BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031983
(149 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4P8D2|MIA40_USTMA Mitochondrial intermembrane space import and assembly protein 40
OS=Ustilago maydis (strain 521 / FGSC 9021) GN=MIA40
PE=3 SV=1
Length = 247
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 58 ECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDILE 117
+CPC+ + GPCG QF AF CF+ S +E KG DCV F A+Q+C + +P + KD +E
Sbjct: 148 DCPCLGGMAHGPCGEQFKLAFSCFVYSEAEPKGIDCVDKFKAMQDCFREHPDVY-KDEIE 206
Query: 118 EDEVKN 123
+DE N
Sbjct: 207 DDEAAN 212
>sp|Q7S3S2|MIA40_NEUCR Mitochondrial intermembrane space import and assembly protein 40
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=mia-40 PE=3 SV=1
Length = 298
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 23 DSSQRAASIESLIAEAAAYGDDENESLD-------EKAQKALECPCIADLRSGPCGAQFS 75
DS R+ S E +I EA A + E D E + +CPC+ + GPCG +F
Sbjct: 148 DSKPRSESTEGVIPEAGASPEALQEEADAQGAFNPETGEINWDCPCLGGMAHGPCGEEFK 207
Query: 76 EAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDILEE 118
AF CF+ ST E KG DC+ F +Q+C + P + ++ ++
Sbjct: 208 AAFSCFVYSTEEPKGMDCIEKFSHMQDCFRKYPEVYGAELADD 250
>sp|Q6BSK8|MIA40_DEBHA Mitochondrial intermembrane space import and assembly protein 40
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=MIA40 PE=3 SV=1
Length = 249
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 43/63 (68%)
Query: 58 ECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDILE 117
+CPC+ + GPCG +F EAF CF+ S SE KG +C+ F +++NC + +P + +++ +
Sbjct: 145 DCPCLGGMAHGPCGEEFKEAFACFIYSESEPKGIECIKKFESMRNCFREHPEHYKEELYD 204
Query: 118 EDE 120
++E
Sbjct: 205 DEE 207
>sp|P0CM69|MIA40_CRYNB Mitochondrial intermembrane space import and assembly protein 40
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=MIA40 PE=3 SV=1
Length = 242
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 12/133 (9%)
Query: 10 DQTEGEQSSP---SSPDSSQRAASIESLIAE---AAAYGDDENESLDEKAQKALECPCIA 63
D+ GE + P +S DS ++AA + I E A A + E + +CPC+
Sbjct: 89 DEFSGESTKPEASTSSDSVEKAADDAAQILEEKEAEASEPSQGAYNPETGEINWDCPCLG 148
Query: 64 DLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSK------DILE 117
+ +GPCG QF AF CF+ S +E KG DCV F +Q+C + +P + + ++
Sbjct: 149 GMATGPCGEQFKAAFSCFVYSEAEPKGVDCVELFKVMQDCFREHPEIYGEVDTLGLVLMF 208
Query: 118 EDEVKNEEEPPPE 130
E+ ++E PP E
Sbjct: 209 YAEIDDDEAPPQE 221
>sp|Q757A5|MIA40_ASHGO Mitochondrial intermembrane space import and assembly protein 40
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=MIA40 PE=3 SV=1
Length = 266
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 58 ECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDILE 117
+CPC+ + GPCG +F AF CF+ S +E KG DCV F +Q+C + +P +++ +
Sbjct: 186 DCPCLGGMAHGPCGEEFKAAFACFVYSEAEPKGIDCVEKFQVMQDCFRQHPEHYAEQLES 245
Query: 118 EDEVKNEEEPPPE 130
E++ E E E
Sbjct: 246 EEQAVRETEAAAE 258
>sp|Q6CSA1|MIA40_KLULA Mitochondrial intermembrane space import and assembly protein 40
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=MIA40
PE=3 SV=1
Length = 406
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 58 ECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDILE 117
+CPC+ + GPCG +F AF CF+ S ++ KG +CV F +QNC + P +++ I +
Sbjct: 281 DCPCLGGMAYGPCGEEFKSAFSCFVYSEADPKGINCVEKFSTMQNCFRKYPDYYAEQIKD 340
Query: 118 EDEVKNE 124
E+E E
Sbjct: 341 EEEASAE 347
>sp|P36046|MIA40_YEAST Mitochondrial intermembrane space import and assembly protein 40
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=MIA40 PE=1 SV=2
Length = 403
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 58 ECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDILE 117
+CPC+ + GPCG +F AF CF+ S +E KG DCV F +Q+C + P +++ +
Sbjct: 295 DCPCLGGMAHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYPEHYAEQLK- 353
Query: 118 EDEVKNEEEPPPEYKI 133
E ++EEP + K+
Sbjct: 354 --ETSDDEEPQDKVKV 367
>sp|P0C1D2|MIA40_EMENI Mitochondrial intermembrane space import and assembly protein 40
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=mia40 PE=3 SV=1
Length = 283
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 58 ECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDI 115
+CPC+ + GPCG +F AF CF+ S E KG DC+ F A+Q+C +A+P + ++
Sbjct: 151 DCPCLGGMAYGPCGEEFRAAFSCFVYSEEEPKGMDCIDKFKAMQDCFRAHPDVYGAEL 208
>sp|Q8N4Q1|MIA40_HUMAN Mitochondrial intermembrane space import and assembly protein 40
OS=Homo sapiens GN=CHCHD4 PE=1 SV=1
Length = 142
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 34/53 (64%)
Query: 59 CPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAF 111
CPC+ + SGPCG QF AF CF ST E KGSDCV F A+Q C++ P +
Sbjct: 53 CPCLGGMASGPCGEQFKSAFSCFHYSTEEIKGSDCVDQFRAMQECMQKYPDLY 105
>sp|Q8VEA4|MIA40_MOUSE Mitochondrial intermembrane space import and assembly protein 40
OS=Mus musculus GN=Chchd4 PE=1 SV=1
Length = 139
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 59 CPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKD 114
CPC+ + SGPCG QF AF CF ST + KGSDC+ F A+Q C++ P + +D
Sbjct: 53 CPCLGGMASGPCGEQFKSAFSCFHYSTEDIKGSDCIDQFRAMQECMQKYPDLYPQD 108
>sp|Q5BJN5|MIA40_RAT Mitochondrial intermembrane space import and assembly protein 40
OS=Rattus norvegicus GN=Chchd4 PE=2 SV=1
Length = 139
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 59 CPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKD 114
CPC+ + SGPCG QF AF CF ST + KGSDC+ F A+Q C++ P + +D
Sbjct: 53 CPCLGGMASGPCGEQFKSAFSCFHYSTEDIKGSDCIDQFRAMQECMQKYPDLYPQD 108
>sp|P0CM68|MIA40_CRYNJ Mitochondrial intermembrane space import and assembly protein 40
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=MIA40 PE=3 SV=1
Length = 242
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 10 DQTEGEQSSP---SSPDSSQRAASIESLIAE---AAAYGDDENESLDEKAQKALECPCIA 63
D+ GE + P +S DS ++AA + I E A A + E + +CPC+
Sbjct: 89 DEFSGESTKPEASTSSDSVEKAADDAAQILEEKEAEASEPSQGAYNPETGEINWDCPCLG 148
Query: 64 DLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAF 111
+ +GPCG QF AF CF+ S +E KG DCV F +Q+C + +P +
Sbjct: 149 GMATGPCGEQFKAAFSCFVYSEAEPKGVDCVELFKVMQDCFREHPEIY 196
>sp|O94030|MIA40_CANAL Mitochondrial intermembrane space import and assembly protein 40
OS=Candida albicans (strain SC5314 / ATCC MYA-2876)
GN=MIA40 PE=3 SV=2
Length = 252
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 58 ECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDILE 117
+CPC+ + GPCG +F EAF CF+ S +E KG DC+ F +++C K P + ++ +
Sbjct: 151 DCPCLGGMAHGPCGEEFKEAFSCFVFSETEPKGIDCIKKFENMRSCFKRYPEHYKDELYD 210
Query: 118 EDE 120
+ E
Sbjct: 211 DGE 213
>sp|Q4IK03|MIA40_GIBZE Mitochondrial intermembrane space import and assembly protein 40
OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC
9075 / NRRL 31084) GN=MIA40 PE=3 SV=2
Length = 368
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 13 EGEQSSPSSPDSSQRAASIESLIAEAAAYGDDENESLDEKAQKALECPCIADLRSGPCGA 72
E +QS+P + + A++E + A+ E + +CPC+ + GPCG
Sbjct: 113 ESQQSNPQTAAADGSPAALEEEAGQQGAFNP-------ETGEINWDCPCLGGMADGPCGE 165
Query: 73 QFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDILEEDE 120
+F AF CF+ S E KG DC+ F +Q C K P + ++ ++++
Sbjct: 166 EFKTAFSCFVFSQEEPKGMDCIDKFQGMQECFKKYPDIYGAELADDED 213
>sp|Q4WGL2|MIA40_ASPFU Mitochondrial intermembrane space import and assembly protein 40
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=mia40 PE=3 SV=1
Length = 297
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 58 ECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAF 111
+CPC+ + GPCG +F AF CF+ ST E KG DC+ F +Q C + P +
Sbjct: 151 DCPCLGGMAHGPCGEEFKAAFSCFVYSTEEPKGMDCIDKFKGMQECFRRYPDVY 204
>sp|Q6FW26|MIA40_CANGA Mitochondrial intermembrane space import and assembly protein 40
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=MIA40 PE=3 SV=1
Length = 404
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 58 ECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDI 115
+CPC+ + GPCG +F AF CF+ S +E KG DCV F +Q+C + P +++ +
Sbjct: 290 DCPCLGGMAHGPCGEEFKAAFSCFVYSEAEPKGIDCVEKFQHMQDCFRRYPEHYAEQL 347
>sp|P87059|MIA40_SCHPO Mitochondrial intermembrane space import and assembly protein 40
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mia40 PE=3 SV=1
Length = 313
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 58 ECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDILE 117
+CPC+ + GPCG +F AF CF+ S SE KG +C+ F A+Q C + +P +
Sbjct: 198 DCPCLGGMAHGPCGEEFKAAFSCFVYSKSEPKGMECLDKFQAMQACFQKHPEIY------ 251
Query: 118 EDEVKNEEEPPPEYKIIPPVWSKEPRTPKS 147
+D V EE E P S E P+S
Sbjct: 252 QDMVGESEEEDAETNEKPSTTSDENNQPQS 281
>sp|Q6DEI8|MIA40_DANRE Mitochondrial intermembrane space import and assembly protein 40
OS=Danio rerio GN=chchd4 PE=2 SV=1
Length = 146
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%)
Query: 59 CPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAF 111
CPC+ + SGPCG QF +AF CF S E KGSDCV F +Q C++ P +
Sbjct: 53 CPCLGGMASGPCGQQFKDAFSCFHYSKEEIKGSDCVENFRGMQECMQKYPELY 105
>sp|Q63ZK1|MI40B_XENLA Mitochondrial intermembrane space import and assembly protein 40-B
OS=Xenopus laevis GN=chchd4-b PE=2 SV=1
Length = 139
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%)
Query: 59 CPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAF 111
CPC+ + SGPCG QF AF CF S E KGSDC+ F A+Q C++ P +
Sbjct: 53 CPCLGGMASGPCGEQFKSAFSCFHYSQEEIKGSDCLDQFRAMQECMQKYPELY 105
>sp|Q6PBC3|MIA40_XENTR Mitochondrial intermembrane space import and assembly protein 40
OS=Xenopus tropicalis GN=chchd4 PE=2 SV=1
Length = 139
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%)
Query: 59 CPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAF 111
CPC+ + SGPCG QF AF CF S E KGSDC+ F A+Q C++ P +
Sbjct: 53 CPCLGGMASGPCGEQFKSAFSCFHYSQEEIKGSDCLDQFRAMQECMQKYPDIY 105
>sp|Q2KHZ4|MIA40_BOVIN Mitochondrial intermembrane space import and assembly protein 40
OS=Bos taurus GN=CHCHD4 PE=2 SV=1
Length = 137
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%)
Query: 59 CPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAF 111
CPC+ + SGPCG QF AF CF S + KGSDCV F A+Q C++ P +
Sbjct: 53 CPCLGGMASGPCGEQFKAAFSCFHYSKEDVKGSDCVDQFRAMQECMQKYPDLY 105
>sp|Q6NU12|MI40A_XENLA Mitochondrial intermembrane space import and assembly protein 40-A
OS=Xenopus laevis GN=chchd4-a PE=2 SV=1
Length = 139
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%)
Query: 59 CPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAF 111
CPC+ + SGPCG QF AF CF S E KGSDC+ F +Q C++ P +
Sbjct: 53 CPCLGGMASGPCGEQFKSAFSCFHYSQEEIKGSDCLDQFRGMQECMQKYPDLY 105
>sp|Q2USJ2|MIA40_ASPOR Mitochondrial intermembrane space import and assembly protein 40
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=mia40 PE=3 SV=1
Length = 187
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 51 EKAQKALECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPF 97
E + +CPC+ + GPCG +F AF CF+ S E KG DC+ F
Sbjct: 138 ETGEINWDCPCLGGMAHGPCGEEFKAAFSCFVYSEEEPKGMDCIEKF 184
>sp|P34415|YLZ2_CAEEL Uncharacterized protein F42H10.2 OS=Caenorhabditis elegans
GN=F42H10.2 PE=4 SV=1
Length = 115
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 53 AQKALECPCIADLRSGPCGAQFSEAFLC 80
Q EC C+ L PCG +F EA C
Sbjct: 49 GQINFECHCVGHLVGSPCGFEFREAITC 76
>sp|P28311|DEFA4_MOUSE Alpha-defensin 4 OS=Mus musculus GN=Defa4 PE=1 SV=4
Length = 92
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 14/78 (17%)
Query: 3 QVQSEAIDQTEGEQSSPSSPDSSQRAASIESLIAEAAAYGDDENESLDEKAQKALECPC- 61
QVQ++ I T+ E + P +A SI ++G E +L EK+ + L C C
Sbjct: 16 QVQADPIQNTDEETKTEEQPGEEDQAVSI--------SFGGQEGSALHEKSLRGLLCYCR 67
Query: 62 -----IADLRSGPCGAQF 74
+ G CG +F
Sbjct: 68 KGHCKRGERVRGTCGIRF 85
>sp|Q55BN0|MED23_DICDI Putative mediator of RNA polymerase II transcription subunit 23
OS=Dictyostelium discoideum GN=med23 PE=3 SV=1
Length = 1662
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 98 VALQNCIKANPSAFSKDILE--EDEVKNE 124
V ++NC K+NP FSK LE D +KNE
Sbjct: 864 VFIENCFKSNPYCFSKSTLEFFPDILKNE 892
>sp|Q45VN2|DFA20_MOUSE Alpha-defensin 20 OS=Mus musculus GN=Defa20 PE=2 SV=1
Length = 92
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 12/68 (17%)
Query: 3 QVQSEAIDQTEGEQSSPSSPDSSQRAASIESLIAEAAAYGDDENESLDEKAQKALECPCI 62
QVQ++ I T+ E ++ P +A S+ ++GD E +L EK+ + L C C
Sbjct: 16 QVQADPIQNTDEETNTEEQPGEEDQAVSV--------SFGDPEGSALHEKSSRDLICYC- 66
Query: 63 ADLRSGPC 70
R G C
Sbjct: 67 ---RKGGC 71
>sp|P17012|ZFX_MOUSE Zinc finger X-chromosomal protein OS=Mus musculus GN=Zfx PE=1 SV=2
Length = 799
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 45 ENESLDEKAQKALECPCIADLRSGPCGAQFSEAFLCFL-KSTSEEKGSDCVH 95
E+ L KA+KA+EC CG FS A F K +EKG++ +H
Sbjct: 470 ESHKLTSKAEKAIECD--------ECGKHFSHAGALFTHKMVHKEKGANKMH 513
>sp|O62836|ZFX_BOVIN Zinc finger X-chromosomal protein OS=Bos taurus GN=ZFX PE=2 SV=2
Length = 800
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 45 ENESLDEKAQKALECPCIADLRSGPCGAQFSEAFLCFL-KSTSEEKGSDCVH 95
E+ L KA+KA+EC CG FS A F K +EKG++ +H
Sbjct: 471 ESHKLTSKAEKAIEC--------DECGKHFSHAGALFTHKMVHKEKGANKMH 514
>sp|P17010|ZFX_HUMAN Zinc finger X-chromosomal protein OS=Homo sapiens GN=ZFX PE=2 SV=2
Length = 805
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 45 ENESLDEKAQKALECPCIADLRSGPCGAQFSEAFLCFL-KSTSEEKGSDCVH 95
E+ L KA+KA+EC CG FS A F K +EKG++ +H
Sbjct: 476 ESHKLTSKAEKAIECD--------ECGKHFSHAGALFTHKMVHKEKGANKMH 519
>sp|Q6B4Z5|ZFY_PANTR Zinc finger Y-chromosomal protein OS=Pan troglodytes GN=ZFY PE=2
SV=1
Length = 801
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 45 ENESLDEKAQKALECPCIADLRSGPCGAQFSEAFLCFL-KSTSEEKGSDCVH 95
E+ L KA+KA+EC CG FS A F K +EKG++ +H
Sbjct: 472 ESHKLTSKAEKAIEC--------DECGKHFSHAGALFTHKMVHKEKGANKMH 515
>sp|P08048|ZFY_HUMAN Zinc finger Y-chromosomal protein OS=Homo sapiens GN=ZFY PE=1 SV=3
Length = 801
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 45 ENESLDEKAQKALECPCIADLRSGPCGAQFSEAFLCFL-KSTSEEKGSDCVH 95
E+ L KA+KA+EC CG FS A F K +EKG++ +H
Sbjct: 472 ESHKLTSKAEKAIEC--------DECGKHFSHAGALFTHKMVHKEKGANKMH 515
>sp|Q52V16|ZFY_GORGO Zinc finger Y-chromosomal protein OS=Gorilla gorilla gorilla GN=ZFY
PE=3 SV=1
Length = 801
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 45 ENESLDEKAQKALECPCIADLRSGPCGAQFSEAFLCFL-KSTSEEKGSDCVH 95
E+ L KA+KA+EC CG FS A F K +EKG++ +H
Sbjct: 472 ESHKLTSKAEKAIEC--------DECGKHFSHAGALFTHKMVHKEKGANKMH 515
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.126 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,401,298
Number of Sequences: 539616
Number of extensions: 2216913
Number of successful extensions: 6339
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 6298
Number of HSP's gapped (non-prelim): 86
length of query: 149
length of database: 191,569,459
effective HSP length: 107
effective length of query: 42
effective length of database: 133,830,547
effective search space: 5620882974
effective search space used: 5620882974
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)