Query 031982
Match_columns 149
No_of_seqs 121 out of 1140
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:01:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031982.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031982hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 2.1E-51 4.5E-56 296.5 14.3 136 1-149 1-136 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 2.3E-49 5E-54 280.6 12.2 129 6-148 2-130 (148)
3 KOG0425 Ubiquitin-protein liga 100.0 2.4E-48 5.1E-53 276.2 14.8 149 1-149 1-149 (171)
4 KOG0419 Ubiquitin-protein liga 100.0 1.1E-48 2.4E-53 270.7 12.1 134 2-149 1-134 (152)
5 PTZ00390 ubiquitin-conjugating 100.0 4.2E-46 9E-51 270.8 15.2 130 6-149 3-132 (152)
6 PLN00172 ubiquitin conjugating 100.0 1.5E-45 3.3E-50 266.6 15.1 129 7-149 3-131 (147)
7 KOG0426 Ubiquitin-protein liga 100.0 2.1E-45 4.7E-50 254.6 13.1 145 4-148 3-147 (165)
8 PF00179 UQ_con: Ubiquitin-con 100.0 7.2E-42 1.6E-46 245.3 10.9 129 9-149 1-129 (140)
9 cd00195 UBCc Ubiquitin-conjuga 100.0 1.2E-40 2.5E-45 239.3 14.0 129 8-149 2-130 (141)
10 KOG0418 Ubiquitin-protein liga 100.0 8.7E-41 1.9E-45 243.9 11.5 130 6-149 4-137 (200)
11 KOG0424 Ubiquitin-protein liga 100.0 2.4E-40 5.2E-45 232.3 12.9 137 2-149 1-141 (158)
12 KOG0421 Ubiquitin-protein liga 100.0 2.5E-40 5.5E-45 232.3 10.3 130 4-147 28-157 (175)
13 smart00212 UBCc Ubiquitin-conj 100.0 4.2E-39 9.1E-44 232.2 14.2 129 8-148 1-129 (145)
14 KOG0422 Ubiquitin-protein liga 100.0 6.5E-38 1.4E-42 219.0 11.0 131 6-149 3-133 (153)
15 KOG0420 Ubiquitin-protein liga 100.0 7.5E-36 1.6E-40 215.3 9.4 130 4-149 27-159 (184)
16 KOG0416 Ubiquitin-protein liga 100.0 1E-34 2.2E-39 209.0 8.0 127 6-149 4-132 (189)
17 KOG0427 Ubiquitin conjugating 100.0 8.7E-32 1.9E-36 186.6 12.3 120 3-137 13-134 (161)
18 KOG0894 Ubiquitin-protein liga 100.0 2.2E-31 4.8E-36 198.3 13.0 124 1-137 1-126 (244)
19 KOG0423 Ubiquitin-protein liga 100.0 1.6E-32 3.5E-37 198.3 4.9 128 6-147 11-138 (223)
20 KOG0428 Non-canonical ubiquiti 99.9 4.1E-24 9E-29 162.3 10.4 115 4-132 10-125 (314)
21 KOG0429 Ubiquitin-conjugating 99.8 5.6E-19 1.2E-23 132.5 10.8 126 8-148 22-153 (258)
22 KOG0895 Ubiquitin-conjugating 99.7 4.6E-18 9.9E-23 150.0 8.4 119 5-130 851-971 (1101)
23 KOG0895 Ubiquitin-conjugating 99.7 6.7E-16 1.5E-20 136.5 11.5 120 4-130 281-404 (1101)
24 KOG0896 Ubiquitin-conjugating 99.4 8.7E-13 1.9E-17 92.3 7.5 119 1-130 1-123 (138)
25 KOG0897 Predicted ubiquitin-co 99.1 1.9E-10 4.1E-15 78.5 4.1 75 54-140 12-89 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.7 4.3E-08 9.2E-13 69.7 6.8 67 51-130 34-106 (133)
27 PF05743 UEV: UEV domain; Int 98.4 1.1E-06 2.4E-11 61.6 6.3 68 49-130 42-117 (121)
28 PF08694 UFC1: Ubiquitin-fold 98.2 4.5E-07 9.7E-12 64.4 1.3 83 5-94 24-117 (161)
29 PF14462 Prok-E2_E: Prokaryoti 97.7 0.0005 1.1E-08 48.2 9.3 103 23-129 12-120 (122)
30 KOG3357 Uncharacterized conser 97.6 4.7E-05 1E-09 53.5 3.1 82 5-93 27-119 (167)
31 KOG2391 Vacuolar sorting prote 97.6 0.00034 7.4E-09 56.5 8.3 80 35-132 52-139 (365)
32 PF05773 RWD: RWD domain; Int 96.4 0.014 3E-07 39.2 6.3 69 8-78 4-74 (113)
33 PF14457 Prok-E2_A: Prokaryoti 96.2 0.0078 1.7E-07 44.2 4.3 63 56-130 56-126 (162)
34 smart00591 RWD domain in RING 95.9 0.12 2.5E-06 34.4 8.7 27 51-77 39-65 (107)
35 PF09765 WD-3: WD-repeat regio 90.0 0.49 1.1E-05 38.0 4.2 86 7-129 101-187 (291)
36 KOG0309 Conserved WD40 repeat- 83.4 6.7 0.00015 35.7 7.7 69 6-77 421-491 (1081)
37 KOG4018 Uncharacterized conser 71.6 17 0.00036 28.0 6.0 60 10-73 7-69 (215)
38 PF06113 BRE: Brain and reprod 63.8 21 0.00046 29.2 5.5 42 35-82 53-95 (333)
39 smart00340 HALZ homeobox assoc 61.6 7.3 0.00016 22.1 1.8 15 6-20 20-34 (44)
40 PF14460 Prok-E2_D: Prokaryoti 59.9 16 0.00035 26.9 3.9 20 75-94 89-111 (175)
41 TIGR03737 PRTRC_B PRTRC system 48.0 35 0.00076 26.5 4.2 18 76-93 131-151 (228)
42 PF06113 BRE: Brain and reprod 42.8 33 0.00072 28.2 3.5 25 52-76 305-329 (333)
43 cd00421 intradiol_dioxygenase 42.7 40 0.00086 24.0 3.6 25 52-76 65-90 (146)
44 KOG3285 Spindle assembly check 40.7 57 0.0012 24.5 4.2 40 6-46 120-159 (203)
45 PF03366 YEATS: YEATS family; 40.7 97 0.0021 20.0 4.9 40 36-77 2-41 (84)
46 cd05845 Ig2_L1-CAM_like Second 39.3 82 0.0018 20.8 4.5 26 50-77 16-41 (95)
47 cd03457 intradiol_dioxygenase_ 39.2 47 0.001 24.9 3.6 25 52-76 86-110 (188)
48 KOG4445 Uncharacterized conser 36.1 44 0.00096 27.2 3.2 25 53-77 45-69 (368)
49 PF12065 DUF3545: Protein of u 32.0 36 0.00077 20.8 1.6 13 7-19 36-48 (59)
50 smart00107 BTK Bruton's tyrosi 31.4 21 0.00045 19.5 0.5 17 78-94 7-24 (36)
51 cd03459 3,4-PCD Protocatechuat 31.1 79 0.0017 23.0 3.6 25 52-76 72-101 (158)
52 KOG0177 20S proteasome, regula 28.6 21 0.00046 27.0 0.2 28 86-126 135-162 (200)
53 PF13950 Epimerase_Csub: UDP-g 27.8 64 0.0014 19.5 2.3 20 109-128 36-55 (62)
54 KOG3696 Aspartyl beta-hydroxyl 26.8 1.2E+02 0.0025 24.9 4.1 36 51-86 286-326 (334)
55 PF04881 Adeno_GP19K: Adenovir 26.0 69 0.0015 22.7 2.4 31 31-61 43-74 (139)
56 COG0544 Tig FKBP-type peptidyl 25.9 1.8E+02 0.0039 24.8 5.4 15 53-67 209-223 (441)
57 PF00779 BTK: BTK motif; Inte 25.7 22 0.00048 18.8 -0.0 17 78-94 2-19 (32)
58 PF09606 Med15: ARC105 or Med1 24.6 25 0.00054 32.3 0.0 25 53-77 714-738 (799)
59 PF09362 DUF1996: Domain of un 23.6 94 0.002 24.1 3.0 18 61-78 180-197 (233)
60 PF00845 Gemini_BL1: Geminivir 23.3 1.7E+02 0.0037 23.1 4.4 28 53-80 123-155 (276)
61 CHL00130 rbcS ribulose-1,5-bis 22.7 2.6E+02 0.0056 20.0 4.8 33 7-40 61-93 (138)
62 KOG0662 Cyclin-dependent kinas 22.1 81 0.0018 24.2 2.3 56 67-135 167-226 (292)
63 TIGR02423 protocat_alph protoc 21.3 1.4E+02 0.003 22.5 3.5 24 52-75 96-124 (193)
64 PF05751 FixH: FixH; InterPro 21.0 2.9E+02 0.0063 19.0 5.3 55 8-64 43-97 (146)
65 PF14135 DUF4302: Domain of un 20.9 2.6E+02 0.0055 21.4 5.0 17 69-85 83-101 (235)
66 TIGR03615 RutF pyrimidine util 20.5 3.3E+02 0.0071 19.4 5.6 66 12-95 4-72 (156)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-51 Score=296.48 Aligned_cols=136 Identities=53% Similarity=0.921 Sum_probs=131.2
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEeccccc
Q 031982 1 MAASQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWH 80 (149)
Q Consensus 1 m~~~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~H 80 (149)
|++..+.+||++|++++++++++++++.+.+++|+++|+++|.||++||||||+|++.|.||++||++||+|+|.++|||
T Consensus 1 ~~s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H 80 (153)
T COG5078 1 MSSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH 80 (153)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence 67777999999999999999999999999865699999999999999999999999999999999999999999999999
Q ss_pred CccCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccCC
Q 031982 81 PNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWVP 149 (149)
Q Consensus 81 pnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~~ 149 (149)
|||+++|+|||++|+ +.|+|+++|++||++|+++|.+||++||+|.|||++|+.++
T Consensus 81 PNV~~~G~vCLdIL~-------------~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~ 136 (153)
T COG5078 81 PNVDPSGNVCLDILK-------------DRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDK 136 (153)
T ss_pred CCcCCCCCChhHHHh-------------CCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCH
Confidence 999999999999997 99999999999999999999999999999999999999874
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-49 Score=280.61 Aligned_cols=129 Identities=44% Similarity=0.852 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCccCC
Q 031982 6 ASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYP 85 (149)
Q Consensus 6 ~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~ 85 (149)
+.+||.||++++.+++++|+++.+. ++|+++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||||+.
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~-~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~ 80 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPV-GDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS 80 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCC-CCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc
Confidence 3469999999999999999999975 899999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccC
Q 031982 86 DGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWV 148 (149)
Q Consensus 86 ~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~ 148 (149)
.|+||+++|+ +.|+|+++|..||++|+++|.+||++||++.++|++|+.+
T Consensus 81 ~G~IclDILk-------------~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d 130 (148)
T KOG0417|consen 81 NGRICLDILK-------------DQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTD 130 (148)
T ss_pred cccchHHhhh-------------ccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhh
Confidence 9999999997 7799999999999999999999999999999999999865
No 3
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-48 Score=276.18 Aligned_cols=149 Identities=72% Similarity=1.262 Sum_probs=145.4
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEeccccc
Q 031982 1 MAASQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWH 80 (149)
Q Consensus 1 m~~~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~H 80 (149)
|+++.+...|.++|++|++.+..|+++..+|+.|+++|.|.|+||++|+|+||.|+..++||.+||.+||+++|.+++||
T Consensus 1 m~~~~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwH 80 (171)
T KOG0425|consen 1 MTSSQASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWH 80 (171)
T ss_pred CccchhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcC
Confidence 78888999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred CccCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccCC
Q 031982 81 PNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWVP 149 (149)
Q Consensus 81 pnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~~ 149 (149)
|||+++|.+|++||++.+.++.||+...+.|+|..|+++||++|.++|.+||.++|+|.|||+.|+.+|
T Consensus 81 PNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~ 149 (171)
T KOG0425|consen 81 PNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENP 149 (171)
T ss_pred CCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999774
No 4
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-48 Score=270.73 Aligned_cols=134 Identities=46% Similarity=0.827 Sum_probs=129.8
Q ss_pred chHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccC
Q 031982 2 AASQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHP 81 (149)
Q Consensus 2 ~~~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hp 81 (149)
|+.+|.+||++|++.++++++.|++..++ ++|+++|.++|+||.+|||+||+|++.|.|+++||.+||.|+|.+..|||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~-~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHP 79 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPV-ENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHP 79 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCC-ccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCC
Confidence 45689999999999999999999999998 89999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccCC
Q 031982 82 NVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWVP 149 (149)
Q Consensus 82 nv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~~ 149 (149)
||+++|.||+++|. ..|+|.|++.+||.+||++|.+|++++|+|.|||++|+.+|
T Consensus 80 Nvya~G~iClDiLq-------------NrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~ 134 (152)
T KOG0419|consen 80 NVYADGSICLDILQ-------------NRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENK 134 (152)
T ss_pred CcCCCCcchHHHHh-------------cCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhCh
Confidence 99999999999997 89999999999999999999999999999999999998765
No 5
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=4.2e-46 Score=270.76 Aligned_cols=130 Identities=32% Similarity=0.664 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCccCC
Q 031982 6 ASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYP 85 (149)
Q Consensus 6 ~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~ 85 (149)
++|||++|++++.+++++|+.+.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~-~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~ 81 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPD-PGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK 81 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEC-CCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECC
Confidence 5799999999999999999999886 789999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccCC
Q 031982 86 DGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWVP 149 (149)
Q Consensus 86 ~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~~ 149 (149)
+|.||+++|. +.|+|++||++||++|+++|.+|++++|+|.+||++|++++
T Consensus 82 ~G~iCl~iL~-------------~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~ 132 (152)
T PTZ00390 82 LGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNR 132 (152)
T ss_pred CCeEECccCc-------------ccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCH
Confidence 9999999996 88999999999999999999999999999999999999874
No 6
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.5e-45 Score=266.60 Aligned_cols=129 Identities=42% Similarity=0.805 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCccCCC
Q 031982 7 SLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPD 86 (149)
Q Consensus 7 ~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~~ 86 (149)
.+||++|++++++++++++++.+. ++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+|+||||+.+
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~-~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~ 81 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPS-DENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSN 81 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEC-CCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCC
Confidence 489999999999999999999986 7899999999999999999999999999999999999999999999999999999
Q ss_pred CcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccCC
Q 031982 87 GRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWVP 149 (149)
Q Consensus 87 G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~~ 149 (149)
|.||+++|. ++|+|++||++||.+|+++|.+|++++|+|.+||++|++++
T Consensus 82 G~iCl~il~-------------~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~ 131 (147)
T PLN00172 82 GSICLDILR-------------DQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENR 131 (147)
T ss_pred CEEEcccCc-------------CCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCH
Confidence 999999996 88999999999999999999999999999999999998874
No 7
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-45 Score=254.62 Aligned_cols=145 Identities=56% Similarity=0.984 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCcc
Q 031982 4 SQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNV 83 (149)
Q Consensus 4 ~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv 83 (149)
..|+|||++||++|..++++||.+.+.+++|+++|.+.|.||++|+|+||+|..++.||.+||.+||+++|...+|||||
T Consensus 3 ~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNi 82 (165)
T KOG0426|consen 3 GTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNI 82 (165)
T ss_pred hhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccC
Q 031982 84 YPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWV 148 (149)
Q Consensus 84 ~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~ 148 (149)
+++|++|++||+..+.++.||.+..+.|+|..+++.||+++.++|.+||.++.+|.+|+++|+.+
T Consensus 83 y~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~ 147 (165)
T KOG0426|consen 83 YPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWRED 147 (165)
T ss_pred cCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999864
No 8
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=7.2e-42 Score=245.27 Aligned_cols=129 Identities=53% Similarity=0.910 Sum_probs=117.8
Q ss_pred HHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCccCCCCc
Q 031982 9 LLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGR 88 (149)
Q Consensus 9 RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~~G~ 88 (149)
||++|+++++++++.|+.+.+.+++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+|+||||+.+|+
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999974349999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccCC
Q 031982 89 VCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWVP 149 (149)
Q Consensus 89 iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~~ 149 (149)
||+++|. .+.|+|+++|.+||.+|+++|.+|+.++|+|.+||++|++++
T Consensus 81 icl~~l~------------~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~ 129 (140)
T PF00179_consen 81 ICLDILN------------PESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDR 129 (140)
T ss_dssp BGHGGGT------------TTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCH
T ss_pred chhhhhh------------cccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCH
Confidence 9999997 256999999999999999999999999999999999998763
No 9
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=1.2e-40 Score=239.32 Aligned_cols=129 Identities=49% Similarity=0.859 Sum_probs=123.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCccCCCC
Q 031982 8 LLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDG 87 (149)
Q Consensus 8 ~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~~G 87 (149)
|||++|++++++++..|+.+.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.++++||||+.+|
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~-~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G 80 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPV-EENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENG 80 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEEC-CCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCC
Confidence 79999999999999999999886 77999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccCC
Q 031982 88 RVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWVP 149 (149)
Q Consensus 88 ~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~~ 149 (149)
.||+++|. .++|+|++++.+||.+|+++|.+|+.++|+|.|||++|++++
T Consensus 81 ~icl~~l~------------~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~ 130 (141)
T cd00195 81 KICLSILK------------THGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENR 130 (141)
T ss_pred CCchhhcC------------CCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCH
Confidence 99999997 135999999999999999999999999999999999999764
No 10
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-41 Score=243.93 Aligned_cols=130 Identities=35% Similarity=0.693 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHhhCC---CCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCc
Q 031982 6 ASLLLQKQLKDLCKNP---VAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPN 82 (149)
Q Consensus 6 ~~~RL~~El~~l~~~~---~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpn 82 (149)
+.+||++|.+++.++. ..||.++.+ ++|+.+....|.||++||||||+|.++|++|++|||+||+|+|.|+|||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~v-n~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPn 82 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMV-NENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPN 82 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEc-cCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCC
Confidence 8999999999999988 678999998 689999999999999999999999999999999999999999999999999
Q ss_pred cCC-CCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccCC
Q 031982 83 VYP-DGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWVP 149 (149)
Q Consensus 83 v~~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~~ 149 (149)
|++ .|.||+++|. +.|++++||+++|+.||++|..|++.||.+.++|++|.+++
T Consensus 83 VSs~tGaICLDilk-------------d~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~ 137 (200)
T KOG0418|consen 83 VSSQTGAICLDILK-------------DQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNY 137 (200)
T ss_pred CCcccccchhhhhh-------------cccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhH
Confidence 997 8999999997 99999999999999999999999999999999999999863
No 11
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-40 Score=232.26 Aligned_cols=137 Identities=38% Similarity=0.686 Sum_probs=127.6
Q ss_pred chHHHHHHHHHHHHHHhhCCCCCeEEEecCC----CCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecc
Q 031982 2 AASQASLLLQKQLKDLCKNPVAGFSAGLVDE----TNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTE 77 (149)
Q Consensus 2 ~~~~~~~RL~~El~~l~~~~~~~~~~~~~~~----~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~ 77 (149)
+|..+..||++|-+.+.++.+-|+.+.++.. .|++.|.+.|.|++||+||||.|.+.+.||++||.+||+++|.++
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 3456799999999999999999999988743 368999999999999999999999999999999999999999999
Q ss_pred cccCccCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccCC
Q 031982 78 IWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWVP 149 (149)
Q Consensus 78 i~Hpnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~~ 149 (149)
+|||||++.|.|||++|.. ..+|+|++||.+||.+||.+|.+||..+|+|.||...|.+++
T Consensus 81 l~HPNVypsgtVcLsiL~e-----------~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r 141 (158)
T KOG0424|consen 81 LFHPNVYPSGTVCLSILNE-----------EKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDR 141 (158)
T ss_pred CcCCCcCCCCcEehhhhcc-----------ccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCH
Confidence 9999999999999999973 245999999999999999999999999999999999999874
No 12
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-40 Score=232.27 Aligned_cols=130 Identities=43% Similarity=0.710 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCcc
Q 031982 4 SQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNV 83 (149)
Q Consensus 4 ~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv 83 (149)
.+..|||++||..|.....+||++.+. .+|++.|..+|.||++|+|+|..|++.+.||.+||++||.|.|+|+.|||||
T Consensus 28 ~~V~KRLq~ELm~Lmms~~~gISAFP~-~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNV 106 (175)
T KOG0421|consen 28 HSVTKRLQSELMGLMMSNTPGISAFPE-SDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNV 106 (175)
T ss_pred chHHHHHHHHHHHHHhcCCCCcccCcC-cCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCc
Confidence 467899999999999999999999885 7899999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhccc
Q 031982 84 YPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLW 147 (149)
Q Consensus 84 ~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~ 147 (149)
+-.|.||++||. +.|+..|.+++||++||++|.+||.++|+|..||++|.+
T Consensus 107 D~~GnIcLDILk-------------dKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~d 157 (175)
T KOG0421|consen 107 DLSGNICLDILK-------------DKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWSD 157 (175)
T ss_pred cccccchHHHHH-------------HHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhcC
Confidence 999999999997 999999999999999999999999999999999999973
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=4.2e-39 Score=232.23 Aligned_cols=129 Identities=50% Similarity=0.902 Sum_probs=122.6
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCccCCCC
Q 031982 8 LLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDG 87 (149)
Q Consensus 8 ~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~~G 87 (149)
+||++|+++++++.+.|+.+.+.+++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.++++||||+++|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 59999999999999999998887445999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccC
Q 031982 88 RVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWV 148 (149)
Q Consensus 88 ~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~ 148 (149)
.||+++|. .++|+|++++.+||++|+++|.+|+.++|+|.|||++|+.+
T Consensus 81 ~icl~~l~------------~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~ 129 (145)
T smart00212 81 EICLDILK------------QEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKN 129 (145)
T ss_pred CEehhhcC------------CCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHC
Confidence 99999996 26899999999999999999999999999999999999876
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-38 Score=218.96 Aligned_cols=131 Identities=37% Similarity=0.725 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCccCC
Q 031982 6 ASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYP 85 (149)
Q Consensus 6 ~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~ 85 (149)
+.+||++||.+|+++....+.-..++++|++.|.+.|. |.+-||..|.|.++|.||.+|||+||+|.|.|+||||||++
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe 81 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE 81 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence 57899999999999887776555557889999999999 99999999999999999999999999999999999999999
Q ss_pred CCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccCC
Q 031982 86 DGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWVP 149 (149)
Q Consensus 86 ~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~~ 149 (149)
.|.+|+.++. .++|.|++++.+||++|.+++.+|++++|++.|+|+.|.++|
T Consensus 82 ~gqvClPiis------------~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~ 133 (153)
T KOG0422|consen 82 KGQVCLPIIS------------AENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDP 133 (153)
T ss_pred CCceeeeeee------------cccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCH
Confidence 9999999998 499999999999999999999999999999999999999875
No 15
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-36 Score=215.25 Aligned_cols=130 Identities=37% Similarity=0.630 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecC-CCCce--eEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEeccccc
Q 031982 4 SQASLLLQKQLKDLCKNPVAGFSAGLVD-ETNIF--EWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWH 80 (149)
Q Consensus 4 ~~~~~RL~~El~~l~~~~~~~~~~~~~~-~~n~~--~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~H 80 (149)
+.++-||++|+.++ +.+++++.-.++ .++.. ++.++|. |.+|.|+||.|.|.+.+|+.||++||+|.|+|+|||
T Consensus 27 s~a~lrl~~di~el--nLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~H 103 (184)
T KOG0420|consen 27 SAALLRLKKDILEL--NLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYH 103 (184)
T ss_pred cHHHHHHHhhhhhc--cCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeecccc
Confidence 45677888888777 556665533332 34444 5999998 999999999999999999999999999999999999
Q ss_pred CccCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccCC
Q 031982 81 PNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWVP 149 (149)
Q Consensus 81 pnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~~ 149 (149)
|||+.+|.|||+||+ ++|+|+.++.+|+.+|+.+|.+|+++||+|.|||+.+++++
T Consensus 104 PNId~~GnVCLnILR-------------edW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~ 159 (184)
T KOG0420|consen 104 PNIDLDGNVCLNILR-------------EDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNR 159 (184)
T ss_pred CCcCCcchHHHHHHH-------------hcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCH
Confidence 999999999999998 88999999999999999999999999999999999998875
No 16
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-34 Score=209.02 Aligned_cols=127 Identities=29% Similarity=0.632 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCccCC
Q 031982 6 ASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYP 85 (149)
Q Consensus 6 ~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~ 85 (149)
..||+..|+..|.. .+..|..+ ++++.+++|.+.||++|||+||+++++|.+|++||++.|+|.|+++||||||+.
T Consensus 4 ~~rRid~Dv~KL~~---s~yeV~~i-nd~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe 79 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLM---SDYEVTII-NDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDE 79 (189)
T ss_pred cccchhhHHHHHHh---cCCeEEEe-cCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchh
Confidence 57899999998876 45677776 678999999999999999999999999999999999999999999999999996
Q ss_pred -CCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHH-HHhhcCCCCCCcccHHHHHhcccCC
Q 031982 86 -DGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSI-ISMLSSPNDESPANVEAAVSYLWVP 149 (149)
Q Consensus 86 -~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i-~~~l~~p~~~~p~n~e~a~~~~~~~ 149 (149)
.|.|||+.++ +.|+|.+.+..|+..+ -.+|..||+.||+|.|||.+|+++|
T Consensus 80 ~SGsVCLDViN-------------QtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~ 132 (189)
T KOG0416|consen 80 ASGSVCLDVIN-------------QTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDP 132 (189)
T ss_pred ccCccHHHHHh-------------hhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCH
Confidence 9999999998 8999999999999654 6788999999999999999999875
No 17
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=8.7e-32 Score=186.59 Aligned_cols=120 Identities=36% Similarity=0.744 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEeccc-ccC
Q 031982 3 ASQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEI-WHP 81 (149)
Q Consensus 3 ~~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i-~Hp 81 (149)
+..+.+||+|||.+++.+++.|+.... .+|+..|.+.+.|.+||.|+|.+|.+.++||+.||++.|+|.|..++ .||
T Consensus 13 s~~at~RLqKEl~e~q~~pP~G~~~~v--~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HP 90 (161)
T KOG0427|consen 13 SKIATNRLQKELSEWQNNPPTGFKHRV--TDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHP 90 (161)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcceeec--ccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCC
Confidence 456899999999999999999998874 58999999999999999999999999999999999999999999986 899
Q ss_pred ccCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCC-CCCCcc
Q 031982 82 NVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSP-NDESPA 137 (149)
Q Consensus 82 nv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p-~~~~p~ 137 (149)
+|+++|.|||++|. +.|+|++++.+|.+.|.++|++- ....|.
T Consensus 91 HiYSNGHICL~iL~-------------d~WsPAmsv~SvClSIlSMLSSs~eKqrP~ 134 (161)
T KOG0427|consen 91 HIYSNGHICLDILY-------------DSWSPAMSVQSVCLSILSMLSSSKEKQRPT 134 (161)
T ss_pred ceecCCeEEEEeec-------------ccCCcchhhHHHHHHHHHHHccCccccCCC
Confidence 99999999999997 99999999999999999999863 444444
No 18
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-31 Score=198.29 Aligned_cols=124 Identities=33% Similarity=0.659 Sum_probs=111.2
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEeccccc
Q 031982 1 MAASQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWH 80 (149)
Q Consensus 1 m~~~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~H 80 (149)
||+..+.|||+|||+.|++++.++|.+.+. ++|+.+||.+|.||++|||+||.|+.+|.||++||++||.|++.|+ +
T Consensus 1 ma~k~a~kRl~keY~~l~k~Pv~~i~A~P~-p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP--N 77 (244)
T KOG0894|consen 1 MASKAAVKRLQKEYRALCKDPVPYIVARPN-PNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITP--N 77 (244)
T ss_pred CcchHHHHHHHHHHHHHHhCCchhhccCCC-ccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECC--C
Confidence 899999999999999999999999999996 9999999999999999999999999999999999999999999996 1
Q ss_pred CccCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC--CCCCCcc
Q 031982 81 PNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSS--PNDESPA 137 (149)
Q Consensus 81 pnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~--p~~~~p~ 137 (149)
..+-.+-++||++-+ +|.+.|+|+|++.+||.+|.++|.+ |...+..
T Consensus 78 GRFktntRLCLSiSD----------fHPdsWNP~WsVStILtGLlSFM~e~~pTtGSI~ 126 (244)
T KOG0894|consen 78 GRFKTNTRLCLSISD----------FHPDSWNPGWSVSTILTGLLSFMTEDSPTTGSIE 126 (244)
T ss_pred CceecCceEEEeccc----------cCcCcCCCcccHHHHHHHHHHHHhcCCCccCccc
Confidence 224456789999986 5679999999999999999999975 4444443
No 19
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.6e-32 Score=198.28 Aligned_cols=128 Identities=33% Similarity=0.597 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCccCC
Q 031982 6 ASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYP 85 (149)
Q Consensus 6 ~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~ 85 (149)
..|.|.+|++.+...++.||.|.+ +++|+...++.|.||.||||++|.|++.+.+..+||++||+-+|+|+||||||-.
T Consensus 11 vik~~~kEl~~l~~~PPdGIKV~~-NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaa 89 (223)
T KOG0423|consen 11 VIKQLAKELKSLDESPPDGIKVVV-NEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAA 89 (223)
T ss_pred HHHHHHHHHHhcccCCCCceEEec-ChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCccc
Confidence 578999999999999999999977 5889999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhccc
Q 031982 86 DGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLW 147 (149)
Q Consensus 86 ~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~ 147 (149)
+|.||.+.|. ..|+|.+.|+-||+.|..+|..|++++.+|.||.++...
T Consensus 90 NGEICVNtLK-------------kDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLE 138 (223)
T KOG0423|consen 90 NGEICVNTLK-------------KDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLE 138 (223)
T ss_pred Cceehhhhhh-------------cccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHH
Confidence 9999999997 899999999999999999999999999999999998653
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.1e-24 Score=162.34 Aligned_cols=115 Identities=31% Similarity=0.684 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCcc
Q 031982 4 SQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNV 83 (149)
Q Consensus 4 ~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv 83 (149)
+++.|||+||.++++ ++...+.+.+. ++|+++|+++|.||.+|-|+||+||.+|.||.+||++||.+..+|+ +..+
T Consensus 10 npaVkRlmkEa~El~-~Ptd~yha~pl-EdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp--NGRF 85 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK-DPTDHYHAQPL-EDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP--NGRF 85 (314)
T ss_pred CHHHHHHHHHHHHhc-Cchhhhhhccc-hhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC--CCce
Confidence 689999999999998 77777888887 8999999999999999999999999999999999999999999986 2234
Q ss_pred CCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhc-CCC
Q 031982 84 YPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLS-SPN 132 (149)
Q Consensus 84 ~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~-~p~ 132 (149)
.-+.+|||+|-. .+.+.|.|+|+|++.|++|..+|- .|+
T Consensus 86 E~nkKiCLSISg----------yHPEtWqPSWSiRTALlAlIgFmPt~p~ 125 (314)
T KOG0428|consen 86 EVNKKICLSISG----------YHPETWQPSWSIRTALLALIGFMPTKPE 125 (314)
T ss_pred eeCceEEEEecC----------CCccccCcchhHHHHHHHHHccccCCCC
Confidence 446789999974 456999999999999999999985 343
No 21
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=5.6e-19 Score=132.50 Aligned_cols=126 Identities=22% Similarity=0.416 Sum_probs=111.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCC--CCCeeeEecccccCccCC
Q 031982 8 LLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPN--SPPTVKFTTEIWHPNVYP 85 (149)
Q Consensus 8 ~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~--~pP~i~f~t~i~Hpnv~~ 85 (149)
..|..|+..+.+...+||.|.+. -+|-+.|..+|++ ..|.|.||+|+|+|.+|++||. +-|+|.|.+.++||+|.+
T Consensus 22 y~llAEf~lV~~ekL~gIyviPS-yan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp 99 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPS-YANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICP 99 (258)
T ss_pred HHHHHHHHHHHhccCCceEEccc-ccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCC
Confidence 45777888899899999999997 8899999999995 4558999999999999999994 579999999999999998
Q ss_pred -CCcEEeecCCCCCCCCCCCCCCCCCCCcc-CcHHHHHHHHHHhhcCCCCCCc-c-cHHHHHhcccC
Q 031982 86 -DGRVCISILHPPGDDPNGYELASERWMPV-HTVESIVLSIISMLSSPNDESP-A-NVEAAVSYLWV 148 (149)
Q Consensus 86 -~G~iCl~~l~~~~~~~~~~~~~~~~W~p~-~~i~~il~~i~~~l~~p~~~~p-~-n~e~a~~~~~~ 148 (149)
++.+|++-.. ..|.-. .+|..||..||..|.+|+.+.+ + |+|||.+|+.+
T Consensus 100 ~skeLdl~raf-------------~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~ 153 (258)
T KOG0429|consen 100 KSKELDLNRAF-------------PEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKH 153 (258)
T ss_pred CccceeHhhhh-------------hhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHh
Confidence 8999997665 559764 4899999999999999987766 4 99999999864
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4.6e-18 Score=149.97 Aligned_cols=119 Identities=29% Similarity=0.510 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecc--cccCc
Q 031982 5 QASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTE--IWHPN 82 (149)
Q Consensus 5 ~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~--i~Hpn 82 (149)
...+..+.|++-+..+.+.||.|... ++.+.-..+.|.|+.||||.+|.|.|+|.||++||.+||.+...+. .++||
T Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~vr~~-e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npn 929 (1101)
T KOG0895|consen 851 QWAKKVQTEWKILPLSLPSGIFVRAY-EDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPN 929 (1101)
T ss_pred HHHHHHHHHHHhhhccCCCceEEEec-hHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcc
Confidence 34456667777777888999999885 8888889999999999999999999999999999999999999876 68999
Q ss_pred cCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC
Q 031982 83 VYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSS 130 (149)
Q Consensus 83 v~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~ 130 (149)
.|.+|++|+++|.+|.+-.+ +-|+|+-+|.+||..||.++..
T Consensus 930 ly~~g~vc~s~l~tw~g~~~------e~w~~~s~~lq~l~s~q~l~l~ 971 (1101)
T KOG0895|consen 930 LYEDGKVCLSLLNTWHGRGN------EVWNPSSSILQVLVSIQGLVLN 971 (1101)
T ss_pred cccccceehhhhccccCCCc------cccCcchhHHHHHHHhhhhhcc
Confidence 99999999999998776555 8999999999999999998653
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=6.7e-16 Score=136.47 Aligned_cols=120 Identities=33% Similarity=0.522 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecc---ccc
Q 031982 4 SQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTE---IWH 80 (149)
Q Consensus 4 ~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~---i~H 80 (149)
....+|+++|++-+.++.++|+.+.+. +.++....++|.|+.|+||++|.|.|+|.||..||..||.+.+++. .+.
T Consensus 281 ~~~skrv~ke~~llskdlpEgifvrp~-e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~n 359 (1101)
T KOG0895|consen 281 KNWSKKVAKELKLLSKDLPEGIFVRPD-EGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLN 359 (1101)
T ss_pred hhhHHHHHHHhhhhcccCCCCcccccc-ccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeec
Confidence 346799999999999999999988885 8899999999999999999999999999999999999999999987 589
Q ss_pred CccCCCCcEEeecCCCCCCCCCCCCCCCCCCCcc-CcHHHHHHHHHHhhcC
Q 031982 81 PNVYPDGRVCISILHPPGDDPNGYELASERWMPV-HTVESIVLSIISMLSS 130 (149)
Q Consensus 81 pnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~-~~i~~il~~i~~~l~~ 130 (149)
||.+.+|+||+++|.++.+.. .+.|+|. .+|.++|..||.++..
T Consensus 360 PNlYn~GKVcLslLgTwtg~~------~e~wtp~~~sl~qvL~sIQ~Li~~ 404 (1101)
T KOG0895|consen 360 PNLYNDGKVCLSLLGTWTGSR------REKWTPNGSSLLQVLESIQGLILN 404 (1101)
T ss_pred CCcccCceEEeeeeeeccccc------ccCCCccccchhhhhhhhhhhhcc
Confidence 999999999999998655432 3889998 7999999999999864
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=8.7e-13 Score=92.27 Aligned_cols=119 Identities=29% Similarity=0.462 Sum_probs=94.1
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCC-eEEEecCCCCc--eeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecc
Q 031982 1 MAASQASLLLQKQLKDLCKNPVAG-FSAGLVDETNI--FEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTE 77 (149)
Q Consensus 1 m~~~~~~~RL~~El~~l~~~~~~~-~~~~~~~~~n~--~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~ 77 (149)
|+-.++..||.+|+.+=++-..++ ++....|.+|+ ..|...|.||+.|+||+-+|.++|.-.++||..||+++|.++
T Consensus 1 ~~~vPrnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tk 80 (138)
T KOG0896|consen 1 MVKVPRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTK 80 (138)
T ss_pred CCccccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEE
Confidence 455567789999988887766555 55555545554 589999999999999999999999999999999999999999
Q ss_pred cccCccCC-CCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC
Q 031982 78 IWHPNVYP-DGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSS 130 (149)
Q Consensus 78 i~Hpnv~~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~ 130 (149)
+--.-|+. +|.+.-..+.. ..+|+-.+++..+|.+++..+..
T Consensus 81 inm~gvn~~~g~Vd~~~i~~-----------L~~W~~~y~~~~vl~~lr~~m~~ 123 (138)
T KOG0896|consen 81 INMNGVNSSNGVVDPRDITV-----------LARWQRSYSIKMVLGQLRKEMMS 123 (138)
T ss_pred eeecccccCCCccCccccch-----------hhcccccchhhHHHHhhhHHHHH
Confidence 86666765 66655422220 27899999999999999876553
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.9e-10 Score=78.47 Aligned_cols=75 Identities=23% Similarity=0.409 Sum_probs=62.8
Q ss_pred EEEEEEeCCCCCCCCCCeeeEeccc-ccCccCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCC
Q 031982 54 FFNAIMSFPSNYPNSPPTVKFTTEI-WHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPN 132 (149)
Q Consensus 54 ~f~~~i~fp~~YP~~pP~i~f~t~i-~Hpnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~ 132 (149)
...+.+.|+++||+.||.++...++ .-.-|-.+|.||+.+|. +++|+++++++.++++|.+.+..-.
T Consensus 12 ~ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt------------~qgwssay~Ve~vi~qiaatlVkG~ 79 (122)
T KOG0897|consen 12 NILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLT------------KQGWSSAYEVERVIMQIAATLVKGG 79 (122)
T ss_pred eeEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHc------------cccccchhhHHHHHHHHHHHhhccc
Confidence 3466789999999999999998874 45567789999999998 4999999999999999999998753
Q ss_pred --CCCcccHH
Q 031982 133 --DESPANVE 140 (149)
Q Consensus 133 --~~~p~n~e 140 (149)
.+.|++.+
T Consensus 80 ~ri~~~a~k~ 89 (122)
T KOG0897|consen 80 ARIEFPAEKS 89 (122)
T ss_pred eeEecCcchh
Confidence 56666554
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.72 E-value=4.3e-08 Score=69.72 Aligned_cols=67 Identities=27% Similarity=0.616 Sum_probs=59.5
Q ss_pred CCcEEEEEEeCCCCCCCCCCeeeEeccc---ccCccCCCCcEEe---ecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHH
Q 031982 51 EGGFFNAIMSFPSNYPNSPPTVKFTTEI---WHPNVYPDGRVCI---SILHPPGDDPNGYELASERWMPVHTVESIVLSI 124 (149)
Q Consensus 51 ~gg~f~~~i~fp~~YP~~pP~i~f~t~i---~Hpnv~~~G~iCl---~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i 124 (149)
.|+.+.+.|.+|++||..||.|....+. +=|||+.+|.+|+ +..- +.|.|.-++.++|.+.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~-------------D~~~P~~~~~~~l~~a 100 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVL-------------DPWDPEGIIADCLERA 100 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCccc-------------CccCHHHHHHHHHHHH
Confidence 6899999999999999999999988654 6799999999999 4443 8999999999999999
Q ss_pred HHhhcC
Q 031982 125 ISMLSS 130 (149)
Q Consensus 125 ~~~l~~ 130 (149)
+.+|.+
T Consensus 101 ~~lL~~ 106 (133)
T PF14461_consen 101 IRLLED 106 (133)
T ss_pred HHHHHH
Confidence 999883
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.38 E-value=1.1e-06 Score=61.61 Aligned_cols=68 Identities=28% Similarity=0.539 Sum_probs=49.5
Q ss_pred CCCCcEE--EEEEeCCCCCCCCCCeeeEeccc-----ccCccCCCCcEEeecCCCCCCCCCCCCCCCCCCCc-cCcHHHH
Q 031982 49 LYEGGFF--NAIMSFPSNYPNSPPTVKFTTEI-----WHPNVYPDGRVCISILHPPGDDPNGYELASERWMP-VHTVESI 120 (149)
Q Consensus 49 ~y~gg~f--~~~i~fp~~YP~~pP~i~f~t~i-----~Hpnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p-~~~i~~i 120 (149)
.|+|..| .+.|-+|.+||.+||.+...... -+.+|+++|+|.+..| ++|++ ..++.++
T Consensus 42 ~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL--------------~~W~~~~s~L~~l 107 (121)
T PF05743_consen 42 TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL--------------QNWNPPSSNLVDL 107 (121)
T ss_dssp CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH--------------HT--TTTS-HHHH
T ss_pred ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh--------------ccCCCCCCCHHHH
Confidence 4778777 56777999999999999875432 2449999999999999 68988 7899999
Q ss_pred HHHHHHhhcC
Q 031982 121 VLSIISMLSS 130 (149)
Q Consensus 121 l~~i~~~l~~ 130 (149)
+..++..|.+
T Consensus 108 v~~l~~~F~~ 117 (121)
T PF05743_consen 108 VQELQAVFSE 117 (121)
T ss_dssp HHHHHHCCCH
T ss_pred HHHHHHHHhH
Confidence 9999888763
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.22 E-value=4.5e-07 Score=64.43 Aligned_cols=83 Identities=18% Similarity=0.284 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCc----------EEEEEEeCCCCCCCCCCeeeE
Q 031982 5 QASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGG----------FFNAIMSFPSNYPNSPPTVKF 74 (149)
Q Consensus 5 ~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg----------~f~~~i~fp~~YP~~pP~i~f 74 (149)
....||.+||+.|-+ ....++++-..|.-.-..+.||-|.|. .|.+++.+|..||..||.|..
T Consensus 24 ~W~~RLKEEy~aLI~-------Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~l 96 (161)
T PF08694_consen 24 LWVQRLKEEYQALIK-------YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIAL 96 (161)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-
T ss_pred HHHHHHHHHHHHHHH-------HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceec
Confidence 457899999998844 101111122223222233555555553 366788899999999999987
Q ss_pred eccc-ccCccCCCCcEEeecC
Q 031982 75 TTEI-WHPNVYPDGRVCISIL 94 (149)
Q Consensus 75 ~t~i-~Hpnv~~~G~iCl~~l 94 (149)
..-- -..-.+.+|+||+++=
T Consensus 97 PeLdGKTaKMYRGGkIClt~H 117 (161)
T PF08694_consen 97 PELDGKTAKMYRGGKICLTDH 117 (161)
T ss_dssp GGGTTT-SSBCCCCBB---TT
T ss_pred cccCCchhhhhcCceEeeecc
Confidence 4321 2344567999999763
No 29
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=97.73 E-value=0.0005 Score=48.17 Aligned_cols=103 Identities=15% Similarity=0.294 Sum_probs=71.8
Q ss_pred CCeEEEecCCCCceeEEEEEEC--CCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCccCCCCcE--EeecCCCCC
Q 031982 23 AGFSAGLVDETNIFEWSVTIIG--PPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRV--CISILHPPG 98 (149)
Q Consensus 23 ~~~~~~~~~~~n~~~w~v~i~g--p~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~~G~i--Cl~~l~~~~ 98 (149)
.|+.++.+ .+.-..|.+ |.| -+.+.|.+..-.+-|.+|+.||..+|.+.+..+-.... .+|.| |.+......
T Consensus 12 ~g~~~E~v-~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~ 87 (122)
T PF14462_consen 12 RGLRWETV-TEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFD 87 (122)
T ss_pred cCceEEEE-EeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcC
Confidence 46777776 445556655 555 55667999999999999999999999887766532211 23456 665544333
Q ss_pred CCC-CCCCCCCCCCCccC-cHHHHHHHHHHhhc
Q 031982 99 DDP-NGYELASERWMPVH-TVESIVLSIISMLS 129 (149)
Q Consensus 99 ~~~-~~~~~~~~~W~p~~-~i~~il~~i~~~l~ 129 (149)
+.. +.||-|...|.|.. +|.+.|..|...|.
T Consensus 88 G~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 88 GRTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred CeeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 322 57888889999977 78888888877664
No 30
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=4.7e-05 Score=53.52 Aligned_cols=82 Identities=17% Similarity=0.310 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcE----------EEEEEeCCCCCCCCCCeeeE
Q 031982 5 QASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGF----------FNAIMSFPSNYPNSPPTVKF 74 (149)
Q Consensus 5 ~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~----------f~~~i~fp~~YP~~pP~i~f 74 (149)
...+||.+||+.|-. ....++++-..|.-.-..++||-|-|.+ |.+++.+|-.||..+|.|..
T Consensus 27 ~wvqrlkeey~sli~-------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeial 99 (167)
T KOG3357|consen 27 LWVQRLKEEYQSLIA-------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIAL 99 (167)
T ss_pred HHHHHHHHHHHHHHH-------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccc
Confidence 356899999999844 2122233334454444567888887743 66777889999999999976
Q ss_pred eccc-ccCccCCCCcEEeec
Q 031982 75 TTEI-WHPNVYPDGRVCISI 93 (149)
Q Consensus 75 ~t~i-~Hpnv~~~G~iCl~~ 93 (149)
..-- -.--.+.+|+||+..
T Consensus 100 peldgktakmyrggkiclt~ 119 (167)
T KOG3357|consen 100 PELDGKTAKMYRGGKICLTD 119 (167)
T ss_pred cccCchhhhhhcCceEeecc
Confidence 4321 112356799999954
No 31
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.00034 Score=56.45 Aligned_cols=80 Identities=25% Similarity=0.490 Sum_probs=61.1
Q ss_pred ceeEEEEEECCCCCCCCCcEEE--EEEeCCCCCCCCCCeeeEecc-----cccCccCCCCcEEeecCCCCCCCCCCCCCC
Q 031982 35 IFEWSVTIIGPPDTLYEGGFFN--AIMSFPSNYPNSPPTVKFTTE-----IWHPNVYPDGRVCISILHPPGDDPNGYELA 107 (149)
Q Consensus 35 ~~~w~v~i~gp~~t~y~gg~f~--~~i~fp~~YP~~pP~i~f~t~-----i~Hpnv~~~G~iCl~~l~~~~~~~~~~~~~ 107 (149)
++....+|. .+|.|.+|. +.|-+.+.||..||.+..... -.|-+|+++|+|.|..|
T Consensus 52 ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL------------- 114 (365)
T KOG2391|consen 52 LLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL------------- 114 (365)
T ss_pred hhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh-------------
Confidence 344444443 367787765 556689999999999976432 14999999999999999
Q ss_pred CCCCCc-cCcHHHHHHHHHHhhcCCC
Q 031982 108 SERWMP-VHTVESIVLSIISMLSSPN 132 (149)
Q Consensus 108 ~~~W~p-~~~i~~il~~i~~~l~~p~ 132 (149)
.+|.+ +..+..++..|.+.|.++.
T Consensus 115 -h~W~~pssdLv~Liq~l~a~f~~~p 139 (365)
T KOG2391|consen 115 -HNWDPPSSDLVGLIQELIAAFSEDP 139 (365)
T ss_pred -ccCCCccchHHHHHHHHHHHhcCCC
Confidence 57977 6689999999999888653
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.43 E-value=0.014 Score=39.20 Aligned_cols=69 Identities=13% Similarity=0.169 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEEC--CCCCCCCCcEEEEEEeCCCCCCCCCCeeeEeccc
Q 031982 8 LLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIG--PPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEI 78 (149)
Q Consensus 8 ~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~g--p~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i 78 (149)
.+...|+..|+.--+..+ ... ...+...+.+.+.. ...+.-....+.+.|.||++||..+|.|.+.+..
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEI-ESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSS-TSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-ccc-ccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 466778888877555444 111 23445566666631 2333344578999999999999999999877653
No 33
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=96.20 E-value=0.0078 Score=44.22 Aligned_cols=63 Identities=21% Similarity=0.362 Sum_probs=50.2
Q ss_pred EEEEeCCCCCCCCCCeeeEecccc---cCccCCC-----CcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHh
Q 031982 56 NAIMSFPSNYPNSPPTVKFTTEIW---HPNVYPD-----GRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISM 127 (149)
Q Consensus 56 ~~~i~fp~~YP~~pP~i~f~t~i~---Hpnv~~~-----G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~ 127 (149)
.+.|.|+.+||..+|.+.+..+.| +||+... .++|+.--. ...|.+..+++.+|..|...
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~------------~~e~~~~~g~~~~l~rl~~W 123 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGP------------WSEWRPSWGPEGFLDRLFDW 123 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCC------------HHHhhhccCHHHHHHHHHHH
Confidence 356899999999999887776643 5777765 679996554 27899999999999999988
Q ss_pred hcC
Q 031982 128 LSS 130 (149)
Q Consensus 128 l~~ 130 (149)
|..
T Consensus 124 l~~ 126 (162)
T PF14457_consen 124 LRD 126 (162)
T ss_pred HHH
Confidence 753
No 34
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=95.91 E-value=0.12 Score=34.36 Aligned_cols=27 Identities=19% Similarity=0.454 Sum_probs=22.8
Q ss_pred CCcEEEEEEeCCCCCCCCCCeeeEecc
Q 031982 51 EGGFFNAIMSFPSNYPNSPPTVKFTTE 77 (149)
Q Consensus 51 ~gg~f~~~i~fp~~YP~~pP~i~f~t~ 77 (149)
....+.+.|.+|++||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345689999999999999999988763
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=90.00 E-value=0.49 Score=37.98 Aligned_cols=86 Identities=19% Similarity=0.354 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCccCCC
Q 031982 7 SLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPD 86 (149)
Q Consensus 7 ~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~~ 86 (149)
.++|.+|+.++..+.. +.+.. ++++....+.+.. +.....++|.++.+||.++|.+...-++
T Consensus 101 ys~ll~EIe~IGW~kl--~~i~~--d~~ls~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~~~P~-------- 162 (291)
T PF09765_consen 101 YSNLLKEIEAIGWDKL--VQIQF--DDDLSTIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSLDLPI-------- 162 (291)
T ss_dssp C-CHHHHHHHHHCGCC--EEEEE---CCCSEEEEEEET------TCEEEEEEEETTTTTTTSEEEECS-TTS--------
T ss_pred HHHHHHHHHHhccccc--eEEec--CCCccEEEEEEEc------CCceEEEEEEECCCCCCCCceeeCCCCc--------
Confidence 3578888888866543 33322 4688888888872 2257789999999999999976543332
Q ss_pred CcEEeecCCCCCCCCCCCCCCCCCCCc-cCcHHHHHHHHHHhhc
Q 031982 87 GRVCISILHPPGDDPNGYELASERWMP-VHTVESIVLSIISMLS 129 (149)
Q Consensus 87 G~iCl~~l~~~~~~~~~~~~~~~~W~p-~~~i~~il~~i~~~l~ 129 (149)
.+ ...|.+ ..++.+++.+.+..+.
T Consensus 163 -----~~--------------~~~w~~~~ssL~~v~~qF~~~le 187 (291)
T PF09765_consen 163 -----PF--------------SLSWSPSQSSLKDVVQQFQEALE 187 (291)
T ss_dssp ------H--------------HHHHHCHT-SHHHHHHHHHHHHH
T ss_pred -----ch--------------hhhhcccccCHHHHHHHHHHHHH
Confidence 11 146888 6788888877776654
No 36
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=83.38 E-value=6.7 Score=35.66 Aligned_cols=69 Identities=16% Similarity=0.295 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcE-EEEEEeCCCCCCCC-CCeeeEecc
Q 031982 6 ASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGF-FNAIMSFPSNYPNS-PPTVKFTTE 77 (149)
Q Consensus 6 ~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~-f~~~i~fp~~YP~~-pP~i~f~t~ 77 (149)
..+-|.+|+.-|-... ..+.++.. +..-+.-.+.+.+|-- +-+|-+ +++.|.||.+||.+ +|.+.|..+
T Consensus 421 ~pQnLgeE~S~Ig~k~-~nV~fEki-dva~Rsctvsln~p~~-~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 421 LPQNLGEEFSLIGVKI-RNVNFEKI-DVADRSCTVSLNCPNH-RVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhhHHhHHhHhhccc-cccceEee-ccccceEEEEecCCCC-ccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 4466788888775543 35656655 3344566777776443 334444 47889999999975 689998765
No 37
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=71.60 E-value=17 Score=27.96 Aligned_cols=60 Identities=22% Similarity=0.297 Sum_probs=36.0
Q ss_pred HHHHHHHHhhCCCCCe-EEEecCCCCceeEEEEEECCCCCCCCC--cEEEEEEeCCCCCCCCCCeee
Q 031982 10 LQKQLKDLCKNPVAGF-SAGLVDETNIFEWSVTIIGPPDTLYEG--GFFNAIMSFPSNYPNSPPTVK 73 (149)
Q Consensus 10 L~~El~~l~~~~~~~~-~~~~~~~~n~~~w~v~i~gp~~t~y~g--g~f~~~i~fp~~YP~~pP~i~ 73 (149)
...|+..|....+..+ .+ . ..+...+.+.|. ...+-++. +.+.+.++++++||..+|-|.
T Consensus 7 Qe~E~EaLeSIY~de~~~i--~-~~~~~~f~v~iq-~e~~e~d~~~~~~~l~~s~tEnYPDe~Pli~ 69 (215)
T KOG4018|consen 7 QEEELEALESIYPDEFKHI--N-SEDPPIFEVTIQ-YEEGENDEPKGSFILVFSLTENYPDEAPLIE 69 (215)
T ss_pred HHHHHHHHHHhccchhhhh--h-ccCCccceeeee-cccccCCCccccEEEEEEccCCCCCCCccee
Confidence 3456666655444333 22 1 234444666775 22222222 278999999999999999993
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=63.83 E-value=21 Score=29.25 Aligned_cols=42 Identities=24% Similarity=0.506 Sum_probs=33.9
Q ss_pred ceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEec-ccccCc
Q 031982 35 IFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTT-EIWHPN 82 (149)
Q Consensus 35 ~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t-~i~Hpn 82 (149)
...+.+.| ||.|..++-+|.|...||..||.+.|-. .-|+|-
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 34566666 6999999999999999999999999963 347773
No 39
>smart00340 HALZ homeobox associated leucin zipper.
Probab=61.60 E-value=7.3 Score=22.11 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhhC
Q 031982 6 ASLLLQKQLKDLCKN 20 (149)
Q Consensus 6 ~~~RL~~El~~l~~~ 20 (149)
-.+||++|+++|...
T Consensus 20 eNrRL~ke~~eLral 34 (44)
T smart00340 20 ENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHhc
Confidence 358999999999763
No 40
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=59.90 E-value=16 Score=26.90 Aligned_cols=20 Identities=40% Similarity=0.713 Sum_probs=14.8
Q ss_pred eccccc---CccCCCCcEEeecC
Q 031982 75 TTEIWH---PNVYPDGRVCISIL 94 (149)
Q Consensus 75 ~t~i~H---pnv~~~G~iCl~~l 94 (149)
.|++|| +||+.+|+||+...
T Consensus 89 ~T~Ly~aPf~NV~~~g~vC~G~~ 111 (175)
T PF14460_consen 89 DTPLYHAPFFNVYSNGSVCWGNN 111 (175)
T ss_pred CCeeEeCCccccCCCCcEeeCCC
Confidence 345566 49999999999553
No 41
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=48.01 E-value=35 Score=26.50 Aligned_cols=18 Identities=28% Similarity=0.746 Sum_probs=13.4
Q ss_pred ccccc---CccCCCCcEEeec
Q 031982 76 TEIWH---PNVYPDGRVCISI 93 (149)
Q Consensus 76 t~i~H---pnv~~~G~iCl~~ 93 (149)
|++|| .||+.+|+||+..
T Consensus 131 T~L~~aPffNV~~~G~VC~G~ 151 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGN 151 (228)
T ss_pred CeeccCCcCccCCCCeEeeCC
Confidence 34555 3899999999953
No 42
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=42.76 E-value=33 Score=28.15 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=21.8
Q ss_pred CcEEEEEEeCCCCCCCCCCeeeEec
Q 031982 52 GGFFNAIMSFPSNYPNSPPTVKFTT 76 (149)
Q Consensus 52 gg~f~~~i~fp~~YP~~pP~i~f~t 76 (149)
+=.|-++|.+|..||...|.++|.+
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe
Confidence 3458889999999999999999876
No 43
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=42.72 E-value=40 Score=23.96 Aligned_cols=25 Identities=28% Similarity=0.626 Sum_probs=22.2
Q ss_pred CcEEEEEEeCCCCCC-CCCCeeeEec
Q 031982 52 GGFFNAIMSFPSNYP-NSPPTVKFTT 76 (149)
Q Consensus 52 gg~f~~~i~fp~~YP-~~pP~i~f~t 76 (149)
.|.|.|.-.+|-.|| ..||.|.|.-
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 489999999999999 9999998754
No 44
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=40.74 E-value=57 Score=24.52 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCC
Q 031982 6 ASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPP 46 (149)
Q Consensus 6 ~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~ 46 (149)
..+|+++|++++.++.-..++.-|. -+..-.+.|.++.-+
T Consensus 120 ~~~~iq~EIraviRQItasVtfLP~-Le~~ctFdvLiyTdk 159 (203)
T KOG3285|consen 120 DLKRIQNEIRAVIRQITASVTFLPL-LEEICTFDVLIYTDK 159 (203)
T ss_pred HHHHHHHHHHHHHHHHhhheeeccc-ccceeEEEEEEEeCC
Confidence 4689999999999988878877665 556678888887433
No 45
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=40.67 E-value=97 Score=20.00 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=26.1
Q ss_pred eeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecc
Q 031982 36 FEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTE 77 (149)
Q Consensus 36 ~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~ 77 (149)
++|.|.+.|+.+.--..-+=++.+.+.++|+. |...+..+
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~p 41 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKP 41 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSST
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCC
Confidence 58999999877754445566788889899875 55444444
No 46
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=39.30 E-value=82 Score=20.80 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=20.8
Q ss_pred CCCcEEEEEEeCCCCCCCCCCeeeEecc
Q 031982 50 YEGGFFNAIMSFPSNYPNSPPTVKFTTE 77 (149)
Q Consensus 50 y~gg~f~~~i~fp~~YP~~pP~i~f~t~ 77 (149)
-+|..+.|...-|..|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 45777888888899999 589988865
No 47
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=39.18 E-value=47 Score=24.87 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=22.4
Q ss_pred CcEEEEEEeCCCCCCCCCCeeeEec
Q 031982 52 GGFFNAIMSFPSNYPNSPPTVKFTT 76 (149)
Q Consensus 52 gg~f~~~i~fp~~YP~~pP~i~f~t 76 (149)
.|.|.|.=.+|--||..+|.|.|.-
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEEE
Confidence 4889999999999999999998864
No 48
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=36.14 E-value=44 Score=27.23 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=21.9
Q ss_pred cEEEEEEeCCCCCCCCCCeeeEecc
Q 031982 53 GFFNAIMSFPSNYPNSPPTVKFTTE 77 (149)
Q Consensus 53 g~f~~~i~fp~~YP~~pP~i~f~t~ 77 (149)
-.+.+.+..++.||...|+|....+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4677889999999999999998765
No 49
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=32.00 E-value=36 Score=20.76 Aligned_cols=13 Identities=31% Similarity=0.381 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhh
Q 031982 7 SLLLQKQLKDLCK 19 (149)
Q Consensus 7 ~~RL~~El~~l~~ 19 (149)
.+||++||+++--
T Consensus 36 r~rL~kEL~d~D~ 48 (59)
T PF12065_consen 36 RQRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHHccc
Confidence 5799999999843
No 50
>smart00107 BTK Bruton's tyrosine kinase Cys-rich motif. Zinc-binding motif containing conserved cysteines and a histidine. Always found C-terminal to PH domains (but not all PH domains are followed by BTK motifs). The crystal structure shows this motif packs against the PH domain. The PH+Btk module pair has been called the Tec homology (TH) region.
Probab=31.39 E-value=21 Score=19.48 Aligned_cols=17 Identities=29% Similarity=0.809 Sum_probs=12.6
Q ss_pred cccCccCCCCc-EEeecC
Q 031982 78 IWHPNVYPDGR-VCISIL 94 (149)
Q Consensus 78 i~Hpnv~~~G~-iCl~~l 94 (149)
-|||.++.+|+ .|+...
T Consensus 7 ~yHP~~~~~G~W~CC~q~ 24 (36)
T smart00107 7 KYHPSFWVDGKWLCCQQS 24 (36)
T ss_pred ccCCCceeCCeEccCCCc
Confidence 48999998765 777544
No 51
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=31.08 E-value=79 Score=22.95 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=21.8
Q ss_pred CcEEEEEEeCCCCCC-----CCCCeeeEec
Q 031982 52 GGFFNAIMSFPSNYP-----NSPPTVKFTT 76 (149)
Q Consensus 52 gg~f~~~i~fp~~YP-----~~pP~i~f~t 76 (149)
.|.|.|.-.+|--|| ..||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 388999999999999 8999998754
No 52
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=28.57 E-value=21 Score=26.96 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=22.2
Q ss_pred CCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHH
Q 031982 86 DGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIIS 126 (149)
Q Consensus 86 ~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~ 126 (149)
.+..|+++|. ..|+|.+|.++.+.-++.
T Consensus 135 ~~~f~~sIlD-------------r~Y~pdmt~eea~~lmkK 162 (200)
T KOG0177|consen 135 GSYFCLSILD-------------RYYKPDMTIEEALDLMKK 162 (200)
T ss_pred hhhhhHHHHH-------------hhhCCCCCHHHHHHHHHH
Confidence 4569999997 899999998877655543
No 53
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=27.78 E-value=64 Score=19.50 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=12.4
Q ss_pred CCCCccCcHHHHHHHHHHhh
Q 031982 109 ERWMPVHTVESIVLSIISML 128 (149)
Q Consensus 109 ~~W~p~~~i~~il~~i~~~l 128 (149)
-+|.|.++|.+++.......
T Consensus 36 LgW~p~~~L~~~i~~~w~W~ 55 (62)
T PF13950_consen 36 LGWKPKYSLEDMIRDAWNWQ 55 (62)
T ss_dssp C----SSSHHHHHHHHHHHH
T ss_pred hCCCcCCCHHHHHHHHHHHH
Confidence 47999999999998765543
No 54
>KOG3696 consensus Aspartyl beta-hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=26.82 E-value=1.2e+02 Score=24.88 Aligned_cols=36 Identities=36% Similarity=0.636 Sum_probs=25.2
Q ss_pred CCcEEEEEEeCCCCC-----CCCCCeeeEecccccCccCCC
Q 031982 51 EGGFFNAIMSFPSNY-----PNSPPTVKFTTEIWHPNVYPD 86 (149)
Q Consensus 51 ~gg~f~~~i~fp~~Y-----P~~pP~i~f~t~i~Hpnv~~~ 86 (149)
+|...-++.+|=..- +-..|+|.|.-.+|||||-+.
T Consensus 286 ~g~~ll~ddsf~ha~~~dgs~eds~rvV~~V~lwhpevq~~ 326 (334)
T KOG3696|consen 286 EGKCLLYDDSFLHALQHDGSSEDSPRVVFTVDLWHPEVQPA 326 (334)
T ss_pred ccceeEeechhhcccccCCCcccCceEEEEEeccCcccccc
Confidence 445555566654333 346899999999999999754
No 55
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=26.00 E-value=69 Score=22.72 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=21.2
Q ss_pred CCCCceeEEEEEECCCCCCCC-CcEEEEEEeC
Q 031982 31 DETNIFEWSVTIIGPPDTLYE-GGFFNAIMSF 61 (149)
Q Consensus 31 ~~~n~~~w~v~i~gp~~t~y~-gg~f~~~i~f 61 (149)
.+.|...|.|++.|++||+.. ..+|-+.+.|
T Consensus 43 qPGd~~~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 43 QPGDPEWYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred cCCCCcceEEEEECCCCcceeccccchheeeH
Confidence 356778899999999998875 3444444333
No 56
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=25.85 E-value=1.8e+02 Score=24.80 Aligned_cols=15 Identities=20% Similarity=0.397 Sum_probs=12.2
Q ss_pred cEEEEEEeCCCCCCC
Q 031982 53 GFFNAIMSFPSNYPN 67 (149)
Q Consensus 53 g~f~~~i~fp~~YP~ 67 (149)
-...+.++||.+|+.
T Consensus 209 e~k~i~vtFP~dy~a 223 (441)
T COG0544 209 EEKDIKVTFPEDYHA 223 (441)
T ss_pred CeeEEEEEcccccch
Confidence 346688999999995
No 57
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=25.73 E-value=22 Score=18.83 Aligned_cols=17 Identities=24% Similarity=0.741 Sum_probs=10.1
Q ss_pred cccCccCCCCc-EEeecC
Q 031982 78 IWHPNVYPDGR-VCISIL 94 (149)
Q Consensus 78 i~Hpnv~~~G~-iCl~~l 94 (149)
.|||.++.+|+ .|+...
T Consensus 2 ~yHPg~~~~g~W~CC~q~ 19 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCKQT 19 (32)
T ss_dssp EE-SS-EETTCESSSS-S
T ss_pred CcCCCcccCCcCcCCCCc
Confidence 48999998766 777544
No 58
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=24.56 E-value=25 Score=32.28 Aligned_cols=25 Identities=16% Similarity=0.456 Sum_probs=0.0
Q ss_pred cEEEEEEeCCCCCCCCCCeeeEecc
Q 031982 53 GFFNAIMSFPSNYPNSPPTVKFTTE 77 (149)
Q Consensus 53 g~f~~~i~fp~~YP~~pP~i~f~t~ 77 (149)
.+=.+.|++|.+||..+|.+.+.+.
T Consensus 714 ~VPPl~l~vP~~YP~~sp~~~~~~~ 738 (799)
T PF09606_consen 714 SVPPLRLTVPADYPRQSPQCSVDRD 738 (799)
T ss_dssp -------------------------
T ss_pred CCCCeeEeCCCCCCccCCcCcccHH
Confidence 4445789999999999999877554
No 59
>PF09362 DUF1996: Domain of unknown function (DUF1996); InterPro: IPR018535 This family of proteins are functionally uncharacterised.
Probab=23.56 E-value=94 Score=24.07 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=12.5
Q ss_pred CCCCCCCCCCeeeEeccc
Q 031982 61 FPSNYPNSPPTVKFTTEI 78 (149)
Q Consensus 61 fp~~YP~~pP~i~f~t~i 78 (149)
-|+.||.+-|+|.|....
T Consensus 180 CP~~hPv~iP~l~~e~~y 197 (233)
T PF09362_consen 180 CPAGHPVRIPQLFYEVIY 197 (233)
T ss_pred CCCCCccccceEEEEEEE
Confidence 356777778888776653
No 60
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=23.30 E-value=1.7e+02 Score=23.15 Aligned_cols=28 Identities=18% Similarity=0.406 Sum_probs=20.9
Q ss_pred cEEEEEEeCC-----CCCCCCCCeeeEeccccc
Q 031982 53 GFFNAIMSFP-----SNYPNSPPTVKFTTEIWH 80 (149)
Q Consensus 53 g~f~~~i~fp-----~~YP~~pP~i~f~t~i~H 80 (149)
+.|+.++++. .+-||++|+|..+++-|.
T Consensus 123 ak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft 155 (276)
T PF00845_consen 123 AKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFT 155 (276)
T ss_pred eeeeceeeecccccccccccCCCceEeeecccC
Confidence 3455666654 688999999999998553
No 61
>CHL00130 rbcS ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit; Reviewed
Probab=22.73 E-value=2.6e+02 Score=20.01 Aligned_cols=33 Identities=6% Similarity=-0.101 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEE
Q 031982 7 SLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSV 40 (149)
Q Consensus 7 ~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v 40 (149)
...+..|++++.+..+.. .+.++.-||...+.+
T Consensus 61 ~~~Vl~Ei~~CrkayP~~-yIRl~gFDn~rq~Q~ 93 (138)
T CHL00130 61 PAAVMFEINECRKQKPNG-YIKVNAFDASRGVES 93 (138)
T ss_pred HHHHHHHHHHHHHHCCCc-EEEEEEeeCCCcEEE
Confidence 457889999998877544 355555678888877
No 62
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=22.12 E-value=81 Score=24.22 Aligned_cols=56 Identities=18% Similarity=0.450 Sum_probs=42.7
Q ss_pred CCCCeeeEecccccCccC--CCCcEEeecCCCCCCCCCCCCCCCCCC--CccCcHHHHHHHHHHhhcCCCCCC
Q 031982 67 NSPPTVKFTTEIWHPNVY--PDGRVCISILHPPGDDPNGYELASERW--MPVHTVESIVLSIISMLSSPNDES 135 (149)
Q Consensus 67 ~~pP~i~f~t~i~Hpnv~--~~G~iCl~~l~~~~~~~~~~~~~~~~W--~p~~~i~~il~~i~~~l~~p~~~~ 135 (149)
..||.|.|-.+.|.--|+ +-|.|...+-+ .+| -|.-.+.+-|..|..+|..|+.++
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelan-------------agrplfpg~dvddqlkrif~~lg~p~ed~ 226 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELAN-------------AGRPLFPGNDVDDQLKRIFRLLGTPTEDQ 226 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhh-------------cCCCCCCCCcHHHHHHHHHHHhCCCcccc
Confidence 469999999999888776 46766666654 555 567788888999988888886443
No 63
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=21.31 E-value=1.4e+02 Score=22.48 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=19.8
Q ss_pred CcEEEEEEeCCCCCCC-----CCCeeeEe
Q 031982 52 GGFFNAIMSFPSNYPN-----SPPTVKFT 75 (149)
Q Consensus 52 gg~f~~~i~fp~~YP~-----~pP~i~f~ 75 (149)
.|.|.|.-..|-.||. .||.|.|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3889999999999998 77777664
No 64
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=21.00 E-value=2.9e+02 Score=18.98 Aligned_cols=55 Identities=13% Similarity=0.220 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCC
Q 031982 8 LLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSN 64 (149)
Q Consensus 8 ~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~ 64 (149)
+...+++.+.++....|+.+...-.+ ....+.+.-+.|.|..+....+.+..|.+
T Consensus 43 ~~y~~~i~~~~~a~~lg~~~~~~~~~--~~~~i~~~d~~g~~~~~~~~~l~l~rp~~ 97 (146)
T PF05751_consen 43 LAYNQDIDRERAAEALGWKAELTIDD--NSLTIRLTDPNGAPVSGAKLTLSLYRPTD 97 (146)
T ss_pred hhhhhhhHHHHHHHhcCccceeeecC--CeEEEEEEcCCCCcCcCceEEEEEECCCC
Confidence 34556666666655666655443122 34444554477888888888888777754
No 65
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=20.88 E-value=2.6e+02 Score=21.43 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=10.7
Q ss_pred CCeeeEecc--cccCccCC
Q 031982 69 PPTVKFTTE--IWHPNVYP 85 (149)
Q Consensus 69 pP~i~f~t~--i~Hpnv~~ 85 (149)
-|.+.|.|- +.|-..++
T Consensus 83 gp~LsFdTyN~~iH~~s~p 101 (235)
T PF14135_consen 83 GPVLSFDTYNEYIHYFSDP 101 (235)
T ss_pred ceEEEEEeCCceEEEccCC
Confidence 377778664 56765554
No 66
>TIGR03615 RutF pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.
Probab=20.49 E-value=3.3e+02 Score=19.40 Aligned_cols=66 Identities=20% Similarity=0.265 Sum_probs=41.9
Q ss_pred HHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecc---cccCccCCCCc
Q 031982 12 KQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTE---IWHPNVYPDGR 88 (149)
Q Consensus 12 ~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~---i~Hpnv~~~G~ 88 (149)
+++|+.......|+.+..... .+++ .|.+ +.-.. .--.+||.+.+.-. .-|+.+...|+
T Consensus 4 ~~fr~am~~~~~gV~vVT~~~-------------~~~~-~g~t--vss~~--svS~~PP~v~v~l~~~s~t~~~i~~s~~ 65 (156)
T TIGR03615 4 QAFRDAMSRLGAAVNIITTDG-------------PAGR-AGFT--ASAVC--SVTDTPPTLLVCLNRSASAYPAFKQNGT 65 (156)
T ss_pred HHHHHHHhccCCCeEEEEeec-------------CCCc-eeEE--EEeEe--eccCCCCEEEEEeCCCcchhHHHHhCCe
Confidence 578888888888887755311 1111 1211 11111 23467999988533 56888999999
Q ss_pred EEeecCC
Q 031982 89 VCISILH 95 (149)
Q Consensus 89 iCl~~l~ 95 (149)
+++++|.
T Consensus 66 F~VnvL~ 72 (156)
T TIGR03615 66 LCVNTLA 72 (156)
T ss_pred EEEEECc
Confidence 9999996
Done!