Query 031983
Match_columns 149
No_of_seqs 124 out of 149
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 12:45:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031983.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031983hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pu9a1 g.36.1.1 (A:8-115) Fer 24.9 11 0.00083 26.1 1.1 10 53-62 61-70 (108)
2 d1svdm1 d.73.1.1 (M:3-110) Rib 23.5 17 0.0012 25.0 1.7 20 94-113 68-87 (108)
3 d1rbli_ d.73.1.1 (I:) Ribulose 23.5 17 0.0012 24.9 1.8 19 95-113 69-87 (109)
4 d1ppjh_ f.28.1.1 (H:) Non-heme 21.4 29 0.0021 21.7 2.5 17 90-106 39-55 (66)
5 d1u97a_ a.17.1.2 (A:) Cytochro 19.4 25 0.0018 22.7 1.8 36 70-107 26-61 (69)
6 d1co4a_ g.47.1.1 (A:) Zinc dom 19.1 7.1 0.00052 23.4 -0.9 16 55-70 7-23 (42)
7 d1bxni_ d.73.1.1 (I:) Ribulose 18.8 24 0.0017 24.8 1.8 22 94-115 62-83 (129)
8 d1bwvs_ d.73.1.1 (S:) Ribulose 17.4 27 0.002 25.0 1.8 21 95-115 63-83 (138)
9 d1wdds_ d.73.1.1 (S:) Ribulose 16.4 30 0.0022 24.2 1.8 19 95-113 81-99 (122)
10 d2hf5a1 a.39.1.5 (A:81-113) Tr 14.4 24 0.0017 19.4 0.7 13 72-84 3-15 (33)
No 1
>d2pu9a1 g.36.1.1 (A:8-115) Ferredoxin thioredoxin reductase (FTR), catalytic beta chain {Synechocystis sp. [TaxId: 1143]}
Probab=24.87 E-value=11 Score=26.07 Aligned_cols=10 Identities=30% Similarity=1.066 Sum_probs=7.7
Q ss_pred HhhhcCCCcc
Q 031983 53 AQKALECPCI 62 (149)
Q Consensus 53 ~~iNwdCPCL 62 (149)
...+|.|||+
T Consensus 61 k~~~~iCPC~ 70 (108)
T d2pu9a1 61 KNTFWNCPCV 70 (108)
T ss_dssp HHCTTBSSCH
T ss_pred hcCceecCCc
Confidence 3456999997
No 2
>d1svdm1 d.73.1.1 (M:3-110) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Halothiobacillus neapolitanus [TaxId: 927]}
Probab=23.47 E-value=17 Score=25.00 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=16.8
Q ss_pred hHhHHHHHHHHHhCccchhh
Q 031983 94 VHPFVALQNCIKANPSAFSK 113 (149)
Q Consensus 94 ~e~F~amq~Cm~~~Pd~y~~ 113 (149)
..-+..++.|.+.||+.|-.
T Consensus 68 ~~Vl~Ele~c~~~~p~~YVR 87 (108)
T d1svdm1 68 DNVLAEIEACRSAYPTHQVK 87 (108)
T ss_dssp HHHHHHHHHHHHHSTTSEEE
T ss_pred HHHHHHHHHHHHHCCCCEEE
Confidence 46678899999999999864
No 3
>d1rbli_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Synechococcus sp., strain pcc 6301 [TaxId: 1131]}
Probab=23.46 E-value=17 Score=24.95 Aligned_cols=19 Identities=5% Similarity=0.280 Sum_probs=16.1
Q ss_pred HhHHHHHHHHHhCccchhh
Q 031983 95 HPFVALQNCIKANPSAFSK 113 (149)
Q Consensus 95 e~F~amq~Cm~~~Pd~y~~ 113 (149)
.-+..++.|.+.||+.|-.
T Consensus 69 ~Vl~ele~c~~~~p~~YVR 87 (109)
T d1rbli_ 69 QVLDEVRECRSEYGDCYIR 87 (109)
T ss_dssp HHHHHHHHHHHHCTTSEEE
T ss_pred HHHHHHHHHHHhCCcCEEE
Confidence 4677889999999999864
No 4
>d1ppjh_ f.28.1.1 (H:) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=21.37 E-value=29 Score=21.74 Aligned_cols=17 Identities=12% Similarity=0.362 Sum_probs=14.2
Q ss_pred CCCChHhHHHHHHHHHh
Q 031983 90 GSDCVHPFVALQNCIKA 106 (149)
Q Consensus 90 GsDC~e~F~amq~Cm~~ 106 (149)
..+|+++|-.|.-|.-.
T Consensus 39 ~E~C~eE~fd~~hc~D~ 55 (66)
T d1ppjh_ 39 EEDCTEELLDFLHARDH 55 (66)
T ss_dssp SCCSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 34999999999998753
No 5
>d1u97a_ a.17.1.2 (A:) Cytochrome C oxidase copper chaperone, COX17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.38 E-value=25 Score=22.75 Aligned_cols=36 Identities=19% Similarity=0.439 Sum_probs=25.9
Q ss_pred chHHHHhhhhcccccCCCcCCCCChHhHHHHHHHHHhC
Q 031983 70 CGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKAN 107 (149)
Q Consensus 70 CG~eFkeAFSCF~~S~eE~KGsDC~e~F~amq~Cm~~~ 107 (149)
|-++=+.==-|++.+.++ ...|.+...+...||+.|
T Consensus 26 CpetK~aRDeCil~~ge~--~~~C~~lIeahk~CMr~~ 61 (69)
T d1u97a_ 26 CKPEKEERDTCILFNGQD--SEKCKEFIEKYKECMKGY 61 (69)
T ss_dssp CHHHHHHHHHHHHHTCTT--STTSHHHHHHHHHHHHHH
T ss_pred CchhhhHhhHHHHhcCCc--HHHHHHHHHHHHHHHHHc
Confidence 444444444688887664 246999999999999975
No 6
>d1co4a_ g.47.1.1 (A:) Zinc domain conserved in yeast copper-regulated transcription factors {Synthetic}
Probab=19.15 E-value=7.1 Score=23.37 Aligned_cols=16 Identities=25% Similarity=0.814 Sum_probs=13.2
Q ss_pred hhcCC-CcccCCCCCCc
Q 031983 55 KALEC-PCIADLRSGPC 70 (149)
Q Consensus 55 iNwdC-PCLggMa~GPC 70 (149)
..|.| +|+.|-+.+-|
T Consensus 7 ~KyAC~~CIRGHRsS~C 23 (42)
T d1co4a_ 7 VKYACDSCIKSHKAAQC 23 (42)
T ss_dssp EEEEETTTTTTSGGGGC
T ss_pred eeEeHhhhhCccccccc
Confidence 57999 99999887665
No 7
>d1bxni_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Alcaligenes eutrophus [TaxId: 106590]}
Probab=18.75 E-value=24 Score=24.85 Aligned_cols=22 Identities=9% Similarity=0.208 Sum_probs=17.7
Q ss_pred hHhHHHHHHHHHhCccchhhhh
Q 031983 94 VHPFVALQNCIKANPSAFSKDI 115 (149)
Q Consensus 94 ~e~F~amq~Cm~~~Pd~y~~el 115 (149)
..-+..++.|.++||+.|-.-+
T Consensus 62 ~~Vl~ele~c~~e~p~~YVRli 83 (129)
T d1bxni_ 62 AGILMEINNARNTFPNHYIRVT 83 (129)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEE
T ss_pred HHHHHHHHHHHHHCCcCEEEEE
Confidence 4667788999999999996533
No 8
>d1bwvs_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Probab=17.37 E-value=27 Score=24.96 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=16.7
Q ss_pred HhHHHHHHHHHhCccchhhhh
Q 031983 95 HPFVALQNCIKANPSAFSKDI 115 (149)
Q Consensus 95 e~F~amq~Cm~~~Pd~y~~el 115 (149)
.-+..+++|.+.||+.|-.-+
T Consensus 63 ~Vl~Ele~C~k~~p~~YVRli 83 (138)
T d1bwvs_ 63 AVLFEINACRKARSNFYIKVV 83 (138)
T ss_dssp HHHHHHHHHHHHCTTSEEEEE
T ss_pred HHHHHHHHHHHHCCcceEEEE
Confidence 457788899999999996433
No 9
>d1wdds_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=16.37 E-value=30 Score=24.18 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=15.9
Q ss_pred HhHHHHHHHHHhCccchhh
Q 031983 95 HPFVALQNCIKANPSAFSK 113 (149)
Q Consensus 95 e~F~amq~Cm~~~Pd~y~~ 113 (149)
.-+..+++|.+.||+.|-.
T Consensus 81 ~Vl~Ele~C~k~~p~~YVR 99 (122)
T d1wdds_ 81 QVLKELEEAKKAYPDAFVR 99 (122)
T ss_dssp HHHHHHHHHHHHCTTSEEE
T ss_pred HHHHHHHHHHHHCCCceEE
Confidence 4577889999999999864
No 10
>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=14.39 E-value=24 Score=19.37 Aligned_cols=13 Identities=38% Similarity=0.514 Sum_probs=9.9
Q ss_pred HHHHhhhhccccc
Q 031983 72 AQFSEAFLCFLKS 84 (149)
Q Consensus 72 ~eFkeAFSCF~~S 84 (149)
+++|+||.-|=..
T Consensus 3 eel~eAF~~FDkD 15 (33)
T d2hf5a1 3 EEIREAFRVFDKD 15 (33)
T ss_dssp HHHHHHHHHHSSS
T ss_pred HHHHHHHHHhCCC
Confidence 5799999988443
Done!