BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031985
(149 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UT82|RT06_SCHPO 37S ribosomal protein MRP17, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mrp17 PE=3 SV=2
Length = 111
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 20 MELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQLMQMTMMSTPNINKEL 79
M + G+ + GV+ D+ S G +L IKKL+ Y G MT S P + E+
Sbjct: 26 MNIAKNCGRAILDNKGVVVDVESMGLKELAKPIKKLNQSYSFGHWWSMTFYSNPTVQSEI 85
Query: 80 Q-YLNKEDRLLRWLLVK 95
Q L E +LR+++VK
Sbjct: 86 QRILRLEPSVLRYMIVK 102
>sp|Q8R6M1|RS6_THETN 30S ribosomal protein S6 OS=Thermoanaerobacter tengcongensis
(strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
GN=rpsF PE=3 SV=1
Length = 95
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ M +L P + +E L+ R + R G +T+ +G +L Y I+K YY
Sbjct: 1 MRSYETMYVLSPDLNEEERKGLIERFKNLIVERGGEITNFDEWGKRKLAYPIQKKSEGYY 60
Query: 61 QGQLMQMTMMSTPNINKELQYLNK-EDRLLRWLLVK 95
+ M S+P++++EL+ + + D +LR+L+++
Sbjct: 61 ----VLMNFNSSPDVSRELERVYRITDGVLRYLIIR 92
>sp|C5D9X6|RS6_GEOSW 30S ribosomal protein S6 OS=Geobacillus sp. (strain WCH70)
GN=rpsF PE=3 SV=1
Length = 95
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ M +++P++ E+ +V R + +T++T +G +L Y IKK Y
Sbjct: 1 MRKYEIMYIIRPNLDDEARQAVVDRFNNILKENGAEITNVTDWGKRRLAYEIKK----YR 56
Query: 61 QGQLMQMTMMSTPNINKELQYLNK-EDRLLRWLLVK 95
G M + ++S P +E L + D ++R ++VK
Sbjct: 57 DGHYMILNVVSEPKAVQEFDRLARISDDIIRHIVVK 92
>sp|B1I6T1|RS6_DESAP 30S ribosomal protein S6 OS=Desulforudis audaxviator (strain
MP104C) GN=rpsF PE=3 SV=1
Length = 94
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ M +LKP + E +L+ + K + R+G +T++ +G +L Y IK Y
Sbjct: 1 MRQYEVMYILKPDLEDEESTQLIEKFSKIITDRDGEITELNRWGKRRLAYEIKD----YR 56
Query: 61 QGQLMQMTMMSTPNINKELQYLNK-EDRLLRWLLVK 95
+G + M + +EL + + D LLR ++++
Sbjct: 57 EGHYVVMKCRAEHAAAQELDRVFRITDGLLRHMIIR 92
>sp|Q5KU69|RS6_GEOKA 30S ribosomal protein S6 OS=Geobacillus kaustophilus (strain
HTA426) GN=rpsF PE=3 SV=1
Length = 95
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGV-LTDITSFGTVQLGYGIKKLDGRY 59
M Y+ M +++P++ E+ LV R +V NG +T++T +G +L Y I+K Y
Sbjct: 1 MRKYEIMYIIRPNMDDEARQALVERFN-NVLKENGAEITNVTDWGKRRLAYEIQK----Y 55
Query: 60 YQGQLMQMTMMSTPNINKELQYLNK-EDRLLRWLLVK 95
G M + ++S P +E L + + ++R ++VK
Sbjct: 56 RDGYYMIVNVVSEPKAVQEFDRLARISEDIIRHIVVK 92
>sp|B9KCI6|RS6_CAMLR 30S ribosomal protein S6 OS=Campylobacter lari (strain RM2100 / D67
/ ATCC BAA-1060) GN=rpsF PE=3 SV=1
Length = 124
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 27/128 (21%)
Query: 4 YDCMLLLKPHVRKESL---MELVARVGKHVYGRNGV-LTDITSFGTVQLGYGIKKLDGRY 59
Y+ + +LKP + +E + +E V K V +NG + + GT +L Y IKK Y
Sbjct: 4 YEVLFILKPTLTEEEVSAKLEFV----KEVLTKNGAEIESVVPMGTRKLAYKIKK----Y 55
Query: 60 YQGQLMQMTMMSTPNINKELQ-YLNKEDRLLRWLLVKH-------------RGMK-NGKE 104
+G + + N+ EL+ L + ++R+L+VK+ +G+K N KE
Sbjct: 56 ERGTYFVIYFKAPTNLIAELERVLRITEEVIRFLIVKYENKKEIAAWEKLSKGIKQNKKE 115
Query: 105 ARYAETSE 112
+ +E++E
Sbjct: 116 IKASESTE 123
>sp|B2GEV4|RS6_LACF3 30S ribosomal protein S6 OS=Lactobacillus fermentum (strain NBRC
3956 / LMG 18251) GN=rpsF PE=3 SV=1
Length = 97
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQG- 62
Y+ +++P + + + ELVAR K + + D + T + Y I G+Y +G
Sbjct: 6 YEITYIIRPDIEESAKSELVARFDKILADNGATVVDSADWDTRRFAYQI----GKYTEGT 61
Query: 63 -QLMQMTMMSTPNINKELQYLNKEDRLLRWLLVK 95
++ +T S ++N+ + D +LR ++VK
Sbjct: 62 YHIVNVTADSDASLNEFDRLAKFSDDILRHMIVK 95
>sp|B9M5U8|RS6_GEOSF 30S ribosomal protein S6 OS=Geobacter sp. (strain FRC-32) GN=rpsF
PE=3 SV=1
Length = 128
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLD-GRY 59
M +Y+ + +++P + +E L + ARV + + G L + +G +L Y I+K + GRY
Sbjct: 1 MRMYETIFIVQPDLGEEELKGISARVQEVIVSMKGELKRLEDWGARKLAYPIEKFNRGRY 60
Query: 60 Y 60
Y
Sbjct: 61 Y 61
>sp|A1W057|RS6_CAMJJ 30S ribosomal protein S6 OS=Campylobacter jejuni subsp. jejuni
serotype O:23/36 (strain 81-176) GN=rpsF PE=3 SV=1
Length = 125
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 4 YDCMLLLKPHVRKESL---MELVARVGKHVYGRNGV-LTDITSFGTVQLGYGIKKLDGRY 59
Y+ + +LKP + +E + +E V K V +NG + + GT +L Y IKK Y
Sbjct: 4 YEVLFILKPTLTEEEVNAKLEFV----KEVLTKNGAEIETVVPMGTRKLAYKIKK----Y 55
Query: 60 YQGQLMQMTMMSTPNINKELQ-YLNKEDRLLRWLLVKHRGMK 100
+G + + N+ EL+ L + ++R+L+VK+ K
Sbjct: 56 ERGTYFVIYFKAPTNLIAELERVLRITEEVIRFLIVKYENKK 97
>sp|A7H2T4|RS6_CAMJD 30S ribosomal protein S6 OS=Campylobacter jejuni subsp. doylei
(strain ATCC BAA-1458 / RM4099 / 269.97) GN=rpsF PE=3
SV=1
Length = 125
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 4 YDCMLLLKPHVRKESL---MELVARVGKHVYGRNGV-LTDITSFGTVQLGYGIKKLDGRY 59
Y+ + +LKP + +E + +E V K V +NG + + GT +L Y IKK Y
Sbjct: 4 YEVLFILKPTLTEEEVNAKLEFV----KEVLTKNGAEIETVVPMGTRKLAYKIKK----Y 55
Query: 60 YQGQLMQMTMMSTPNINKELQ-YLNKEDRLLRWLLVKHRGMK 100
+G + + N+ EL+ L + ++R+L+VK+ K
Sbjct: 56 ERGTYFVIYFKAPTNLIAELERVLRITEEVIRFLIVKYENKK 97
>sp|A8FMC3|RS6_CAMJ8 30S ribosomal protein S6 OS=Campylobacter jejuni subsp. jejuni
serotype O:6 (strain 81116 / NCTC 11828) GN=rpsF PE=3
SV=1
Length = 125
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 4 YDCMLLLKPHVRKESL---MELVARVGKHVYGRNGV-LTDITSFGTVQLGYGIKKLDGRY 59
Y+ + +LKP + +E + +E V K V +NG + + GT +L Y IKK Y
Sbjct: 4 YEVLFILKPTLTEEEVNAKLEFV----KEVLTKNGAEIETVVPMGTRKLAYKIKK----Y 55
Query: 60 YQGQLMQMTMMSTPNINKELQ-YLNKEDRLLRWLLVKHRGMK 100
+G + + N+ EL+ L + ++R+L+VK+ K
Sbjct: 56 ERGTYFVIYFKAPTNLIAELERVLRITEEVIRFLIVKYENKK 97
>sp|A7HKU7|RS6_FERNB 30S ribosomal protein S6 OS=Fervidobacterium nodosum (strain ATCC
35602 / DSM 5306 / Rt17-B1) GN=rpsF PE=3 SV=1
Length = 124
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGR-NGVLTDITSFGTVQLGYGIKKLDGRY 59
M +Y+ M ++KP V +E +LV V K + R + + +G +L Y I G+Y
Sbjct: 1 MRIYETMFIIKPDVSEEERNKLVENVKKFLEERVKAQVETVDRWGIRKLAYKI----GKY 56
Query: 60 YQGQLMQMTMMSTPNINKELQ-YLNKEDRLLRWLLVKHRGMKNGKEARYA 108
++G M S +L+ Y +RW + ++ KE R A
Sbjct: 57 FEGDYTVMYFRSNGQGLDQLENYFKVHPEFMRWQTFRREDLEK-KERRAA 105
>sp|Q0SPR6|RS6_CLOPS 30S ribosomal protein S6 OS=Clostridium perfringens (strain SM101
/ Type A) GN=rpsF PE=3 SV=1
Length = 95
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ + + P + +E++ L+ + + NG + ++ +G +L Y I K++ YY
Sbjct: 1 MRKYETIFVAHPSLDEEAVKALIEKFKGVIENGNGTVDNVDFWGKRKLAYEIAKVNEGYY 60
Query: 61 QGQLMQMTMMSTPNINKEL-QYLNKEDRLLRWLLVK 95
L+ T + P + KEL + D ++R ++VK
Sbjct: 61 --TLINFT--ANPELPKELDRVFGITDGIIRHIIVK 92
>sp|Q8XH43|RS6_CLOPE 30S ribosomal protein S6 OS=Clostridium perfringens (strain 13 /
Type A) GN=rpsF PE=3 SV=2
Length = 95
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ + + P + +E++ L+ + + NG + ++ +G +L Y I K++ YY
Sbjct: 1 MRKYETIFVAHPSLDEEAVKALIEKFKGVIENGNGTVDNVDFWGKRKLAYEIAKVNEGYY 60
Query: 61 QGQLMQMTMMSTPNINKEL-QYLNKEDRLLRWLLVK 95
L+ T + P + KEL + D ++R ++VK
Sbjct: 61 --TLINFT--ANPELPKELDRVFGITDGIIRHIIVK 92
>sp|Q0TM08|RS6_CLOP1 30S ribosomal protein S6 OS=Clostridium perfringens (strain ATCC
13124 / NCTC 8237 / Type A) GN=rpsF PE=3 SV=1
Length = 95
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ + + P + +E++ L+ + + NG + ++ +G +L Y I K++ YY
Sbjct: 1 MRKYETIFVAHPSLDEEAVKALIEKFKGVIENGNGTVDNVDFWGKRKLAYEIAKVNEGYY 60
Query: 61 QGQLMQMTMMSTPNINKEL-QYLNKEDRLLRWLLVK 95
L+ T + P + KEL + D ++R ++VK
Sbjct: 61 --TLINFT--ANPELPKELDRVFGITDGIIRHIIVK 92
>sp|A5FYN8|RS6_ACICJ 30S ribosomal protein S6 OS=Acidiphilium cryptum (strain JF-5)
GN=rpsF PE=3 SV=1
Length = 158
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 65/154 (42%), Gaps = 9/154 (5%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MPLY+C+L+ + + ++ + + V V +G + +G L Y IKK
Sbjct: 1 MPLYECVLIARSEITQQQVDTIADAVTAQVESESGAVKKREYWGLRNLAYRIKK----NR 56
Query: 61 QGQLMQMTMMSTPNINKELQ-YLNKEDRLLRWLLVKHRGMKNGKEARYAETSEADLKKY- 118
+G + + + + P E++ L + +LR++ V+ + A A E +
Sbjct: 57 KGHYVLLGLDAEPATISEMERQLGLNEDVLRFMTVRVEDIDEAPSAPLARRGEDRDRDRG 116
Query: 119 --GPSAIYDFE-GIEEEDNDEEEYDSEDAERKEH 149
GP F+ G +D EEY + D R +
Sbjct: 117 FRGPKPAGRFDSGRRRGADDREEYRARDEYRSDR 150
>sp|A5N440|RS6_CLOK5 30S ribosomal protein S6 OS=Clostridium kluyveri (strain ATCC
8527 / DSM 555 / NCIMB 10680) GN=rpsF PE=3 SV=1
Length = 95
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ + +L P + +E V + + GV+ ++ +G +L Y IKK++ YY
Sbjct: 1 MGKYETIFILHPSLDEEGYKANVEKFKGVIENGGGVIENVDIWGKRKLAYEIKKVNEGYY 60
Query: 61 QGQLMQMTMMSTPNINKEL-QYLNKEDRLLRWLLVK 95
+T + P + KEL + D ++R ++VK
Sbjct: 61 T----LITFNADPTLPKELDRVFRITDTVVRHIIVK 92
>sp|B9DXR0|RS6_CLOK1 30S ribosomal protein S6 OS=Clostridium kluyveri (strain NBRC
12016) GN=rpsF PE=3 SV=1
Length = 95
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ + +L P + +E V + + GV+ ++ +G +L Y IKK++ YY
Sbjct: 1 MGKYETIFILHPSLDEEGYKANVEKFKGVIENGGGVIENVDIWGKRKLAYEIKKVNEGYY 60
Query: 61 QGQLMQMTMMSTPNINKEL-QYLNKEDRLLRWLLVK 95
+T + P + KEL + D ++R ++VK
Sbjct: 61 T----LITFNADPTLPKELDRVFRITDTVVRHIIVK 92
>sp|B0K5L9|RS6_THEPX 30S ribosomal protein S6 OS=Thermoanaerobacter sp. (strain X514)
GN=rpsF PE=3 SV=1
Length = 95
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ M +L P + +E L+ R + G +T+ +G +L Y I K YY
Sbjct: 1 MRSYETMYILSPDLSEEERKGLIERFKNLIIENGGEITNFDEWGKRKLAYLIDKKPEGYY 60
Query: 61 QGQLMQMTMMSTPNINKELQYLNK-EDRLLRWLLVK 95
+ M S +++EL+ + K D +LR+L+++
Sbjct: 61 ----VLMNFNSDSKVSQELERVYKITDGVLRYLIIR 92
>sp|B0K8G4|RS6_THEP3 30S ribosomal protein S6 OS=Thermoanaerobacter pseudethanolicus
(strain ATCC 33223 / 39E) GN=rpsF PE=3 SV=1
Length = 95
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ M +L P + +E L+ R + G +T+ +G +L Y I K YY
Sbjct: 1 MRSYETMYILSPDLSEEERKGLIERFKNLIIENGGEITNFDEWGKRKLAYLIDKKPEGYY 60
Query: 61 QGQLMQMTMMSTPNINKELQYLNK-EDRLLRWLLVK 95
+ M S +++EL+ + K D +LR+L+++
Sbjct: 61 ----VLMNFNSDSKVSQELERVYKITDGVLRYLIIR 92
>sp|B4SB42|RS6_PELPB 30S ribosomal protein S6 OS=Pelodictyon phaeoclathratiforme
(strain DSM 5477 / BU-1) GN=rpsF PE=3 SV=1
Length = 134
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQG 62
LY+C L++ ++ E++ +A V + + + G ++ + G + Y IKK YY
Sbjct: 6 LYECTLIIDGGLQDEAIAAAMALVQRVITEKGGSISSVLEIGRRKTAYPIKKKTIGYYAH 65
Query: 63 QLMQMTMMSTPNINKELQYLNKEDRLLRWLLV 94
+ K ++Y E+ LLR+L++
Sbjct: 66 IEFTAATSVIAEVEKVIRY---EEDLLRYLII 94
>sp|Q3ANR5|RS6_CHLCH 30S ribosomal protein S6 OS=Chlorobium chlorochromatii (strain
CaD3) GN=rpsF PE=3 SV=1
Length = 132
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQG 62
LY+C ++ ++ E++ +A V + + + G + + G + Y IKK YY
Sbjct: 6 LYECTAIIDGGLQDEAVAATLAMVQRVITEKGGTINSVLDLGRRKTAYPIKKKSMGYYVH 65
Query: 63 QLMQMTMMSTPNINKELQYLNKEDRLLRWLLVK 95
I + L+Y E+ LLR+L+++
Sbjct: 66 IEFNAAAPVIAEIERVLRY---EEELLRYLIIQ 95
>sp|Q8KAM1|RS6_CHLTE 30S ribosomal protein S6 OS=Chlorobium tepidum (strain ATCC 49652
/ DSM 12025 / TLS) GN=rpsF PE=3 SV=1
Length = 131
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQ 63
Y+C +++ ++ +++ ++ V K V + GV+ ++ G ++ Y I+K YY
Sbjct: 7 YECTVIIDGGLQDDAIAAVMELVKKTVTDKGGVINNVLEVGRRKMAYLIRKTSIGYYA-- 64
Query: 64 LMQMTMMSTPNINKELQYLNK-EDRLLRWLLVK 95
+ + P++ E++ + + E+ +LR+L+++
Sbjct: 65 --HIEFDAVPSVIAEIERVFRYEEAILRFLIIQ 95
>sp|Q74FE4|RS6_GEOSL 30S ribosomal protein S6 OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=rpsF PE=3 SV=1
Length = 117
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKK-LDGRYYQ 61
+Y+ +++++P + + L L A+V + GVL + +G +L Y +KK + GRYY
Sbjct: 4 MYETIVIVQPELGDDELKGLTAKVTDIIGSFKGVLHRLEDWGVRKLAYPVKKSVRGRYYY 63
Query: 62 GQLMQMTMMSTPNINKELQYLNKEDRLLRWLLVK 95
+ P I + + L +D++LR+ VK
Sbjct: 64 VRFDG----DAPLIAELERRLRLDDKVLRYQSVK 93
>sp|A7GVN7|RS6_BACCN 30S ribosomal protein S6 OS=Bacillus cereus subsp. cytotoxis
(strain NVH 391-98) GN=rpsF PE=3 SV=1
Length = 95
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ M +++P++ +E+ LV R + + + +G +L Y I L +Y
Sbjct: 1 MKKYEIMYIIRPNMEEEAQKALVERFANVLTNNGAEIINTKEWGKRRLAYEINDLRDGFY 60
Query: 61 QGQLMQMTMMSTPNINKELQYLNK-EDRLLRWLLVK 95
M + + S P KE L K + ++R ++VK
Sbjct: 61 ----MILNVNSNPEAVKEFDRLAKINEDIIRHIVVK 92
>sp|Q17Z31|RS6_HELAH 30S ribosomal protein S6 OS=Helicobacter acinonychis (strain
Sheeba) GN=rpsF PE=3 SV=1
Length = 142
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ M +LKP + +E + + + + NGV+ G L Y IKK YY
Sbjct: 1 MRHYETMFILKPTLVEEEIKSKIEFYKEVITKHNGVIETSLDMGMRNLAYEIKKHKRGYY 60
Query: 61 QGQLMQMTMMSTPNINKELQYLNK-EDRLLRWLLVKHRGMKNGKEARYAETSEADLK 116
M + P++ EL+ L + + +LR++++K+ K EA +A A+ K
Sbjct: 61 ----YVMYFKAEPSMILELERLYRINEDVLRFIVIKYDSKKEV-EAWHALVDRANKK 112
>sp|A7GXQ4|RS6_CAMC5 30S ribosomal protein S6 OS=Campylobacter curvus (strain 525.92)
GN=rpsF PE=3 SV=1
Length = 142
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQ 63
Y+ + +LKP + +E + V V + + G + + GT +L Y IKK Y +G
Sbjct: 4 YELLFILKPTLTEEEVKAKVDFVKEVITKNGGEIATVVEMGTRKLAYTIKK----YERGT 59
Query: 64 LMQMTMMSTPNINKEL-QYLNKEDRLLRWLLVKH 96
+ + P + EL + + + ++R+L VK+
Sbjct: 60 YFVIYYKAPPTLLAELTRNIRITEDIIRFLSVKY 93
>sp|B5E552|VATA_STRP4 V-type ATP synthase alpha chain OS=Streptococcus pneumoniae
serotype 19F (strain G54) GN=atpA PE=3 SV=1
Length = 591
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 31 YGRNGVLTDITS--FGTVQLGYGIKKLDGRYYQGQLMQ 66
YG +G + I S F ++ Y IKKLDG +Y+G LMQ
Sbjct: 153 YGVSGXVVSIASGDFTIDEVVYEIKKLDGSFYKGTLMQ 190
>sp|Q5HU34|RS6_CAMJR 30S ribosomal protein S6 OS=Campylobacter jejuni (strain RM1221)
GN=rpsF PE=3 SV=1
Length = 125
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 4 YDCMLLLKPHVRKESL---MELVARVGKHVYGRNGV-LTDITSFGTVQLGYGIKKLDGRY 59
Y+ + +LKP + +E + +E V K V +N + + GT +L Y IKK Y
Sbjct: 4 YEVLFILKPTLTEEEVNAKLEFV----KEVLTKNSAEIETVVPMGTRKLAYKIKK----Y 55
Query: 60 YQGQLMQMTMMSTPNINKELQ-YLNKEDRLLRWLLVKHRGMK 100
+G + + N+ EL+ L + ++R+L+VK+ K
Sbjct: 56 ERGTYFVIYFKAPTNLIAELERVLRITEEVIRFLIVKYENKK 97
>sp|Q9ZAH3|RS6_CAMJE 30S ribosomal protein S6 OS=Campylobacter jejuni subsp. jejuni
serotype O:2 (strain NCTC 11168) GN=rpsF PE=3 SV=2
Length = 125
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 4 YDCMLLLKPHVRKESL---MELVARVGKHVYGRNGV-LTDITSFGTVQLGYGIKKLDGRY 59
Y+ + +LKP + +E + +E V K V +N + + GT +L Y IKK Y
Sbjct: 4 YEVLFILKPTLTEEEVNTKLEFV----KEVLTKNSAEIETVVPMGTRKLAYKIKK----Y 55
Query: 60 YQGQLMQMTMMSTPNINKELQ-YLNKEDRLLRWLLVKHRGMK 100
+G + + N+ EL+ L + ++R+L+VK+ K
Sbjct: 56 ERGTYFVIYFKAPTNLIAELERVLRITEEVIRFLIVKYENKK 97
>sp|Q2KZ18|RS6_BORA1 30S ribosomal protein S6 OS=Bordetella avium (strain 197N) GN=rpsF
PE=3 SV=1
Length = 124
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQ 63
Y+ + ++ P + E + +V R V G+NG + + +G QL Y I+KL +Y
Sbjct: 4 YEVVFIVHPD-QSEQVPAMVERYQSLVTGQNGAVHRLEDWGRRQLAYPIQKLVKAHYVCM 62
Query: 64 LMQMTMMSTPNINKELQYLNKEDRLLRWLLVKHRGMKNG 102
++ + + +Y D +LR L++K + G
Sbjct: 63 NIECNQATLDELEHSFRY---NDAVLRHLVIKTKKAPVG 98
>sp|Q9JZ29|RS6_NEIMB 30S ribosomal protein S6 OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rpsF PE=3 SV=1
Length = 122
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQ 63
Y+ + ++ P + E + +V R + NG + + +G QL Y I K+ +Y
Sbjct: 4 YEIVFIVHPD-QSEQVPAMVERYKTMIAEANGKIHRLEDWGRRQLAYPINKIHKAHY--- 59
Query: 64 LMQMTMMSTPNINKELQYLNK-EDRLLRWLLVK 95
+ M + +TP + +EL+ + D +LR L +K
Sbjct: 60 -VLMNIETTPEVVEELETAFRFNDAILRHLTIK 91
>sp|C1CES2|VATA_STRZJ V-type ATP synthase alpha chain OS=Streptococcus pneumoniae (strain
JJA) GN=atpA PE=3 SV=1
Length = 591
Score = 33.9 bits (76), Expect = 0.39, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 31 YGRNGVLTDITS--FGTVQLGYGIKKLDGRYYQGQLMQ 66
YG +G + I S F ++ Y IKKLDG +Y+G LMQ
Sbjct: 153 YGVSGEVVSIASGDFTIDEVVYEIKKLDGSFYKGTLMQ 190
>sp|Q97QA8|VATA_STRPN V-type ATP synthase alpha chain OS=Streptococcus pneumoniae
serotype 4 (strain ATCC BAA-334 / TIGR4) GN=atpA PE=3
SV=1
Length = 591
Score = 33.9 bits (76), Expect = 0.39, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 31 YGRNGVLTDITS--FGTVQLGYGIKKLDGRYYQGQLMQ 66
YG +G + I S F ++ Y IKKLDG +Y+G LMQ
Sbjct: 153 YGVSGEVVSIASGDFTIDEVVYEIKKLDGSFYKGTLMQ 190
>sp|B8ZK31|VATA_STRPJ V-type ATP synthase alpha chain OS=Streptococcus pneumoniae (strain
ATCC 700669 / Spain 23F-1) GN=atpA PE=3 SV=1
Length = 591
Score = 33.9 bits (76), Expect = 0.39, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 31 YGRNGVLTDITS--FGTVQLGYGIKKLDGRYYQGQLMQ 66
YG +G + I S F ++ Y IKKLDG +Y+G LMQ
Sbjct: 153 YGVSGEVVSIASGDFTIDEVVYEIKKLDGSFYKGTLMQ 190
>sp|A4J9Q5|RS6_DESRM 30S ribosomal protein S6 OS=Desulfotomaculum reducens (strain
MI-1) GN=rpsF PE=3 SV=1
Length = 95
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQ 63
Y+ M ++KP V +E + L+ + V + +T + +G +L Y I K+ +G
Sbjct: 4 YEVMYIIKPEVEEEKVTALMEKFKSVVEEKGAEVTKLDKWGKRRLAYEINKIK----EGI 59
Query: 64 LMQMTMMSTPNINKELQYLNK-EDRLLRWLLVK 95
+ M + P + EL + K D ++R ++++
Sbjct: 60 YVLMQFKAEPAASAELDRVMKINDDIVRHMIIR 92
>sp|B1ICC9|VATA_STRPI V-type ATP synthase alpha chain OS=Streptococcus pneumoniae (strain
Hungary19A-6) GN=atpA PE=3 SV=1
Length = 591
Score = 33.5 bits (75), Expect = 0.45, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 31 YGRNGVLTDITS--FGTVQLGYGIKKLDGRYYQGQLMQ 66
YG +G + I S F ++ Y IKKLDG +Y+G LMQ
Sbjct: 153 YGISGEVVSIASGDFTIDEVVYEIKKLDGSFYKGTLMQ 190
>sp|A1KUF0|RS6_NEIMF 30S ribosomal protein S6 OS=Neisseria meningitidis serogroup C /
serotype 2a (strain ATCC 700532 / FAM18) GN=rpsF PE=3
SV=1
Length = 122
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQ 63
Y+ + ++ P + E + +V R + NG + + +G QL Y I K+ +Y
Sbjct: 4 YEIVFIVHPD-QSEQVPAMVERYKTMIAEANGKIHRLEDWGRRQLAYPINKIHKAHY--- 59
Query: 64 LMQMTMMSTPNINKELQYLNK-EDRLLRWLLVK 95
+ M + +TP + +EL+ + D +LR L +K
Sbjct: 60 -VLMNIETTPEVVEELETAFRFNDAVLRHLTIK 91
>sp|Q9JU24|RS6_NEIMA 30S ribosomal protein S6 OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=rpsF PE=3 SV=1
Length = 122
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQ 63
Y+ + ++ P + E + +V R + NG + + +G QL Y I K+ +Y
Sbjct: 4 YEIVFIVHPD-QSEQVPAMVERYKTMIAEANGKIHRLEDWGRRQLAYPINKIHKAHY--- 59
Query: 64 LMQMTMMSTPNINKELQYLNK-EDRLLRWLLVK 95
+ M + +TP + +EL+ + D +LR L +K
Sbjct: 60 -VLMNIETTPEVVEELETAFRFNDAVLRHLTIK 91
>sp|A9LZQ3|RS6_NEIM0 30S ribosomal protein S6 OS=Neisseria meningitidis serogroup C
(strain 053442) GN=rpsF PE=3 SV=1
Length = 122
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQ 63
Y+ + ++ P + E + +V R + NG + + +G QL Y I K+ +Y
Sbjct: 4 YEIVFIVHPD-QSEQVPAMVERYKTMIAEANGKIHRLEDWGRRQLAYPINKIHKAHY--- 59
Query: 64 LMQMTMMSTPNINKELQYLNK-EDRLLRWLLVK 95
+ M + +TP + +EL+ + D +LR L +K
Sbjct: 60 -VLMNIETTPEVVEELETAFRFNDAVLRHLTIK 91
>sp|A0PX87|RS6_CLONN 30S ribosomal protein S6 OS=Clostridium novyi (strain NT) GN=rpsF
PE=3 SV=1
Length = 95
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQ 63
Y+ + +L P + +E+ + + + GV+ ++ +G +L Y I K++ YY
Sbjct: 4 YETLFILNPSLDEEATKAAIEKFKGVIEKEGGVVENVDEWGRRKLAYPINKVNEGYYT-- 61
Query: 64 LMQMTMMSTPNINKELQYLNK-EDRLLRWLLV 94
+ + P + +EL+ + + D ++R+++V
Sbjct: 62 --LINFKANPELPRELERVFRITDGVMRFMVV 91
>sp|C0ZA47|RS6_BREBN 30S ribosomal protein S6 OS=Brevibacillus brevis (strain 47 / JCM
6285 / NBRC 100599) GN=rpsF PE=3 SV=1
Length = 95
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ M +L+P + +E + VAR V G ++ + G +L Y I K YY
Sbjct: 1 MRQYEVMYVLRPDLEEEKVKSNVARYSDVVTNYGGEISKLQEMGKRRLAYEINKFREGYY 60
Query: 61 QGQLMQMTMMSTPNINKELQYLNK-EDRLLRWLLVK 95
+ M + + E + L K D ++R++ V+
Sbjct: 61 ----VLMNFKANSDAVAEAERLMKINDDVIRFMFVR 92
>sp|O66474|RS6_AQUAE 30S ribosomal protein S6 OS=Aquifex aeolicus (strain VF5) GN=rpsF
PE=1 SV=1
Length = 110
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKL-DGRYYQG 62
Y+ + +KP + +E + + +V + + + G + +G QL Y I+K + RY+
Sbjct: 10 YETVFAVKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARYFLV 69
Query: 63 QLMQMTMMSTPNINKELQY-LNKEDRLLRWL 92
Q P + EL + L ++ ++RWL
Sbjct: 70 QF----KTENPQLPNELDFQLKIDEDVIRWL 96
>sp|O19917|RR6_CYACA 30S ribosomal protein S6, chloroplastic OS=Cyanidium caldarium
GN=rps6 PE=3 SV=1
Length = 103
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKL-DGRYYQG 62
Y+ ML+++P + +E ++ ++ + +H + ++++ G +L Y ++K DG Y Q
Sbjct: 14 YEIMLIMRPDLPEEKFLKFLSEIKEHAKRNLALEFNLSNRGRRKLAYAMRKFQDGIYIQF 73
Query: 63 QLMQMTMMSTPNINKELQYLNKEDRLLRWLLVK 95
+ S +N ++ L E+ +LR+++ K
Sbjct: 74 NFLG----SGYILNSLIKRLKLEESILRYIVQK 102
>sp|A5CY52|RS6_PELTS 30S ribosomal protein S6 OS=Pelotomaculum thermopropionicum
(strain DSM 13744 / JCM 10971 / SI) GN=rpsF PE=3 SV=1
Length = 95
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ + +L+P + +E E++ + + G + I +G +L Y +K +
Sbjct: 1 MRKYEVIFILRPDLEEEKNAEVIEKFKNLIESHGGEIIKIDKWGKRRLAYEVKD----FR 56
Query: 61 QGQLMQMTMMSTPNINKELQYLNK-EDRLLRWLLVK 95
+G + + + + P + EL + K D +LR ++V+
Sbjct: 57 EGFYIVIQINAEPKLAAELDRVFKITDEVLRHMIVR 92
>sp|A7ZEF6|RS6_CAMC1 30S ribosomal protein S6 OS=Campylobacter concisus (strain 13826)
GN=rpsF PE=3 SV=1
Length = 139
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQ 63
Y+ + +LKP + +E + V V + + G + + GT +L Y IKK Y +G
Sbjct: 4 YELLFILKPTLTEEEVKAKVDFVKEVITKNGGEIATVIEMGTRKLAYTIKK----YERGT 59
Query: 64 LMQMTMMSTPNINKEL-QYLNKEDRLLRWLLVKH 96
+ + P + EL + + + ++R+L VK+
Sbjct: 60 YFVIYYKAPPALLAELTRNVRITEDIIRFLSVKY 93
>sp|Q15ZV3|COAD_PSEA6 Phosphopantetheine adenylyltransferase OS=Pseudoalteromonas
atlantica (strain T6c / ATCC BAA-1087) GN=coaD PE=3 SV=1
Length = 160
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Query: 11 KPHVRKESLMELVARVGKH-----VYGRNGVLTDIT-SFGTVQLGYGIKKLDGRYYQGQL 64
KP + ++L+ V +H V G G+L D S G L G++ + Y+ QL
Sbjct: 43 KPLFSLQERVDLIKEVTEHLPNVEVIGFEGLLADFADSQGATVLIRGLRAVSDFEYEFQL 102
Query: 65 MQMTMMSTPNINKELQYLNKEDRLLRWLLVKHRGMKNGKEARYAETS-EADLKK 117
M PN+ +E+ + LVK + GK ++ + +A LK+
Sbjct: 103 ANMNRRLNPNLESIFLTPAEENSFISSTLVKEVALHRGKVDQFCHPAVQAALKE 156
>sp|B2G4Z1|RS6_LACRJ 30S ribosomal protein S6 OS=Lactobacillus reuteri (strain JCM
1112) GN=rpsF PE=3 SV=1
Length = 98
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKK-LDGRYYQG 62
Y+ +++P + + + ELV R K + + D + T + Y I K +G Y+
Sbjct: 6 YEITYIIRPDIEESAKSELVDRFDKILADNGATIADSKDWSTRRFAYPIAKYTEGTYH-- 63
Query: 63 QLMQMTMMSTPNINKELQYLNKEDRLLRWLLVK 95
++ +T S +N+ + D +LR ++VK
Sbjct: 64 -VVNLTTDSDQALNEFDRLAKFSDDILRHMIVK 95
>sp|A5VHF9|RS6_LACRD 30S ribosomal protein S6 OS=Lactobacillus reuteri (strain DSM
20016) GN=rpsF PE=3 SV=1
Length = 98
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKK-LDGRYYQG 62
Y+ +++P + + + ELV R K + + D + T + Y I K +G Y+
Sbjct: 6 YEITYIIRPDIEESAKSELVDRFDKILADNGATIADSKDWSTRRFAYPIAKYTEGTYH-- 63
Query: 63 QLMQMTMMSTPNINKELQYLNKEDRLLRWLLVK 95
++ +T S +N+ + D +LR ++VK
Sbjct: 64 -VVNLTTDSDQALNEFDRLAKFSDDILRHMIVK 95
>sp|B3PCS2|RS6_CELJU 30S ribosomal protein S6 OS=Cellvibrio japonicus (strain Ueda107)
GN=rpsF PE=3 SV=1
Length = 147
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 15/149 (10%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ ++L+ P + E + +V R V G + +G QL Y I K+ +Y
Sbjct: 1 MRHYEVVVLIHPD-QSEQVPAMVERYTSTVKADGGQVHRFEDWGRRQLAYSINKVHKAHY 59
Query: 61 QGQLMQMTMMSTPNINKELQYLNKEDRLLRWLLVKHRG--------MKNGKEARYAETSE 112
++ + + + +Y D +LR L+++ +K KE R +
Sbjct: 60 VLLNVECSDAALEELTTNFRY---NDAVLRSLVIREDAAITEESFILKAEKEGRERKARP 116
Query: 113 ADLKKYGPSAIYDF---EGIEEEDNDEEE 138
A ++ + D EG+E ED +EE+
Sbjct: 117 ARAERRDDTEAEDLSDEEGVEAEDFEEEQ 145
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,370,446
Number of Sequences: 539616
Number of extensions: 2472628
Number of successful extensions: 15060
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 175
Number of HSP's that attempted gapping in prelim test: 14530
Number of HSP's gapped (non-prelim): 647
length of query: 149
length of database: 191,569,459
effective HSP length: 107
effective length of query: 42
effective length of database: 133,830,547
effective search space: 5620882974
effective search space used: 5620882974
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)