73 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 119
Query: 136 PANVEAAVSY 145
P E A Y
Sbjct: 120 PLVPEIARIY 129
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL ++P A SAG V + ++F W TI+GP D+ Y+GG F + FP++YP PP V FT
Sbjct: 11 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 69
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T I+HPN+ +G +C+ IL +W P T+ PN +
Sbjct: 70 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 116
Query: 136 PANVEAAVSY 145
P E A Y
Sbjct: 117 PLVPEIARIY 126
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL ++P A SAG V + ++F W TI+GP D+ Y+GG F + FP++YP PP V FT
Sbjct: 17 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 75
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T I+HPN+ +G +C+ IL +W P T+ PN +
Sbjct: 76 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 122
Query: 136 PANVEAAVSY 145
P E A Y
Sbjct: 123 PLVPEIARIY 132
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL ++P A SAG V + ++F W TI+GP D+ Y+GG F + FP++YP PP V FT
Sbjct: 14 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T I+HPN+ +G +C+ IL +W P T+ PN +
Sbjct: 73 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 119
Query: 136 PANVEAAVSY 145
P E A Y
Sbjct: 120 PLVPEIARIY 129
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL ++P A SAG V + ++F W TI+GP D+ Y+GG F + FP++YP PP V FT
Sbjct: 12 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 70
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T I+HPN+ +G +C+ IL +W P T+ PN +
Sbjct: 71 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 117
Query: 136 PANVEAAVSY 145
P E A Y
Sbjct: 118 PLVPEIARIY 127
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL ++P A SAG V + ++F W TI+GP D+ Y+GG F + FP++YP PP V FT
Sbjct: 22 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 80
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T I+HPN+ +G +C+ IL +W P T+ PN +
Sbjct: 81 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 127
Query: 136 PANVEAAVSY 145
P E A Y
Sbjct: 128 PLVPEIARIY 137
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL ++P A SAG V + ++F W TI+GP D+ Y+GG F + FP++YP PP V FT
Sbjct: 14 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T I+HPN+ +G +C+ IL +W P T+ PN +
Sbjct: 73 TRIYHPNINSNGSICLDILR-------------SQWGPALTISKVLLSICSLLCDPNPDD 119
Query: 136 PANVEAAVSY 145
P E A Y
Sbjct: 120 PLVPEIARIY 129
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 63/121 (52%), Gaps = 14/121 (11%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL ++P A SAG V + ++F W TI+GP D+ Y+GG F + FP++YP PP V FT
Sbjct: 17 DLQRDPPAQCSAGPVGD-DLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 75
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T+I+HPN+ +G +C+ IL +W P TV PN +
Sbjct: 76 TKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDD 122
Query: 136 P 136
P
Sbjct: 123 P 123
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL K+P + SAG V + ++F W TI+GP D+ Y GG F + FP++YP PP V FT
Sbjct: 12 DLGKDPPSSSSAGPVGD-DLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFT 70
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T I+HPN+ +G +C+ IL ++W P T+ PN +
Sbjct: 71 TRIYHPNINSNGSICLDILR-------------DQWSPALTISKVLLSISSLLTDPNPDD 117
Query: 136 PANVEAAVSY 145
P E A Y
Sbjct: 118 PLVPEIAHVY 127
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 64/130 (49%), Gaps = 14/130 (10%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL K+P SAG V + ++F W TI+GP D+ Y GG F + FPS+YP PP V FT
Sbjct: 32 DLSKDPPTNCSAGPVGD-DMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFT 90
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T+I+HPN+ G +C+ IL ++W P T+ PN +
Sbjct: 91 TKIYHPNINSQGAICLDIL-------------KDQWSPALTISKVLLSISSLLTDPNPDD 137
Query: 136 PANVEAAVSY 145
P E A Y
Sbjct: 138 PLVPEIAHLY 147
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 79.3 bits (194), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 20 NPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIW 79
P GL ++ W V I G P T +EGG + M+FP YP PP +FT ++
Sbjct: 33 KPCKSSDGGL----DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLF 88
Query: 80 HPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANV 139
HPNVYP G VC+SIL+ E W P T++ PN SPA
Sbjct: 89 HPNVYPSGTVCLSILN-----------EEEGWKPAITIKQILLGIQDLLDDPNIASPAQT 137
Query: 140 EAAVSY 145
EA +
Sbjct: 138 EAYTMF 143
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 79.3 bits (194), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 64/130 (49%), Gaps = 14/130 (10%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL ++P A SAG V + ++F W TI+GP D+ Y+GG F + FP++YP PP V FT
Sbjct: 14 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T I+HPN+ +G +C+ L +W P T+ PN +
Sbjct: 73 TRIYHPNINSNGSICLDALR-------------SQWSPALTISKVLLSICSLLCDPNPDD 119
Query: 136 PANVEAAVSY 145
P E A Y
Sbjct: 120 PLVPEIARIY 129
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 79.3 bits (194), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 64/130 (49%), Gaps = 14/130 (10%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL ++P A SAG V + ++F W T +GP D+ Y+GG F + FP++YP PP V FT
Sbjct: 14 DLARDPPAQCSAGPVGD-DMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T I+HPN+ +G +C+ IL +W P T+ PN +
Sbjct: 73 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 119
Query: 136 PANVEAAVSY 145
P E A Y
Sbjct: 120 PLVPEIARIY 129
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL ++P A AG V + ++F W TI+GPPD+ Y+GG F + FP++YP PP + FT
Sbjct: 18 DLQRDPPAHCRAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFT 76
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T+I+HPN+ +G + + IL +W P TV PN +
Sbjct: 77 TKIYHPNINSNGSIKLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDD 123
Query: 136 PANVEAAVSY 145
P + A Y
Sbjct: 124 PLVPDIAQIY 133
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 64/130 (49%), Gaps = 14/130 (10%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL ++P A SAG V + ++F W TI+GP D+ Y+GG F + FP++YP PP V FT
Sbjct: 12 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 70
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T I+HPN+ +G + + IL +W P T+ PN +
Sbjct: 71 TRIYHPNINSNGSISLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 117
Query: 136 PANVEAAVSY 145
P E A Y
Sbjct: 118 PLVPEIARIY 127
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 64/130 (49%), Gaps = 14/130 (10%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL ++P A SAG V + ++F W TI+GP D+ Y+GG F + FP++YP PP V FT
Sbjct: 15 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 73
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T I+HPN+ +G + + IL +W P T+ PN +
Sbjct: 74 TRIYHPNINSNGSISLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 120
Query: 136 PANVEAAVSY 145
P E A Y
Sbjct: 121 PLVPEIARIY 130
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 64/130 (49%), Gaps = 14/130 (10%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL ++P A SAG V + ++F W TI+GP D+ Y+GG F + FP++YP PP V FT
Sbjct: 30 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 88
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T I+HPN+ +G + + IL +W P T+ PN +
Sbjct: 89 TRIYHPNINSNGSIXLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 135
Query: 136 PANVEAAVSY 145
P E A Y
Sbjct: 136 PLVPEIARIY 145
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 34 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISI 93
N+ W I G T +EGG F M F +YP+SPP KF ++HPNVYP G VC+SI
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 94 LHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAVSY 145
L D W P T++ PN +SPA EA Y
Sbjct: 100 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIY 140
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL ++P A SAG V + ++F W TI+GP D+ Y+GG F + FP++YP PP V FT
Sbjct: 14 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76 TEIWHPNVYPDGRVCISILH 95
T I+HPN+ +G + + IL
Sbjct: 73 TRIYHPNINSNGSISLDILR 92
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 75.9 bits (185), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 34 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISI 93
N+ W I G T +EGG F M F +YP+SPP KF ++HPNVYP G VC+SI
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 94 LHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAVSY 145
L D W P T++ PN ++PA EA Y
Sbjct: 100 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQAPAQAEAYTIY 140
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 75.9 bits (185), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL ++P A SAG V + ++F W TI+GP D+ Y+GG F + FP++YP PP V FT
Sbjct: 11 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 69
Query: 76 TEIWHPNVYPDGRVCISILH 95
T I+HPN+ +G + + IL
Sbjct: 70 TRIYHPNINSNGSISLDILR 89
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 51/112 (45%), Gaps = 11/112 (9%)
Query: 34 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISI 93
N+ W I G T +EGG F M F +YP+SPP KF ++HPNVYP G VC+SI
Sbjct: 39 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 98
Query: 94 LHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAVSY 145
L D W P T++ PN + PA EA Y
Sbjct: 99 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIY 139
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 51/112 (45%), Gaps = 11/112 (9%)
Query: 34 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISI 93
N+ W I G T +EGG F M F +YP+SPP KF ++HPNVYP G VC+SI
Sbjct: 39 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 98
Query: 94 LHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAVSY 145
L D W P T++ PN + PA EA Y
Sbjct: 99 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIY 139
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 51/112 (45%), Gaps = 11/112 (9%)
Query: 34 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISI 93
N+ W I G T +EGG F M F +YP+SPP KF ++HPNVYP G VC+SI
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 96
Query: 94 LHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAVSY 145
L D W P T++ PN + PA EA Y
Sbjct: 97 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIY 137
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 51/112 (45%), Gaps = 11/112 (9%)
Query: 34 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISI 93
N+ W I G T +EGG F M F +YP+SPP KF ++HPNVYP G VC+SI
Sbjct: 38 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 97
Query: 94 LHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAVSY 145
L D W P T++ PN + PA EA Y
Sbjct: 98 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIY 138
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 51/112 (45%), Gaps = 11/112 (9%)
Query: 34 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISI 93
N+ W I G T +EGG F M F +YP+SPP KF ++HPNVYP G VC+SI
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 94 LHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAVSY 145
L D W P T++ PN + PA EA Y
Sbjct: 100 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIY 140
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 51/112 (45%), Gaps = 11/112 (9%)
Query: 34 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISI 93
N+ W I G T +EGG F M F +YP+SPP KF ++HPNVYP G VC+SI
Sbjct: 42 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 101
Query: 94 LHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAVSY 145
L D W P T++ PN + PA EA Y
Sbjct: 102 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIY 142
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL ++P SAG V + +++ W +I+GP D+ Y GG F + FP++YP PP + FT
Sbjct: 13 DLERDPPTSCSAGPVGD-DLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFT 71
Query: 76 TEIWHPNVYPDGRVCISIL 94
T+I+HPN+ +G +C+ IL
Sbjct: 72 TKIYHPNINANGNICLDIL 90
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 34 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISI 93
N+ W I G T +EGG F M F +YP+SPP KF ++HP VYP G VC+SI
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSI 99
Query: 94 LHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAVSY 145
L D W P T++ PN + PA EA Y
Sbjct: 100 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIY 140
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL ++P A AG V + ++F W TI+GP D+ Y+GG F + FP++YP PP V FT
Sbjct: 12 DLARDPPAQCRAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 70
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T I+HP + +G + + IL +W P T+ PN +
Sbjct: 71 TRIYHPAINSNGSISLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 117
Query: 136 PANVEAAVSY 145
P E A Y
Sbjct: 118 PLVPEIARIY 127
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 34 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISI 93
N+ W I G T +EGG F M F +YP+SPP KF ++HPNV P G VC+SI
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSI 99
Query: 94 LHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAVSY 145
L D W P T++ PN + PA EA Y
Sbjct: 100 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIY 140
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 14/117 (11%)
Query: 30 VDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPD-GR 88
+ ++N FEW I GP T YEGG F ++ P++YP +PP +KF T+IWHPN+ G
Sbjct: 47 IKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGA 106
Query: 89 VCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAVSY 145
+C+ +L W P T+ P + P + E A Y
Sbjct: 107 ICLDVL-------------KNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMY 150
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 34 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISI 93
N+ W I G T +EGG F M F +YP+SPP KF ++HPNVYP G V +SI
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSI 96
Query: 94 LHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAVSY 145
L D W P T++ PN + PA EA Y
Sbjct: 97 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIY 137
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 34 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISI 93
N+ W I G T +EGG F M F +YP+SPP KF ++HPNVYP G V +SI
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSI 96
Query: 94 LHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAVSY 145
L D W P T++ PN + PA EA Y
Sbjct: 97 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIY 137
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 14/127 (11%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
++ ++P SAG V + +IF W+ TI GP D+ Y+GG F + FP +YP P V F
Sbjct: 15 EIQQDPPCNCSAGPVGD-DIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFM 73
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T+++HPN+ +G +C+ IL ++W P T+ PN
Sbjct: 74 TKVYHPNINKNGVICLDIL-------------KDQWSPALTLSRVLLSISSLLTDPNPSD 120
Query: 136 PANVEAA 142
P + E A
Sbjct: 121 PLDPEVA 127
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 17 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTT 76
L PV G A DE+N + V I GP D+ +EGG F + P YP + P V+F T
Sbjct: 13 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 71
Query: 77 EIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESP 136
+I+HPNV GR+C+ IL ++W P + PN + P
Sbjct: 72 KIYHPNVDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDP 118
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 17 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTT 76
L PV G A DE+N + V I GP D+ +EGG F + P YP + P V+F T
Sbjct: 17 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 75
Query: 77 EIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESP 136
+I+HPNV GR+C+ IL ++W P + PN + P
Sbjct: 76 KIYHPNVDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDP 122
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 17 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTT 76
L PV G A DE+N + V I GP D+ +EGG F + P YP + P V+F T
Sbjct: 15 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 73
Query: 77 EIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESP 136
+I+HPNV GR+C+ IL ++W P + PN + P
Sbjct: 74 KIYHPNVDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDP 120
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 17 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTT 76
L PV G A DE+N + V I GP D+ +EGG F + P YP + P V+F T
Sbjct: 20 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 78
Query: 77 EIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESP 136
+I+HPNV GR+C+ IL ++W P + PN + P
Sbjct: 79 KIYHPNVDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDP 125
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 17 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTT 76
L PV G A DE+N + V I GP D+ +EGG F + P YP + P V+F T
Sbjct: 18 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 76
Query: 77 EIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESP 136
+I+HPNV GR+C+ IL ++W P + PN + P
Sbjct: 77 KIYHPNVDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDP 123
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%)
Query: 34 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISI 93
NI+EW TI+GPP ++YEGG F ++F +YP PP V F T I+H N+ G +C+ I
Sbjct: 31 NIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDI 90
Query: 94 LH 95
L
Sbjct: 91 LK 92
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 34 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISI 93
NI+EW TI+GPP ++YEGG F ++F YP PP V F T I+H N+ G +C+ I
Sbjct: 76 NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 135
Query: 94 LH 95
L
Sbjct: 136 LK 137
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 20 NPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIW 79
+P A + V E++I T +GPP T YEGG F + P YP PP ++F T+++
Sbjct: 16 DPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVY 75
Query: 80 HPNVYP-DGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPAN 138
HPN+ G +C+ IL W PV T++ P P +
Sbjct: 76 HPNISSVTGAICLDIL-------------KNAWSPVITLKSALISLQALLQSPEPNDPQD 122
Query: 139 VEAAVSYL 146
E A YL
Sbjct: 123 AEVAQHYL 130
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 29 LVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYP-DG 87
LVDE N E I GPPDT YEGG + + P YP +PP V+F T+IWHPN+ G
Sbjct: 84 LVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 142
Query: 88 RVCISILH 95
+C+ IL
Sbjct: 143 AICLDILK 150
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 20 NPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIW 79
+P A + V E++I T +GPP T YEGG F + P YP PP ++F T+++
Sbjct: 17 DPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVY 76
Query: 80 HPNVYP-DGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPAN 138
HPN+ G +C+ IL W PV T++ P P +
Sbjct: 77 HPNISSVTGAICLDILRNA-------------WSPVITLKSALISLQALLQSPEPNDPQD 123
Query: 139 VEAAVSYL 146
E A YL
Sbjct: 124 AEVAQHYL 131
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 29 LVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYP-DG 87
LVDE N E I GPPDT YEGG + + P YP +PP V+F T+IWHPN+ G
Sbjct: 48 LVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 106
Query: 88 RVCISILH 95
+C+ IL
Sbjct: 107 AICLDILK 114
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 29 LVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYP-DG 87
LVDE N E I GPPDT YEGG + + P YP +PP V+F T+IWHPN+ G
Sbjct: 35 LVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 93
Query: 88 RVCISILH 95
+C+ IL
Sbjct: 94 AICLDILK 101
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 29 LVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYP-DG 87
LVDE N E I GPPDT YEGG + + P YP +PP V+F T+IWHPN+ G
Sbjct: 33 LVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 91
Query: 88 RVCISILH 95
+C+ IL
Sbjct: 92 AICLDILK 99
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 29 LVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYP-DG 87
LVDE N E I GPPDT YEGG + + P YP +PP V+F T+IWHPN+ G
Sbjct: 32 LVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 90
Query: 88 RVCISILH 95
+C+ IL
Sbjct: 91 AICLDILK 98
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Query: 34 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISI 93
N+F+W TI G T+YE + + FPS YP + PTVKF T +HPNV G + + I
Sbjct: 58 NLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDI 117
Query: 94 LHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAA 142
L E+W ++ V PN +SP N AA
Sbjct: 118 LK-------------EKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAA 153
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 17 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTT 76
L +PV G +A D+ N+ + VTI GP + YE G F + P +YP P V+F T
Sbjct: 15 LVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 73
Query: 77 EIWHPNVYPDGRVCISILH 95
+I+HPN+ GR+C+ +L
Sbjct: 74 KIYHPNIDRLGRICLDVLK 92
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 17 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTT 76
L +PV G +A D+ N+ + VTI GP + YE G F + P +YP P V+F T
Sbjct: 17 LVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 75
Query: 77 EIWHPNVYPDGRVCISILH 95
+I+HPN+ GR+C+ +L
Sbjct: 76 KIYHPNIDRLGRICLDVLK 94
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 24 GFSAGLVDETN----IFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIW 79
GF A V + + + +W I G T + GG + + +P+ YP+ PP VKF +
Sbjct: 25 GFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFY 84
Query: 80 HPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANV 139
HPNVYP G +C+SIL+ D W P T++ PN SPA
Sbjct: 85 HPNVYPSGTICLSILNEDQD-----------WRPAITLKQIVLGVQDLLDSPNPNSPAQE 133
Query: 140 EAAVSY 145
A S+
Sbjct: 134 PAWRSF 139
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 24 GFSAGLVDETN----IFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIW 79
GF A V + + + +W I G T + GG + + +P+ YP+ PP VKF +
Sbjct: 23 GFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFY 82
Query: 80 HPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANV 139
HPNVYP G +C+SIL+ D W P T++ PN SPA
Sbjct: 83 HPNVYPSGTICLSILNEDQD-----------WRPAITLKQIVLGVQDLLDSPNPNSPAQE 131
Query: 140 EAAVSY 145
A S+
Sbjct: 132 PAWRSF 137
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 13/130 (10%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
++ K + F VDE N+ W I+ P + Y+ G F ++FP+ YP PP + F
Sbjct: 13 EIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFK 71
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T+I+HPN+ G+VC+ + +++E W P + P E
Sbjct: 72 TKIYHPNIDEKGQVCLPV------------ISAENWKPATKTDQVIQSLIALVNDPQPEH 119
Query: 136 PANVEAAVSY 145
P + A Y
Sbjct: 120 PLRADLAEEY 129
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 13/130 (10%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
++ K + F VDE N+ W I+ P + Y+ G F ++FP+ YP PP + F
Sbjct: 15 EIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFK 73
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T+I+HPN+ G+VC+ + +++E W P + P E
Sbjct: 74 TKIYHPNIDEKGQVCLPV------------ISAENWKPATKTDQVIQSLIALVNDPQPEH 121
Query: 136 PANVEAAVSY 145
P + A Y
Sbjct: 122 PLRADLAEEY 131
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 24 GFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNV 83
G SA +V +I W I GP T YEGG F + P +YP +PP +KF T+IWHPN+
Sbjct: 64 GVSAQIVG-GDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNI 122
Query: 84 YPD-GRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAA 142
G +C+ IL W P T+ P P + E A
Sbjct: 123 SSQTGAICLDIL-------------KHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVA 169
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
+L P G A V E N +++ I GP T YEGG + + P YP PP V+F
Sbjct: 12 NLANEPPPGIMAVPVPE-NYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFL 70
Query: 76 TEIWHPNVYPDGRVCISIL 94
T+I+HPN+ GR+C+ IL
Sbjct: 71 TKIYHPNIDKLGRICLDIL 89
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 54/127 (42%), Gaps = 13/127 (10%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL K P D+ N+ W ++ P Y FN +SFP YP PP +KFT
Sbjct: 12 DLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFT 70
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T+I+HPNV +G++C+ I ++SE W P PN
Sbjct: 71 TKIYHPNVDENGQICLPI------------ISSENWKPCTKTCQVLEALNVLVNRPNIRE 118
Query: 136 PANVEAA 142
P ++ A
Sbjct: 119 PLRMDLA 125
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 54/127 (42%), Gaps = 13/127 (10%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL K P D+ N+ W ++ P Y FN +SFP YP PP +KFT
Sbjct: 15 DLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFT 73
Query: 76 TEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
T+I+HPNV +G++C+ I ++SE W P PN
Sbjct: 74 TKIYHPNVDENGQICLPI------------ISSENWKPCTKTCQVLEALNVLVNRPNIRE 121
Query: 136 PANVEAA 142
P ++ A
Sbjct: 122 PLRMDLA 128
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
+L P G A V E N +++ I GP T YEGG + + P YP PP V+F
Sbjct: 12 NLANEPPPGIMAVPVPE-NYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFL 70
Query: 76 TEIWHPNVYPDGRVCISIL 94
T+I+HPN+ GR+C+ IL
Sbjct: 71 TKIYHPNIDKLGRICLDIL 89
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 61/128 (47%), Gaps = 13/128 (10%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
DL +N G +A V E ++ EW V I G +++++G F + F S Y +PP VKF
Sbjct: 34 DLKENNYKGITAKPVSE-DMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFI 92
Query: 76 TEIWHPNVYPD-GRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDE 134
T +HPNV P G+ CI L P E+W +T+ P E
Sbjct: 93 TIPFHPNVDPHTGQPCIDFLDNP-----------EKWNTNYTLSSILLALQVMLSNPVLE 141
Query: 135 SPANVEAA 142
+P N+EAA
Sbjct: 142 NPVNLEAA 149
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 17 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTT 76
L +PV G +A D+ N+ + VTI GP + YE G F + P +YP P V+F T
Sbjct: 15 LVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 73
Query: 77 EIWHPNVYPDGRVCISILH 95
+I+HPN+ GR+ + +L
Sbjct: 74 KIYHPNIDRLGRISLDVLK 92
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 32 ETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIW--HPNVYPDGRV 89
+ +I +W V + G P TLYEG F + F S YP P V FT E HP+VY +G +
Sbjct: 50 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHI 109
Query: 90 CISIL 94
C+SIL
Sbjct: 110 CLSIL 114
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 56/125 (44%), Gaps = 16/125 (12%)
Query: 20 NPVAGFSAGL--VDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKF-TT 76
NP G L +DET++ +W I GP DT YE F ++ PS+YP +PP + F
Sbjct: 30 NPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQN 89
Query: 77 EIWHPNVY-PDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDES 135
I H NV G +C++IL P E W PV + P +S
Sbjct: 90 NILHSNVKSATGEICLNILKP------------EEWTPVWDLLHCVHAVWRLLREPVSDS 137
Query: 136 PANVE 140
P +V+
Sbjct: 138 PLDVD 142
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 17 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTT 76
L +PV G +A D+ N+ + VTI GP + YE G F + P +YP P V+F T
Sbjct: 15 LVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 73
Query: 77 EIWHPNVYPDGRVCISILH 95
+I+HP + GR+ + +L
Sbjct: 74 KIYHPAIDRLGRISLDVLK 92
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 31 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVC 90
+E ++ + VTI GP T Y GG F + ++P SPP F T+I+HPNV +G +C
Sbjct: 38 NEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEIC 97
Query: 91 ISIL 94
+++L
Sbjct: 98 VNVL 101
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 16/99 (16%)
Query: 20 NPVAGFSAGL--VDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKF-TT 76
NP G L +DET++ +W I GP DT YE F ++ PS+YP +PP + F
Sbjct: 30 NPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQN 89
Query: 77 EIWHPNVY-PDGRVCISILHPPGDDPNGYELASERWMPV 114
I H NV G +C++IL P E W PV
Sbjct: 90 NILHCNVKSATGEICLNILKP------------EEWTPV 116
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 11/117 (9%)
Query: 31 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVC 90
D+ + + I+G +T YE G F + P YP PP ++F T I+HPN+ GR+C
Sbjct: 29 DKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRIC 88
Query: 91 ISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESP--ANVEAAVSY 145
+ +L P P G W P + PN + P A++ + Y
Sbjct: 89 LDVLKLP---PKGA------WRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKY 136
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 16/99 (16%)
Query: 20 NPVAGFSAGL--VDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKF-TT 76
NP G L +DET++ +W I GP DT YE F ++ PS+YP +PP + F
Sbjct: 30 NPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQN 89
Query: 77 EIWHPNVY-PDGRVCISILHPPGDDPNGYELASERWMPV 114
I H NV G +C++IL P E W PV
Sbjct: 90 NILHCNVKSATGEICLNILKP------------EEWTPV 116
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 11/117 (9%)
Query: 31 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVC 90
++ + F+ +VT P + Y+GG F P Y PP VK T+IWHPN+ G +C
Sbjct: 42 NKLHCFQLTVT---PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEIC 98
Query: 91 ISILHPPGDDPNGYELASERWMPVHTVEXXX-XXXXXXXXXPNDESPANVEAAVSYL 146
+S+L D G W P T++ N + P N+EAA +L
Sbjct: 99 LSLLREHSIDGTG-------WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHL 148
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 31 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWH-----PNVYP 85
DE + V I GP DT Y G F + FP +YP+SPP V T H PN+Y
Sbjct: 105 DEERLDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYN 164
Query: 86 DGRVCISILH 95
DG+VC+SIL+
Sbjct: 165 DGKVCLSILN 174
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 11/117 (9%)
Query: 31 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVC 90
++ + F+ +VT P + Y+GG F P Y PP VK T+IWHPN+ G +C
Sbjct: 42 NKLHCFQLTVT---PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEIC 98
Query: 91 ISILHPPGDDPNGYELASERWMPVHTVEXXX-XXXXXXXXXPNDESPANVEAAVSYL 146
+S+L D G W P T++ N + P N+EAA +L
Sbjct: 99 LSLLREHSIDGTG-------WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHL 148
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 42 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDP 101
+I P + Y+ G F YP+ PP VK T ++HPN+ +G VC++IL
Sbjct: 40 VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDLEGNVCLNILR------ 93
Query: 102 NGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAA 142
E W PV T+ PN E P N EAA
Sbjct: 94 -------EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAA 127
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 20 NPVAGFSAGL--VDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTE 77
N G S GL D+ + WS TI G P T++E ++ + NYP+SPPTVKF T+
Sbjct: 41 NVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTK 100
Query: 78 IWHPNVYPDGRVCISILH 95
I V GRV + LH
Sbjct: 101 IEMSCVDNCGRVIKNNLH 118
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 20 NPVAGFSAGL--VDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTE 77
N G S GL D+ + WS TI G P T++E ++ + NYP+SPPTVKF T+
Sbjct: 37 NVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTK 96
Query: 78 IWHPNVYPDGRVCISILH 95
I V GRV + LH
Sbjct: 97 IEMSCVDNCGRVIKNNLH 114
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 13/101 (12%)
Query: 42 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDP 101
+I P + Y+ G F YP+ PP VK T ++HPN+ +G V ++IL
Sbjct: 60 VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILR------ 113
Query: 102 NGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAA 142
E W PV T+ PN E P N EAA
Sbjct: 114 -------EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAA 147
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 30 VDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTE-IWHPNVYPDGR 88
V +NI W V +G +T+Y + + FP NYP PP V F + H +VY +G
Sbjct: 44 VHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGD 103
Query: 89 VCISILHPPGDDPN 102
+C+S+L GDD N
Sbjct: 104 ICLSVL---GDDYN 114
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
D K +AG+ L + + ++ V GP T YEGG + ++ P +YP + P++ F
Sbjct: 10 DFTKLIMAGYDLEL-NNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFM 68
Query: 76 TEIWHPNV-YPDGRVCISILHPPGDDPNGYELASERWMPVHT-VEXXXXXXXXXXXXPND 133
++ HPNV G VC+ +++ + W P+++ V PN
Sbjct: 69 NKLLHPNVDEASGSVCLDVIN-------------QTWTPLYSLVNVFEVFLPQLLTYPNP 115
Query: 134 ESPANVEAA 142
P N +AA
Sbjct: 116 SDPLNSDAA 124
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 30 VDETNIFEWSVTIIGPPDTLY--EGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDG 87
VD I+ W + + P D++Y G + + F +YP+ PPTV+F T ++ P V +G
Sbjct: 44 VDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEG 103
Query: 88 RVCISILH 95
+C +++
Sbjct: 104 GICDRMVN 111
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 37 EWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNV-YPDGRVCISILH 95
E+ V GP T YEGG + + P YP P++ F +I+HPN+ G VC+ +++
Sbjct: 52 EFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVIN 111
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 30 VDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTE-IWHPNVYPDGR 88
V NI W V +G +T+Y + + FP +YP PP V F + H +VY +G
Sbjct: 30 VHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGD 89
Query: 89 VCISILHPPGDDPN 102
+C+S+L GDD N
Sbjct: 90 ICLSLL---GDDYN 100
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 33 TNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPN--VYPDGRVC 90
+NI EW + GP T YEGG+++ + FP +P PP++ T PN + R+C
Sbjct: 41 SNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMIT----PNGRFKCNTRLC 96
Query: 91 ISI--LHP 96
+SI HP
Sbjct: 97 LSITDFHP 104
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 15/110 (13%)
Query: 35 IFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNV-YPDGRVCISI 93
+ E+ V GP T YE G + + PS+YP P++ F I HPNV G VC+ +
Sbjct: 37 VAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDV 96
Query: 94 LHPPGDDPNGYELASERWMPVHTVEXXXXXXX-XXXXXPNDESPANVEAA 142
+ ++ W P++ +E PN P NV+AA
Sbjct: 97 I-------------NQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAA 133
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 13/102 (12%)
Query: 41 TIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDD 100
I+ P + Y G N + F YP PP V +I+HPN+ G VC++IL
Sbjct: 68 VIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILR----- 122
Query: 101 PNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAA 142
E W P ++ PN P N +AA
Sbjct: 123 --------EDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAA 156
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 26 SAGLVDETNIF--EWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNV 83
S GL D +I +W+ TI+GPP + +E ++ + NYP+SPP V F ++I P V
Sbjct: 28 SYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCV 87
Query: 84 YP 85
P
Sbjct: 88 NP 89
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 26 SAGLVDETNIF--EWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNV 83
S GL D +I +W+ TI+GPP + +E ++ + NYP+SPP V F ++I P V
Sbjct: 27 SYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCV 86
Query: 84 YPDGRVCISILHPPGDDPNGYELAS 108
P + H D Y + +
Sbjct: 87 NPTTGEVQTDFHTLRDWKRAYTMET 111
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 28 GLVDETN--IFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEI 78
GL D+ + + W+ IIGPP T+YE ++ + YP +PP V+F T+I
Sbjct: 59 GLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI 111
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 31 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEI 78
++ + W+ IIGPP T+YE ++ + YP +PP V+F T+I
Sbjct: 54 EDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI 101
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 26 SAGLVDETN--IFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEI 78
S GL D+ + + W+ IIGPP T YE ++ + YP +PP+V+F T+I
Sbjct: 27 SWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 81
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 26 SAGLVDETN--IFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEI 78
S GL D+ + + W+ I+GPP T+YE ++ + YP +PP V+F T+I
Sbjct: 29 SWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI 83
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 26 SAGLVDETN--IFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEI 78
S GL D+ + + W+ IIGPP T YE ++ + YP +PP+V+F T+I
Sbjct: 26 SWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 80
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 28 GLVDETN--IFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEI 78
GL D+ + + W+ IIGPP T YE ++ + YP +PP+V+F T+I
Sbjct: 34 GLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 86
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 31 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEI 78
++ + W+ IIGPP T YE ++ + YP +PP+V+F T+I
Sbjct: 44 EDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 91
>pdb|1VCK|A Chain A, Crystal Structure Of Ferredoxin Component Of Carbazole
1,9a- Dioxygenase Of Pseudomonas Resinovorans Strain
Ca10
pdb|2DE5|D Chain D, Crystal Structure Of The Electron Transfer Complex Between
Oxygenase And Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE5|E Chain E, Crystal Structure Of The Electron Transfer Complex Between
Oxygenase And Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE5|F Chain F, Crystal Structure Of The Electron Transfer Complex Between
Oxygenase And Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE6|D Chain D, The Reduced Complex Between Oxygenase And Ferredoxin In
Carbazole 1,9a-Dioxygenase
pdb|2DE6|E Chain E, The Reduced Complex Between Oxygenase And Ferredoxin In
Carbazole 1,9a-Dioxygenase
pdb|2DE6|F Chain F, The Reduced Complex Between Oxygenase And Ferredoxin In
Carbazole 1,9a-Dioxygenase
pdb|2DE7|D Chain D, The Substrate-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE7|E Chain E, The Substrate-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE7|F Chain F, The Substrate-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMG|D Chain D, Reduced Carbazole-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMG|E Chain E, Reduced Carbazole-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMG|F Chain F, Reduced Carbazole-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMH|D Chain D, Oxygen-Bound Complex Between Oxygenase And Ferredoxin In
Carbazole 1, 9a-Dioxygenase
pdb|3VMH|E Chain E, Oxygen-Bound Complex Between Oxygenase And Ferredoxin In
Carbazole 1, 9a-Dioxygenase
pdb|3VMH|F Chain F, Oxygen-Bound Complex Between Oxygenase And Ferredoxin In
Carbazole 1, 9a-Dioxygenase
pdb|3VMI|D Chain D, Carbazole- And Oxygen-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMI|E Chain E, Carbazole- And Oxygen-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMI|F Chain F, Carbazole- And Oxygen-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
Length = 115
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 11/72 (15%)
Query: 16 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFT 75
D C + +A S G +D I + + GG FN P++ P + P F
Sbjct: 44 DTCTHGIASLSEGTLDGDVI-----------ECPFHGGAFNVCTGMPASSPCTVPLGVFE 92
Query: 76 TEIWHPNVYPDG 87
E+ VY G
Sbjct: 93 VEVKEGEVYVAG 104
>pdb|4EMY|A Chain A, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548.
pdb|4EMY|B Chain B, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548.
pdb|4EMY|C Chain C, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548.
pdb|4EMY|D Chain D, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548
Length = 413
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 86 DGRVCISILHPPGDDPNGYELASERWMPVHT 116
D S+++ PG++P GY L+ E W V T
Sbjct: 176 DSDRIASLINSPGNNPTGYSLSDEEWDEVIT 206
>pdb|3A24|A Chain A, Crystal Structure Of Bt1871 Retaining Glycosidase
pdb|3A24|B Chain B, Crystal Structure Of Bt1871 Retaining Glycosidase
Length = 641
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 55 FNAIMSFPSNYPNSPPTVKFTTEI---WHPNVYPDGRV 89
FN + PSNY P + F EI W ++ DG++
Sbjct: 519 FNMLCDTPSNYMREPESTAFIAEIPTVWDESIVLDGKM 556
>pdb|3H5L|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid
Abc Transporter From Silicibacter Pomeroyi
pdb|3H5L|B Chain B, Crystal Structure Of A Putative Branched-Chain Amino Acid
Abc Transporter From Silicibacter Pomeroyi
Length = 419
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 38 WSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVY 84
W PP+TLY GGF + N S P K I P +Y
Sbjct: 131 WGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKIAI-ITGPGIY 176
>pdb|3RQ1|A Chain A, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|B Chain B, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|C Chain C, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|D Chain D, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
Length = 418
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 29 LVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNS 68
+ D +IF+ +G P Y GGFF ++ P++ N+
Sbjct: 334 IRDRADIFKQEAAQVGLPXLPYRGGFF---ITIPTDSANA 370
>pdb|3S05|A Chain A, Meos2 Fluorescent Protein-Green Form
pdb|3S05|B Chain B, Meos2 Fluorescent Protein-Green Form
pdb|3S05|C Chain C, Meos2 Fluorescent Protein-Green Form
pdb|3S05|D Chain D, Meos2 Fluorescent Protein-Green Form
Length = 224
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 36 FEWSVTIIGPPDTLYEGG-FFNAIMSFPSNYPNSPPTVKFTTEIWHPNV 83
FE I D EG F+N + + +N+P + P ++ T W P+
Sbjct: 93 FEDGGICIARNDITMEGDTFYNKVRFYGTNFPANGPVMQKKTLKWEPST 141
>pdb|1JC9|A Chain A, Tachylectin 5a From Tachypleus Tridentatus (Japanese
Horseshoe Crab)
Length = 269
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 53 GFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWM 112
G ++I S+ K T+E+ P V PD C IL GY + + WM
Sbjct: 13 GLLDSIKVMASHVKEQLKD-KGTSEVAQPIVSPDPTDCADILLNGYRSSGGYRIWPKSWM 71
Query: 113 PVHTV 117
V T+
Sbjct: 72 TVGTL 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.137 0.456
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,786,273
Number of Sequences: 62578
Number of extensions: 197330
Number of successful extensions: 460
Number of sequences better than 100.0: 125
Number of HSP's better than 100.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 127
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)