Query         031982
Match_columns 149
No_of_seqs    121 out of 1140
Neff          7.9 
Searched_HMMs 29240
Date          Mon Mar 25 12:44:12 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031982.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031982hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2ucz_A UBC7, ubiquitin conjuga 100.0 3.8E-49 1.3E-53  289.3  16.7  147    1-148     1-147 (165)
  2 3h8k_A Ubiquitin-conjugating e 100.0 7.7E-49 2.6E-53  287.4  17.1  146    4-149     2-147 (164)
  3 3rz3_A Ubiquitin-conjugating e 100.0 1.7E-48 5.8E-53  290.2  15.8  147    1-147     3-149 (183)
  4 2awf_A Ubiquitin-conjugating e 100.0 2.6E-48   9E-53  286.6  14.4  147    3-149    15-161 (172)
  5 1ayz_A UBC2, ubiquitin-conjuga 100.0 3.1E-47 1.1E-51  280.1  15.1  133    1-148     1-133 (169)
  6 4gpr_A Ubiquitin-conjugating e 100.0 4.9E-47 1.7E-51  274.5  15.5  133    3-149     2-134 (151)
  7 2aak_A UBC1, ubiquitin conjuga 100.0 7.9E-47 2.7E-51  273.7  15.1  133    1-148     1-133 (152)
  8 1zdn_A Ubiquitin-conjugating e 100.0 7.8E-47 2.7E-51  275.3  13.6  133    2-148    10-142 (158)
  9 2ayv_A Ubiquitin-conjugating e 100.0 1.4E-46 4.7E-51  276.0  14.9  131    4-148    20-150 (166)
 10 2c2v_B Ubiquitin-conjugating e 100.0 2.2E-47 7.7E-52  277.1  10.3  132    3-148     3-134 (154)
 11 1z2u_A Ubiquitin-conjugating e 100.0 1.7E-46 5.8E-51  271.4  14.8  132    3-148     2-133 (150)
 12 2e2c_A Ubiquitin conjugating e 100.0 1.8E-46 6.2E-51  272.9  14.5  130    4-148     8-137 (156)
 13 2c4o_A Ubiquitin-conjugating e 100.0   3E-46   1E-50  273.9  15.6  132    3-148    17-148 (165)
 14 1fxt_A Ubiquitin-conjugating e 100.0 1.3E-46 4.3E-51  271.8  12.6  131    6-149     2-133 (149)
 15 3rcz_B SUMO-conjugating enzyme 100.0 3.6E-46 1.2E-50  273.0  14.5  136    3-149     8-147 (163)
 16 2bep_A Ubiquitin-conjugating e 100.0 5.9E-46   2E-50  270.9  15.1  133    2-148     5-141 (159)
 17 2r0j_A Ubiquitin carrier prote 100.0 3.8E-46 1.3E-50  269.3  13.9  128    7-148     3-130 (149)
 18 2gjd_A Ubiquitin-conjugating e 100.0 3.8E-46 1.3E-50  271.4  14.0  137    1-149     1-141 (157)
 19 1yh2_A HSPC150 protein similar 100.0 7.9E-46 2.7E-50  272.7  15.6  136    3-148     2-137 (169)
 20 1yrv_A Ubiquitin-conjugating l 100.0 2.4E-46 8.3E-51  275.3  12.6  135    3-149    21-156 (169)
 21 1i7k_A Ubiquitin-conjugating e 100.0 4.7E-46 1.6E-50  275.9  13.5  131    3-148    28-158 (179)
 22 2grr_A Ubiquitin-conjugating e 100.0 8.3E-46 2.8E-50  270.6  14.4  136    2-148     4-143 (161)
 23 1jat_A Ubiquitin-conjugating e 100.0 2.8E-46 9.5E-51  271.6  10.5  130    5-148     5-134 (155)
 24 2f4z_A Tgtwinscan_2721 - E2 do 100.0 1.7E-45 5.8E-50  275.7  14.0  131    4-148    31-175 (193)
 25 3bzh_A Ubiquitin-conjugating e 100.0 4.6E-45 1.6E-49  273.7  15.7  131    4-148    47-177 (194)
 26 2pwq_A Ubiquitin conjugating e 100.0 1.3E-45 4.6E-50  280.5  12.4  133    3-149    21-154 (216)
 27 3k9o_A Ubiquitin-conjugating e 100.0 3.1E-45 1.1E-49  276.2  13.6  133    3-149     3-139 (201)
 28 3fn1_B NEDD8-conjugating enzym 100.0 4.9E-45 1.7E-49  267.9  13.7  137    4-148    13-150 (167)
 29 1wzv_A Ubiquitin-conjugating e 100.0 6.9E-45 2.4E-49  264.2  12.7  131    5-148     4-134 (155)
 30 1y8x_A Ubiquitin-conjugating e 100.0 1.3E-44 4.4E-49  264.1  13.6  130    4-149     5-134 (160)
 31 2y9m_A Ubiquitin-conjugating e 100.0 2.9E-44 9.9E-49  265.0  15.1  134    3-148     4-151 (172)
 32 1tte_A Ubiquitin-conjugating e 100.0 1.4E-45   5E-50  280.1   8.0  132    5-149     2-134 (215)
 33 3e46_A Ubiquitin-conjugating e 100.0 4.8E-44 1.6E-48  277.4  15.1  133    3-149    55-191 (253)
 34 2q0v_A Ubiquitin-conjugating e 100.0   1E-44 3.5E-49  263.5  10.6  132    3-148    19-156 (156)
 35 1c4z_D UBCH7, ubiquitin conjug 100.0 1.6E-44 5.6E-49  262.0  11.4  131    6-149     3-133 (154)
 36 2nvu_C NEDD8-conjugating enzym 100.0 2.8E-44 9.6E-49  266.7  12.6  131    3-149    24-154 (180)
 37 1jat_B Ubiquitin-conjugating e 100.0 7.2E-45 2.4E-49  259.6   7.3  131    1-145     2-138 (138)
 38 2onu_A Ubiquitin-conjugating e 100.0 3.1E-44   1E-48  260.1   6.6  127    5-148     2-130 (152)
 39 3o2u_A NEDD8-conjugating enzym 100.0 6.9E-43 2.4E-47  261.2  13.4  131    3-149    27-163 (190)
 40 2z5d_A Ubiquitin-conjugating e 100.0   1E-43 3.4E-48  263.3   8.1  127    5-149    25-153 (179)
 41 2a4d_A Ubiquitin-conjugating e 100.0 1.9E-42 6.6E-47  252.2  12.9  129    4-143    24-157 (160)
 42 2fo3_A Ubiquitin-conjugating e 100.0 4.7E-42 1.6E-46  241.3  13.4  117    4-134     5-122 (125)
 43 4ddg_A Ubiquitin-conjugating e 100.0 5.6E-42 1.9E-46  281.3  15.0  132    4-149     2-133 (399)
 44 4ds2_A Ubiquitin-conjugating e 100.0 7.8E-43 2.7E-47  256.2   8.2  132    4-149     7-155 (167)
 45 1yf9_A Ubiquitin carrier prote 100.0 8.7E-43   3E-47  256.8   8.4  126    5-148    12-139 (171)
 46 2h2y_A Ubiquitin-conjugating e 100.0 4.6E-41 1.6E-45  239.4  14.5  116    4-133    19-135 (136)
 47 2hlw_A Ubiquitin-conjugating e 100.0 8.2E-42 2.8E-46  251.3   7.8  128    4-142    34-166 (170)
 48 2a7l_A Hypothetical ubiquitin- 100.0 6.6E-40 2.3E-44  233.3  11.5  110    6-129    23-136 (136)
 49 3ceg_A Baculoviral IAP repeat- 100.0 1.7E-38 5.7E-43  252.9  11.5  138    2-146    73-224 (323)
 50 2f4w_A Ubiquitin-conjugating e 100.0 2.8E-37 9.5E-42  230.3  13.5  120    3-135    12-131 (187)
 51 1zuo_A Hypothetical protein LO 100.0 2.1E-37   7E-42  230.8   8.5  119    2-133    24-158 (186)
 52 2z6o_A UFM1-conjugating enzyme  99.9 1.6E-28 5.5E-33  177.6  -0.6  100    6-121    33-143 (172)
 53 3r3q_A Suppressor protein STP2  99.8 1.6E-20 5.4E-25  136.4   9.3  114    7-135    30-161 (162)
 54 3kpa_A Probable ubiquitin fold  99.8 2.1E-20 7.1E-25  132.6  -0.4   83    5-94     34-127 (168)
 55 3obq_A Tumor susceptibility ge  99.5 5.1E-14 1.7E-18  100.5   6.8  103    9-130    24-138 (146)
 56 2ebm_A RWD domain-containing p  96.8    0.01 3.6E-07   40.3   8.6   67    7-76     12-78  (128)
 57 3zqs_A E3 ubiquitin-protein li  95.8   0.067 2.3E-06   39.1   8.9   82    9-129     5-87  (186)
 58 2yz0_A Serine/threonine-protei  95.8    0.11 3.9E-06   35.5   9.6   68    7-77     12-86  (138)
 59 2day_A Ring finger protein 25;  95.7    0.03   1E-06   38.0   6.4   69    8-77     11-83  (128)
 60 2ebk_A RWD domain-containing p  94.9   0.058   2E-06   36.5   5.7   67    9-76     11-79  (128)
 61 1ukx_A GCN2, GCN2 EIF2alpha ki  93.7    0.53 1.8E-05   31.9   8.6   67    7-76     12-86  (137)
 62 2daw_A RWD domain containing p  93.5    0.53 1.8E-05   32.9   8.4   25   53-77     75-99  (154)
 63 2dax_A Protein C21ORF6; RWD do  90.0    0.22 7.6E-06   34.7   3.1   25   53-77     73-97  (152)
 64 3u3c_B Paxillin LD2 peptide; 4  57.2      10 0.00035   17.9   2.3   21    5-25      5-25  (26)
 65 2rf4_B DNA-directed RNA polyme  32.6      23 0.00079   22.3   1.8   12    6-17     63-74  (87)
 66 3rls_A YAF9, protein AF-9 homo  25.4 1.8E+02  0.0063   20.6   6.1   35   33-67     30-64  (175)
 67 2jrw_A Cyclic extended PEP.1;   25.4      25 0.00084   16.5   0.8   17   66-82      4-20  (26)
 68 1m46_B IQ4, IQ4 motif from MYO  24.7      48  0.0016   15.5   1.7   13    6-18      9-21  (26)
 69 3g9r_A Fusion complex of HIV-1  23.5      70  0.0024   17.0   2.4   15    4-18     27-41  (42)
 70 2bum_A Protocatechuate 3,4-dio  21.5      87   0.003   22.8   3.5   26   51-76    109-139 (209)

No 1  
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00  E-value=3.8e-49  Score=289.33  Aligned_cols=147  Identities=54%  Similarity=0.929  Sum_probs=137.5

Q ss_pred             CchHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEeccccc
Q 031982            1 MAASQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWH   80 (149)
Q Consensus         1 m~~~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~H   80 (149)
                      |++ .+.+||++|+++|++++++||++.+.+++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++||
T Consensus         1 M~~-~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   79 (165)
T 2ucz_A            1 MSK-TAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILH   79 (165)
T ss_dssp             -CH-HHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSC
T ss_pred             CCh-HHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCcc
Confidence            665 7899999999999999999999999866899999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccC
Q 031982           81 PNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWV  148 (149)
Q Consensus        81 pnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~  148 (149)
                      |||+.+|+||+++|++++.+..|++.+.++|+|+++|.+||++|+++|.+|++++|+|.+||++|+++
T Consensus        80 PNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~  147 (165)
T 2ucz_A           80 PNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDN  147 (165)
T ss_dssp             TTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTT
T ss_pred             CCCCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHC
Confidence            99999999999999876666666666678999999999999999999999999999999999999876


No 2  
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00  E-value=7.7e-49  Score=287.44  Aligned_cols=146  Identities=55%  Similarity=0.955  Sum_probs=138.9

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCcc
Q 031982            4 SQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNV   83 (149)
Q Consensus         4 ~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv   83 (149)
                      +.+.+||++|+++++++++.||++.+.+++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus         2 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV   81 (164)
T 3h8k_A            2 GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI   81 (164)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCC
Confidence            46899999999999999999999999866699999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccCC
Q 031982           84 YPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWVP  149 (149)
Q Consensus        84 ~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~~  149 (149)
                      +.+|+||+++|++++.+..+|+.+.++|+|++||.+||++|+++|.+|++++|+|.+||++|++++
T Consensus        82 ~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~  147 (164)
T 3h8k_A           82 YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDR  147 (164)
T ss_dssp             CTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCH
T ss_pred             CCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCH
Confidence            999999999999888888888888899999999999999999999999999999999999998763


No 3  
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00  E-value=1.7e-48  Score=290.17  Aligned_cols=147  Identities=52%  Similarity=0.995  Sum_probs=127.9

Q ss_pred             CchHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEeccccc
Q 031982            1 MAASQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWH   80 (149)
Q Consensus         1 m~~~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~H   80 (149)
                      |+++.+.|||++||++|+++++.||++.+.+++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus         3 m~~~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   82 (183)
T 3rz3_A            3 MGSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWH   82 (183)
T ss_dssp             --CCHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCC
T ss_pred             CcchHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCcc
Confidence            88889999999999999999999999996678899999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhccc
Q 031982           81 PNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLW  147 (149)
Q Consensus        81 pnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~  147 (149)
                      |||+++|+||+++|+++++++.+++...++|+|+++|++||++|+++|.+||+++|+|.|||++|++
T Consensus        83 PnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~  149 (183)
T 3rz3_A           83 PNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRK  149 (183)
T ss_dssp             TTBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHH
T ss_pred             CCCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Confidence            9999999999999986666655555556899999999999999999999999999999999999986


No 4  
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00  E-value=2.6e-48  Score=286.59  Aligned_cols=147  Identities=59%  Similarity=1.104  Sum_probs=114.6

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCc
Q 031982            3 ASQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPN   82 (149)
Q Consensus         3 ~~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpn   82 (149)
                      ++.+.+||++||++|+++++.||++.+.+++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++||||
T Consensus        15 ~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPN   94 (172)
T 2awf_A           15 VPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPN   94 (172)
T ss_dssp             CCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCC
Confidence            45689999999999999999999999986689999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccCC
Q 031982           83 VYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWVP  149 (149)
Q Consensus        83 v~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~~  149 (149)
                      |+.+|+||+++|.+++.+..||+...++|+|+++|++||++|+++|.+|++++|+|.|||++|++++
T Consensus        95 V~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~  161 (172)
T 2awf_A           95 VDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR  161 (172)
T ss_dssp             BCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC------------------
T ss_pred             CCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCc
Confidence            9999999999998655555556556689999999999999999999999999999999999999764


No 5  
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00  E-value=3.1e-47  Score=280.12  Aligned_cols=133  Identities=43%  Similarity=0.790  Sum_probs=127.2

Q ss_pred             CchHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEeccccc
Q 031982            1 MAASQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWH   80 (149)
Q Consensus         1 m~~~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~H   80 (149)
                      |+ +.+.+||++||++|+++++.|+.+.+. ++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus         1 Ms-~~a~~RL~kEl~~l~~~~~~gi~~~p~-~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~H   78 (169)
T 1ayz_A            1 MS-TPARRRLMRDFKRMKEDAPPGVSASPL-PDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFH   78 (169)
T ss_dssp             -C-CHHHHHHHHHHHHHHHSCCTTEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred             CC-hHHHHHHHHHHHHHHhCCCCCEEEEec-CCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCcc
Confidence            54 468999999999999999999999986 7899999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccC
Q 031982           81 PNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWV  148 (149)
Q Consensus        81 pnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~  148 (149)
                      |||+.+|+||+++|.             ++|+|+++|.+||++|+++|.+|++++|+|.+||++|+.+
T Consensus        79 PNI~~~G~ICl~iL~-------------~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d  133 (169)
T 1ayz_A           79 PNVYANGEICLDILQ-------------NRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDH  133 (169)
T ss_dssp             TTBCTTSBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHC
T ss_pred             CCCCCCCeEeehhhc-------------cCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHC
Confidence            999999999999997             8899999999999999999999999999999999999876


No 6  
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00  E-value=4.9e-47  Score=274.53  Aligned_cols=133  Identities=38%  Similarity=0.728  Sum_probs=127.9

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCc
Q 031982            3 ASQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPN   82 (149)
Q Consensus         3 ~~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpn   82 (149)
                      ++.+.+||++|+++++++++.|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus         2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~-~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   80 (151)
T 4gpr_A            2 AAMAMRRIQKELREIQQDPPCNCSAGPV-GDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPN   80 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEES-SSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEEc-CCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccce
Confidence            4568999999999999999999999986 789999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccCC
Q 031982           83 VYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWVP  149 (149)
Q Consensus        83 v~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~~  149 (149)
                      |+.+|+||+++|.             ++|+|+++|.+||++|+++|.+|++++|+|.|||++|+.++
T Consensus        81 v~~~G~iCl~iL~-------------~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~  134 (151)
T 4gpr_A           81 INKNGVICLDILK-------------DQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANK  134 (151)
T ss_dssp             BCTTCBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCH
T ss_pred             ECCCCEEEccccc-------------CCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCH
Confidence            9999999999997             89999999999999999999999999999999999998763


No 7  
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00  E-value=7.9e-47  Score=273.69  Aligned_cols=133  Identities=42%  Similarity=0.812  Sum_probs=127.5

Q ss_pred             CchHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEeccccc
Q 031982            1 MAASQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWH   80 (149)
Q Consensus         1 m~~~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~H   80 (149)
                      |+ +.+.+||++|+++++++++.|+.+.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus         1 Ms-~~a~~RL~~E~~~l~~~~~~~i~~~~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   78 (152)
T 2aak_A            1 MS-TPARKRLMRDFKRLQQDPPAGISGAPQ-DNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFH   78 (152)
T ss_dssp             CC-CHHHHHHHHHHHHHHHSCCTTEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred             CC-hHHHHHHHHHHHHHHhCCCCCEEEEeC-CCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCccc
Confidence            54 468999999999999999999999886 7899999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccC
Q 031982           81 PNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWV  148 (149)
Q Consensus        81 pnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~  148 (149)
                      |||+.+|+||+++|.             ++|+|+++|.+||.+|+++|.+|++++|+|.+||++|+.+
T Consensus        79 Pnv~~~G~iCl~iL~-------------~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~  133 (152)
T 2aak_A           79 PNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSES  133 (152)
T ss_dssp             TTBCTTSBBCCGGGT-------------TSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHC
T ss_pred             CCCCCCCEEechhhc-------------CCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHC
Confidence            999999999999996             8899999999999999999999999999999999999876


No 8  
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00  E-value=7.8e-47  Score=275.33  Aligned_cols=133  Identities=32%  Similarity=0.546  Sum_probs=127.6

Q ss_pred             chHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccC
Q 031982            2 AASQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHP   81 (149)
Q Consensus         2 ~~~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hp   81 (149)
                      ++..+.+||++||++|++++++||.+.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus        10 ~s~~~~~RL~kEl~~l~~~~~~gi~~~~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   88 (158)
T 1zdn_A           10 LPPHIIRLVYKEVTTLTADPPDGIKVFPN-EEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHP   88 (158)
T ss_dssp             SCHHHHHHHHHHHHHHHHSCCTTEEEEEC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCT
T ss_pred             cCHHHHHHHHHHHHHHHhCCCCCEEEEEC-CCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccC
Confidence            34568899999999999999999999885 88999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccC
Q 031982           82 NVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWV  148 (149)
Q Consensus        82 nv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~  148 (149)
                      ||+.+|+||+++|.             ++|+|+++|.+||++|+++|.+|++++|+|.|||++|+.+
T Consensus        89 nv~~~G~iCl~iL~-------------~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d  142 (158)
T 1zdn_A           89 NVGANGEICVNVLK-------------RDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLEN  142 (158)
T ss_dssp             TBCTTSBBCHHHHT-------------TTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHC
T ss_pred             CCCCCCEEehhhcC-------------CCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHC
Confidence            99999999999996             8899999999999999999999999999999999999876


No 9  
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00  E-value=1.4e-46  Score=275.97  Aligned_cols=131  Identities=42%  Similarity=0.793  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCcc
Q 031982            4 SQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNV   83 (149)
Q Consensus         4 ~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv   83 (149)
                      +.+.+||++|+++|+++++.|+.+.+. ++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus        20 ~~~~~RL~kEl~~l~~~~~~gi~~~~~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI   98 (166)
T 2ayv_A           20 QGALKRINKELNDLSKDPPTNCSAGPV-GDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNI   98 (166)
T ss_dssp             TTHHHHHHHHHHHHHHSCCTTEEEEEC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTB
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEc-CCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcC
Confidence            457899999999999999999999985 7899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccC
Q 031982           84 YPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWV  148 (149)
Q Consensus        84 ~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~  148 (149)
                      +.+|+||+++|.             ++|+|+++|.+||++|+++|.+|++++|+|.|||++|+.+
T Consensus        99 ~~~G~ICL~iL~-------------~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d  150 (166)
T 2ayv_A           99 NSQGAICLDILK-------------DQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSD  150 (166)
T ss_dssp             CTTCBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHC
T ss_pred             CCCCeEEccccc-------------ccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHC
Confidence            999999999997             8999999999999999999999999999999999999876


No 10 
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00  E-value=2.2e-47  Score=277.14  Aligned_cols=132  Identities=34%  Similarity=0.640  Sum_probs=124.5

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCc
Q 031982            3 ASQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPN   82 (149)
Q Consensus         3 ~~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpn   82 (149)
                      |..+.+||++|+++++++++.|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus         3 s~~~~~RL~kEl~~l~~~~~~~i~~~~~-~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   81 (154)
T 2c2v_B            3 SAGLPRRIIKETQRLLAEPVPGIKAEPD-ESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPN   81 (154)
T ss_dssp             SCSCCHHHHHHHHHHHHSCCTTEEEEEC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCEEEEEC-CCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCc
Confidence            4457899999999999999999999986 789999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccC
Q 031982           83 VYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWV  148 (149)
Q Consensus        83 v~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~  148 (149)
                      |+.+|+||+++|.             ++|+|+++|.+||++|+++|.+|+++||+|.|||++|+++
T Consensus        82 v~~~G~iCl~iL~-------------~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d  134 (154)
T 2c2v_B           82 VDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTN  134 (154)
T ss_dssp             BCTTCBBCCHHHH-------------TSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHH
T ss_pred             CccCCeEEchhcc-------------CCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHC
Confidence            9999999999996             8899999999999999999999999999999999999865


No 11 
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00  E-value=1.7e-46  Score=271.41  Aligned_cols=132  Identities=42%  Similarity=0.805  Sum_probs=127.0

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCc
Q 031982            3 ASQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPN   82 (149)
Q Consensus         3 ~~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpn   82 (149)
                      |..+.+||++|++++++++++|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus         2 s~~~~~RL~kEl~~l~~~~~~~~~~~~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   80 (150)
T 1z2u_A            2 SHMALKRIQKELQDLGRDPPAQCSAGPV-GDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN   80 (150)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCSSEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEEC-CCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCc
Confidence            4568899999999999999999999986 689999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccC
Q 031982           83 VYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWV  148 (149)
Q Consensus        83 v~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~  148 (149)
                      |+.+|+||+++|.             ++|+|+++|.+||.+|+++|.+|++++|+|.+||++|+.+
T Consensus        81 v~~~G~iCl~iL~-------------~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~  133 (150)
T 1z2u_A           81 INSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTD  133 (150)
T ss_dssp             BCTTCBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHC
T ss_pred             CCCCCeEeecccc-------------CCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHH
Confidence            9999999999997             8999999999999999999999999999999999999876


No 12 
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00  E-value=1.8e-46  Score=272.86  Aligned_cols=130  Identities=41%  Similarity=0.709  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCcc
Q 031982            4 SQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNV   83 (149)
Q Consensus         4 ~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv   83 (149)
                      +.+.+||++|++++++++++||.+.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus         8 ~~~~~RL~kEl~~l~~~~~~~i~~~p~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv   86 (156)
T 2e2c_A            8 HSVSKRLQQELRTLLMSGDPGITAFPD-GDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNV   86 (156)
T ss_dssp             CCHHHHHHHHHHHHHHHCCTTEEEEES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEEC-CCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCC
Confidence            458999999999999999999999885 7899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccC
Q 031982           84 YPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWV  148 (149)
Q Consensus        84 ~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~  148 (149)
                      +.+|+||+++|.             ++|+|+++|.+||++|+++|.+|++++|+|.|||++| ++
T Consensus        87 ~~~G~iCl~iL~-------------~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d  137 (156)
T 2e2c_A           87 DQSGNICLDILK-------------ENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SN  137 (156)
T ss_dssp             CTTCBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TC
T ss_pred             ccCceEECcccc-------------ccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cC
Confidence            999999999996             8899999999999999999999999999999999999 44


No 13 
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00  E-value=3e-46  Score=273.92  Aligned_cols=132  Identities=42%  Similarity=0.794  Sum_probs=127.0

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCc
Q 031982            3 ASQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPN   82 (149)
Q Consensus         3 ~~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpn   82 (149)
                      .+.+.+||++|+++++++++.||++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus        17 ~~~~~~RL~kEl~~l~~~~~~gi~~~p~-~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPn   95 (165)
T 2c4o_A           17 GSMALKRIHKELNDLARDPPAQCSAGPV-GDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN   95 (165)
T ss_dssp             CHHHHHHHHHHHHHHHSSCCTTEEEEES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTT
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCEEEEEc-CCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCc
Confidence            3568899999999999999999999986 789999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccC
Q 031982           83 VYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWV  148 (149)
Q Consensus        83 v~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~  148 (149)
                      |+.+|+||+++|.             ++|+|+++|.+||++|+++|.+|++++|+|.+||++|+.+
T Consensus        96 V~~~G~ICl~iL~-------------~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d  148 (165)
T 2c4o_A           96 INSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTD  148 (165)
T ss_dssp             BCTTCBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHC
T ss_pred             CCCCCeEeehhhc-------------CCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHH
Confidence            9999999999997             8999999999999999999999999999999999999876


No 14 
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00  E-value=1.3e-46  Score=271.83  Aligned_cols=131  Identities=34%  Similarity=0.684  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCccCC
Q 031982            6 ASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYP   85 (149)
Q Consensus         6 ~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~   85 (149)
                      +.+||++|++++++++++|+.+.+.+++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus         2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~   81 (149)
T 1fxt_A            2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS   81 (149)
T ss_dssp             CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred             hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence            45899999999999999999999975559999999999999999999999999999999999999999999999999998


Q ss_pred             -CCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccCC
Q 031982           86 -DGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWVP  149 (149)
Q Consensus        86 -~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~~  149 (149)
                       +|+||+++|.             ++|+|+++|.+||++|+++|.+|++++|+|.+||++|+.++
T Consensus        82 ~~G~iCl~iL~-------------~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~  133 (149)
T 1fxt_A           82 VTGAICLDILK-------------NAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDR  133 (149)
T ss_dssp             SSCCBCCHHHH-------------TSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCS
T ss_pred             CCCeEeCCcCC-------------CCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCH
Confidence             9999999996             88999999999999999999999999999999999999764


No 15 
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00  E-value=3.6e-46  Score=272.98  Aligned_cols=136  Identities=38%  Similarity=0.723  Sum_probs=126.7

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCC-C---CceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEeccc
Q 031982            3 ASQASLLLQKQLKDLCKNPVAGFSAGLVDE-T---NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEI   78 (149)
Q Consensus         3 ~~~~~~RL~~El~~l~~~~~~~~~~~~~~~-~---n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i   78 (149)
                      |..+.+||++||+++++++++|+.+.+.++ +   |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus         8 ~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i   87 (163)
T 3rcz_B            8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPL   87 (163)
T ss_dssp             -CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCC
Confidence            567999999999999999999999998733 1   899999999999999999999999999999999999999999999


Q ss_pred             ccCccCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccCC
Q 031982           79 WHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWVP  149 (149)
Q Consensus        79 ~Hpnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~~  149 (149)
                      |||||+.+|+||+++|..           .++|+|+++|.+||++|+++|.+|++++|+|.+||++|++++
T Consensus        88 ~HPnV~~~G~iCl~iL~~-----------~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~  147 (163)
T 3rcz_B           88 FHPNVYPSGTVCLSILNE-----------EEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDK  147 (163)
T ss_dssp             CSTTBCTTSBBCCGGGCT-----------TTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCH
T ss_pred             ccCCCCCCCcEeccccCC-----------CCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCH
Confidence            999999999999999972           247999999999999999999999999999999999998763


No 16 
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00  E-value=5.9e-46  Score=270.93  Aligned_cols=133  Identities=32%  Similarity=0.670  Sum_probs=125.8

Q ss_pred             chHHHHHHHHHHHHHHhhC---CCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEeccc
Q 031982            2 AASQASLLLQKQLKDLCKN---PVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEI   78 (149)
Q Consensus         2 ~~~~~~~RL~~El~~l~~~---~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i   78 (149)
                      |++.+.+||++|+++|+++   ++.|+.+.+. ++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|
T Consensus         5 Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i   83 (159)
T 2bep_A            5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKI   83 (159)
T ss_dssp             CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEEC-SSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred             chHHHHHHHHHHHHHHHhcCCCCCCCEEEEeC-CCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCC
Confidence            3457899999999999985   5789999986 67999999999999999999999999999999999999999999999


Q ss_pred             ccCccCC-CCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccC
Q 031982           79 WHPNVYP-DGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWV  148 (149)
Q Consensus        79 ~Hpnv~~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~  148 (149)
                      |||||+. +|+||+++|.             ++|+|+++|.+||++|+++|.+|++++|+|.+||++|+++
T Consensus        84 ~HPni~~~~G~iCl~iL~-------------~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~  141 (159)
T 2bep_A           84 WHPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQN  141 (159)
T ss_dssp             CBTTBCTTTCBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHC
T ss_pred             CccCCCCCCCEEeChhhh-------------ccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHC
Confidence            9999995 9999999997             7899999999999999999999999999999999999876


No 17 
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00  E-value=3.8e-46  Score=269.34  Aligned_cols=128  Identities=34%  Similarity=0.667  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCccCCC
Q 031982            7 SLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPD   86 (149)
Q Consensus         7 ~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~~   86 (149)
                      .+||++|++++++++++|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+
T Consensus         3 ~~RL~kEl~~l~~~~~~~i~~~~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~   81 (149)
T 2r0j_A            3 PRRITKETQNLANEPPPGIMAVPV-PENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL   81 (149)
T ss_dssp             CHHHHHHHHHHHHSCCTTEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTT
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEC-CCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCC
Confidence            589999999999999999999986 7899999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccC
Q 031982           87 GRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWV  148 (149)
Q Consensus        87 G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~  148 (149)
                      |+||+++|.             ++|+|+++|.+||++|+++|.+|+++||+|.+||++|+.+
T Consensus        82 G~iCl~iL~-------------~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~  130 (149)
T 2r0j_A           82 GRICLDILK-------------DKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQD  130 (149)
T ss_dssp             CBBCCGGGT-------------TTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHC
T ss_pred             CEEechhcC-------------CCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHC
Confidence            999999997             8999999999999999999999999999999999999876


No 18 
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00  E-value=3.8e-46  Score=271.42  Aligned_cols=137  Identities=36%  Similarity=0.667  Sum_probs=126.1

Q ss_pred             CchHHHHHHHHHHHHHHhhCCCCCeEEEecCC----CCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEec
Q 031982            1 MAASQASLLLQKQLKDLCKNPVAGFSAGLVDE----TNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTT   76 (149)
Q Consensus         1 m~~~~~~~RL~~El~~l~~~~~~~~~~~~~~~----~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t   76 (149)
                      |+ +.+.+||++|++++++++++|+.+.+.+.    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus         1 Ms-~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t   79 (157)
T 2gjd_A            1 MS-SLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPA   79 (157)
T ss_dssp             ---CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCT
T ss_pred             CC-hHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccC
Confidence            54 46899999999999999999999988632    48999999999999999999999999999999999999999999


Q ss_pred             ccccCccCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccCC
Q 031982           77 EIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWVP  149 (149)
Q Consensus        77 ~i~Hpnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~~  149 (149)
                      ++|||||+.+|+||+++|+.           .++|+|+++|.+||++|+++|.+|++++|+|.+||++|++++
T Consensus        80 ~i~HPnv~~~G~iCl~iL~~-----------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~  141 (157)
T 2gjd_A           80 GFYHPNVYPSGTICLSILNE-----------DQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNK  141 (157)
T ss_dssp             TCCCTTBCTTSBBCCGGGCT-----------TTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCH
T ss_pred             CCccCCCCCCCcEeeecccC-----------CCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCH
Confidence            99999999999999999972           137999999999999999999999999999999999998763


No 19 
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00  E-value=7.9e-46  Score=272.69  Aligned_cols=136  Identities=27%  Similarity=0.581  Sum_probs=127.9

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCc
Q 031982            3 ASQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPN   82 (149)
Q Consensus         3 ~~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpn   82 (149)
                      |..+.+||++|+++++++++.||++.+. ++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++||||
T Consensus         2 s~~~~~RL~kEl~~l~~~~~~gi~~~~~-~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPN   80 (169)
T 1yh2_A            2 SMQRASRLKRELHMLATEPPPGITCWQD-KDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPN   80 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEeC-CCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCcccc
Confidence            5678999999999999999999999885 789999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccC
Q 031982           83 VYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWV  148 (149)
Q Consensus        83 v~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~  148 (149)
                      |+.+|+||+++|+...         .++|+|+++|.+||++|+++|.+|++++|+|.|||++|+.+
T Consensus        81 v~~~G~iCl~iL~~~~---------~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~  137 (169)
T 1yh2_A           81 IDSAGRICLDVLKLPP---------KGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYN  137 (169)
T ss_dssp             BCTTCBBCCGGGSCTT---------TSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHC
T ss_pred             CCcCCeEecccccCCc---------ccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhh
Confidence            9999999999996211         27899999999999999999999999999999999999875


No 20 
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00  E-value=2.4e-46  Score=275.29  Aligned_cols=135  Identities=37%  Similarity=0.602  Sum_probs=127.2

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCc
Q 031982            3 ASQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPN   82 (149)
Q Consensus         3 ~~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpn   82 (149)
                      ++.+.+||++|+++|++++++|+.+.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus        21 ~~~a~~RL~kEl~~l~~~~~~gi~~~p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN   99 (169)
T 1yrv_A           21 HGRAYLLLHRDFCDLKENNYKGITAKPV-SEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPN   99 (169)
T ss_dssp             GCHHHHHHHHHHHHHHHHCCTTEEEEEC-STTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTT
T ss_pred             ChHHHHHHHHHHHHHHhCCCCCEEEEEc-CCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCc
Confidence            4578999999999999999999999886 789999999999999999999999999999999999999999999999999


Q ss_pred             c-CCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccCC
Q 031982           83 V-YPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWVP  149 (149)
Q Consensus        83 v-~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~~  149 (149)
                      | +.+|+||+++|..           .++|+|+++|.+||++|+++|.+|++++|+|.|||++|++++
T Consensus       100 I~~~~G~ICL~iL~~-----------~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~  156 (169)
T 1yrv_A          100 VDPHTGQPCIDFLDN-----------PEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDE  156 (169)
T ss_dssp             BCTTTCCBCCHHHHC-----------GGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCH
T ss_pred             ccCCCCeEeehhhcC-----------CcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCH
Confidence            9 7899999999951           268999999999999999999999999999999999998763


No 21 
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00  E-value=4.7e-46  Score=275.93  Aligned_cols=131  Identities=38%  Similarity=0.587  Sum_probs=124.6

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCc
Q 031982            3 ASQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPN   82 (149)
Q Consensus         3 ~~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpn   82 (149)
                      ++.+.+||++||++|++++++||.+.+. ++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++||||
T Consensus        28 ~~~~~~RL~kEl~~l~~~~~~gi~~~p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN  106 (179)
T 1i7k_A           28 RGPVGKRLQQELMTLMMSGDKGISAFPE-SDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPN  106 (179)
T ss_dssp             --CHHHHHHHHHHHHHHHCCTTEEEEEE-TTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTT
T ss_pred             ChHHHHHHHHHHHHHHhCCCCCEEEEEc-CCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCc
Confidence            4568899999999999999999999885 789999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccC
Q 031982           83 VYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWV  148 (149)
Q Consensus        83 v~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~  148 (149)
                      |+.+|+||+++|.             ++|+|+++|.+||++|+++|.+|++++|+|.+||++| .+
T Consensus       107 V~~~G~ICL~iL~-------------~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d  158 (179)
T 1i7k_A          107 VDTQGNISLDILK-------------EKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KN  158 (179)
T ss_dssp             BCTTCBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TS
T ss_pred             cccCCeEEcccCc-------------CcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hC
Confidence            9999999999996             8899999999999999999999999999999999999 54


No 22 
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00  E-value=8.3e-46  Score=270.65  Aligned_cols=136  Identities=38%  Similarity=0.667  Sum_probs=127.1

Q ss_pred             chHHHHHHHHHHHHHHhhCCCCCeEEEecC----CCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecc
Q 031982            2 AASQASLLLQKQLKDLCKNPVAGFSAGLVD----ETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTE   77 (149)
Q Consensus         2 ~~~~~~~RL~~El~~l~~~~~~~~~~~~~~----~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~   77 (149)
                      |++.+.+||++|+++|++++++|+.+.+..    ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus         4 M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   83 (161)
T 2grr_A            4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP   83 (161)
T ss_dssp             CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecC
Confidence            456789999999999999999999998762    3689999999999999999999999999999999999999999999


Q ss_pred             cccCccCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccC
Q 031982           78 IWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWV  148 (149)
Q Consensus        78 i~Hpnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~  148 (149)
                      +|||||+.+|+||+++|..           .++|+|+++|.+||++|+++|.+|++++|+|.+||++|+++
T Consensus        84 i~HPnv~~~G~iCl~iL~~-----------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~  143 (161)
T 2grr_A           84 LFHPNVYPSGTVCLSILEE-----------DKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQN  143 (161)
T ss_dssp             CCSTTBCTTSBBCCGGGCT-----------TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHC
T ss_pred             cccCCCCCCCeEeehhcCC-----------CCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHC
Confidence            9999999999999999971           14899999999999999999999999999999999999876


No 23 
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00  E-value=2.8e-46  Score=271.62  Aligned_cols=130  Identities=32%  Similarity=0.651  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCccC
Q 031982            5 QASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVY   84 (149)
Q Consensus         5 ~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~   84 (149)
                      .+.+||++|+++|++++++||.+.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus         5 ~~~~RL~kE~~~l~~~~~~~i~~~~~-~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~   83 (155)
T 1jat_A            5 SLPKRIIKETEKLVSDPVPGITAEPH-DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID   83 (155)
T ss_dssp             SCCHHHHHHHHHHHHSCCTTEEEEEE-TTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEEC-CCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCC
Confidence            46799999999999999999999886 78999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccC
Q 031982           85 PDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWV  148 (149)
Q Consensus        85 ~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~  148 (149)
                      .+|+||+++|.             ++|+|+++|.+||++|+++|.+|++++|+|.+||++|+.+
T Consensus        84 ~~G~iCl~iL~-------------~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~  134 (155)
T 1jat_A           84 RLGRICLDVLK-------------TNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKN  134 (155)
T ss_dssp             TTCCBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHC
T ss_pred             CCCEEEchhhc-------------cCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHC
Confidence            99999999996             8999999999999999999999999999999999999876


No 24 
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00  E-value=1.7e-45  Score=275.75  Aligned_cols=131  Identities=37%  Similarity=0.689  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHHHHhhCCC-------------CCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCC
Q 031982            4 SQASLLLQKQLKDLCKNPV-------------AGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPP   70 (149)
Q Consensus         4 ~~~~~RL~~El~~l~~~~~-------------~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP   70 (149)
                      ..+.+||++||++|+++++             .||.+.+. ++|+++|+++|.||++|||+||+|+++|.||++||++||
T Consensus        31 ~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP  109 (193)
T 2f4z_A           31 PREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIV-GGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPP  109 (193)
T ss_dssp             -CHHHHHHHHHHHHHHC----------------CEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred             CHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEc-CCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCC
Confidence            4578999999999999886             79999987 689999999999999999999999999999999999999


Q ss_pred             eeeEecccccCccC-CCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccC
Q 031982           71 TVKFTTEIWHPNVY-PDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWV  148 (149)
Q Consensus        71 ~i~f~t~i~Hpnv~-~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~  148 (149)
                      +|+|.|+||||||+ .+|+||+++|.             +.|+|+++|.+||++|+++|.+|++++|+|.+||++|+.+
T Consensus       110 ~V~F~T~i~HPNI~~~~G~ICL~iL~-------------~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d  175 (193)
T 2f4z_A          110 KMKFVTKIWHPNISSQTGAICLDILK-------------HEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIEN  175 (193)
T ss_dssp             EEEESSCCCBTTBCTTTCBBCCGGGT-------------TTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHC
T ss_pred             eEEEecCCccCCCcCCCCEEECcccc-------------ccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHC
Confidence            99999999999999 59999999997             7899999999999999999999999999999999999876


No 25 
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00  E-value=4.6e-45  Score=273.67  Aligned_cols=131  Identities=38%  Similarity=0.722  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCcc
Q 031982            4 SQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNV   83 (149)
Q Consensus         4 ~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv   83 (149)
                      +.+.+||++||++|+++++.||.+.+. ++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||||||
T Consensus        47 s~a~~RL~kEl~~l~~~~~~gi~~~p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV  125 (194)
T 3bzh_A           47 STSAKRIQKELADITLDPPPNCSAGPK-GDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNI  125 (194)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTB
T ss_pred             cHHHHHHHHHHHHHHhCCCCCceeecc-cCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceE
Confidence            568899999999999999999999986 7899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccC
Q 031982           84 YPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWV  148 (149)
Q Consensus        84 ~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~  148 (149)
                      +.+|.||+++|.             ++|+|+++|.+||++|+++|.+|++++|+|.+||++|+++
T Consensus       126 ~~~G~ICL~iL~-------------~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d  177 (194)
T 3bzh_A          126 NSQGVICLDILK-------------DNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTN  177 (194)
T ss_dssp             CTTCBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHC
T ss_pred             CCCCceechhhh-------------ccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHC
Confidence            999999999996             8999999999999999999999999999999999999876


No 26 
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00  E-value=1.3e-45  Score=280.49  Aligned_cols=133  Identities=39%  Similarity=0.770  Sum_probs=127.0

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCc
Q 031982            3 ASQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPN   82 (149)
Q Consensus         3 ~~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpn   82 (149)
                      ++.+.+||++|+++|++++++||.+.+. ++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||||
T Consensus        21 ~s~a~~RL~kEl~~l~~~~~~gi~~~p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPN   99 (216)
T 2pwq_A           21 GSKELLRLQKELKDIENENVQEIDAHIK-DSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPN   99 (216)
T ss_dssp             SCHHHHHHHHHHHHHHHSCTTTEEEEEC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             cCHHHHHHHHHHHHHHhCCCCCEEEEEc-CCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCC
Confidence            4578999999999999999999999996 789999999999999999999999999999999999999999999999999


Q ss_pred             cC-CCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccCC
Q 031982           83 VY-PDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWVP  149 (149)
Q Consensus        83 v~-~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~~  149 (149)
                      |+ .+|+||+++|.             +.|+|+++|.+||++|+++|.+|+++||+|.+||++|+.++
T Consensus       100 I~~~~G~ICL~iL~-------------~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~  154 (216)
T 2pwq_A          100 ISSQTGAICLDVLK-------------NEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENH  154 (216)
T ss_dssp             BCTTTCBBCCHHHH-------------HHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCH
T ss_pred             CcCCCCEEEchhhc-------------ccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCH
Confidence            99 48999999996             78999999999999999999999999999999999998763


No 27 
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00  E-value=3.1e-45  Score=276.16  Aligned_cols=133  Identities=33%  Similarity=0.691  Sum_probs=125.2

Q ss_pred             hHHHHHHHHHHHHHHhhC---CCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccc
Q 031982            3 ASQASLLLQKQLKDLCKN---PVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIW   79 (149)
Q Consensus         3 ~~~~~~RL~~El~~l~~~---~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~   79 (149)
                      ++.+.+||++||++|+++   ++.|+.+.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus         3 s~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~-~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~   81 (201)
T 3k9o_A            3 ANIAVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW   81 (201)
T ss_dssp             -CTTHHHHHHHHHHHHTCHHHHTTSEEEEEC-STTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCCEEEEEC-CCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcc
Confidence            346899999999999987   3679999997 789999999999999999999999999999999999999999999999


Q ss_pred             cCccCC-CCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccCC
Q 031982           80 HPNVYP-DGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWVP  149 (149)
Q Consensus        80 Hpnv~~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~~  149 (149)
                      ||||+. +|+||+++|.             ++|+|+++|.+||++|+++|.+|+++||+|.|||++|+.++
T Consensus        82 HPnv~~~~G~iCl~iL~-------------~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~  139 (201)
T 3k9o_A           82 HPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNP  139 (201)
T ss_dssp             BTTBCTTTCBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCH
T ss_pred             cCCCcCCCCeeeCcccc-------------cCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCH
Confidence            999995 9999999997             89999999999999999999999999999999999998763


No 28 
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00  E-value=4.9e-45  Score=267.94  Aligned_cols=137  Identities=30%  Similarity=0.544  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCcc
Q 031982            4 SQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNV   83 (149)
Q Consensus         4 ~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv   83 (149)
                      +.+.+||++||++|+++++.||++.+.+++|++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus        13 s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv   91 (167)
T 3fn1_B           13 SVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNI   91 (167)
T ss_dssp             CHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSB
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCC
Confidence            568999999999999999999999877678999999999 8999999999999999999999999999999999999999


Q ss_pred             CCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC-CCCCCcccHHHHHhcccC
Q 031982           84 YPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSS-PNDESPANVEAAVSYLWV  148 (149)
Q Consensus        84 ~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~-p~~~~p~n~e~a~~~~~~  148 (149)
                      +.+|+||+++|...       +...++|+|+++|.+||++|+++|.+ |++++|+|.|||++|+.+
T Consensus        92 ~~~G~iCl~iL~~~-------~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~  150 (167)
T 3fn1_B           92 TETGEICLSLLREH-------SIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRD  150 (167)
T ss_dssp             CTTCCBCCGGGSBC-------SSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHC
T ss_pred             CCCCEEechhhccC-------CCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHC
Confidence            99999999999731       11125899999999999999999999 699999999999999876


No 29 
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00  E-value=6.9e-45  Score=264.24  Aligned_cols=131  Identities=32%  Similarity=0.599  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCccC
Q 031982            5 QASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVY   84 (149)
Q Consensus         5 ~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~   84 (149)
                      .+.+||++|+++++++++.|+.+...+++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus         4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~   82 (155)
T 1wzv_A            4 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD   82 (155)
T ss_dssp             -CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCC
Confidence            367999999999999999999994445889999999999 9999999999999999999999999999999999999999


Q ss_pred             CCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccC
Q 031982           85 PDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWV  148 (149)
Q Consensus        85 ~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~  148 (149)
                      .+|+||+++|.            .++|+|+++|.+||++|+++|.+|++++|+|.+||++|+++
T Consensus        83 ~~G~iCl~iL~------------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~  134 (155)
T 1wzv_A           83 ENGQICLPIIS------------SENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQN  134 (155)
T ss_dssp             TTCBCCCGGGC------------TTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHC
T ss_pred             CCCeEeecCCC------------ccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Confidence            99999999994            28999999999999999999999999999999999999876


No 30 
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00  E-value=1.3e-44  Score=264.06  Aligned_cols=130  Identities=33%  Similarity=0.593  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCcc
Q 031982            4 SQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNV   83 (149)
Q Consensus         4 ~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv   83 (149)
                      +.+.+||++|++++  ++++|+++...+++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus         5 ~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv   81 (160)
T 1y8x_A            5 SAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNI   81 (160)
T ss_dssp             CHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred             cHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcC
Confidence            56889999999999  56789999844588999999998 9999999999999999999999999999999999999999


Q ss_pred             CCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccCC
Q 031982           84 YPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWVP  149 (149)
Q Consensus        84 ~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~~  149 (149)
                      +.+|+||+++|.             ++|+|+++|.+||++|+++|.+|++++|+|.+||++|++++
T Consensus        82 ~~~G~iCl~iL~-------------~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~  134 (160)
T 1y8x_A           82 DLEGNVCLNILR-------------EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNR  134 (160)
T ss_dssp             CTTCBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCH
T ss_pred             CCCCeEEcccch-------------hhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCH
Confidence            999999999997             88999999999999999999999999999999999998763


No 31 
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00  E-value=2.9e-44  Score=264.98  Aligned_cols=134  Identities=31%  Similarity=0.520  Sum_probs=122.3

Q ss_pred             hHHHHHHHHHHHHHHhh-C-C------CC---CeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCe
Q 031982            3 ASQASLLLQKQLKDLCK-N-P------VA---GFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPT   71 (149)
Q Consensus         3 ~~~~~~RL~~El~~l~~-~-~------~~---~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~   71 (149)
                      ++.+.+||++||++|++ . +      +.   ++.+.+++++|+++|+++|.||++|||+||.|+++|.||++||++||+
T Consensus         4 s~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~   83 (172)
T 2y9m_A            4 ADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPK   83 (172)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCE
T ss_pred             cHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCE
Confidence            35689999999999998 4 3      32   356666458899999999999999999999999999999999999999


Q ss_pred             eeEec-ccccCccC-CCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhccc-C
Q 031982           72 VKFTT-EIWHPNVY-PDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLW-V  148 (149)
Q Consensus        72 i~f~t-~i~Hpnv~-~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~-~  148 (149)
                      |+|.| +||||||+ .+|+||+++|+            .++|+|+++|.+||++|+++|.+|++++|+|.|||++|+. +
T Consensus        84 v~f~t~~i~HPni~~~~G~iCl~iL~------------~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d  151 (172)
T 2y9m_A           84 ISFMQNNILHCNVKSATGEICLNILK------------PEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGD  151 (172)
T ss_dssp             EEECTTSCCCTTEETTTTEECCGGGS------------TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTC
T ss_pred             EEEeeCCeecCCCcCCCCEEeccccC------------CCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCC
Confidence            99999 99999995 79999999996            2789999999999999999999999999999999999987 5


No 32 
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00  E-value=1.4e-45  Score=280.11  Aligned_cols=132  Identities=33%  Similarity=0.680  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCccC
Q 031982            5 QASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVY   84 (149)
Q Consensus         5 ~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~   84 (149)
                      .+.+||++|++++++++++||++.+.+++++++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus         2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~   81 (215)
T 1tte_A            2 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS   81 (215)
T ss_dssp             TTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSC
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCc
Confidence            36799999999999999999999987555677999999999999999999999999999999999999999999999999


Q ss_pred             C-CCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccCC
Q 031982           85 P-DGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWVP  149 (149)
Q Consensus        85 ~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~~  149 (149)
                      . +|+||+++|.             ++|+|++||.+||++|+++|.+|++++|+|.+||++|+.++
T Consensus        82 ~~~G~ICL~iL~-------------~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~  134 (215)
T 1tte_A           82 SVTGAICLDILR-------------NAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDR  134 (215)
T ss_dssp             SSSSCCCSSTTT-------------CCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCH
T ss_pred             CCCCEEECccCC-------------CCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCH
Confidence            9 9999999997             89999999999999999999999999999999999998763


No 33 
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00  E-value=4.8e-44  Score=277.37  Aligned_cols=133  Identities=33%  Similarity=0.691  Sum_probs=126.1

Q ss_pred             hHHHHHHHHHHHHHHhhC---CCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccc
Q 031982            3 ASQASLLLQKQLKDLCKN---PVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIW   79 (149)
Q Consensus         3 ~~~~~~RL~~El~~l~~~---~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~   79 (149)
                      ++.+.+||++||++|+++   ++.||.+.+. ++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||
T Consensus        55 s~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~-~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~  133 (253)
T 3e46_A           55 ANIAVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW  133 (253)
T ss_dssp             CHHHHHHHHHHHHHHHHCHHHHTTSEEEEEC-STTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCCEEEEEC-CCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCc
Confidence            457899999999999987   4679999997 789999999999999999999999999999999999999999999999


Q ss_pred             cCccCC-CCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccCC
Q 031982           80 HPNVYP-DGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWVP  149 (149)
Q Consensus        80 Hpnv~~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~~  149 (149)
                      ||||+. +|+||+++|.             ++|+|+++|.+||++|+++|.+|+++||+|.|||++|+.++
T Consensus       134 HPNV~~~~G~ICL~iL~-------------~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~  191 (253)
T 3e46_A          134 HPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNP  191 (253)
T ss_dssp             BTTBCTTTCBBCCGGGT-------------TCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCH
T ss_pred             cCCccCCCCeeeccccc-------------CCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCH
Confidence            999995 9999999997             89999999999999999999999999999999999998763


No 34 
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00  E-value=1e-44  Score=263.46  Aligned_cols=132  Identities=31%  Similarity=0.454  Sum_probs=121.1

Q ss_pred             hHHHHHHHHHHHHHHhhC-CCCCeEEEecCCC--CceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccc
Q 031982            3 ASQASLLLQKQLKDLCKN-PVAGFSAGLVDET--NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIW   79 (149)
Q Consensus         3 ~~~~~~RL~~El~~l~~~-~~~~~~~~~~~~~--n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~   79 (149)
                      +.++.+||++|+++++++ ++.|+++.+.+++  |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus        19 ~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~   98 (156)
T 2q0v_A           19 IVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIE   98 (156)
T ss_dssp             CCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred             cchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccc
Confidence            356789999999999998 7889999886433  5999999999999999999999999999999999999999999999


Q ss_pred             cCccCCCCcE---EeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccC
Q 031982           80 HPNVYPDGRV---CISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWV  148 (149)
Q Consensus        80 Hpnv~~~G~i---Cl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~  148 (149)
                      ||||+.+|+|   |+++|.              .|+|+++|++||++|+++|.+|++++|+|.+||++|++|
T Consensus        99 HPNV~~~G~icisCL~iL~--------------~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n  156 (156)
T 2q0v_A           99 MSCVDNCGRVIKNNLHILK--------------NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN  156 (156)
T ss_dssp             CTTBCTTSBBCGGGSHHHH--------------TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred             cCCCccCCeEehhhccccc--------------CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence            9999999999   888883              599999999999999999999999999999999999875


No 35 
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00  E-value=1.6e-44  Score=262.04  Aligned_cols=131  Identities=32%  Similarity=0.680  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCccCC
Q 031982            6 ASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYP   85 (149)
Q Consensus         6 ~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~   85 (149)
                      +.+||++|+++++++++.|+.+...+++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus         3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~   81 (154)
T 1c4z_D            3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE   81 (154)
T ss_dssp             -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCC
Confidence            56899999999999999999876666889999999998 99999999999999999999999999999999999999999


Q ss_pred             CCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccCC
Q 031982           86 DGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWVP  149 (149)
Q Consensus        86 ~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~~  149 (149)
                      +|+||+++|+            .++|+|+++|.+||++|+++|.+|++++|+|.+||++|+.++
T Consensus        82 ~G~iCl~iL~------------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~  133 (154)
T 1c4z_D           82 KGQVCLPVIS------------AENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDR  133 (154)
T ss_dssp             TCBBCCTTTS------------SSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCS
T ss_pred             CCEEECCCCC------------CCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhH
Confidence            9999999996            378999999999999999999999999999999999999764


No 36 
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00  E-value=2.8e-44  Score=266.69  Aligned_cols=131  Identities=33%  Similarity=0.566  Sum_probs=123.4

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCc
Q 031982            3 ASQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPN   82 (149)
Q Consensus         3 ~~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpn   82 (149)
                      ++.+.+||++|++++  ++++|+++...+++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus        24 ~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPN  100 (180)
T 2nvu_C           24 ASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPN  100 (180)
T ss_dssp             CCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred             ccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCC
Confidence            456899999999999  57789999844588999999998 999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccCC
Q 031982           83 VYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWVP  149 (149)
Q Consensus        83 v~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~~  149 (149)
                      |+.+|.||+++|.             ++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++++
T Consensus       101 V~~~G~iCl~iL~-------------~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~  154 (180)
T 2nvu_C          101 IDLEGNVALNILR-------------EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNR  154 (180)
T ss_dssp             BCTTSBBCCGGGT-------------TSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCH
T ss_pred             CCCCCcEEccccc-------------ccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCH
Confidence            9999999999997             88999999999999999999999999999999999998763


No 37 
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00  E-value=7.2e-45  Score=259.62  Aligned_cols=131  Identities=27%  Similarity=0.496  Sum_probs=119.5

Q ss_pred             CchHHHHHHHHHHHHHHhhC-CCCCeEEEecCCC--CceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecc
Q 031982            1 MAASQASLLLQKQLKDLCKN-PVAGFSAGLVDET--NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTE   77 (149)
Q Consensus         1 m~~~~~~~RL~~El~~l~~~-~~~~~~~~~~~~~--n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~   77 (149)
                      |+...+.+||++|+++++++ ++.|+++.+.+++  |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus         2 m~~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   81 (138)
T 1jat_B            2 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISK   81 (138)
T ss_dssp             -CCCCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred             cchHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcc
Confidence            77777889999999999998 7889999886444  49999999999999999999999999999999999999999999


Q ss_pred             cccCccCCC-CcE--EeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhc
Q 031982           78 IWHPNVYPD-GRV--CISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSY  145 (149)
Q Consensus        78 i~Hpnv~~~-G~i--Cl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~  145 (149)
                      ||||||+.+ |+|  |+++|              ++|+|+++|++||++|+++|.+|++++|+|.+||++|
T Consensus        82 i~HPnv~~~~G~i~~cL~~l--------------~~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y  138 (138)
T 1jat_B           82 INLPCVNPTTGEVQTDFHTL--------------RDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF  138 (138)
T ss_dssp             CCCTTBCTTTCBBCTTSHHH--------------HTCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred             cccCCEeCCCCEEeeecccC--------------CCCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence            999999986 999  89988              4799999999999999999999999999999999887


No 38 
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00  E-value=3.1e-44  Score=260.12  Aligned_cols=127  Identities=26%  Similarity=0.554  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCccC
Q 031982            5 QASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVY   84 (149)
Q Consensus         5 ~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~   84 (149)
                      ++.+||++|++++++.   |+.+.+. ++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus         2 sa~~Rl~kEl~~l~~~---~~~v~~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~   77 (152)
T 2onu_A            2 TSLTRKQCDFTKLIMA---GYDLELN-NGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVD   77 (152)
T ss_dssp             -CCCHHHHTHHHHHHH---TCCEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             hHHHHHHHHHHhcCcC---CCEEEEc-cCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCc
Confidence            4578999999999873   7888886 78999999999999999999999999999999999999999999999999999


Q ss_pred             C-CCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHH-HHHhhcCCCCCCcccHHHHHhcccC
Q 031982           85 P-DGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLS-IISMLSSPNDESPANVEAAVSYLWV  148 (149)
Q Consensus        85 ~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~-i~~~l~~p~~~~p~n~e~a~~~~~~  148 (149)
                      . +|+||+++|.             ++|+|+++|.+||++ |+++|.+|++++|+|.|||++|+++
T Consensus        78 ~~~G~iCl~il~-------------~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d  130 (152)
T 2onu_A           78 EASGSVCLDVIN-------------QTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKD  130 (152)
T ss_dssp             TTTCBBCHHHHH-------------HHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHC
T ss_pred             CcCCeEeccccc-------------ccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHC
Confidence            5 9999999996             789999999999999 6899999999999999999999876


No 39 
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00  E-value=6.9e-43  Score=261.20  Aligned_cols=131  Identities=28%  Similarity=0.474  Sum_probs=123.0

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEe---cCCCCce---eEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEec
Q 031982            3 ASQASLLLQKQLKDLCKNPVAGFSAGL---VDETNIF---EWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTT   76 (149)
Q Consensus         3 ~~~~~~RL~~El~~l~~~~~~~~~~~~---~~~~n~~---~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t   76 (149)
                      ++.+.+||++||++++  .++|+.+..   .+++|++   +|+++|. |++|||+||.|+++|.||++||++||+|+|.|
T Consensus        27 ~s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t  103 (190)
T 3o2u_A           27 LSAARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLK  103 (190)
T ss_dssp             CCHHHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECS
T ss_pred             ccHHHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEec
Confidence            3578999999999998  678999983   4688999   9999997 88899999999999999999999999999999


Q ss_pred             ccccCccCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccCC
Q 031982           77 EIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWVP  149 (149)
Q Consensus        77 ~i~Hpnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~~  149 (149)
                      ++|||||+.+|+||+++|.             ++|+|+++|.+||++|+++|.+|+++||+|.|||++|+.++
T Consensus       104 ~i~HPnV~~~G~iCl~iL~-------------~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~  163 (190)
T 3o2u_A          104 KIFHPNIDLKGNVCLNILR-------------EDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGE  163 (190)
T ss_dssp             CCCCTTBCTTSBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCH
T ss_pred             CcccCCCCCCCeEechhcc-------------CCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCH
Confidence            9999999999999999997             89999999999999999999999999999999999998763


No 40 
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00  E-value=1e-43  Score=263.27  Aligned_cols=127  Identities=28%  Similarity=0.595  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCccC
Q 031982            5 QASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVY   84 (149)
Q Consensus         5 ~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~   84 (149)
                      .+.+||++||+++++   .|+.+.+.  +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus        25 ~a~~RL~kEl~~l~~---~g~~v~~~--ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~   99 (179)
T 2z5d_A           25 PGKRRMDTDVIKLIE---SKHEVTIL--GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNID   99 (179)
T ss_dssp             HHHHHHHHHHHHHHH---SSSCEEEE--EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred             HHHHHHHHHHHhcCc---CCCEEEEC--CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCC
Confidence            588999999999985   57888875  5789999999999999999999999999999999999999999999999999


Q ss_pred             C-CCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHH-HHHhhcCCCCCCcccHHHHHhcccCC
Q 031982           85 P-DGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLS-IISMLSSPNDESPANVEAAVSYLWVP  149 (149)
Q Consensus        85 ~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~-i~~~l~~p~~~~p~n~e~a~~~~~~~  149 (149)
                      . +|+||+++|.             ++|+|+++|.+||++ |+++|.+|++++|+|.|||++|++++
T Consensus       100 ~~~G~ICL~iL~-------------~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~  153 (179)
T 2z5d_A          100 EASGTVCLDVIN-------------QTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRP  153 (179)
T ss_dssp             TTTCBBCHHHHH-------------HHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCH
T ss_pred             CCCCeEeccccc-------------cCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCH
Confidence            8 9999999996             789999999999999 99999999999999999999998763


No 41 
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00  E-value=1.9e-42  Score=252.24  Aligned_cols=129  Identities=25%  Similarity=0.449  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHHhhCCCCC-eEEEecCCCC--ceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEeccccc
Q 031982            4 SQASLLLQKQLKDLCKNPVAG-FSAGLVDETN--IFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWH   80 (149)
Q Consensus         4 ~~~~~RL~~El~~l~~~~~~~-~~~~~~~~~n--~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~H   80 (149)
                      .++.+||++|++++++++++| +++.+.+++|  +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus        24 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H  103 (160)
T 2a4d_A           24 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM  103 (160)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred             chHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCcee
Confidence            568899999999999998888 7787765665  8999999999999999999999999999999999999999999999


Q ss_pred             CccC-CCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhc-CCCCCCcccHHHHH
Q 031982           81 PNVY-PDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLS-SPNDESPANVEAAV  143 (149)
Q Consensus        81 pnv~-~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~-~p~~~~p~n~e~a~  143 (149)
                      |||+ .+|+||+++|..           .++|+|+++|++||++|+++|. +||+++|+|.|||.
T Consensus       104 PNV~~~~G~ICl~iL~~-----------~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa~  157 (160)
T 2a4d_A          104 NGVNSSNGVVDPRAISV-----------LAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQC  157 (160)
T ss_dssp             TTBCTTTCBBCGGGSHH-----------HHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTCB
T ss_pred             CCEECCCCEEehhhcCC-----------ccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhcc
Confidence            9999 699999999841           1689999999999999999995 69999999999983


No 42 
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00  E-value=4.7e-42  Score=241.31  Aligned_cols=117  Identities=33%  Similarity=0.641  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEeccc-ccCc
Q 031982            4 SQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEI-WHPN   82 (149)
Q Consensus         4 ~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i-~Hpn   82 (149)
                      +.+.+||++|+++++++++.|+.+.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ ||||
T Consensus         5 ~~a~~RL~kEl~~l~~~~~~~~~~~~~-~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPn   83 (125)
T 2fo3_A            5 GNANYRIQKELHNFLNNPPINCTLDVH-PNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTH   83 (125)
T ss_dssp             ----CHHHHHHHHHHHSCCTTEEEEEC-TTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTT
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEeC-cchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCc
Confidence            467899999999999999999999885 88999999999999999999999999999999999999999999996 9999


Q ss_pred             cCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCC
Q 031982           83 VYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDE  134 (149)
Q Consensus        83 v~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~  134 (149)
                      |+.+|+||+++|.             ++|+|+++|++||++|+++|.+|+.+
T Consensus        84 v~~~G~iCl~iL~-------------~~W~P~~~i~~vl~si~~ll~~p~~~  122 (125)
T 2fo3_A           84 VYSNGDICLSLLG-------------DDYNPSLSISGLVLSIISMLSSAKEK  122 (125)
T ss_dssp             BCTTSBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHC-----
T ss_pred             CCCCCEEEchhcC-------------CCCCCCCcHHHHHHHHHHHHhCcccc
Confidence            9999999999996             88999999999999999999999864


No 43 
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00  E-value=5.6e-42  Score=281.26  Aligned_cols=132  Identities=40%  Similarity=0.759  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCcc
Q 031982            4 SQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNV   83 (149)
Q Consensus         4 ~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv   83 (149)
                      +.+.|||++|++++++++++|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus         2 s~a~~RL~kEl~~l~~~~~~~~~~~p~-~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv   80 (399)
T 4ddg_A            2 AMALKRIHKELNDLARDPPAQCSAGPV-GDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI   80 (399)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSSEEEEEE-TTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTB
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEc-CCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeecccccccc
Confidence            468999999999999999999999986 7899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCcccHHHHHhcccCC
Q 031982           84 YPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAVSYLWVP  149 (149)
Q Consensus        84 ~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~e~a~~~~~~~  149 (149)
                      +++|+||+++|.             ++|+|+++|.+||++|+++|.+|+++||+|.|||++|++++
T Consensus        81 ~~~G~iCl~il~-------------~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~  133 (399)
T 4ddg_A           81 NSNGSISLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDR  133 (399)
T ss_dssp             CTTCBBCCGGGT-------------TSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCH
T ss_pred             CCCCeEeCcccc-------------cCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCH
Confidence            999999999997             89999999999999999999999999999999999998763


No 44 
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00  E-value=7.8e-43  Score=256.24  Aligned_cols=132  Identities=23%  Similarity=0.470  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHHHhhCC------------CCCeEEEecCCCCceeEEEEEECCCCCCCC--CcEEEEEEeCCCCCCCCC
Q 031982            4 SQASLLLQKQLKDLCKNP------------VAGFSAGLVDETNIFEWSVTIIGPPDTLYE--GGFFNAIMSFPSNYPNSP   69 (149)
Q Consensus         4 ~~~~~RL~~El~~l~~~~------------~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~--gg~f~~~i~fp~~YP~~p   69 (149)
                      +.+.|||++|+++|++++            ..++.+.+. ++|+++|+++|.||++|||+  ||.|+++|.||++||++|
T Consensus         7 ~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~p   85 (167)
T 4ds2_A            7 NISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVD-TDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEP   85 (167)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEE-ESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSC
T ss_pred             HHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeC-CCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCC
Confidence            457899999999999977            678888875 88999999999999999999  999999999999999999


Q ss_pred             CeeeEecccccCccCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHH-HHHHhhcC--CCCCCcccHHHHHhcc
Q 031982           70 PTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVL-SIISMLSS--PNDESPANVEAAVSYL  146 (149)
Q Consensus        70 P~i~f~t~i~Hpnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~-~i~~~l~~--p~~~~p~n~e~a~~~~  146 (149)
                      |+|+|.|++|||||+.+|+||+++|.             ++|+|++++.++|+ .|++++.+  |++++|+|.|||++|+
T Consensus        86 P~v~f~t~i~HPnv~~~G~iCl~il~-------------~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~  152 (167)
T 4ds2_A           86 PTVRFVTPVYSPLVTGEGGICDRMVN-------------DFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLE  152 (167)
T ss_dssp             CEEEESSCCCCSSCCTTSCCCTHHHH-------------TTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHH
T ss_pred             CEEEEeCCcccccCCCCCEEEcccCc-------------CCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHH
Confidence            99999999999999999999999996             89999999999765 56777764  8999999999999998


Q ss_pred             cCC
Q 031982          147 WVP  149 (149)
Q Consensus       147 ~~~  149 (149)
                      +++
T Consensus       153 ~d~  155 (167)
T 4ds2_A          153 KFP  155 (167)
T ss_dssp             HCH
T ss_pred             HCH
Confidence            763


No 45 
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00  E-value=8.7e-43  Score=256.78  Aligned_cols=126  Identities=29%  Similarity=0.515  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCccC
Q 031982            5 QASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVY   84 (149)
Q Consensus         5 ~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~   84 (149)
                      ++.+||++|++++++++. +  + .. ++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus        12 ~~~~RL~~El~~l~~~~~-~--v-~~-~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~   86 (171)
T 1yf9_A           12 RSNRRREMDYMRLCNSTR-K--V-YP-SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVD   86 (171)
T ss_dssp             -CCHHHHHHHHHHHSSSS-C--E-EE-CSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred             cHHHHHHHHHHHHHhCCC-C--C-CC-CCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCc
Confidence            568999999999999873 3  3 33 68999999999999999999999999999999999999999999999999999


Q ss_pred             C-CCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHH-HHhhcCCCCCCcccHHHHHhcccC
Q 031982           85 P-DGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSI-ISMLSSPNDESPANVEAAVSYLWV  148 (149)
Q Consensus        85 ~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i-~~~l~~p~~~~p~n~e~a~~~~~~  148 (149)
                      . +|+||+++|.             ++|+|+++|.+||++| +++|.+|++++|+|.+||++|+++
T Consensus        87 ~~~G~iCl~iL~-------------~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d  139 (171)
T 1yf9_A           87 ERSGSVCLDVIN-------------QTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHAD  139 (171)
T ss_dssp             TTTCBBCHHHHH-------------HHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHC
T ss_pred             ccCCeEeccccc-------------cCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHC
Confidence            5 9999999996             7899999999999997 799999999999999999999876


No 46 
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00  E-value=4.6e-41  Score=239.36  Aligned_cols=116  Identities=34%  Similarity=0.660  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEeccc-ccCc
Q 031982            4 SQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEI-WHPN   82 (149)
Q Consensus         4 ~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i-~Hpn   82 (149)
                      +.+.+||++|+++++++++.|+.+.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ ||||
T Consensus        19 ~~~~~RL~kEl~~l~~~~~~~~~~~~~-~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPn   97 (136)
T 2h2y_A           19 GNANYRIQKELNNFLKNPPINCTIDVH-PSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTH   97 (136)
T ss_dssp             TSHHHHHHHHHHHHHHSCCTTEEEEEC-TTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTT
T ss_pred             hHHHHHHHHHHHHHHhCCCCCeEEEec-cccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCc
Confidence            457899999999999999999999885 78999999999999999999999999999999999999999999996 9999


Q ss_pred             cCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCC
Q 031982           83 VYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPND  133 (149)
Q Consensus        83 v~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~  133 (149)
                      |+.+|+||+++|.             ++|+|+++|.+||++|+++|.+|+.
T Consensus        98 v~~~G~ICl~iL~-------------~~WsP~~ti~~vL~si~sll~~p~~  135 (136)
T 2h2y_A           98 VYSNGDICLSVLG-------------DDYNPSLSISGLILSIISMLSSAKE  135 (136)
T ss_dssp             BCTTCCBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCEEECcccc-------------CCCCCCCcHHHHHHHHHHHHhCcCc
Confidence            9999999999996             8899999999999999999999974


No 47 
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00  E-value=8.2e-42  Score=251.29  Aligned_cols=128  Identities=26%  Similarity=0.458  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHHHhhCCCCC-eEEEecCCCC--ceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEeccccc
Q 031982            4 SQASLLLQKQLKDLCKNPVAG-FSAGLVDETN--IFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWH   80 (149)
Q Consensus         4 ~~~~~RL~~El~~l~~~~~~~-~~~~~~~~~n--~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~H   80 (149)
                      .++.+||++||+++++++++| +++.+.+++|  +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus        34 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H  113 (170)
T 2hlw_A           34 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM  113 (170)
T ss_dssp             CCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEeccccc
Confidence            457899999999999998888 6777755554  9999999999999999999999999999999999999999999999


Q ss_pred             CccC-CCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC-CCCCCcccHHHH
Q 031982           81 PNVY-PDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSS-PNDESPANVEAA  142 (149)
Q Consensus        81 pnv~-~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~-p~~~~p~n~e~a  142 (149)
                      |||+ .+|+||+++|+.           .++|+|+++|++||++|+++|.+ ||+++|+|.|||
T Consensus       114 PNV~~~~G~ICl~iL~~-----------~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa  166 (170)
T 2hlw_A          114 NGVNSSNGVVDPRAISV-----------LAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ  166 (170)
T ss_dssp             SSBCSSSCBBCTTTCHH-----------HHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred             CCEeCCCCEEEhhhcCC-----------CCCCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence            9999 699999999841           16899999999999999999974 899999999998


No 48 
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00  E-value=6.6e-40  Score=233.26  Aligned_cols=110  Identities=45%  Similarity=0.773  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEE--ecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccc--cC
Q 031982            6 ASLLLQKQLKDLCKNPVAGFSAG--LVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIW--HP   81 (149)
Q Consensus         6 ~~~RL~~El~~l~~~~~~~~~~~--~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~--Hp   81 (149)
                      +.+||++|++++++++++|+.+.  + +++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|  ||
T Consensus        23 ~~~RL~kEl~~l~~~~~~gi~v~~~~-~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HP  101 (136)
T 2a7l_A           23 MQKRLQKELLALQNDPPPGMTLNEKS-VQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHP  101 (136)
T ss_dssp             SCHHHHHHHHHHHHSCCTTCCCCTTC-CCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBT
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEee-CccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCc
Confidence            34999999999999999999865  5 4789999999999999999999999999999999999999999999998  99


Q ss_pred             ccCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhc
Q 031982           82 NVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLS  129 (149)
Q Consensus        82 nv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~  129 (149)
                      ||+.+|+||+++|.             ++|+|+++|++||++|+++|.
T Consensus       102 NV~~~G~ICL~iL~-------------~~WsP~~ti~~vL~sI~slL~  136 (136)
T 2a7l_A          102 HVYSNGHICLSILT-------------EDWSPALSVQSVCLSIISMLS  136 (136)
T ss_dssp             TBCTTCBBCCGGGT-------------TTCCTTSCHHHHHHHHHHHTC
T ss_pred             cCCCCCeEEchhcC-------------CCCCCCCcHHHHHHHHHHHhC
Confidence            99999999999997             899999999999999999984


No 49 
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00  E-value=1.7e-38  Score=252.89  Aligned_cols=138  Identities=28%  Similarity=0.470  Sum_probs=120.3

Q ss_pred             chHHHHHHHHHHHHHHhhCCCCC----eEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecc
Q 031982            2 AASQASLLLQKQLKDLCKNPVAG----FSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTE   77 (149)
Q Consensus         2 ~~~~~~~RL~~El~~l~~~~~~~----~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~   77 (149)
                      ++..+.+||++|+++|++++++|    +.+.+. ++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+
T Consensus        73 ~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~-ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~  151 (323)
T 3ceg_A           73 NSAARARRLAQEAVTLSTSLPLSSSSSVFVRCD-EERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETT  151 (323)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEE-SSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCS
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCCcccceeeccc-CCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEecc
Confidence            45679999999999999988775    445554 7899999999999999999999999999999999999999999998


Q ss_pred             -----cccCccCCCCcEEeecCCCCCCCCCCCCCCCCCCCccC-cHHHHHHHHHHhhc--CCCCCCcccHHH--HHhcc
Q 031982           78 -----IWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVH-TVESIVLSIISMLS--SPNDESPANVEA--AVSYL  146 (149)
Q Consensus        78 -----i~Hpnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~-~i~~il~~i~~~l~--~p~~~~p~n~e~--a~~~~  146 (149)
                           +|||||+.+|+||+++|+++.+.      ..++|+|++ +|.+||++|+++|.  +|++++|+|.++  +.+|+
T Consensus       152 ~g~~~ifHPNV~~~G~ICLsiL~~~~g~------~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~  224 (323)
T 3ceg_A          152 GGHSVRFNPNLYNDGKVCLSILNTWHGR------PEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGT  224 (323)
T ss_dssp             TTTTCCCBTTBCTTCBBCCGGGTSSCCC------GGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHH
T ss_pred             CCCcccccCCCCcCCeEechhhccccCC------CcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhh
Confidence                 99999999999999999754321      126899999 89999999999996  677799999876  34554


No 50 
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00  E-value=2.8e-37  Score=230.31  Aligned_cols=120  Identities=27%  Similarity=0.560  Sum_probs=103.7

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCc
Q 031982            3 ASQASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPN   82 (149)
Q Consensus         3 ~~~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpn   82 (149)
                      ++.+.+||++|+++|++++++||.+.+. ++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+  |||
T Consensus        12 ~~~a~~RL~kEl~~l~~~~~~~i~~~p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~   88 (187)
T 2f4w_A           12 PTTATQRLKQDYLRIKKDPVPYICAEPL-PSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGR   88 (187)
T ss_dssp             --CHHHHHHHHHHHHHHSCCTTEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSS
T ss_pred             ccHHHHHHHHHHHHHHhCCCCCEEEEEc-CCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cce
Confidence            4568899999999999999999999886 7899999999999999999999999999999999999999999999  999


Q ss_pred             cCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCC
Q 031982           83 VYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDES  135 (149)
Q Consensus        83 v~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~~~  135 (149)
                      |+++|+||+++|..          +.++|+|+++|.+||++|+++|.+|+++.
T Consensus        89 ~~~~G~ICL~iL~~----------~~~~W~P~~ti~~vL~si~sll~~p~p~~  131 (187)
T 2f4w_A           89 FKCNTRLCLSITDF----------HPDTWNPAWSVSTILTGLLSFMVEKGPTL  131 (187)
T ss_dssp             BCTTSCBC--------------------CCTTCCHHHHHHHHHHHHHSCCCCT
T ss_pred             eccCCeEeeecccc----------CccCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence            99999999999941          12789999999999999999999998754


No 51 
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00  E-value=2.1e-37  Score=230.81  Aligned_cols=119  Identities=24%  Similarity=0.510  Sum_probs=110.5

Q ss_pred             chHHHHHHHHHHHHHHhhCC---CCCeEEEecCCCCceeEEEEEECC-CCCCCCC-----------cEEEEEEeCCCCCC
Q 031982            2 AASQASLLLQKQLKDLCKNP---VAGFSAGLVDETNIFEWSVTIIGP-PDTLYEG-----------GFFNAIMSFPSNYP   66 (149)
Q Consensus         2 ~~~~~~~RL~~El~~l~~~~---~~~~~~~~~~~~n~~~w~v~i~gp-~~t~y~g-----------g~f~~~i~fp~~YP   66 (149)
                      ++..+.+||++||++|++++   +.++.+.+. ++|+++|+++|.|| ++|||+|           |.|+++|.||++||
T Consensus        24 ~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~-~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP  102 (186)
T 1zuo_A           24 GSVQASDRLMKELRDIYRSQSYKTGIYSVELI-NDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFP  102 (186)
T ss_dssp             CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEE-TTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTT
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEc-CCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCC
Confidence            45678999999999999988   678999886 78999999999997 9999998           89999999999999


Q ss_pred             CCCCeeeEecccccC-ccCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCCC
Q 031982           67 NSPPTVKFTTEIWHP-NVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPND  133 (149)
Q Consensus        67 ~~pP~i~f~t~i~Hp-nv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~~p~~  133 (149)
                      ++||+|+|.|++||| ||+.+|+||+++|.            .++|+|+++|++||++|+++|.+|+.
T Consensus       103 ~~PP~V~f~tpi~hPnnV~~~G~ICL~iL~------------~~~WsP~~ti~~VL~sI~slL~~p~a  158 (186)
T 1zuo_A          103 FDPPFVRVVLPVLSGGYVLGGGALCMELLT------------KQGWSSAYSIESVIMQINATLVKGKA  158 (186)
T ss_dssp             SSCCEEEEEESCEESTTBCGGGBBCCGGGS------------TTTCCTTSCHHHHHHHHHHHHHHTTC
T ss_pred             CCCCeEEEeCCccCCCccCCCCcEEeccCC------------CCCCCCcCcHHHHHHHHHHHHcCCCh
Confidence            999999999999999 69999999999996            37899999999999999999998863


No 52 
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.94  E-value=1.6e-28  Score=177.56  Aligned_cols=100  Identities=15%  Similarity=0.261  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCc----------EEEEEEeCCCCCCCCCCeeeEe
Q 031982            6 ASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGG----------FFNAIMSFPSNYPNSPPTVKFT   75 (149)
Q Consensus         6 ~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg----------~f~~~i~fp~~YP~~pP~i~f~   75 (149)
                      ..+||++|++.|++      ++.+. ++|++.|.+++.||+||+|+||          .|.+++.||++||++||+|+|.
T Consensus        33 w~~RL~eE~k~L~k------~v~p~-k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~  105 (172)
T 2z6o_A           33 WVQRLKEEYQSLIR------YVENN-KNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVP  105 (172)
T ss_dssp             HHHHHHHHHHHHHH------HHHHH-HHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCG
T ss_pred             HHHHHHHHHHHHHH------HhccC-ccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeC
Confidence            48999999999988      24454 6799999999999999999999          9999999999999999999999


Q ss_pred             cc-cccCccCCCCcEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHH
Q 031982           76 TE-IWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIV  121 (149)
Q Consensus        76 t~-i~Hpnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il  121 (149)
                      +. ++||||+.+|+|||++|..     ..|    ..|+|+++|..+|
T Consensus       106 ~~~~~hpnmY~~G~ICLdIL~k-----p~W----s~~~P~~~IahiL  143 (172)
T 2z6o_A          106 ELDGKTAKMYRGGKICLTDHFK-----PLW----ARNVPKFGLAHLM  143 (172)
T ss_dssp             GGTTTCSSBCTTSBBCCCTTHH-----HHH----HHHTTSCCHHHHH
T ss_pred             CCCCCCCCCCCCCcEechhhcc-----ccc----cccCCccCHHHHH
Confidence            98 9999999999999999941     000    2455999999998


No 53 
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.83  E-value=1.6e-20  Score=136.42  Aligned_cols=114  Identities=20%  Similarity=0.274  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHhhCCC---CCeEEEecCCCCceeEEEEEECCCCCCCCCcE---EEEEEeCCCCCCCCCCeeeEec----
Q 031982            7 SLLLQKQLKDLCKNPV---AGFSAGLVDETNIFEWSVTIIGPPDTLYEGGF---FNAIMSFPSNYPNSPPTVKFTT----   76 (149)
Q Consensus         7 ~~RL~~El~~l~~~~~---~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~---f~~~i~fp~~YP~~pP~i~f~t----   76 (149)
                      .+|..+|+.++.+..+   +...+... ++...++.+.+.|.-..+|+|++   |.+.|.||++||++||.|.|.+    
T Consensus        30 ~~~~~~dv~~~l~~yp~L~p~t~~yt~-~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~  108 (162)
T 3r3q_A           30 GRTTFHDSLALLDNFHSLRPRTRVFTH-SDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFD  108 (162)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEEC-TTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCC
T ss_pred             hhHHHHHHHHHHHhCCCCceeeeeEEc-CCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCcc
Confidence            3577788888866432   22333343 56677788888887779999998   8899999999999999998865    


Q ss_pred             ---c---cc-cCccCCCCcEEeecCCCCCCCCCCCCCCCCCCCc-cCcHHHHHHHHHHhhcCCCCCC
Q 031982           77 ---E---IW-HPNVYPDGRVCISILHPPGDDPNGYELASERWMP-VHTVESIVLSIISMLSSPNDES  135 (149)
Q Consensus        77 ---~---i~-Hpnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p-~~~i~~il~~i~~~l~~p~~~~  135 (149)
                         +   |+ ||||+++|+||+++|              ++|+| +.++.++|..|+++|.+|+++.
T Consensus       109 m~~~~~~I~~hpnVD~~G~I~lpyL--------------~~W~p~~s~L~~ll~~l~~lf~ep~~d~  161 (162)
T 3r3q_A          109 MNTISSSLPIQEYIDSNGWIALPIL--------------HAWDPAAMNLIMVVQELMSLLHEPPQDQ  161 (162)
T ss_dssp             TTTSCTTSTHHHHBCTTSBBCCGGG--------------GSCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred             ccccccccCCCCCCCCCCcEeCccc--------------ccCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence               1   77 999999999999999              46999 6899999999999999999875


No 54 
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.77  E-value=2.1e-20  Score=132.55  Aligned_cols=83  Identities=18%  Similarity=0.340  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCc----------EEEEEEeCCCCCCCCCCeeeE
Q 031982            5 QASLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGG----------FFNAIMSFPSNYPNSPPTVKF   74 (149)
Q Consensus         5 ~~~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg----------~f~~~i~fp~~YP~~pP~i~f   74 (149)
                      ....||.+||+.|-+       ....++++-..|...+.||+||+|+|+          .|.+++.||.+||.+||+|+|
T Consensus        34 ~w~~RlkeEy~alI~-------yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~F  106 (168)
T 3kpa_A           34 KWTARLKEEYASLIT-------YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIAL  106 (168)
T ss_dssp             HHHHHHHHHHHHHHH-------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBC
T ss_pred             HHHHHHHHHHHHHHH-------HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeec
Confidence            357899999999943       222234566789999999999999999          999999999999999999999


Q ss_pred             ecc-cccCccCCCCcEEeecC
Q 031982           75 TTE-IWHPNVYPDGRVCISIL   94 (149)
Q Consensus        75 ~t~-i~Hpnv~~~G~iCl~~l   94 (149)
                      .+. .+|||++.+|+|||+++
T Consensus       107 p~ldgkt~kmYr~GkICLdIh  127 (168)
T 3kpa_A          107 PELEGKTVKMYRGGKICMTTH  127 (168)
T ss_dssp             GGGTTTCSSEETTTEECCCTT
T ss_pred             ccccCcCccccCCCcEEeccc
Confidence            995 89999999999999875


No 55 
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.49  E-value=5.1e-14  Score=100.54  Aligned_cols=103  Identities=17%  Similarity=0.310  Sum_probs=79.5

Q ss_pred             HHHHHHHHHhhCCCC---CeEEEecCCCCceeEEEEEECCCCCCCCCcEEEE--EEeCCCCCCCCCCeeeEecc------
Q 031982            9 LLQKQLKDLCKNPVA---GFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNA--IMSFPSNYPNSPPTVKFTTE------   77 (149)
Q Consensus         9 RL~~El~~l~~~~~~---~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~--~i~fp~~YP~~pP~i~f~t~------   77 (149)
                      +..+|+..+.++-+.   ......-...+++.|.++|.    .+|+|++|.+  .|-||++||++||.+ |.++      
T Consensus        24 ~t~~dv~~vl~~yp~L~p~~~~y~G~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I   98 (146)
T 3obq_A           24 LTVRETVNVITLYKDLKPVLDSYGTGSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTI   98 (146)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEESSSTTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEE
T ss_pred             hhHHHHHHHHHhCCCCceEeeeeeCChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEE
Confidence            345666666554322   12221122357899999996    5799999885  899999999999999 6555      


Q ss_pred             cccCccCCCCcEEeecCCCCCCCCCCCCCCCCCCCc-cCcHHHHHHHHHHhhcC
Q 031982           78 IWHPNVYPDGRVCISILHPPGDDPNGYELASERWMP-VHTVESIVLSIISMLSS  130 (149)
Q Consensus        78 i~Hpnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p-~~~i~~il~~i~~~l~~  130 (149)
                      ..|+||+.+|+||++.|.              +|++ ..++.+++..|+..|.+
T Consensus        99 ~~~~~Vd~~G~i~lpyL~--------------~W~~~~snL~~ll~~l~~~F~~  138 (146)
T 3obq_A           99 KTGKHVDANGKIYLPYLH--------------EWKHPQSDLLGLIQVMIVVFGD  138 (146)
T ss_dssp             CCBTTBCTTCBBCCHHHH--------------TCCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCEeccccc--------------ccCCCCCCHHHHHHHHHHHHhh
Confidence            489999999999999994              4988 88999999999999874


No 56 
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.76  E-value=0.01  Score=40.27  Aligned_cols=67  Identities=13%  Similarity=0.188  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEec
Q 031982            7 SLLLQKQLKDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTT   76 (149)
Q Consensus         7 ~~RL~~El~~l~~~~~~~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t   76 (149)
                      ..+...|+..|..-.+..+.+  . .+....+.+.+..-.+..-+.-.+.+.|.+|++||.+||.|.+.+
T Consensus        12 ~e~q~~EleaL~sIy~d~~~~--~-~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   78 (128)
T 2ebm_A           12 GEEQRNELEALESIYPDSFTV--L-SENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS   78 (128)
T ss_dssp             HHHHHHHHHHHHHHCSSSEEE--C-CSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred             HHHHHHHHHHHHHHccCceEE--c-cCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence            456678998887765555544  2 223456666665222222234478899999999999999998765


No 57 
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=95.85  E-value=0.067  Score=39.13  Aligned_cols=82  Identities=16%  Similarity=0.313  Sum_probs=59.9

Q ss_pred             HHHHHHHHHhhCCCCCeE-EEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecccccCccCCCC
Q 031982            9 LLQKQLKDLCKNPVAGFS-AGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDG   87 (149)
Q Consensus         9 RL~~El~~l~~~~~~~~~-~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~~G   87 (149)
                      +|.+|+.++      |+. +... +.++....+.+....     |....+.|.++.+||.++|.+...-+.  |      
T Consensus         5 ~li~Ei~~i------GW~~l~~i-d~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~DlP~--~------   64 (186)
T 3zqs_A            5 SLIEEIGTL------GWDKLVYA-DTCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFVDFPV--P------   64 (186)
T ss_dssp             SHHHHHHHH------CGGGEEEE-CTTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEECCCSS--C------
T ss_pred             HHHHHHHHh------CCceeeee-cCCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEEcCCC--C------
Confidence            678888888      432 2233 457888888887433     678999999999999999987654443  0      


Q ss_pred             cEEeecCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhc
Q 031982           88 RVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLS  129 (149)
Q Consensus        88 ~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~il~~i~~~l~  129 (149)
                            +             .-.|+|..++.+++.+.+..+.
T Consensus        65 ------~-------------~~~w~~~ssL~~v~~qF~~~Le   87 (186)
T 3zqs_A           65 ------F-------------CASWTPQSSLISIYSQFLAAIE   87 (186)
T ss_dssp             ------C-------------CCCCCTTCCHHHHHHHHHHHHH
T ss_pred             ------c-------------ccccCCCccHHHHHHHHHHHHH
Confidence                  0             1469999999999888777654


No 58 
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=95.77  E-value=0.11  Score=35.48  Aligned_cols=68  Identities=10%  Similarity=0.176  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEEecCC-------CCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEecc
Q 031982            7 SLLLQKQLKDLCKNPVAGFSAGLVDE-------TNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTE   77 (149)
Q Consensus         7 ~~RL~~El~~l~~~~~~~~~~~~~~~-------~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~   77 (149)
                      ..+-..|+..|..-.+..+.+  .+.       .....+.+.+....+ .-..-.+.+.|.+|++||..+|.|.+.+.
T Consensus        12 ~e~q~~EleaL~SIY~d~~~~--~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~~   86 (138)
T 2yz0_A           12 YEIQCNELEAIRSIYMDDFTD--LTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKNV   86 (138)
T ss_dssp             HHHHHHHHHHHHTTSSSSEEC--CSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEECC
T ss_pred             HHHHHHHHHHHHHHChhhhee--cccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEecC
Confidence            445677888887755444433  222       124567777763222 11234788999999999999999988653


No 59 
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=95.74  E-value=0.03  Score=37.97  Aligned_cols=69  Identities=14%  Similarity=0.202  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHhhCCCCCeEEEecCC--CCceeEEEEEECCCCCCC--CCcEEEEEEeCCCCCCCCCCeeeEecc
Q 031982            8 LLLQKQLKDLCKNPVAGFSAGLVDE--TNIFEWSVTIIGPPDTLY--EGGFFNAIMSFPSNYPNSPPTVKFTTE   77 (149)
Q Consensus         8 ~RL~~El~~l~~~~~~~~~~~~~~~--~n~~~w~v~i~gp~~t~y--~gg~f~~~i~fp~~YP~~pP~i~f~t~   77 (149)
                      .+...|+..|..-....+.+... .  .....+.+.+..+.+..-  ..-.+.+.|.+|++||..+|.|.+.+.
T Consensus        11 e~~~~EleaL~SIY~de~~~~~~-~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~   83 (128)
T 2day_A           11 WVLPSEVEVLESIYLDELQVIKG-NGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP   83 (128)
T ss_dssp             CHHHHHHHHHHHHSTTTEEEECC-TTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCceEEecC-CCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC
Confidence            45778888887766555654321 1  234556666652222111  124788999999999999999988764


No 60 
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.93  E-value=0.058  Score=36.54  Aligned_cols=67  Identities=15%  Similarity=0.184  Sum_probs=41.0

Q ss_pred             HHHHHHHHHhhCCCC--CeEEEecCCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeeEec
Q 031982            9 LLQKQLKDLCKNPVA--GFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTT   76 (149)
Q Consensus         9 RL~~El~~l~~~~~~--~~~~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t   76 (149)
                      +...|+..|..-...  .+.+.-....+...+.+.+.. .+..-..-.+.+.|.+|++||..+|.|.+.+
T Consensus        11 ~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~-~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~   79 (128)
T 2ebk_A           11 PVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKA-EGFMDADIPLELVFHLPVNYPSCLPGISINS   79 (128)
T ss_dssp             HHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEEC-CTTTTCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred             HHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecC-CCCCCCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence            456688777664332  343311111234677777763 2211112478999999999999999997653


No 61 
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=93.74  E-value=0.53  Score=31.91  Aligned_cols=67  Identities=15%  Similarity=0.156  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEEecCCC------CceeEEEEEECCCCC--CCCCcEEEEEEeCCCCCCCCCCeeeEec
Q 031982            7 SLLLQKQLKDLCKNPVAGFSAGLVDET------NIFEWSVTIIGPPDT--LYEGGFFNAIMSFPSNYPNSPPTVKFTT   76 (149)
Q Consensus         7 ~~RL~~El~~l~~~~~~~~~~~~~~~~------n~~~w~v~i~gp~~t--~y~gg~f~~~i~fp~~YP~~pP~i~f~t   76 (149)
                      ..+...|+..|..-....+..  .+.+      ....+.+.+. +.+.  .-..-.+.+.|.||++||..+|.|.+..
T Consensus        12 ~e~q~~EleaL~SIY~d~~~~--~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   86 (137)
T 1ukx_A           12 SQRQDHELQALEAIYGSDFQD--LRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKN   86 (137)
T ss_dssp             HHHHHHHHHHHHHHTSSSEEE--CCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEE
T ss_pred             HHHHHHHHHHHHHHCccccee--ccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEec
Confidence            345677888887755545543  2221      1345666665 2220  0012468999999999999999998854


No 62 
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=93.51  E-value=0.53  Score=32.94  Aligned_cols=25  Identities=12%  Similarity=0.151  Sum_probs=22.2

Q ss_pred             cEEEEEEeCCCCCCCCCCeeeEecc
Q 031982           53 GFFNAIMSFPSNYPNSPPTVKFTTE   77 (149)
Q Consensus        53 g~f~~~i~fp~~YP~~pP~i~f~t~   77 (149)
                      ..+.++|.+|.+||..+|.|...+.
T Consensus        75 ~~i~L~v~lP~~YP~~~P~i~l~~~   99 (154)
T 2daw_A           75 VKIDLQVTMPHSYPYLALQLFGRSS   99 (154)
T ss_dssp             EEEEEEEEECSSTTSSCCEEEEECS
T ss_pred             ceEEEEEEcCCCCCCCCCcEEEEeC
Confidence            3899999999999999999987764


No 63 
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=89.95  E-value=0.22  Score=34.70  Aligned_cols=25  Identities=20%  Similarity=0.466  Sum_probs=22.0

Q ss_pred             cEEEEEEeCCCCCCCCCCeeeEecc
Q 031982           53 GFFNAIMSFPSNYPNSPPTVKFTTE   77 (149)
Q Consensus        53 g~f~~~i~fp~~YP~~pP~i~f~t~   77 (149)
                      -.+.+.|.+|.+||..||.|.+...
T Consensus        73 ~~l~L~v~lP~~YP~~~P~i~l~~~   97 (152)
T 2dax_A           73 AMFSLACILPFKYPAVLPEITVRSV   97 (152)
T ss_dssp             EEEEEEEEECSSTTSSCCCCEEECT
T ss_pred             ceEEEEEECCCCCCCCCCeEEEEcc
Confidence            3688999999999999999987764


No 64 
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=57.21  E-value=10  Score=17.90  Aligned_cols=21  Identities=24%  Similarity=0.256  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHhhCCCCCe
Q 031982            5 QASLLLQKQLKDLCKNPVAGF   25 (149)
Q Consensus         5 ~~~~RL~~El~~l~~~~~~~~   25 (149)
                      +-..||.-|+...+.+++.|.
T Consensus         5 seldrlllelnavqhnppsg~   25 (26)
T 3u3c_B            5 SELDRLLLELNAVQHNPPSGX   25 (26)
T ss_pred             HHHHHHHHHHhhhccCCCCCC
Confidence            346799999999999988774


No 65 
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=32.60  E-value=23  Score=22.33  Aligned_cols=12  Identities=25%  Similarity=0.329  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHH
Q 031982            6 ASLLLQKQLKDL   17 (149)
Q Consensus         6 ~~~RL~~El~~l   17 (149)
                      -+|||++|||-|
T Consensus        63 QLKRvQRdlrGL   74 (87)
T 2rf4_B           63 QLKRIQRDFKGL   74 (87)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHhhcCC
Confidence            569999999987


No 66 
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=25.38  E-value=1.8e+02  Score=20.57  Aligned_cols=35  Identities=17%  Similarity=0.399  Sum_probs=26.4

Q ss_pred             CCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCC
Q 031982           33 TNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPN   67 (149)
Q Consensus        33 ~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~   67 (149)
                      +.-.+|.|.+.|+.+.-...-+=++.+.|.++||.
T Consensus        30 ~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~n   64 (175)
T 3rls_A           30 EHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN   64 (175)
T ss_dssp             TCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSS
T ss_pred             CCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCC
Confidence            35679999999887643334566788899999974


No 67 
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=25.37  E-value=25  Score=16.55  Aligned_cols=17  Identities=29%  Similarity=0.604  Sum_probs=9.4

Q ss_pred             CCCCCeeeEecccccCc
Q 031982           66 PNSPPTVKFTTEIWHPN   82 (149)
Q Consensus        66 P~~pP~i~f~t~i~Hpn   82 (149)
                      |...|.-.|..+-|||-
T Consensus         4 pmtlpenyfserpyhpp   20 (26)
T 2jrw_A            4 PMTLPENYFSERPYHPP   20 (26)
T ss_dssp             CCCCSSSSCCSSSCCSC
T ss_pred             ccccchhhcccCCCCCC
Confidence            34445555666666653


No 68 
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=24.68  E-value=48  Score=15.52  Aligned_cols=13  Identities=23%  Similarity=0.194  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHh
Q 031982            6 ASLLLQKQLKDLC   18 (149)
Q Consensus         6 ~~~RL~~El~~l~   18 (149)
                      -++.|.+|+++-+
T Consensus         9 lqkkirkelkqrq   21 (26)
T 1m46_B            9 LQKKIRKELKQRQ   21 (26)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            4678888888643


No 69 
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=23.55  E-value=70  Score=16.99  Aligned_cols=15  Identities=7%  Similarity=0.147  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHh
Q 031982            4 SQASLLLQKQLKDLC   18 (149)
Q Consensus         4 ~~~~~RL~~El~~l~   18 (149)
                      .+..+||..|++.+.
T Consensus        27 v~~~~~~~~~~~~~~   41 (42)
T 3g9r_A           27 KSKIKRIENEIKRIK   41 (42)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc
Confidence            356799999999875


No 70 
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=21.45  E-value=87  Score=22.77  Aligned_cols=26  Identities=19%  Similarity=0.409  Sum_probs=21.6

Q ss_pred             CCcEEEEEEeCCCCCCC-----CCCeeeEec
Q 031982           51 EGGFFNAIMSFPSNYPN-----SPPTVKFTT   76 (149)
Q Consensus        51 ~gg~f~~~i~fp~~YP~-----~pP~i~f~t   76 (149)
                      +.|.|.|.-.+|--||.     .||.|.|.-
T Consensus       109 ~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~V  139 (209)
T 2bum_A          109 GTGFWSFNTIKPGAVPGRKGSTQAPHISLII  139 (209)
T ss_dssp             TTCCEEEEEECCCCCBCSTTCBCCCCEEEEE
T ss_pred             CCcEEEEEEEccCcccCCCCCccCcEEEEEE
Confidence            45899999999999998     788887653


Done!