Query 031983
Match_columns 149
No_of_seqs 124 out of 149
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 12:45:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031983.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031983hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k3j_A Mitochondrial intermemb 100.0 1.4E-35 4.8E-40 232.0 2.0 67 54-120 52-118 (146)
2 2zxt_A Maltose-binding peripla 100.0 1.5E-32 5.1E-37 229.8 3.5 67 54-120 391-457 (465)
3 1fiz_L Beta-acrosin light chai 42.6 4.3 0.00015 23.6 -0.3 10 67-76 7-16 (26)
4 2lql_A Coiled-coil-helix-coile 40.1 18 0.00061 26.3 2.6 20 92-111 60-79 (113)
5 1fiw_L Beta-acrosin light chai 39.4 5.2 0.00018 23.3 -0.3 10 67-76 6-15 (26)
6 2lql_A Coiled-coil-helix-coile 36.2 20 0.00068 26.0 2.3 36 69-106 60-95 (113)
7 1u96_A Cytochrome C oxidase co 33.5 21 0.00073 24.7 1.9 37 70-108 26-62 (69)
8 2lqt_A Coiled-coil-helix-coile 23.2 68 0.0023 22.9 3.1 42 68-111 14-55 (85)
9 3zxw_B Ribulose bisphosphate c 23.0 37 0.0013 25.3 1.8 21 95-115 68-88 (118)
10 1ei0_A P8MTCP1; helix-turn-hel 22.9 89 0.003 18.7 3.2 37 69-107 2-38 (38)
11 1rbl_M Ribulose 1,5 bisphospha 21.1 47 0.0016 24.3 2.0 23 91-113 65-87 (109)
12 3s2k_C Dickkopf-related protei 20.0 23 0.0008 25.6 0.1 13 54-66 58-70 (97)
No 1
>2k3j_A Mitochondrial intermembrane space import and assembly protein 40; alpha-hairpin fold, coiled coil-helix-coiled coil-helix domain; NMR {Homo sapiens} PDB: 2l0y_A
Probab=100.00 E-value=1.4e-35 Score=231.98 Aligned_cols=67 Identities=45% Similarity=0.938 Sum_probs=57.4
Q ss_pred hhhcCCCcccCCCCCCchHHHHhhhhcccccCCCcCCCCChHhHHHHHHHHHhCccchhhhhhhhhh
Q 031983 54 QKALECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDILEEDE 120 (149)
Q Consensus 54 ~iNwdCPCLggMa~GPCG~eFkeAFSCF~~S~eE~KGsDC~e~F~amq~Cm~~~Pd~y~~el~e~ee 120 (149)
+|||+|||||||++||||++||+||+||+||++++||+||+++|++||+||++||++|++++.++++
T Consensus 52 eINwdCPClggma~GPCG~eFreAfsCF~~S~~e~Kg~dC~e~F~~mq~Cm~~~P~~y~~~~~~~~~ 118 (146)
T 2k3j_A 52 NINWNCPCLGGMASGPCGEQFKSAFSCFHYSTEEIKGSDCVDQFRAMQECMQKYPDLYPQEDEDEEE 118 (146)
T ss_dssp SBCTTSHHHHHHTSSSTHHHHHHHHHHHHHHCCSSTTTTTHHHHHHHHHHHHHCSSCC---------
T ss_pred ceeecCCcccccCCCCcHHHHHHHHHhhccCccccccchHHHHHHHHHHHHHHChHhhccccccccc
Confidence 4999999999999999999999999999999999999999999999999999999999998877665
No 2
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli}
Probab=99.97 E-value=1.5e-32 Score=229.76 Aligned_cols=67 Identities=36% Similarity=0.926 Sum_probs=62.1
Q ss_pred hhhcCCCcccCCCCCCchHHHHhhhhcccccCCCcCCCCChHhHHHHHHHHHhCccchhhhhhhhhh
Q 031983 54 QKALECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDILEEDE 120 (149)
Q Consensus 54 ~iNwdCPCLggMa~GPCG~eFkeAFSCF~~S~eE~KGsDC~e~F~amq~Cm~~~Pd~y~~el~e~ee 120 (149)
+|||+||||++|++||||++||+||+||+||++++||+||+++|++||+||++||++|+++|.++++
T Consensus 391 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 457 (465)
T 2zxt_A 391 EINWDCPCLGGMAHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYPEHYAEQLKETSD 457 (465)
T ss_dssp EECTTCGGGTTTTSSTTHHHHHHHHHHHHHCCSSSTTGGGHHHHHHHHHHHTTCTTTCCCCCC----
T ss_pred eeeecCCccccCCCCCchHHHHHHHHhhhcCccccccchHHHHHHHHHHHHHHCHHHHHHhhhhhhh
Confidence 5999999999999999999999999999999999999999999999999999999999999987665
No 3
>1fiz_L Beta-acrosin light chain; anti-parallel beta-barrel, hydrolase; HET: NDG FUL BMA PBZ; 2.90A {Sus scrofa} SCOP: b.47.1.2
Probab=42.61 E-value=4.3 Score=23.64 Aligned_cols=10 Identities=50% Similarity=1.384 Sum_probs=8.6
Q ss_pred CCCchHHHHh
Q 031983 67 SGPCGAQFSE 76 (149)
Q Consensus 67 ~GPCG~eFke 76 (149)
+||||--||.
T Consensus 7 dgpCGlrfrq 16 (26)
T 1fiz_L 7 DGPCGLRFRQ 16 (26)
T ss_pred cccccceecc
Confidence 5899999985
No 4
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=40.06 E-value=18 Score=26.29 Aligned_cols=20 Identities=35% Similarity=0.931 Sum_probs=11.6
Q ss_pred CChHhHHHHHHHHHhCccch
Q 031983 92 DCVHPFVALQNCIKANPSAF 111 (149)
Q Consensus 92 DC~e~F~amq~Cm~~~Pd~y 111 (149)
.|.++|.+...||++|..-|
T Consensus 60 ~C~~ef~~y~~CL~~n~~~~ 79 (113)
T 2lql_A 60 ACAQPFEAFEECLRQNEAAV 79 (113)
T ss_dssp HTHHHHHHHHHHHHHCTTCT
T ss_pred HhHHHHHHHHHHHHHccccH
Confidence 56666666666666665444
No 5
>1fiw_L Beta-acrosin light chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2
Probab=39.45 E-value=5.2 Score=23.30 Aligned_cols=10 Identities=50% Similarity=1.428 Sum_probs=8.6
Q ss_pred CCCchHHHHh
Q 031983 67 SGPCGAQFSE 76 (149)
Q Consensus 67 ~GPCG~eFke 76 (149)
+||||--||.
T Consensus 6 dgpCGlrfrq 15 (26)
T 1fiw_L 6 DGPCGVRFRQ 15 (26)
T ss_pred ccccCceecc
Confidence 5899999986
No 6
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=36.19 E-value=20 Score=26.04 Aligned_cols=36 Identities=14% Similarity=0.447 Sum_probs=31.3
Q ss_pred CchHHHHhhhhcccccCCCcCCCCChHhHHHHHHHHHh
Q 031983 69 PCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKA 106 (149)
Q Consensus 69 PCG~eFkeAFSCF~~S~eE~KGsDC~e~F~amq~Cm~~ 106 (149)
-|+.+|+.=..|--++..+. ..|.+....|..|..+
T Consensus 60 ~C~~ef~~y~~CL~~n~~~~--~~Cr~~~~~f~~Cae~ 95 (113)
T 2lql_A 60 ACAQPFEAFEECLRQNEAAV--GNCAEHMRRFLQCAEQ 95 (113)
T ss_dssp HTHHHHHHHHHHHHHCTTCT--TTCCSHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHccccH--HHHHHHHHHHHHHHHH
Confidence 69999999999987777654 6899999999999954
No 7
>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone, unstructured N-terminus, two alpha- helices; NMR {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A 1z2g_A
Probab=33.46 E-value=21 Score=24.71 Aligned_cols=37 Identities=19% Similarity=0.420 Sum_probs=27.2
Q ss_pred chHHHHhhhhcccccCCCcCCCCChHhHHHHHHHHHhCc
Q 031983 70 CGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANP 108 (149)
Q Consensus 70 CG~eFkeAFSCF~~S~eE~KGsDC~e~F~amq~Cm~~~P 108 (149)
|-++=+.==-|++.+.++.. +|.+...+...||+.|-
T Consensus 26 CpetK~aRDeCil~~gee~~--~C~~lIeahk~CMr~~G 62 (69)
T 1u96_A 26 CKPEKEERDTCILFNGQDSE--KCKEFIEKYKECMKGYG 62 (69)
T ss_dssp SSHHHHHHHHHHHHSCSCSG--GGHHHHHHHHHHHHTTT
T ss_pred CcchhhHHHHHHHhcCCcHH--HHHHHHHHHHHHHHHcC
Confidence 44444444468888877653 89999999999999863
No 8
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=23.23 E-value=68 Score=22.86 Aligned_cols=42 Identities=19% Similarity=0.407 Sum_probs=33.8
Q ss_pred CCchHHHHhhhhcccccCCCcCCCCChHhHHHHHHHHHhCccch
Q 031983 68 GPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAF 111 (149)
Q Consensus 68 GPCG~eFkeAFSCF~~S~eE~KGsDC~e~F~amq~Cm~~~Pd~y 111 (149)
-||-++-...+-|.....-+ -+.|..-|.+-.+|-+.-=.+.
T Consensus 14 nPC~~e~~~S~kCL~~n~yD--r~~C~~yF~~Yk~CKk~W~~v~ 55 (85)
T 2lqt_A 14 NPCLSESDASTRCLDENNYD--RERCSTYFLRYKNCRRFWNSIV 55 (85)
T ss_dssp CCCHHHHHHHHHHHHHTTTC--TTTTHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHcCcc--HHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999998666653 5799999999999976554433
No 9
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=23.02 E-value=37 Score=25.25 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=16.9
Q ss_pred HhHHHHHHHHHhCccchhhhh
Q 031983 95 HPFVALQNCIKANPSAFSKDI 115 (149)
Q Consensus 95 e~F~amq~Cm~~~Pd~y~~el 115 (149)
.-+..+++|.+.||+.|-.-+
T Consensus 68 ~Vl~Ele~C~k~~p~~yVRli 88 (118)
T 3zxw_B 68 DVLNEVQQCRSEYPNCFIRVV 88 (118)
T ss_dssp HHHHHHHHHHHHCTTSEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEEE
Confidence 467888899999999996533
No 10
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=22.87 E-value=89 Score=18.67 Aligned_cols=37 Identities=24% Similarity=0.460 Sum_probs=22.6
Q ss_pred CchHHHHhhhhcccccCCCcCCCCChHhHHHHHHHHHhC
Q 031983 69 PCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKAN 107 (149)
Q Consensus 69 PCG~eFkeAFSCF~~S~eE~KGsDC~e~F~amq~Cm~~~ 107 (149)
||..+-+.-..|.....- .-+.|-.-|.+|++|=++|
T Consensus 2 pC~~~a~a~q~CL~~n~~--d~skCq~~id~l~~Cc~~~ 38 (38)
T 1ei0_A 2 PCQKQAAEIQKCLQANSY--LESKCQAVIQELKKCAAQY 38 (38)
T ss_dssp CSHHHHHHHHHHHHHTTT--CGGGTHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHHHhcC
Confidence 677766665667544332 2356777777777775543
No 11
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=21.10 E-value=47 Score=24.32 Aligned_cols=23 Identities=4% Similarity=0.177 Sum_probs=19.0
Q ss_pred CCChHhHHHHHHHHHhCccchhh
Q 031983 91 SDCVHPFVALQNCIKANPSAFSK 113 (149)
Q Consensus 91 sDC~e~F~amq~Cm~~~Pd~y~~ 113 (149)
.|-..-...+++|.+.||+.|-.
T Consensus 65 ~d~~~Vl~Ele~C~k~~p~~yVR 87 (109)
T 1rbl_M 65 AAPQQVLDEVRECRSEYGDCYIR 87 (109)
T ss_dssp CCHHHHHHHHHHHHHHCTTSEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCeEE
Confidence 35567788999999999999854
No 12
>3s2k_C Dickkopf-related protein 1; WNT CO-receptor, beta-propeller, EGF domain, WNT signaling, inhibitor, glycosylation, signaling protein; HET: NAG FUC; 2.80A {Homo sapiens} PDB: 3s8v_X
Probab=20.01 E-value=23 Score=25.61 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=11.2
Q ss_pred hhhcCCCcccCCC
Q 031983 54 QKALECPCIADLR 66 (149)
Q Consensus 54 ~iNwdCPCLggMa 66 (149)
+|.|-|||..||.
T Consensus 58 ~~~~rCPC~~GL~ 70 (97)
T 3s2k_C 58 EIFQRCYCGEGLS 70 (97)
T ss_dssp CSBCCCCBCTTEE
T ss_pred ccceeCCCCCCCe
Confidence 5889999999975
Done!