Query 031985
Match_columns 149
No_of_seqs 154 out of 1145
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 12:48:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031985.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031985hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cqm_A Ribosomal protein S6; a 100.0 4.9E-35 1.7E-39 210.3 11.2 97 1-101 1-98 (101)
2 2j5a_A 30S ribosomal protein S 100.0 4.8E-34 1.6E-38 208.2 12.0 97 1-101 7-105 (110)
3 3r8n_F 30S ribosomal protein S 100.0 1.1E-34 3.8E-39 208.3 4.0 97 1-102 1-98 (100)
4 3bbn_F Ribosomal protein S6; s 100.0 8.9E-34 3E-38 220.6 8.2 101 1-101 62-168 (168)
5 3r3t_A 30S ribosomal protein S 100.0 7E-35 2.4E-39 209.0 -0.3 94 1-98 4-98 (99)
6 3i1m_F 30S ribosomal protein S 100.0 1.2E-33 4.2E-38 213.2 6.4 102 1-107 1-103 (135)
7 1vmb_A 30S ribosomal protein S 100.0 5.1E-33 1.7E-37 211.0 8.9 98 1-102 18-117 (140)
8 2kjw_A TS9, 30S ribosomal prot 99.8 2.4E-19 8.2E-24 128.1 3.8 54 1-54 43-96 (96)
9 3zzp_A TS9, ribosomal protein 99.1 2.8E-11 9.6E-16 82.9 2.9 46 60-105 3-50 (77)
10 2kjw_A TS9, 30S ribosomal prot 98.8 5.8E-10 2E-14 79.3 1.3 47 59-105 2-50 (96)
11 3zzp_A TS9, ribosomal protein 98.5 7.6E-08 2.6E-12 65.7 3.9 35 1-35 43-77 (77)
12 1wdd_S Ribulose bisphosphate c 75.0 1.3 4.6E-05 32.5 1.9 99 2-107 10-116 (128)
13 1rbl_M Ribulose 1,5 bisphospha 74.2 0.57 2E-05 33.5 -0.3 89 1-107 8-104 (109)
14 3zxw_B Ribulose bisphosphate c 58.8 1.7 5.8E-05 31.5 -0.4 90 2-109 8-105 (118)
15 3j20_L 30S ribosomal protein S 53.3 39 0.0013 23.3 6.0 74 15-88 12-94 (102)
16 1gk8_I Ribulose bisphosphate c 52.8 5.1 0.00017 29.8 1.3 99 2-107 10-123 (140)
17 1vq3_A Phosphoribosylformylgly 51.4 47 0.0016 22.7 6.1 65 1-88 15-86 (94)
18 2yy3_A Elongation factor 1-bet 49.1 55 0.0019 22.2 6.1 72 3-88 3-80 (91)
19 1svd_M Ribulose bisphosphate c 47.2 12 0.00041 26.6 2.5 87 2-106 11-105 (110)
20 1x0p_A Hypothetical protein TL 46.0 36 0.0012 24.6 5.1 75 1-94 1-78 (143)
21 3mb2_A 4-oxalocrotonate tautom 45.9 24 0.00083 21.9 3.7 30 1-32 1-30 (72)
22 3ip0_A 2-amino-4-hydroxy-6-hyd 44.4 12 0.0004 28.0 2.2 46 3-52 53-98 (158)
23 2zw2_A Putative uncharacterize 43.8 44 0.0015 22.4 5.0 72 3-97 7-85 (92)
24 2okq_A Hypothetical protein YB 42.7 19 0.00065 26.7 3.1 45 1-46 25-69 (141)
25 3lo3_A Uncharacterized conserv 42.0 45 0.0016 22.2 4.8 62 1-73 3-64 (94)
26 1u8s_A Glycine cleavage system 39.9 1E+02 0.0035 22.4 6.9 58 3-80 6-63 (192)
27 2x3d_A SSO6206; unknown functi 39.1 24 0.00082 24.6 3.0 29 25-53 63-93 (96)
28 1gtd_A MTH169; synthetase, FGA 37.6 52 0.0018 21.6 4.5 63 1-86 2-70 (85)
29 3u5c_U 40S ribosomal protein S 36.4 74 0.0025 22.6 5.4 74 15-88 30-112 (121)
30 1cbk_A Protein (7,8-dihydro-6- 36.2 20 0.00069 26.8 2.4 46 3-53 54-99 (160)
31 1bwv_S Rubisco, protein (ribul 35.8 38 0.0013 25.0 3.8 87 3-107 4-100 (138)
32 2lor_A Transmembrane protein 1 42.0 7.7 0.00026 27.6 0.0 35 19-54 28-62 (108)
33 2yx5_A UPF0062 protein MJ1593; 35.5 66 0.0023 20.9 4.7 63 1-86 1-70 (83)
34 2hfn_A Synechocystis photorece 32.5 91 0.0031 22.7 5.5 77 1-96 4-83 (153)
35 3bpd_A Uncharacterized protein 32.0 40 0.0014 23.6 3.2 30 24-53 63-94 (100)
36 3a6m_A Protein GRPE, HSP-70 co 31.9 13 0.00044 28.3 0.7 69 18-99 99-169 (177)
37 2i0f_A 6,7-dimethyl-8-ribityll 31.4 47 0.0016 24.7 3.8 55 1-55 5-63 (157)
38 2raq_A Conserved protein MTH88 30.8 31 0.0011 24.0 2.5 23 25-47 64-88 (97)
39 2g9p_A Antimicrobial peptide l 30.3 3.7 0.00013 21.7 -1.8 19 40-58 7-25 (26)
40 3abf_A 4-oxalocrotonate tautom 29.9 64 0.0022 18.9 3.6 31 1-33 1-31 (64)
41 3ej9_A Alpha-subunit of trans- 29.3 69 0.0023 20.1 3.9 30 1-32 1-30 (76)
42 2x4k_A 4-oxalocrotonate tautom 29.1 66 0.0022 18.5 3.5 31 1-33 3-33 (63)
43 1dkg_A Nucleotide exchange fac 28.8 25 0.00086 27.0 1.9 68 18-98 122-194 (197)
44 4fxv_A ELAV-like protein 1; RN 27.8 1E+02 0.0036 19.9 4.7 62 11-90 28-92 (99)
45 3fmb_A Dimeric protein of unkn 27.1 34 0.0012 23.7 2.2 40 7-46 26-67 (118)
46 3qbc_A 2-amino-4-hydroxy-6-hyd 26.7 49 0.0017 24.7 3.1 45 3-52 57-101 (161)
47 2ko1_A CTR148A, GTP pyrophosph 26.5 1.1E+02 0.0039 18.6 4.9 61 20-94 16-78 (88)
48 2ca6_A RAN GTPase-activating p 26.0 19 0.00066 28.6 0.8 6 89-94 305-310 (386)
49 2l42_A DNA-binding protein RAP 25.9 22 0.00077 25.1 1.0 23 20-42 29-51 (106)
50 1bxn_I Rubisco, protein (ribul 25.1 39 0.0013 24.9 2.2 87 3-107 4-100 (139)
51 1f60_B Elongation factor EEF1B 24.9 1.5E+02 0.005 20.1 5.1 66 8-85 13-79 (94)
52 1t4a_A PURS; tetramer, complex 24.6 1.3E+02 0.0046 19.5 4.7 63 1-86 1-69 (84)
53 1nxi_A Conserved hypothetical 24.2 87 0.003 22.3 4.0 41 3-46 81-121 (132)
54 2cg8_A Dihydroneopterin aldola 23.3 49 0.0017 26.4 2.8 45 3-52 171-215 (270)
55 2dnh_A Bruno-like 5, RNA bindi 22.9 1.3E+02 0.0046 19.0 4.5 53 11-82 24-76 (105)
56 1b64_A Elongation factor 1-bet 22.8 1.8E+02 0.0061 19.5 5.6 63 8-84 10-75 (91)
57 3mcm_A 2-amino-4-hydroxy-6-hyd 22.4 55 0.0019 28.3 3.0 48 1-52 77-124 (442)
58 2w0i_A Twinfilin-2; cytoskelet 21.1 47 0.0016 23.2 2.0 31 69-101 2-32 (135)
59 2ffg_A YKUJ; structural genomi 21.1 43 0.0015 22.9 1.6 34 18-51 3-40 (87)
60 1f9y_A HPPK, protein (6-hydrox 20.9 51 0.0017 24.5 2.2 46 3-52 53-98 (158)
61 1mww_A Hypothetical protein HI 20.5 1.2E+02 0.0043 20.5 4.1 43 11-53 67-127 (128)
62 1gh8_A Translation elongation 20.2 1.6E+02 0.0056 19.7 4.5 70 7-88 7-77 (89)
63 4f0h_B Ribulose bisphosphate c 20.2 1E+02 0.0034 22.6 3.6 79 12-107 12-100 (138)
No 1
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=100.00 E-value=4.9e-35 Score=210.34 Aligned_cols=97 Identities=19% Similarity=0.237 Sum_probs=92.7
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeecccccccccccccCccceeeEEEEEEEEEeCcchHHHHH
Q 031985 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQLMQMTMMSTPNINKELQ 80 (149)
Q Consensus 1 M~~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~~~~~~~G~Y~~~~f~a~p~~v~EL~ 80 (149)
||+||+|+|++|+++++++++++++++++|+++||+|+++++||+|+|||+|+|+ .+|+|++|+|+|+|+++++|+
T Consensus 1 M~~YE~~~Il~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~----~~G~Y~l~~f~a~~~~i~ele 76 (101)
T 1cqm_A 1 MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKD----PQGYFLWYQVEMPEDRVNDLA 76 (101)
T ss_dssp CEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTE----EEEEEEEEEEEECHHHHHHHH
T ss_pred CCceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCC----CEEEEEEEEEEeChHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999984 699999999999999999996
Q ss_pred -hhhccCCeeEEEEEeccCccc
Q 031985 81 -YLNKEDRLLRWLLVKHRGMKN 101 (149)
Q Consensus 81 -~lr~de~VLR~l~vK~~~~~~ 101 (149)
.|++|++||||++||+++...
T Consensus 77 r~lr~~~~VlR~l~vk~~~~~~ 98 (101)
T 1cqm_A 77 RELRIRDNVRRVMVVKSQEPFL 98 (101)
T ss_dssp HHHHTSTTEEEEEEEECSSCCC
T ss_pred HHhcCCcceEEEEEEEeccccc
Confidence 799999999999999987543
No 2
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=100.00 E-value=4.8e-34 Score=208.20 Aligned_cols=97 Identities=20% Similarity=0.454 Sum_probs=92.3
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeecccccccccccccCccceeeEEEEEEEEEe-CcchHHHH
Q 031985 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQLMQMTMMS-TPNINKEL 79 (149)
Q Consensus 1 M~~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~~~~~~~G~Y~~~~f~a-~p~~v~EL 79 (149)
||+||+|+|++|++++++++++++++.++|+++||+|+++++||+|+|||+|+|+ .+|+|++|+|+| +|+++++|
T Consensus 7 M~~YE~~~Il~p~l~~e~~~~~v~~~~~~i~~~Gg~i~~~e~wG~R~LAY~I~K~----~~G~Y~l~~f~a~~~~~i~el 82 (110)
T 2j5a_A 7 LRYYETVFAVKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKF----NNARYFLVQFKTENPQLPNEL 82 (110)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEECSSCSSSC----SEEEEEEEEEEESCTTHHHHH
T ss_pred CCcceEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCC----CEEEEEEEEEEeCCHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999985 499999999999 99999999
Q ss_pred H-hhhccCCeeEEEEEeccCccc
Q 031985 80 Q-YLNKEDRLLRWLLVKHRGMKN 101 (149)
Q Consensus 80 ~-~lr~de~VLR~l~vK~~~~~~ 101 (149)
+ .|++|++||||++||+++...
T Consensus 83 er~lr~~e~VlR~livk~~~~~~ 105 (110)
T 2j5a_A 83 DFQLKIDEDVIRWLNIQIKESEV 105 (110)
T ss_dssp HHHHHHCTTEEEEEEEEECGGGC
T ss_pred HHHhCCCcCeEEEEEEEcccccc
Confidence 6 799999999999999986543
No 3
>3r8n_F 30S ribosomal protein S6; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_F 3fih_F* 3iy8_F 3j18_F* 2wwl_F 3oar_F 3oaq_F 3ofb_F 3ofa_F 3ofp_F 3ofx_F 3ofy_F 3ofo_F 3r8o_F 4a2i_F 4gd1_F 4gd2_F 2gy9_F 2gyb_F
Probab=100.00 E-value=1.1e-34 Score=208.28 Aligned_cols=97 Identities=20% Similarity=0.414 Sum_probs=91.8
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeecccccccccccccCccceeeEEEEEEEEEeCcchHHHHH
Q 031985 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQLMQMTMMSTPNINKELQ 80 (149)
Q Consensus 1 M~~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~~~~~~~G~Y~~~~f~a~p~~v~EL~ 80 (149)
||+||+|+|++|+++ +++++++++++++|+++||+|+++++||+|+|||+|+|+ .+|+|++|+|+|+|++++||+
T Consensus 1 M~~YE~~~Il~p~~~-e~~~~~~~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k~----~~G~Y~l~~f~a~~~~i~ele 75 (100)
T 3r8n_F 1 MRHYEIVFMVHPDQS-EQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKL----HKAHYVLMNVEAPQEVIDELE 75 (100)
T ss_dssp CEEECCCCEECGGGT-THHHHHHHHHHHHHHTTTCBCCCCEEEEEECCSSCTTSC----SCEEEEECCEEECTTTTHHHH
T ss_pred CCceEEEEEECCCch-HHHHHHHHHHHHHHHHCCCEEEEEEeeecccCCeEcCCC----CEEEEEEEEEEeChHHHHHHH
Confidence 999999999999987 799999999999999999999999999999999999985 499999999999999999996
Q ss_pred -hhhccCCeeEEEEEeccCcccc
Q 031985 81 -YLNKEDRLLRWLLVKHRGMKNG 102 (149)
Q Consensus 81 -~lr~de~VLR~l~vK~~~~~~~ 102 (149)
.|++|++||||++||+++...+
T Consensus 76 r~lr~~~~VlR~livk~~~~~~~ 98 (100)
T 3r8n_F 76 TTFRFNDAVIRSMVMRTKHAVTE 98 (100)
T ss_dssp HHHHHCTTEEECCCCCCSSCCCC
T ss_pred HHhcCCCCeEEEEEEEeCccccC
Confidence 8999999999999999976544
No 4
>3bbn_F Ribosomal protein S6; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=8.9e-34 Score=220.63 Aligned_cols=101 Identities=21% Similarity=0.401 Sum_probs=97.2
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeecccccccccccccCc-----cceeeEEEEEEEEEeCcch
Q 031985 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLD-----GRYYQGQLMQMTMMSTPNI 75 (149)
Q Consensus 1 M~~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~~-----~~~~~G~Y~~~~f~a~p~~ 75 (149)
||.||+|+|++|++++++++++++++.++|+++||+|+++++||+|+|||+|+|++ ++|++|+|++|+|+|+|++
T Consensus 62 Mr~YE~m~IlrPdl~eeev~alver~~~iI~~~GG~I~~ve~WG~RrLAY~IkK~~kgg~~~~h~eG~Yvlm~F~a~p~~ 141 (168)
T 3bbn_F 62 LRQYETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFTKPES 141 (168)
T ss_dssp CEEEEEEEEECTTSCHHHHHSTTHHHHHHHTTTSCEEEEEEEEEECCCSSCTTSCSSSCSSCCCCCCEEEEEEEEECTTS
T ss_pred CCceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEecccccccceeccCcccccccccceEEEEEEEEEeCHHH
Confidence 89999999999999999999999999999999999999999999999999999998 7899999999999999999
Q ss_pred HHHHH-hhhccCCeeEEEEEeccCccc
Q 031985 76 NKELQ-YLNKEDRLLRWLLVKHRGMKN 101 (149)
Q Consensus 76 v~EL~-~lr~de~VLR~l~vK~~~~~~ 101 (149)
++||+ .|++|++||||++||+++.+|
T Consensus 142 I~ELeR~Lride~VLR~liVK~d~~k~ 168 (168)
T 3bbn_F 142 ISPLEAALVTDDDVIRSSSFKIRKRKY 168 (168)
T ss_dssp SHHHHHHHHTSSCCSEEECCBCCSCCC
T ss_pred HHHHHHHhcCCcCeeEEEEEecccccC
Confidence 99996 899999999999999997654
No 5
>3r3t_A 30S ribosomal protein S6; structural genomics, center for structural genomics of infec diseases, csgid, beta-barrel, cytosol; 2.30A {Bacillus anthracis}
Probab=100.00 E-value=7e-35 Score=208.99 Aligned_cols=94 Identities=22% Similarity=0.421 Sum_probs=90.3
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeecccccccccccccCccceeeEEEEEEEEEeCcchHHHHH
Q 031985 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQLMQMTMMSTPNINKELQ 80 (149)
Q Consensus 1 M~~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~~~~~~~G~Y~~~~f~a~p~~v~EL~ 80 (149)
||.||+|+|++|++++++++++++++.++|+++||+|+++++||+|+|||+|+|+ .+|+|++|+|+|+|++++||+
T Consensus 4 M~~YE~~~Il~p~~~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~----~~G~Y~l~~f~a~~~~i~ele 79 (99)
T 3r3t_A 4 MRKYEIMYIIRPGVEEEAQKALVERFAGVLTNNGAEIINTKEWGKRRLAYEINDL----REGFYMILNVNANAEAINEFD 79 (99)
T ss_dssp CCCCCCCCCCCTTSCHHHHHHHHHHHHHHHHTTTCCCCCCCCCCSCCCCCCCCCC----CCSCCCCCCCCCCHHHHHHHH
T ss_pred CcceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEeeccccCcCcCCC----CEEEEEEEEEEeCHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999985 499999999999999999996
Q ss_pred -hhhccCCeeEEEEEeccC
Q 031985 81 -YLNKEDRLLRWLLVKHRG 98 (149)
Q Consensus 81 -~lr~de~VLR~l~vK~~~ 98 (149)
.|++|++||||++||+++
T Consensus 80 r~lr~~~~VlR~livk~~~ 98 (99)
T 3r3t_A 80 RLAKINEDILRHIVVKEEE 98 (99)
T ss_dssp HHHHHCTTCCCCCCCCCC-
T ss_pred HHhcCCCCeEEEEEEEecC
Confidence 899999999999999875
No 6
>3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F 1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F 2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F* 2vho_F ...
Probab=100.00 E-value=1.2e-33 Score=213.17 Aligned_cols=102 Identities=19% Similarity=0.385 Sum_probs=94.7
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeecccccccccccccCccceeeEEEEEEEEEeCcchHHHHH
Q 031985 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQLMQMTMMSTPNINKELQ 80 (149)
Q Consensus 1 M~~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~~~~~~~G~Y~~~~f~a~p~~v~EL~ 80 (149)
||+||+|||++|+++ ++++++++++.++|+++||+|+++++||+|+|||+|+|+ .+|+|++|+|.|+|+++++|+
T Consensus 1 Mr~YE~~~Il~P~~~-e~v~~~ve~~~~~I~~~GG~I~~ve~wG~R~LAY~I~K~----~~G~Y~l~~f~a~~~~i~ELe 75 (135)
T 3i1m_F 1 MRHYEIVFMVHPDQS-EQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKL----HKAHYVLMNVEAPQEVIDELE 75 (135)
T ss_dssp CCEECBEEEECSTTT-TSHHHHHHHHHHHHHHTTCEECCCEEEEEECCSSCTTSS----SCEEEEECCEECCTTHHHHHH
T ss_pred CCceEEEEEECCCch-HHHHHHHHHHHHHHHHCCCEEEEEEeeccccCceEcCCC----CeEEEEEEEEEeCHHHHHHHH
Confidence 999999999999998 799999999999999999999999999999999999985 499999999999999999996
Q ss_pred -hhhccCCeeEEEEEeccCcccchhhhh
Q 031985 81 -YLNKEDRLLRWLLVKHRGMKNGKEARY 107 (149)
Q Consensus 81 -~lr~de~VLR~l~vK~~~~~~~~~~~~ 107 (149)
.|++|++||||++||+++...+.++|.
T Consensus 76 r~lri~e~VLR~livk~d~~~~~~s~~~ 103 (135)
T 3i1m_F 76 TTFRFNDAVIRSMVMRTKHAVTEASPMV 103 (135)
T ss_dssp HHHHHCSSEESCCBCCCSSCCCSCC---
T ss_pred HHhcCCCCeEEEEEEEeccCccCCChhh
Confidence 899999999999999999877777654
No 7
>1vmb_A 30S ribosomal protein S6; TM0603, structural genomics, JCSG, structure initiative, PSI, joint center for structural GENO translation; 1.70A {Thermotoga maritima} SCOP: d.58.14.1
Probab=99.98 E-value=5.1e-33 Score=210.96 Aligned_cols=98 Identities=22% Similarity=0.460 Sum_probs=92.8
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHHhhhccC-CcEEEeeecccccccccccccCccceeeEEEEEEEEEeCcchHHHH
Q 031985 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGR-NGVLTDITSFGTVQLGYGIKKLDGRYYQGQLMQMTMMSTPNINKEL 79 (149)
Q Consensus 1 M~~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~-GG~V~~ve~wG~R~LAY~IkK~~~~~~~G~Y~~~~f~a~p~~v~EL 79 (149)
|+.||+|||++|++++++++++++++.++|+++ ||+|+++++||+|+|||+|+|+ .+|+|++|+|.|+|+++++|
T Consensus 18 Mr~YE~~~Il~P~l~ee~v~~~ve~~~~~I~~~~GG~I~~ve~wG~R~LAY~I~K~----~~G~Yvl~~f~a~~~~i~EL 93 (140)
T 1vmb_A 18 ERIYESMFIIAPNVPEEERENLVERVKKIIEERVKGKIDKVERMGMRKFAYEIKKF----NEGDYTVIYFRCDGQNLQEL 93 (140)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEEEEEEETTE----EEEEEEEEEEEECSSSTHHH
T ss_pred cccceEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCcccccccCCC----CEEEEEEEEEEECHHHHHHH
Confidence 899999999999999999999999999999999 9999999999999999999984 59999999999999999999
Q ss_pred H-hhhccCCeeEEEEEeccCcccc
Q 031985 80 Q-YLNKEDRLLRWLLVKHRGMKNG 102 (149)
Q Consensus 80 ~-~lr~de~VLR~l~vK~~~~~~~ 102 (149)
+ .|++|++||||++||+++...+
T Consensus 94 er~lri~e~VLR~livK~~~~~~~ 117 (140)
T 1vmb_A 94 ENFYRVTPEIIRWQTFRRFDLEKK 117 (140)
T ss_dssp HHHHHTCTTEEEEEEEECHHHHHH
T ss_pred HHHhcCCcceeEEEEEEecccccc
Confidence 5 7999999999999999875433
No 8
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=99.76 E-value=2.4e-19 Score=128.12 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=53.1
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeeccccccccccccc
Q 031985 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKK 54 (149)
Q Consensus 1 M~~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK 54 (149)
|+.||+|+|++|++++++++++++++.++|+++||.|.++++||+|+|||+|+|
T Consensus 43 Mr~YE~m~Il~P~l~ee~~~~~ve~~~~iI~~~gG~i~~ve~WG~R~LAY~I~K 96 (96)
T 2kjw_A 43 PGRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVEELGLRRLAYPIAK 96 (96)
T ss_dssp SSCEEEEEECCSSCCHHHHHHHHHHHHHHHHHHTCCCSCCEECCCCCCCCSCCC
T ss_pred hhhhheeeeeCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccccccccccCCC
Confidence 899999999999999999999999999999999999999999999999999986
No 9
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=99.11 E-value=2.8e-11 Score=82.93 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=41.1
Q ss_pred eeEEEEEEEEEeCcchHHHHH-hhhccCCeeEEEEEeccC-cccchhh
Q 031985 60 YQGQLMQMTMMSTPNINKELQ-YLNKEDRLLRWLLVKHRG-MKNGKEA 105 (149)
Q Consensus 60 ~~G~Y~~~~f~a~p~~v~EL~-~lr~de~VLR~l~vK~~~-~~~~~~~ 105 (149)
.+|+|++|+|.|+|++++||+ .||++++|||||+||.++ .+|++-+
T Consensus 3 ~~G~Yvl~~~~a~~~~i~Eler~~rine~VlR~l~vr~d~~r~YE~m~ 50 (77)
T 3zzp_A 3 PQGYTTWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTTPGRYEVNI 50 (77)
T ss_dssp -CTTEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEEECSSTTEEEEEE
T ss_pred ceEEEEEEEEEeCHhHHHHHHHHhCCCHHHHHHHHHhccCCCceEEEE
Confidence 489999999999999999996 899999999999999997 5676655
No 10
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=98.84 E-value=5.8e-10 Score=79.35 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=40.2
Q ss_pred eeeEEEEEEEEEeCcchHHHHH-hhhccCCeeEEEEEeccC-cccchhh
Q 031985 59 YYQGQLMQMTMMSTPNINKELQ-YLNKEDRLLRWLLVKHRG-MKNGKEA 105 (149)
Q Consensus 59 ~~~G~Y~~~~f~a~p~~v~EL~-~lr~de~VLR~l~vK~~~-~~~~~~~ 105 (149)
+.+|+|++|+|+|+|+++++|+ .+|++++|||||+|+++. ..|++-+
T Consensus 2 ~~~g~Y~~~~~~a~~~~v~eler~~r~~e~vlR~l~v~~e~Mr~YE~m~ 50 (96)
T 2kjw_A 2 DPQGYFLWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTTPGRYEVNI 50 (96)
T ss_dssp TTSCCCEEECCCCCHHHHHHHHHHHHHCTTCSEEEEEECSSSSCEEEEE
T ss_pred CceEEEEEEEeecChhHHHHHHHHhccchhhhhhhheehhhhhhhheee
Confidence 3589999999999999999996 899999999999999993 3444433
No 11
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=98.51 E-value=7.6e-08 Score=65.72 Aligned_cols=35 Identities=11% Similarity=0.224 Sum_probs=33.6
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCc
Q 031985 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNG 35 (149)
Q Consensus 1 M~~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG 35 (149)
++.||+|||++|++++++++++++++.++|+++||
T Consensus 43 ~r~YE~m~Il~P~l~ee~~~~~vek~~~~i~~~Gg 77 (77)
T 3zzp_A 43 PGRYEVNIVLNPNLDQSQLQNEKEIIQRALENYGA 77 (77)
T ss_dssp TTEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 47899999999999999999999999999999998
No 12
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=75.03 E-value=1.3 Score=32.47 Aligned_cols=99 Identities=17% Similarity=0.196 Sum_probs=62.5
Q ss_pred CceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeecccccccccccccCccceeeEEEEEE----EEEeC--cch
Q 031985 2 PLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQLMQM----TMMST--PNI 75 (149)
Q Consensus 2 ~~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~~~~~~~G~Y~~~----~f~a~--p~~ 75 (149)
++||++--| |.++++++.+ +|.-+|. +| =+..+|.= ....+|+-..+--.++.|+|+.| -|.+. +++
T Consensus 10 ~~~~tfSyL-P~lt~eqI~k---QI~Yll~-qG-w~p~lEf~-d~~~~~R~~~~~~~~~~~~yW~mWkLPmFg~td~~~V 82 (128)
T 1wdd_S 10 KKFETLSYL-PPLTVEDLLK---QIEYLLR-SK-WVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQV 82 (128)
T ss_dssp CCCSTTTTS-SCCCHHHHHH---HHHHHHH-TT-CEEEEEEE-SCCSCBCSSCCSTTCCBSCCCEEESCCCTTCCCHHHH
T ss_pred ccccccccC-CCCCHHHHHH---HHHHHHH-CC-CeeeEEec-CCCceeeccCCCCCcccCCcccccCccCccCCCHHHH
Confidence 567774444 7789987655 5555553 34 34455543 44445554333335788999986 35554 567
Q ss_pred HHHHHhhhc--cCCeeEEEEEeccCcccchhhhh
Q 031985 76 NKELQYLNK--EDRLLRWLLVKHRGMKNGKEARY 107 (149)
Q Consensus 76 v~EL~~lr~--de~VLR~l~vK~~~~~~~~~~~~ 107 (149)
++||+..+. -..-||.+-+--......++||.
T Consensus 83 l~El~~C~k~~P~~YVRligfDn~~q~q~~sfIv 116 (128)
T 1wdd_S 83 LKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIA 116 (128)
T ss_dssp HHHHHHHHHHCTTSEEEEEEEETTTTEEEEEEEE
T ss_pred HHHHHHHHHHCCCCeEEEEEEeCCCCEEEEEEEE
Confidence 999986543 77889988876666666666654
No 13
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=74.22 E-value=0.57 Score=33.53 Aligned_cols=89 Identities=8% Similarity=0.002 Sum_probs=55.9
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeecccccccccccccCccceeeEEEEEE----EEEeC--cc
Q 031985 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQLMQM----TMMST--PN 74 (149)
Q Consensus 1 M~~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~~~~~~~G~Y~~~----~f~a~--p~ 74 (149)
|+.||++--| |.++++++.+ +|.-+|. +| =+-.+|.=- .+|..|+|+.| -|.+. ++
T Consensus 8 ~~~~etfSyL-P~lt~eqI~k---QI~Yll~-qG-w~p~lEf~d------------~~~~~~~yW~mwklPmf~~~d~~~ 69 (109)
T 1rbl_M 8 ERRFETFSYL-PPLSDRQIAA---QIEYMIE-QG-FHPLIEFNE------------HSNPEEFYWTMWKLPLFACAAPQQ 69 (109)
T ss_dssp CCCCSTTTTS-SCCCHHHHHH---HHHHHHH-HT-CEEEEEEES------------CCCTTCCCCEECSSCCTTCCCHHH
T ss_pred cccccccccC-CCCCHHHHHH---HHHHHHH-CC-CEEEEEecc------------CccccccEEeecccCCcCCCCHHH
Confidence 5778885444 7789987655 5555553 33 333444311 13557889988 67664 56
Q ss_pred hHHHHHhhhc--cCCeeEEEEEeccCcccchhhhh
Q 031985 75 INKELQYLNK--EDRLLRWLLVKHRGMKNGKEARY 107 (149)
Q Consensus 75 ~v~EL~~lr~--de~VLR~l~vK~~~~~~~~~~~~ 107 (149)
+++||+..+. -..-||.+-+--......++||.
T Consensus 70 Vl~Ele~C~k~~p~~yVRligfD~~~q~q~~sfIv 104 (109)
T 1rbl_M 70 VLDEVRECRSEYGDCYIRVAGFDNIKECQTSSFIV 104 (109)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEEETTTTEEEEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEEEEeCCCcEEEEEEEe
Confidence 8999986543 67788888775554555565543
No 14
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=58.82 E-value=1.7 Score=31.47 Aligned_cols=90 Identities=10% Similarity=0.088 Sum_probs=55.3
Q ss_pred CceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeecccccccccccccCccceeeEEEEEE----EEEeC--cch
Q 031985 2 PLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQLMQM----TMMST--PNI 75 (149)
Q Consensus 2 ~~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~~~~~~~G~Y~~~----~f~a~--p~~ 75 (149)
+.||++=-+ |.|+++++.+ +|.-+| +.|-+..+|.= +.+|..++|+.| -|.+. +++
T Consensus 8 kkfeTfSyL-P~Lt~eqI~k---QV~yll--~qGw~~~lE~~------------d~~~~~~~yW~mWklPmf~~~d~~~V 69 (118)
T 3zxw_B 8 RRYETFSYL-PPLSDAQIAR---QIQYAI--DQGYHPCVEFN------------ETSNAEIRYWTMWKLPLFNCTNAQDV 69 (118)
T ss_dssp ------CCS-CCCCHHHHHH---HHHHHH--HHTCEEEEEEE------------SCCCTTCCCCEEESSCCTTCCCHHHH
T ss_pred ccccccccC-CCCCHHHHHH---HHHHHH--hCCCeeEEEec------------cCCCcccCEEeecccCCcCCCCHHHH
Confidence 467776555 7789877655 555555 33455577641 225678888886 25554 558
Q ss_pred HHHHHhhhc--cCCeeEEEEEeccCcccchhhhhhh
Q 031985 76 NKELQYLNK--EDRLLRWLLVKHRGMKNGKEARYAE 109 (149)
Q Consensus 76 v~EL~~lr~--de~VLR~l~vK~~~~~~~~~~~~e~ 109 (149)
++||+..+. -..-||.+-+--......++||.-.
T Consensus 70 l~Ele~C~k~~p~~yVRliGfD~~~q~q~~sfIv~R 105 (118)
T 3zxw_B 70 LNEVQQCRSEYPNCFIRVVAFDNIKQCQVMSFIVYK 105 (118)
T ss_dssp HHHHHHHHHHCTTSEEEEEEEETTTTEEEEEEEEEC
T ss_pred HHHHHHHHHHCCCceEEEEEEeCCcCEEEEEEEEEC
Confidence 899986544 7789998888666666678886643
No 15
>3j20_L 30S ribosomal protein S10P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=53.28 E-value=39 Score=23.26 Aligned_cols=74 Identities=8% Similarity=0.100 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHhhhccCCcEEEeeecccccccccccccCc--------cce-eeEEEEEEEEEeCcchHHHHHhhhcc
Q 031985 15 RKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLD--------GRY-YQGQLMQMTMMSTPNINKELQYLNKE 85 (149)
Q Consensus 15 ~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~~--------~~~-~~G~Y~~~~f~a~p~~v~EL~~lr~d 85 (149)
....+...+..+.......|..|..--.+=.+++-|.+.|-. +.| .+=|.-++.+++++.++.+|-.+.+-
T Consensus 12 d~~~Ld~~~~~i~~~ak~~g~~v~GpiplPtk~~~~TvlrSPhv~gkksreqfE~r~hkRlIdi~~~~~~v~~l~~~~lp 91 (102)
T 3j20_L 12 NVRSLDEVANQIKQIAERTGVRMSGPIPLPTKRIRITTRKSPDGEGSATFDRWELRVHKRLIDIEADERAMRQIMRIRVP 91 (102)
T ss_dssp SHHHHHHHHHHHHHHHHSSSCEEEEEEEEEEEEECCEEECCSSCCSSCCEEECCEEEEEEEEEEEECHHHHHHHTTSCCC
T ss_pred CHHHHHHHHHHHHHHHHHhCCcccccccCCCcceEEEEEecCCCCCCcchhheEEEEEEEEEEEeCCHHHHHHHhcCcCC
Confidence 456778888888888899999998777777777777765431 111 23455567778999999988666665
Q ss_pred CCe
Q 031985 86 DRL 88 (149)
Q Consensus 86 e~V 88 (149)
+.|
T Consensus 92 ~GV 94 (102)
T 3j20_L 92 EDV 94 (102)
T ss_dssp SSC
T ss_pred CCc
Confidence 554
No 16
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=52.77 E-value=5.1 Score=29.81 Aligned_cols=99 Identities=13% Similarity=0.173 Sum_probs=61.9
Q ss_pred CceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeecccccccccccc-------cCccceeeEEEEEE----EEE
Q 031985 2 PLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIK-------KLDGRYYQGQLMQM----TMM 70 (149)
Q Consensus 2 ~~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~Ik-------K~~~~~~~G~Y~~~----~f~ 70 (149)
++||++--| |.++++++.+ +|.-+| ++|-. ..+|.= ...-||+-+ ...-.|+.|+|+.| -|.
T Consensus 10 ~~~etfSyL-P~lt~eqI~k---QI~YlL-~qGw~-p~lEf~-d~~~~~r~~~~~~~~~~~~~~yyd~~YW~mWkLPmFg 82 (140)
T 1gk8_I 10 KMFETFSYL-PPLTDEQIAA---QVDYIV-ANGWI-PCLEFA-EADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFG 82 (140)
T ss_dssp CCCSTTTTS-SCCCHHHHHH---HHHHHH-HTTCE-EEEEEE-CGGGTSCBCGGGGGCSSCCTTCCBTSSCEEESCCCTT
T ss_pred ceecccccC-CCCCHHHHHH---HHHHHH-HCCCE-eeEEec-cCCcceecccccccccccCCCcCcCCeeeeCCcCCcC
Confidence 567774444 7789987655 555566 44544 456544 333455322 22224788899886 355
Q ss_pred e--CcchHHHHHhhhc--cCCeeEEEEEeccCcccchhhhh
Q 031985 71 S--TPNINKELQYLNK--EDRLLRWLLVKHRGMKNGKEARY 107 (149)
Q Consensus 71 a--~p~~v~EL~~lr~--de~VLR~l~vK~~~~~~~~~~~~ 107 (149)
+ ++++++||+..+. -+.-||.+-+--......++||.
T Consensus 83 ~td~~qVl~El~~C~k~~P~~YVRligfDn~~q~q~~sfIV 123 (140)
T 1gk8_I 83 CRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLV 123 (140)
T ss_dssp CCCHHHHHHHHHHHHHHCTTSEEEEEEEETTTTEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCeEEEEEEeCCCCEEEEEEEe
Confidence 5 3568999986543 77889988876666666666654
No 17
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS; TM1244, PURS SUB 6.3.5.3), structural genomics, joint center for structural JCSG; 1.90A {Thermotoga maritima} SCOP: d.284.1.1 PDB: 3d54_B*
Probab=51.41 E-value=47 Score=22.67 Aligned_cols=65 Identities=14% Similarity=0.080 Sum_probs=40.9
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeecccccccccc-cccCccceeeEEEEEEEEEeC-----cc
Q 031985 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYG-IKKLDGRYYQGQLMQMTMMST-----PN 74 (149)
Q Consensus 1 M~~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~-IkK~~~~~~~G~Y~~~~f~a~-----p~ 74 (149)
|-..+..+.++|.+.+.+-+++...+ +.|.|. ++.- ..|.||.+..+++ .+
T Consensus 15 ~~~~~V~V~lKpgVlDPqG~aV~~aL-------------------~~LG~~~V~~V----R~GK~~el~~~~~~~~~a~~ 71 (94)
T 1vq3_A 15 LFKFAIDVQYRSNVRDPRGETIERVL-------------------REEKGLPVKKL----RLGKSIHLEVEAENKEKAYE 71 (94)
T ss_dssp EEEEEEEEEECTTSCCHHHHHHHHHH-------------------HHTTCCCEEEE----EEEEEEEEEEECSSHHHHHH
T ss_pred eEEEEEEEEECCCCcCcHHHHHHHHH-------------------HHcCCCcccee----eeeeEEEEEecCCCHHHHHH
Confidence 33467788889998888866665322 223332 3322 3899999999886 34
Q ss_pred hHHHH-HhhhccCCe
Q 031985 75 INKEL-QYLNKEDRL 88 (149)
Q Consensus 75 ~v~EL-~~lr~de~V 88 (149)
.+.+| +.|-.|+-|
T Consensus 72 ~v~~mc~kLLaNpVI 86 (94)
T 1vq3_A 72 IVKKACEELLVNPVV 86 (94)
T ss_dssp HHHHHHHHTTSCTTT
T ss_pred HHHHHHHHHcCCCcc
Confidence 56666 567556644
No 18
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}
Probab=49.09 E-value=55 Score=22.22 Aligned_cols=72 Identities=13% Similarity=0.224 Sum_probs=44.3
Q ss_pred ceeEEEEEc--CCCCHHHHHHHHHHHHhhhccCCcEEEeeecccccccccccccCccceeeEEEEEEEEEeCcc---hHH
Q 031985 3 LYDCMLLLK--PHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQLMQMTMMSTPN---INK 77 (149)
Q Consensus 3 ~YE~~~Ilr--p~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~~~~~~~G~Y~~~~f~a~p~---~v~ 77 (149)
.-..+++++ |.-.+..+.++.+++++++. .|..+.. +-...+||.|+|. ++.+-.+-. ...
T Consensus 3 ~~kv~v~l~V~P~d~etDl~~L~~~vk~~~~-~gl~w~~---~k~~pIafGlk~L----------~i~~vveD~~~~~tD 68 (91)
T 2yy3_A 3 DFNLVGVIRVMPTDPDVNLDELEEKLKKVIP-EKYGLAK---VEREPIAFGLVAL----------KFYVLGRDEEGYSFD 68 (91)
T ss_dssp SCCEEEEEEEEESSTTSCHHHHHHHHHHHSC-TTCEEEE---EEEEECTTSCEEE----------EEEEEECSSTTCCHH
T ss_pred cceEEEEEEECCCCCCCCHHHHHHHHHHhcc-CCcEEee---eeEEEEEcceeeE----------EEEEEEECCCccccH
Confidence 344555554 55556668888888888765 6655554 3457899999984 344444433 466
Q ss_pred HHH-hhhccCCe
Q 031985 78 ELQ-YLNKEDRL 88 (149)
Q Consensus 78 EL~-~lr~de~V 88 (149)
+|+ .+..-+.|
T Consensus 69 ~lee~i~~~e~V 80 (91)
T 2yy3_A 69 EVAEKFEEVENV 80 (91)
T ss_dssp HHHHHHHHSTTE
T ss_pred HHHHHHhcCCCc
Confidence 674 55543343
No 19
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=47.17 E-value=12 Score=26.57 Aligned_cols=87 Identities=11% Similarity=0.117 Sum_probs=53.4
Q ss_pred CceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeecccccccccccccCccceeeEEEEEE----EEEeC--cch
Q 031985 2 PLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQLMQM----TMMST--PNI 75 (149)
Q Consensus 2 ~~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~~~~~~~G~Y~~~----~f~a~--p~~ 75 (149)
+.||++--| |.++++++.+ +|.-+| ++|- +-.++.=-. +|..|+|+.| -|.+. +++
T Consensus 11 ~~~etfSyL-P~lt~eqI~k---QV~Yll-~qGw-~p~iEf~d~------------~~~~~~yW~mwklPmf~~~d~~~V 72 (110)
T 1svd_M 11 LKYETFSYL-PPMNAERIRA---QIKYAI-AQGW-SPGIEHVEV------------KNSMNQYWYMWKLPFFGEQNVDNV 72 (110)
T ss_dssp CCCSTTTTS-CCCCHHHHHH---HHHHHH-HTTC-EEEEEEECG------------GGTTCSCCEEESCCCTTCCCHHHH
T ss_pred ccccccccC-CCCCHHHHHH---HHHHHH-HCCC-eeEEEeccC------------CccCCcEEeecccCCcCCCCHHHH
Confidence 457774444 7789987655 555455 3443 335543221 3457888888 56664 568
Q ss_pred HHHHHhhhc--cCCeeEEEEEeccCcccchhhh
Q 031985 76 NKELQYLNK--EDRLLRWLLVKHRGMKNGKEAR 106 (149)
Q Consensus 76 v~EL~~lr~--de~VLR~l~vK~~~~~~~~~~~ 106 (149)
++||+..+. -..-||.+-+--......++||
T Consensus 73 l~El~~C~k~~p~~yVRligfD~~~q~q~~sfI 105 (110)
T 1svd_M 73 LAEIEACRSAYPTHQVKLVAYDNYAQSLGLAFV 105 (110)
T ss_dssp HHHHHHHHHHSTTSEEEEEEEETTTTEEEEEEE
T ss_pred HHHHHHHHHHCCCCeEEEEEEeCCCCEEEEEEE
Confidence 999986543 6778888777554455555554
No 20
>1x0p_A Hypothetical protein TLL0078; BLUF, FAD, structural genomics, electron transport; HET: FAD; 2.00A {Thermosynechococcus elongatus} SCOP: d.58.10.2
Probab=45.99 E-value=36 Score=24.64 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=52.0
Q ss_pred CCceeEEEEEcC--CCCHHHHHHHHHHHHhhhccCCcEEEeeecccccccccccccCccceeeEEEEEEEEEeCcchHHH
Q 031985 1 MPLYDCMLLLKP--HVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQLMQMTMMSTPNINKE 78 (149)
Q Consensus 1 M~~YE~~~Ilrp--~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~~~~~~~G~Y~~~~f~a~p~~v~E 78 (149)
|+++.++|+-++ .++..++.+++......=..+| |+.+=- +.|.+|+=..++++++|.+
T Consensus 1 M~L~~l~Y~S~~~~~~~~~~l~~Il~~a~~~N~~~~--ITG~Ll-----------------~~~g~F~Q~LEG~~~~V~~ 61 (143)
T 1x0p_A 1 MGLHRLIYLSCATDGLSYPDLRDIMAKSEVNNLRDG--ITGMLC-----------------YGNGMFLQTLEGDRQKVSE 61 (143)
T ss_dssp -CEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHT--CEEEEE-----------------EETTEEEEEEEEEHHHHHH
T ss_pred CccEEEEEEEeeCCCCCHHHHHHHHHHHHHhhhhcC--CEEEEE-----------------EcCCEEEEEecCCHHHHHH
Confidence 899999999775 4667888888877666655555 544422 2334455568899999999
Q ss_pred H-HhhhccCCeeEEEEE
Q 031985 79 L-QYLNKEDRLLRWLLV 94 (149)
Q Consensus 79 L-~~lr~de~VLR~l~v 94 (149)
| +++..|++=-...++
T Consensus 62 l~~rI~~D~RH~~v~~l 78 (143)
T 1x0p_A 62 TYARILKDPRHHSAEIV 78 (143)
T ss_dssp HHHHHHTCTTEEEEEEE
T ss_pred HHHHHhcCCCcCCeEEE
Confidence 8 788888875554444
No 21
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=45.95 E-value=24 Score=21.91 Aligned_cols=30 Identities=20% Similarity=0.154 Sum_probs=24.8
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHHhhhcc
Q 031985 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYG 32 (149)
Q Consensus 1 M~~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~ 32 (149)
||+..+-+. +..+.++.++|++.+.+.+.+
T Consensus 1 MP~I~I~~~--~grs~eqK~~L~~~it~~l~~ 30 (72)
T 3mb2_A 1 MLLLRITML--EGRSTEQKAELARALSAAAAA 30 (72)
T ss_dssp CEEEEEEEE--SCCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEc--CCCCHHHHHHHHHHHHHHHHH
Confidence 888887766 457899999999999988875
No 22
>3ip0_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; alpha beta, ATP-binding, folate biosynthesis, nucleotide-binding; HET: APC HHR HHS; 0.89A {Escherichia coli} PDB: 1eq0_A 1dy3_A* 1ex8_A* 1hka_A 1eqm_A* 1rao_A* 1rb0_A* 2f63_A 2f65_A 1q0n_A* 3ud5_A* 3ude_A* 3udv_A* 4f7v_A* 3kue_A 3hd2_A* 1f9h_A* 1g4c_A 1kbr_A 1hq2_A* ...
Probab=44.36 E-value=12 Score=28.00 Aligned_cols=46 Identities=17% Similarity=0.311 Sum_probs=34.1
Q ss_pred ceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeeccccccccccc
Q 031985 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGI 52 (149)
Q Consensus 3 ~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~I 52 (149)
++=+++.+...++..++-+.++. |++.-|.+++...||-|.|-=-|
T Consensus 53 FlN~vv~~~T~l~p~~LL~~l~~----IE~~~GR~r~~~~~gpRtiDlDI 98 (158)
T 3ip0_A 53 YLNAAVALETSLAPEELLNHTQR----IELQQGRVRKAERWGPRTLDLDI 98 (158)
T ss_dssp EEEEEEEEEECSCHHHHHHHHHH----HHHHTTCCCCSSTTCCCSCEEEE
T ss_pred hheeeeeeccCCCHHHHHHHHHH----HHHHhCCCcCcccCCCccHhhhh
Confidence 45678888888988776665554 55666788888899999875443
No 23
>2zw2_A Putative uncharacterized protein STS178; purine metabolism, ligase; 1.55A {Sulfolobus tokodaii}
Probab=43.79 E-value=44 Score=22.40 Aligned_cols=72 Identities=13% Similarity=0.095 Sum_probs=43.8
Q ss_pred ceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeeccccccccc-ccccCccceeeEEEEEEEEEeCc-----chH
Q 031985 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGY-GIKKLDGRYYQGQLMQMTMMSTP-----NIN 76 (149)
Q Consensus 3 ~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY-~IkK~~~~~~~G~Y~~~~f~a~p-----~~v 76 (149)
.+...+.++|.+.+.+-+++.. ....|.| .++. -..|.||.++.+++. ..+
T Consensus 7 ~~~V~V~lK~gVlDPqG~av~~-------------------al~~LG~~~V~~----VR~gK~~~l~~~~~~~~~a~~~v 63 (92)
T 2zw2_A 7 RVELIITNKEGVRDPEGETIQR-------------------YVVSRFSDKIIE----TRAGKYLVFRVNSSSQQEATELV 63 (92)
T ss_dssp EEEEEEEECTTSCCHHHHHHHH-------------------HTHHHHCTTEEE----EEEEEEEEEEEECSSHHHHHHHH
T ss_pred EEEEEEEECCCCcCcHHHHHHH-------------------HHHHcCCCChhh----eEEEEEEEEEecCCCHHHHHHHH
Confidence 4677788899988777655442 2223334 2443 248999999998752 345
Q ss_pred HHH-HhhhccCCeeEEEEEecc
Q 031985 77 KEL-QYLNKEDRLLRWLLVKHR 97 (149)
Q Consensus 77 ~EL-~~lr~de~VLR~l~vK~~ 97 (149)
.++ +.||+-+-||-...+.+.
T Consensus 64 ~~~~~~LrLaNpVie~y~~~~~ 85 (92)
T 2zw2_A 64 KKLADEMRLYNPIVHKIEIRAN 85 (92)
T ss_dssp HHHHHHTTSSCTTTEEEEEEEE
T ss_pred HHHHhhccccCcceeEEEEEEE
Confidence 556 468675556655444443
No 24
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=42.74 E-value=19 Score=26.74 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=36.6
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeeccccc
Q 031985 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTV 46 (149)
Q Consensus 1 M~~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R 46 (149)
|.-....+|.-|.-++++..+..++...+..+.| -++-++.||.-
T Consensus 25 M~YVDGFv~pVP~ankeaY~~~A~~a~~vfke~G-Al~~vEcWgdD 69 (141)
T 2okq_A 25 MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFG-ALRIVECWASD 69 (141)
T ss_dssp CCEEEEEEEEEEGGGHHHHHHHHHHHHHHHHHTT-CSEEEEEEEEE
T ss_pred CceEEEEEEECcHHHHHHHHHHHHHHHHHHHHhC-Ceeeeeeeccc
Confidence 5667888899999999999998888887776665 67889999864
No 25
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=42.05 E-value=45 Score=22.16 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=39.0
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeecccccccccccccCccceeeEEEEEEEEEeCc
Q 031985 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQLMQMTMMSTP 73 (149)
Q Consensus 1 M~~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~~~~~~~G~Y~~~~f~a~p 73 (149)
|+-| .+.-++.. ..+....=.+.+..++.+.||.+.-- | .... +... ...+.-+++.|.+-.
T Consensus 3 m~aY-~i~~~~v~-d~e~y~~Y~~~~~~~l~~~GG~~l~r---g-~~~~--lEG~---~~~~~~viieFps~~ 64 (94)
T 3lo3_A 3 ATAY-IIVGLTPK-DAEKLQQYGARVASTLAKYSGEVLVK---G-SVEQ--LHGK---FEHKAQVILEFPSRE 64 (94)
T ss_dssp CCEE-EEEEEEEC-CHHHHHHHHHHHHHHHHTTTCEEEEE---E-ECEE--EESC---CCCSEEEEEEESSHH
T ss_pred ccEE-EEEEEEEC-CHHHHHHHHHHHHHHHHHcCCEEEEE---c-cccc--ccCC---CCCCeEEEEECCCHH
Confidence 6777 43334443 57779999999999999999988643 3 2211 1111 114677899995433
No 26
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=39.90 E-value=1e+02 Score=22.40 Aligned_cols=58 Identities=9% Similarity=-0.038 Sum_probs=36.5
Q ss_pred ceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeecccccccccccccCccceeeEEEEEEEEEeCcchHHHHH
Q 031985 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQLMQMTMMSTPNINKELQ 80 (149)
Q Consensus 3 ~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~~~~~~~G~Y~~~~f~a~p~~v~EL~ 80 (149)
.|.+.++. |+- ..++.+++.++.++|+.|....-.. .. .+..+.+.|..++....+|+
T Consensus 6 ~~~itv~~-~Dr-----pGiva~vt~~La~~g~NI~d~~~~~-------~~-------~~f~~~~~v~~~~~~~~~l~ 63 (192)
T 1u8s_A 6 HLVITAVG-TDR-----PGICNEVVRLVTQAGCNIIDSRIAM-------FG-------KEFTLLMLISGSPSNITRVE 63 (192)
T ss_dssp EEEEEEEE-ECC-----TTHHHHHHHHHHHTTCEEEEEEEEE-------ET-------TEEEEEEEEEECHHHHHHHH
T ss_pred EEEEEEEc-CCC-----CcHHHHHHHHHHHCCCCEEeeeeee-------cC-------CceEEEEEEecCCCCHHHHH
Confidence 46555554 541 4578899999999999999877654 11 23334456666554455553
No 27
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=39.14 E-value=24 Score=24.57 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=20.5
Q ss_pred HHHhhhccCCcEEEeee--cccccccccccc
Q 031985 25 RVGKHVYGRNGVLTDIT--SFGTVQLGYGIK 53 (149)
Q Consensus 25 r~~~~I~~~GG~V~~ve--~wG~R~LAY~Ik 53 (149)
.+.+.|++.||+|.+++ --|.+-.-..|+
T Consensus 63 ~I~~~IE~~Gg~IHSIDEVvaG~~ive~~~~ 93 (96)
T 2x3d_A 63 DIRKMLEEEGCAIHSIDEVVSGNRIIEGKIK 93 (96)
T ss_dssp HHHHHHHHTTCEEEEEEEEEEESSCCCC---
T ss_pred HHHHHHHHcCCeEEeeeeeeecccccccccc
Confidence 44557788999999999 478877777766
No 28
>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI, protein structure initiative, NESG; 2.56A {Methanobacterium thermoautotrophicum} SCOP: d.284.1.1
Probab=37.60 E-value=52 Score=21.60 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=38.5
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeecccccccccccccCccceeeEEEEEEEEEeCc-----ch
Q 031985 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQLMQMTMMSTP-----NI 75 (149)
Q Consensus 1 M~~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~~~~~~~G~Y~~~~f~a~p-----~~ 75 (149)
|-.+...+.++|.+.+.+-+++...+ ..|.|.++. -..|.||.+..+++. ..
T Consensus 2 m~~~~V~V~lK~gVlDpqG~av~~al-------------------~~LG~~v~~----VR~gK~~~l~~~~~~~~~a~~~ 58 (85)
T 1gtd_A 2 KFMVEVRIRLKKGMLNPEAATIERAL-------------------ALLGYEVED----TDTTDVITFTMDEDSLEAVERE 58 (85)
T ss_dssp CEEEEEEEEECTTSCCHHHHHHHHHH-------------------HHHTCCCEE----EEEEEEEEEEECCSCHHHHHHH
T ss_pred CeEEEEEEEECCCCcCcHHHHHHHHH-------------------HHcCCChhe----EEEEEEEEEEecCCCHHHHHHH
Confidence 33567788889998888866655433 122333442 238999999888762 34
Q ss_pred HHHH-HhhhccC
Q 031985 76 NKEL-QYLNKED 86 (149)
Q Consensus 76 v~EL-~~lr~de 86 (149)
+.++ +.|-.|+
T Consensus 59 v~~~~~~LLaNp 70 (85)
T 1gtd_A 59 VEDMCQRLLCNP 70 (85)
T ss_dssp HHHHHHHTTCCT
T ss_pred HHHHHHHhcCCC
Confidence 5555 3553454
No 29
>3u5c_U 40S ribosomal protein S20; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_J 3o30_N 3o2z_N 3u5g_U 1s1h_J 3jyv_J*
Probab=36.37 E-value=74 Score=22.60 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHhhhccCCcEEEeeecccccccccccccCc--------cce-eeEEEEEEEEEeCcchHHHHHhhhcc
Q 031985 15 RKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLD--------GRY-YQGQLMQMTMMSTPNINKELQYLNKE 85 (149)
Q Consensus 15 ~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~~--------~~~-~~G~Y~~~~f~a~p~~v~EL~~lr~d 85 (149)
....+...+..+.......|..|..--.+=.+++-|.+.|-. ..| .+=|.-++.+.+++.++.+|-.+.+-
T Consensus 30 d~~~Ld~~~~~I~~~ak~~g~~v~GPipLPtk~~r~TvlRSPhv~gKkSreqFE~RtHKRlIdI~~~~~~v~~l~~~~lp 109 (121)
T 3u5c_U 30 KVKQLENVSSNIVKNAEQHNLVKKGPVRLPTKVLKISTRKTPNGEGSKTWETYEMRIHKRYIDLEAPVQIVKRITQITIE 109 (121)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCEEEEEEEEEEEEEEEEESSSSSCSSCCEEEEEEEEEEEEEEECCCHHHHHHHHHSSCC
T ss_pred CHHHHHHHHHHHHHHHHHhCCeeecCcCCCCcceEEEEEcCCCCCCCcchhheEEEEEEEEEEecCCHHHHHHHHcCcCC
Confidence 456678888888888889999988776666777777765431 111 22456667788888888888666665
Q ss_pred CCe
Q 031985 86 DRL 88 (149)
Q Consensus 86 e~V 88 (149)
+.|
T Consensus 110 ~GV 112 (121)
T 3u5c_U 110 PGV 112 (121)
T ss_dssp TTC
T ss_pred CCC
Confidence 555
No 30
>1cbk_A Protein (7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase); transferase; HET: ROI; 2.02A {Haemophilus influenzae} SCOP: d.58.30.1
Probab=36.21 E-value=20 Score=26.77 Aligned_cols=46 Identities=13% Similarity=0.245 Sum_probs=33.6
Q ss_pred ceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeecccccccccccc
Q 031985 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIK 53 (149)
Q Consensus 3 ~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~Ik 53 (149)
+|=+++.+...++..++-+.+++ |++.-|.++. ..||-|.|-=-|=
T Consensus 54 FlN~v~~~~T~l~p~~LL~~l~~----IE~~~GR~r~-~r~gpRtlDlDIL 99 (160)
T 1cbk_A 54 YVNAVAKIETELSPLKLLDELQR----IENEQGRVRL-RRWGERTLDLDIL 99 (160)
T ss_dssp EEEEEEEEEECSCHHHHHHHHHH----HHHHTTCCBC-STTSCBSCEEEEE
T ss_pred ceEEEEEEEeCCCHHHHHHHHHH----HHHHcCCCCC-CCCCCceeeEeee
Confidence 55678888889999887666664 4555567777 7899998765543
No 31
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=35.80 E-value=38 Score=24.95 Aligned_cols=87 Identities=8% Similarity=0.004 Sum_probs=51.3
Q ss_pred ceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeecccccccccccccCccceeeEEEEEE----EEEeC--cchH
Q 031985 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQLMQM----TMMST--PNIN 76 (149)
Q Consensus 3 ~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~~~~~~~G~Y~~~----~f~a~--p~~v 76 (149)
.||++--| |.++++++.+ +|.-+| ++|= +..++.=-. +|.+|+|+.| -|.+. ++++
T Consensus 4 ~~etfSyL-P~ltdeqI~k---QI~Yll-~qGw-~p~iEf~d~------------~~~r~~yW~mWkLPmF~~td~~~Vl 65 (138)
T 1bwv_S 4 TQGTFSFL-PDLTDEQIKK---QIDYMI-SKKL-AIGIEYTND------------IHPRNAYWEIWGLPLFDVTDPAAVL 65 (138)
T ss_dssp CCSTTTTS-CCCCHHHHHH---HHHHHH-HTTC-EEEEEEESC------------CCTTCCCCEECSSCBCSCCCHHHHH
T ss_pred ecceeccC-CCCCHHHHHH---HHHHHH-HCCC-eeeEEecCC------------CCCccCEEeccCCCCcCCCCHHHHH
Confidence 35663333 7789987665 555455 3443 335543211 2456889988 67774 5689
Q ss_pred HHHHhhhc--cCCeeEEEEEeccCccc--chhhhh
Q 031985 77 KELQYLNK--EDRLLRWLLVKHRGMKN--GKEARY 107 (149)
Q Consensus 77 ~EL~~lr~--de~VLR~l~vK~~~~~~--~~~~~~ 107 (149)
+||+.++. -..-||.+-+--..... .++||.
T Consensus 66 ~Ele~C~k~~p~~YVRliGfD~~~~~qs~~~sfIV 100 (138)
T 1bwv_S 66 FEINACRKARSNFYIKVVGFSSVRGIESTIISFIV 100 (138)
T ss_dssp HHHHHHHHHCTTSEEEEEEEECCTTTCEEEEEEEE
T ss_pred HHHHHHHHHCCCCeEEEEEEeCCCceEEEEEEEEE
Confidence 99986543 66777877664443222 466544
No 32
>2lor_A Transmembrane protein 141; helical bundle; NMR {Homo sapiens}
Probab=41.99 E-value=7.7 Score=27.55 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhhccCCcEEEeeeccccccccccccc
Q 031985 19 LMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKK 54 (149)
Q Consensus 19 ~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK 54 (149)
-.++++.+..+|+-.||.. -++....|+||||++-
T Consensus 28 S~Af~~Gl~tF~lG~~~~f-~~Q~~vqrklpYp~qw 62 (108)
T 2lor_A 28 SHAFMKGVFTFVTGTGMAF-GLQMFIQRKFPYPLQW 62 (108)
Confidence 3578888999999777654 7899999999999984
No 33
>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national project on protei structural and functional analyses; 2.30A {Methanocaldococcus jannaschii}
Probab=35.49 E-value=66 Score=20.94 Aligned_cols=63 Identities=16% Similarity=0.175 Sum_probs=37.9
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeeccccccccc-ccccCccceeeEEEEEEEEEeCc-----c
Q 031985 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGY-GIKKLDGRYYQGQLMQMTMMSTP-----N 74 (149)
Q Consensus 1 M~~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY-~IkK~~~~~~~G~Y~~~~f~a~p-----~ 74 (149)
|-.+...+.++|.+.+.+-+++...+ +.|.| .++.- ..|.||.+..+++. .
T Consensus 1 ~~~~~V~V~lK~gvlDpqG~av~~al-------------------~~lG~~~v~~V----r~gk~~~l~~~~~~~~~a~~ 57 (83)
T 2yx5_A 1 MYKATVIIKLKKGVLNPEGRTIQRAL-------------------NFLGFNNVKEV----QTYKMIDIIMEGENEEKVKE 57 (83)
T ss_dssp CEEEEEEEEECTTCCCHHHHHHHHHH-------------------HHTTCTTCCCC----CCCEEEEEEEC-CCHHHHHH
T ss_pred CeEEEEEEEECCCCcCcHHHHHHHHH-------------------HHcCCCChhhE----EEEEEEEEEecCCCHHHHHH
Confidence 44567778889998887766555332 23444 35433 38999999887762 3
Q ss_pred hHHHH-HhhhccC
Q 031985 75 INKEL-QYLNKED 86 (149)
Q Consensus 75 ~v~EL-~~lr~de 86 (149)
.+.++ +.|-.|+
T Consensus 58 ~v~~~~~~LLaNp 70 (83)
T 2yx5_A 58 EVEEMCKKLLANP 70 (83)
T ss_dssp HHHHHHHHTTCCT
T ss_pred HHHHHHHHhccCC
Confidence 35555 3553454
No 34
>2hfn_A Synechocystis photoreceptor (SLR1694); beta sheet ferredoxin-like fold, flavin binding protein, electron transport; HET: FMN; 1.80A {Synechocystis SP} PDB: 2hfo_A* 3mzi_A*
Probab=32.50 E-value=91 Score=22.74 Aligned_cols=77 Identities=10% Similarity=0.187 Sum_probs=52.4
Q ss_pred CCceeEEEEEcC--CCCHHHHHHHHHHHHhhhccCCcEEEeeecccccccccccccCccceeeEEEEEEEEEeCcchHHH
Q 031985 1 MPLYDCMLLLKP--HVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQLMQMTMMSTPNINKE 78 (149)
Q Consensus 1 M~~YE~~~Ilrp--~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~~~~~~~G~Y~~~~f~a~p~~v~E 78 (149)
|++|.++|+-++ .++..++.+++......=...| |+.+=- +.|.+|+=..++++++|..
T Consensus 4 ~~L~~liY~S~a~~~~~~~~l~~Il~~a~~~N~~~g--ITG~Ll-----------------~~~g~F~Q~LEG~~~~V~~ 64 (153)
T 2hfn_A 4 MSLYRLIYSSQGIPNLQPQDLKDILESSQRNNPANG--ITGLLC-----------------YSKPAFLQVLEGECEQVNE 64 (153)
T ss_dssp -CEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHT--CEEEEE-----------------EETTEEEEEEEEEHHHHHH
T ss_pred cceEEEEEEEeecCCCCHHHHHHHHHHHHHhhhhcC--cEEEEE-----------------EeCCEEEEEeeCCHHHHHH
Confidence 678899998764 4667888888887666555555 444422 2333455568899999999
Q ss_pred H-HhhhccCCeeEEEEEec
Q 031985 79 L-QYLNKEDRLLRWLLVKH 96 (149)
Q Consensus 79 L-~~lr~de~VLR~l~vK~ 96 (149)
| +++..|++=-...++-.
T Consensus 65 l~~rI~~D~RH~~v~~l~~ 83 (153)
T 2hfn_A 65 TYHRIVQDERHHSPQIIEC 83 (153)
T ss_dssp HHHHHHTCTTEEEEEEEEE
T ss_pred HHHHHhcCCCcCCeEEEEe
Confidence 8 78988887655554433
No 35
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=31.96 E-value=40 Score=23.56 Aligned_cols=30 Identities=10% Similarity=0.139 Sum_probs=22.6
Q ss_pred HHHHhhhccCCcEEEeee--cccccccccccc
Q 031985 24 ARVGKHVYGRNGVLTDIT--SFGTVQLGYGIK 53 (149)
Q Consensus 24 ~r~~~~I~~~GG~V~~ve--~wG~R~LAY~Ik 53 (149)
+.+.+.|++.||+|.+++ --|.+-.-|.=.
T Consensus 63 d~I~~~IE~~GgvIHSIDEVvaG~~iv~~~~~ 94 (100)
T 3bpd_A 63 EQIKGVIEDMGGVIHSVDEVVAGKIIVESVEG 94 (100)
T ss_dssp HHHHHHHHTTTCEEEEEEEEEEESSCCCCCC-
T ss_pred HHHHHHHHHcCCeEEeeeeeeecceeeeeecc
Confidence 355668889999999999 478777777544
No 36
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=31.92 E-value=13 Score=28.26 Aligned_cols=69 Identities=12% Similarity=0.112 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhhccCCcEEEeeecccccccccccccCccceeeEEEEEEEEEeCcc-hHHHHH-hhhccCCeeEEEEEe
Q 031985 18 SLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQLMQMTMMSTPN-INKELQ-YLNKEDRLLRWLLVK 95 (149)
Q Consensus 18 ~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~~~~~~~G~Y~~~~f~a~p~-~v~EL~-~lr~de~VLR~l~vK 95 (149)
.+.-+.+++.+++.+.| |..|..-|. +|-=.. .++. +...+++. ++..++ -+++.++|||...|+
T Consensus 99 Gv~m~~~~l~~~L~k~G--v~~i~~~Ge---~FDP~~-----HeAv---~~~~~~~gtVv~v~qkGY~l~dRvLRpA~V~ 165 (177)
T 3a6m_A 99 GVRAIRDGFFRILAGLG--VEEVPGEGE---AFDPRY-----HEAV---GLLPGEPGKVAKVFQRGFRMGEALVRPARVA 165 (177)
T ss_dssp HHHHHHHHHHHHHHHTT--CEECCCTTS---BCCTTT-----EEEE---EEEESSTTBEEEEEECCEEETTEEEECEEEE
T ss_pred HHHHHHHHHHHHHHHCC--CEEeCCCCC---CCCHHH-----hhhh---hcccCCcCeEEEEeecCeeeCCEEecCeEEE
Confidence 45566677888888888 556666676 222222 2332 22222444 444566 599999999999998
Q ss_pred ccCc
Q 031985 96 HRGM 99 (149)
Q Consensus 96 ~~~~ 99 (149)
+...
T Consensus 166 V~~~ 169 (177)
T 3a6m_A 166 VGEE 169 (177)
T ss_dssp EEEC
T ss_pred EeCC
Confidence 8753
No 37
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=31.40 E-value=47 Score=24.71 Aligned_cols=55 Identities=11% Similarity=0.118 Sum_probs=43.0
Q ss_pred CCceeE----EEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeecccccccccccccC
Q 031985 1 MPLYDC----MLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKL 55 (149)
Q Consensus 1 M~~YE~----~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~ 55 (149)
|+.+|. +.|+...-.++-...+++.+.+.+.+.|..|.-+.-=|--.||+-+++.
T Consensus 5 m~~~~~~~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~l 63 (157)
T 2i0f_A 5 MSKHEADAPHLLIVEARFYDDLADALLDGAKAALDEAGATYDVVTVPGALEIPATISFA 63 (157)
T ss_dssp ------CCCEEEEEEECSSHHHHHHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHH
T ss_pred cccccCCCcEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCeEEEECCcHHHHHHHHHHH
Confidence 555665 7788888889889999999999999999888888888999999988765
No 38
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=30.83 E-value=31 Score=23.99 Aligned_cols=23 Identities=9% Similarity=0.273 Sum_probs=16.6
Q ss_pred HHHhhhccCCcEEEeeec--ccccc
Q 031985 25 RVGKHVYGRNGVLTDITS--FGTVQ 47 (149)
Q Consensus 25 r~~~~I~~~GG~V~~ve~--wG~R~ 47 (149)
.+.+.|++.||+|.+++. -|.+-
T Consensus 64 ~I~~~IE~~Gg~IHSIDEVvaG~~i 88 (97)
T 2raq_A 64 EITRAIESYGGSIHSVDEVVAGRTM 88 (97)
T ss_dssp HHHHHHHHTTCEEEEEEEEEEESSC
T ss_pred HHHHHHHHcCCeEEeeeeeeeccee
Confidence 445577889999999993 45543
No 39
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=30.31 E-value=3.7 Score=21.66 Aligned_cols=19 Identities=37% Similarity=0.781 Sum_probs=14.2
Q ss_pred eecccccccccccccCccc
Q 031985 40 ITSFGTVQLGYGIKKLDGR 58 (149)
Q Consensus 40 ve~wG~R~LAY~IkK~~~~ 58 (149)
|..+|++.+.|.++|-.++
T Consensus 7 ikkfgrkaisyavkkargk 25 (26)
T 2g9p_A 7 IKKFGRKAISYAVKKARGK 25 (26)
T ss_dssp HHHHTSHHHHHHHHHTTCC
T ss_pred HHHHhHHHHHHHHHHHccC
Confidence 4568888899998876544
No 40
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=29.93 E-value=64 Score=18.87 Aligned_cols=31 Identities=26% Similarity=0.164 Sum_probs=23.8
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHHhhhccC
Q 031985 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGR 33 (149)
Q Consensus 1 M~~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~ 33 (149)
||+-++.++. ..+.++-+++++.+.+.+.+.
T Consensus 1 MP~i~i~~~~--g~s~eqk~~l~~~lt~~l~~~ 31 (64)
T 3abf_A 1 MVVLKVTLLE--GRPPEKKRELVRRLTEMASRL 31 (64)
T ss_dssp CEEEEEEEET--TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECC--CCCHHHHHHHHHHHHHHHHHH
Confidence 7777776553 368888899999999988763
No 41
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=29.26 E-value=69 Score=20.15 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=23.6
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHHhhhcc
Q 031985 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYG 32 (149)
Q Consensus 1 M~~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~ 32 (149)
||+.++-+. +..+.++.+++++.+.+.+.+
T Consensus 1 MP~I~I~~~--~Grs~eqK~~L~~~it~~l~~ 30 (76)
T 3ej9_A 1 MPMISCDMR--YGRTDEQKRALSAGLLRVISE 30 (76)
T ss_dssp -CEEEEEEE--TTCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEc--CCCCHHHHHHHHHHHHHHHHH
Confidence 888887665 346899999999999998875
No 42
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=29.08 E-value=66 Score=18.46 Aligned_cols=31 Identities=32% Similarity=0.368 Sum_probs=23.4
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHHhhhccC
Q 031985 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGR 33 (149)
Q Consensus 1 M~~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~ 33 (149)
||+-.+-++- ..+.++.+++.+.+.+.+.+.
T Consensus 3 MP~i~i~~~~--g~s~e~k~~l~~~l~~~l~~~ 33 (63)
T 2x4k_A 3 MPIVNVKLLE--GRSDEQLKNLVSEVTDAVEKT 33 (63)
T ss_dssp CCEEEEEEES--CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEcC--CCCHHHHHHHHHHHHHHHHHH
Confidence 7777775553 457888899999998888754
No 43
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=28.83 E-value=25 Score=27.00 Aligned_cols=68 Identities=13% Similarity=0.016 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhhccCCcEEEeeecccccccccccccCccceeeEEEEEEEEEe---Ccc-hHHHHH-hhhccCCeeEEE
Q 031985 18 SLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQLMQMTMMS---TPN-INKELQ-YLNKEDRLLRWL 92 (149)
Q Consensus 18 ~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~~~~~~~G~Y~~~~f~a---~p~-~v~EL~-~lr~de~VLR~l 92 (149)
.+.-+.+.+.+++.+.| |..|..-|. +|-=.- .++. +...+ ++. ++..++ -++++++|||..
T Consensus 122 Gv~~~~~~l~~~L~~~G--v~~i~~~G~---~FDP~~-----HeAv---~~~~~~~~~~~tVv~v~qkGY~l~dRvLRpA 188 (197)
T 1dkg_A 122 DIELTLKSMLDVVRKFG--VEVIAETNV---PLDPNV-----HQAI---AMVESDDVAPGNVLGIMQKGYTLNGRTIRAA 188 (197)
T ss_dssp HHHHHHHHHHHHHTTTT--EEEECCCSS---BCCTTS-----EEEE---EEEECSSSCTTBEEEEEECEEEETTEEEECE
T ss_pred HHHHHHHHHHHHHHHCC--CEEeCCCCC---CCCHHH-----hhee---eeecCCCCCcCeEEEEeeCCeeeCCEEecce
Confidence 45566678888888888 667777775 222221 2332 33322 333 444456 599999999999
Q ss_pred EEeccC
Q 031985 93 LVKHRG 98 (149)
Q Consensus 93 ~vK~~~ 98 (149)
.|++..
T Consensus 189 ~V~V~~ 194 (197)
T 1dkg_A 189 MVTVAK 194 (197)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 988754
No 44
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=27.75 E-value=1e+02 Score=19.86 Aligned_cols=62 Identities=10% Similarity=0.228 Sum_probs=34.3
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCcEEEeeecccccccccccccCccceeeEEEEEEEEEeCcchHHHHHh---hhccCC
Q 031985 11 KPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQLMQMTMMSTPNINKELQY---LNKEDR 87 (149)
Q Consensus 11 rp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~~~~~~~G~Y~~~~f~a~p~~v~EL~~---lr~de~ 87 (149)
.+.++++++.+++.++ |.|.++.-. . .+.. ...+| |-++.|....++.+.++. ..++.+
T Consensus 28 p~~~te~~L~~~F~~~--------G~I~~v~i~------~--d~~t-g~~kG-~afV~f~~~~~A~~Ai~~lng~~~~gr 89 (99)
T 4fxv_A 28 PQNMTQDELRSLFSSI--------GEVESAKLI------R--DKVA-GHSLG-YGFVNYVTAKDAERAINTLNGLRLQSK 89 (99)
T ss_dssp CTTCCHHHHHHHHHTT--------SCEEEEEEE------E--CSSS-CCEEE-EEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCHHHHHHHHHhc--------CCEEEeEee------e--cCCC-Ccccc-cEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3678888887776543 455555321 1 1111 12344 677899877666666654 344554
Q ss_pred eeE
Q 031985 88 LLR 90 (149)
Q Consensus 88 VLR 90 (149)
.||
T Consensus 90 ~l~ 92 (99)
T 4fxv_A 90 TIK 92 (99)
T ss_dssp ECE
T ss_pred EEE
Confidence 444
No 45
>3fmb_A Dimeric protein of unknown function and ferredoxi fold; YP_212648.1, stress responsive A/B barrel domain; HET: MSE; 1.85A {Bacteroides fragilis}
Probab=27.10 E-value=34 Score=23.74 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=26.7
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeee--ccccc
Q 031985 7 MLLLKPHVRKESLMELVARVGKHVYGRNGVLTDIT--SFGTV 46 (149)
Q Consensus 7 ~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve--~wG~R 46 (149)
++=++|..+.++.++.++++.+.+....|.|-.+. .||.-
T Consensus 26 lfklK~~~~~~~~~~~~~~~~~~l~~L~~~IP~i~~~~vG~~ 67 (118)
T 3fmb_A 26 LFKLRDDVPVEEKLVVMNSFKEAIEALPAKISVIRKIEVGLN 67 (118)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHTGGGTCTTCSEEEEEEC
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHhhccCCCeEEEEEecc
Confidence 44567888999888888777777766655554443 35653
No 46
>3qbc_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; protein-inhibitor complex, ferredoxin-like fold; HET: B55; 1.65A {Staphylococcus aureus}
Probab=26.70 E-value=49 Score=24.72 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=33.4
Q ss_pred ceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeeccccccccccc
Q 031985 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGI 52 (149)
Q Consensus 3 ~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~I 52 (149)
+|=+++.+...++..++-+.++.+.... |.++. ..||-|.|-=-|
T Consensus 57 FlN~v~~~~T~l~p~~LL~~l~~IE~~~----GR~R~-~r~gpRtlDlDI 101 (161)
T 3qbc_A 57 FLNLCVEIQTTLTVLQLLECCLKTEECL----HRIRK-ERWGPRTLDVDI 101 (161)
T ss_dssp EEEEEEEEEECSCHHHHHHHHHHHHHHH----HSCSC-GGGCCCCCEEEE
T ss_pred ceEEEEEEEeCCCHHHHHHHHHHHHHHh----CCCCC-CcCCCceEeEEE
Confidence 5667888999999988877777665554 55655 689999876444
No 47
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=26.55 E-value=1.1e+02 Score=18.61 Aligned_cols=61 Identities=7% Similarity=-0.031 Sum_probs=39.0
Q ss_pred HHHHHHHHhhhccCCcEEEeeecccccccccccccCccceeeEEEEEEEEEeC-cchHHHH-HhhhccCCeeEEEEE
Q 031985 20 MELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQLMQMTMMST-PNINKEL-QYLNKEDRLLRWLLV 94 (149)
Q Consensus 20 ~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~~~~~~~G~Y~~~~f~a~-p~~v~EL-~~lr~de~VLR~l~v 94 (149)
..++.++.+++.+.|+.|.++...-.. .-..+.+.+..+ +..+.++ +.|+.-+.|.+...+
T Consensus 16 ~G~L~~I~~~la~~~inI~~i~~~~~~--------------~~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~~ 78 (88)
T 2ko1_A 16 NGMTNQITGVISKFDTNIRTIVLNAKD--------------GIFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERL 78 (88)
T ss_dssp TTHHHHHHHHHTTSSSCEEEEEEEECS--------------SEEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEE
T ss_pred CcHHHHHHHHHHHCCCCeEEEEEEEcC--------------CEEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEEe
Confidence 345778888999999999887763211 011233444443 4566776 589888899875443
No 48
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=26.03 E-value=19 Score=28.62 Aligned_cols=6 Identities=33% Similarity=0.467 Sum_probs=2.4
Q ss_pred eEEEEE
Q 031985 89 LRWLLV 94 (149)
Q Consensus 89 LR~l~v 94 (149)
|+++.+
T Consensus 305 L~~L~l 310 (386)
T 2ca6_A 305 LLFLEL 310 (386)
T ss_dssp CCEEEC
T ss_pred ceEEEc
Confidence 344443
No 49
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=25.86 E-value=22 Score=25.09 Aligned_cols=23 Identities=9% Similarity=0.265 Sum_probs=17.5
Q ss_pred HHHHHHHHhhhccCCcEEEeeec
Q 031985 20 MELVARVGKHVYGRNGVLTDITS 42 (149)
Q Consensus 20 ~~lv~r~~~~I~~~GG~V~~ve~ 42 (149)
..-+++++.+|..+||.|..--.
T Consensus 29 ~~d~d~L~~lI~~nGG~Vl~~lP 51 (106)
T 2l42_A 29 LNDIDQLARLIRANGGEVLDSKP 51 (106)
T ss_dssp SSTHHHHHHHHHTTTSCCCEECC
T ss_pred hhHHHHHHHHHHhcCcEEhhhCc
Confidence 34467888899999999976544
No 50
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=25.07 E-value=39 Score=24.93 Aligned_cols=87 Identities=8% Similarity=0.031 Sum_probs=52.2
Q ss_pred ceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeecccccccccccccCccceeeEEEEEE----EEEeC--cchH
Q 031985 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQLMQM----TMMST--PNIN 76 (149)
Q Consensus 3 ~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~~~~~~~G~Y~~~----~f~a~--p~~v 76 (149)
.||++--| |.++++++.+ +|.-+|.+ | -+..++.=-. +|.+|+|+.| -|.+. ++++
T Consensus 4 ~~etfSyL-P~ltdeqI~k---QI~YlL~q-G-w~p~lE~~d~------------~~~r~~yW~mWkLPmF~~td~~~Vl 65 (139)
T 1bxn_I 4 TQGTFSFL-PELTDEQITK---QLEYCLNQ-G-WAVGLEYTDD------------PHPRNTYWEMFGLPMFDLRDAAGIL 65 (139)
T ss_dssp CCSBTTTS-SCCCHHHHHH---HHHHHHHH-T-CEEEEEEESC------------CCTTCCCCEESSSCBTTCCCHHHHH
T ss_pred ecceeccC-CCCCHHHHHH---HHHHHHHC-C-CeEEEEeccC------------CccccCEEeecCCCCcCCCCHHHHH
Confidence 36664334 7789987655 55555533 3 3334443211 3457889988 67764 5689
Q ss_pred HHHHhhhc--cCCeeEEEEEeccCccc--chhhhh
Q 031985 77 KELQYLNK--EDRLLRWLLVKHRGMKN--GKEARY 107 (149)
Q Consensus 77 ~EL~~lr~--de~VLR~l~vK~~~~~~--~~~~~~ 107 (149)
+||+.++. -..-||.+-+--..... .++||.
T Consensus 66 ~Ele~C~k~~p~~YVRliGfD~~~~~qs~~~sfIV 100 (139)
T 1bxn_I 66 MEINNARNTFPNHYIRVTAFDSTHTVESVVMSFIV 100 (139)
T ss_dssp HHHHHHHHHCSSSEEEEEEECTTTCCEEEEEECCC
T ss_pred HHHHHHHHHCCCCeEEEEEEeCCCceEEEEEEEEE
Confidence 99986543 67788887774433222 566654
No 51
>1f60_B Elongation factor EEF1BA; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: d.58.12.1 PDB: 1g7c_B* 2b7c_B 2b7b_B 1ije_B* 1ijf_B*
Probab=24.94 E-value=1.5e+02 Score=20.13 Aligned_cols=66 Identities=24% Similarity=0.312 Sum_probs=40.1
Q ss_pred EEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeecccccccccccccCccceeeEEEEEEEEEeCcchHHHHH-hhhcc
Q 031985 8 LLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQLMQMTMMSTPNINKELQ-YLNKE 85 (149)
Q Consensus 8 ~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~~~~~~~G~Y~~~~f~a~p~~v~EL~-~lr~d 85 (149)
+=+.|.-.+..+.++.+++.++. ..|.... ..-...+||.|+|.+ +.+.+.-.--...+|+ .+..-
T Consensus 13 l~VkP~d~etDl~~L~~~Vr~i~-~~Gl~wg---~~k~~piafGlkkL~--------i~~vveDd~~~tD~lee~i~~~ 79 (94)
T 1f60_B 13 LDVKPWDDETNLEEMVANVKAIE-MEGLTWG---AHQFIPIGFGIKKLQ--------INCVVEDDKVSLDDLQQSIEED 79 (94)
T ss_dssp EEEEESSTTSCHHHHHHHHHTCC-CTTEEEE---EEEEEEEETTEEEEE--------EEEEEETTTCCHHHHHHHHHTC
T ss_pred EEEccCCCCcCHHHHHHHHHHhC-cCCcEEE---EEEEEEEeeeeEEEE--------EEEEEECCccChHHHHHHHHhc
Confidence 33457666667888888888854 4554433 234567899999853 3444433334566774 56543
No 52
>1t4a_A PURS; tetramer, complex formyl glycinamide synthetase, FGAR, structural protein; 2.00A {Bacillus subtilis} SCOP: d.284.1.1 PDB: 1twj_A
Probab=24.60 E-value=1.3e+02 Score=19.45 Aligned_cols=63 Identities=17% Similarity=0.192 Sum_probs=37.4
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeeccccccccc-ccccCccceeeEEEEEEEEEeCc----ch
Q 031985 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGY-GIKKLDGRYYQGQLMQMTMMSTP----NI 75 (149)
Q Consensus 1 M~~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY-~IkK~~~~~~~G~Y~~~~f~a~p----~~ 75 (149)
|-.+...+.++|.+.+.+-+++.. +...|.| .++. -..|.||.+..+++. ..
T Consensus 1 ~~~~~V~V~lK~gVlDpqG~av~~-------------------al~~LG~~~v~~----VR~gK~~~l~~~~~~~~a~~~ 57 (84)
T 1t4a_A 1 MYKVKVYVSLKESVLDPQGSAVQH-------------------ALHSMTYNEVQD----VRIGKYMELTIEKSDRDLDVL 57 (84)
T ss_dssp CEEEEEEEEECTTSCCHHHHHHHH-------------------HHHHTTCTTEEE----EEEEEEEEEEECCCSSCHHHH
T ss_pred CeEEEEEEEECCCCcCcHHHHHHH-------------------HHHHcCCCChhh----eEEEEEEEEEecCchHHHHHH
Confidence 444677788899988777655442 2223334 3443 238999999888752 33
Q ss_pred HHHH-HhhhccC
Q 031985 76 NKEL-QYLNKED 86 (149)
Q Consensus 76 v~EL-~~lr~de 86 (149)
+.++ +.|-.|+
T Consensus 58 v~~~~~~LLaNp 69 (84)
T 1t4a_A 58 VKEMCEKLLANT 69 (84)
T ss_dssp HHHHHHHTTCCT
T ss_pred HHHHHHHhcCCC
Confidence 4555 3553454
No 53
>1nxi_A Conserved hypothetical protein VC0424; structural genomics, AB sandwich, COG 3076, ATCC NO. 51394D, NESG target OP3, PSI; NMR {Vibrio cholerae} SCOP: d.58.47.1
Probab=24.18 E-value=87 Score=22.27 Aligned_cols=41 Identities=12% Similarity=0.076 Sum_probs=33.8
Q ss_pred ceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeeccccc
Q 031985 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTV 46 (149)
Q Consensus 3 ~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R 46 (149)
.|.+.++..-.++.+.|.+.+..+..+..+.||. .+=||.-
T Consensus 81 ~~~~~i~~~~~l~~~~I~~~~~~L~~lA~~~~G~---YDGWGt~ 121 (132)
T 1nxi_A 81 LLCFDATMQSALDAKLIDEQVEKLVNLAEKFDII---YDGWGTY 121 (132)
T ss_dssp BEEEEEEEEECSCHHHHHHHHHHHHHHHHHHTCE---EEEEEEC
T ss_pred eEEEEEEEeccCCHHHHHHHHHHHHHHHHHhCcE---eeCcceE
Confidence 4777777777778889999999999999999995 4668863
No 54
>2cg8_A Dihydroneopterin aldolase 6-hydroxymethyl-7,8- dihydropterin synthase; lyase/transferase, folate biosynthesis, pyrophosphokinase, lyase; 2.9A {Streptococcus pneumoniae}
Probab=23.33 E-value=49 Score=26.44 Aligned_cols=45 Identities=9% Similarity=0.251 Sum_probs=24.5
Q ss_pred ceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeeccccccccccc
Q 031985 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGI 52 (149)
Q Consensus 3 ~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~I 52 (149)
++=+++.+...++..++-+.+.+ |++.-|.++. ..||-|.|-=-|
T Consensus 171 f~N~v~~~~t~l~p~~ll~~l~~----iE~~~GR~r~-~~~gpRtlDlDi 215 (270)
T 2cg8_A 171 FANQVVEVETWLPAQDLLETLLA----IESELGRVRE-VHWGPRLIDLDL 215 (270)
T ss_dssp CEEEEEEEEECSCHHHHHHHHHH----HHHHTTC-----------CEEEE
T ss_pred ceEEEEEEecCCCHHHHHHHHHH----HHHHcCCCCC-CCCCCcceeEee
Confidence 56678888889999887766664 4555667776 589999875444
No 55
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=22.87 E-value=1.3e+02 Score=18.96 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=29.1
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCcEEEeeecccccccccccccCccceeeEEEEEEEEEeCcchHHHHHhh
Q 031985 11 KPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQLMQMTMMSTPNINKELQYL 82 (149)
Q Consensus 11 rp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~~~~~~~G~Y~~~~f~a~p~~v~EL~~l 82 (149)
.+.++++++..++.+ .| .|..+.-.-.+ . ...+| |.++.|.....+.+.|+.|
T Consensus 24 p~~~t~~~l~~~F~~-------~G-~i~~v~i~~~~---------~-g~~~g-~afV~f~~~~~A~~Ai~~l 76 (105)
T 2dnh_A 24 NKQQSEEDVLRLFQP-------FG-VIDECTVLRGP---------D-GSSKG-CAFVKFSSHTEAQAAIHAL 76 (105)
T ss_dssp CTTCCHHHHHHHHTT-------TS-CEEEEEEEECS---------S-SCEEE-EEEEEESSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh-------cC-CeEEEEEEECC---------C-CCcCc-EEEEEeCCHHHHHHHHHHH
Confidence 456777776665543 33 45555422111 1 11234 7788997776666666544
No 56
>1b64_A Elongation factor 1-beta; guanine nucleotide exchange factor, G-protein, translation elongation; NMR {Homo sapiens} SCOP: d.58.12.1
Probab=22.80 E-value=1.8e+02 Score=19.55 Aligned_cols=63 Identities=25% Similarity=0.260 Sum_probs=39.3
Q ss_pred EEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeecccccccccccccCccceeeEEEEEEEEEeC--cchHHHHH-hhhc
Q 031985 8 LLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQLMQMTMMST--PNINKELQ-YLNK 84 (149)
Q Consensus 8 ~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~~~~~~~G~Y~~~~f~a~--p~~v~EL~-~lr~ 84 (149)
+=++|.-.+..+.++.++++++ ...|..... .-...+||.|+|. ++.+-.+ --...+|+ .+..
T Consensus 10 l~VkP~d~etDl~~L~~~Vr~i-~~~Gl~wg~---~k~~piafGikkL----------~i~~vveDd~v~tD~lee~i~~ 75 (91)
T 1b64_A 10 LDVKPWDDETDMAKLEECVRSI-QADGLVWGS---SKLVPVGYGIKKL----------QIQCVVEDDKVGTDMLEEQITA 75 (91)
T ss_dssp EEEEESSTTSCHHHHHHHHHHC-CCTTCEEEE---EEEEESSSSCEEE----------EEEEEECTTSSCHHHHHHHHTT
T ss_pred EEEccCCCCcCHHHHHHHHHHh-CcCCcEEEE---EEEEEEEeeEEEE----------EEEEEEECCccChHHHHHHHHh
Confidence 3455766667788888888885 445544433 3446789999984 3444433 33466774 5554
No 57
>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A*
Probab=22.37 E-value=55 Score=28.27 Aligned_cols=48 Identities=8% Similarity=0.207 Sum_probs=27.2
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeeccccccccccc
Q 031985 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGI 52 (149)
Q Consensus 1 M~~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~I 52 (149)
|++|=+++.+...++..++-+.++.+ ++.-|.+++...||-|.|-=-|
T Consensus 77 ~~FlN~v~~~~T~l~p~~LL~~l~~I----E~~~GR~r~~~~~gpRtiDlDI 124 (442)
T 3mcm_A 77 IRFLNTAVKISSSLKPDELLVLLKDI----ELKIGRDLNAPAWSPRVIDLDI 124 (442)
T ss_dssp CCEEEEEEEEEECCCHHHHHHHHHHH----HHHC-----------CCCEEEE
T ss_pred CCeEEEEEEEEeCCCHHHHHHHHHHH----HHHhCCCCCCCCCCCcceeeeE
Confidence 45788899999999998877666654 4555788766789999876444
No 58
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens}
Probab=21.13 E-value=47 Score=23.25 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=23.1
Q ss_pred EEeCcchHHHHHhhhccCCeeEEEEEeccCccc
Q 031985 69 MMSTPNINKELQYLNKEDRLLRWLLVKHRGMKN 101 (149)
Q Consensus 69 f~a~p~~v~EL~~lr~de~VLR~l~vK~~~~~~ 101 (149)
|..+++++..++.|+... .||++++.+....
T Consensus 2 ~~v~~e~~~a~~~lk~~~--~~~ii~~id~~~~ 32 (135)
T 2w0i_A 2 MPLQPEAQRALQQLKQKM--VNYIQMKLDLERE 32 (135)
T ss_dssp CCBCHHHHHHHHHHHTTS--CSEEEEEEETTTT
T ss_pred cccCHHHHHHHHHHHcCC--CcEEEEEEeCCCC
Confidence 445778888888777754 8999999976433
No 59
>2ffg_A YKUJ; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, unknown function; 2.31A {Bacillus subtilis} SCOP: d.317.1.1
Probab=21.05 E-value=43 Score=22.87 Aligned_cols=34 Identities=12% Similarity=0.068 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhhccCC--c--EEEeeecccccccccc
Q 031985 18 SLMELVARVGKHVYGRN--G--VLTDITSFGTVQLGYG 51 (149)
Q Consensus 18 ~~~~lv~r~~~~I~~~G--G--~V~~ve~wG~R~LAY~ 51 (149)
++..+++|+.+...+.. | .+|.++..|....-=.
T Consensus 3 qL~~II~RL~AM~~d~~~~~e~q~R~FE~~G~~~c~V~ 40 (87)
T 2ffg_A 3 QLMGIITRLQSLQETAEAANEPMQRYFEVNGEKICSVK 40 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHhccccCCccceeeeccCCEEEEEEE
Confidence 67899999999997765 4 8999999998875433
No 60
>1f9y_A HPPK, protein (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase); pyrophosphoryl transfer, catalytic mechanism, folate, ternary complex; HET: APC HHR; 0.89A {Escherichia coli} PDB: 1eq0_A 1dy3_A* 1ex8_A* 1eqm_A* 1hka_A 1q0n_A* 1rao_A* 1rb0_A* 2f63_A 2f65_A 3h4a_A* 3ip0_A* 3ud5_A* 3ude_A* 3udv_A* 4f7v_A* 3kue_A 3hd2_A* 1f9h_A* 1g4c_A ...
Probab=20.90 E-value=51 Score=24.47 Aligned_cols=46 Identities=17% Similarity=0.311 Sum_probs=33.2
Q ss_pred ceeEEEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeeccccccccccc
Q 031985 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGI 52 (149)
Q Consensus 3 ~YE~~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~I 52 (149)
+|=+++.+...++..++-+.++.+ ++.-|.++.-..||-|.|-=-|
T Consensus 53 FlN~v~~~~T~l~p~~LL~~l~~I----E~~~GR~r~~~~~gpRtlDlDI 98 (158)
T 1f9y_A 53 YLNAAVALETSLAPEELLNHTQRI----ELQQGRVRKAERWGPRTLDLDI 98 (158)
T ss_dssp EEEEEEEEEECSCHHHHHHHHHHH----HHHTTCCCCSSTTCCCSCEEEE
T ss_pred ceEEEEEEEeCCCHHHHHHHHHHH----HHHhCCCCCCCCCCCceEeEEE
Confidence 566788889999998877766654 4455677764689999876444
No 61
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=20.46 E-value=1.2e+02 Score=20.47 Aligned_cols=43 Identities=12% Similarity=0.121 Sum_probs=24.9
Q ss_pred cCCCCHHHHHHHHHHHHhhhccC-Cc-------EEEee--ecccc-------cc-cccccc
Q 031985 11 KPHVRKESLMELVARVGKHVYGR-NG-------VLTDI--TSFGT-------VQ-LGYGIK 53 (149)
Q Consensus 11 rp~l~~e~~~~lv~r~~~~I~~~-GG-------~V~~v--e~wG~-------R~-LAY~Ik 53 (149)
.+..+.++-+++++.+.+.+.+. |- .|..+ ++||. ++ |.|.|+
T Consensus 67 ~~grt~eqK~~l~~~l~~~l~~~lg~~~~~v~V~i~e~~~~~wg~gG~~~~~~~~~~~~~~ 127 (128)
T 1mww_A 67 MAGRMEGTKKRLIKMLFSELEYKLGIRAHDVEITIKEQPAHCWGFRGMTGDEARDLDYDIY 127 (128)
T ss_dssp ETTCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEECGGGEEETTEETTTCC-------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEECCHHHeeECCEEHHHHhccCCccc
Confidence 35578999999999999988763 21 34444 37883 33 777664
No 62
>1gh8_A Translation elongation factor 1BETA; alpha-beta sandwich, gene regulation, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.58.12.1
Probab=20.20 E-value=1.6e+02 Score=19.67 Aligned_cols=70 Identities=10% Similarity=0.185 Sum_probs=41.3
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhhhccCCcEEEeeecccccccccccccCccceeeEEEEEEEEEeCcchHHHHH-hhhcc
Q 031985 7 MLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQLMQMTMMSTPNINKELQ-YLNKE 85 (149)
Q Consensus 7 ~~Ilrp~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~~~~~~~G~Y~~~~f~a~p~~v~EL~-~lr~d 85 (149)
++=+.|.-.+..+.++.+++++++. .|..+.. +-...+||.|+|.+ +.+.+.-.--...+|+ .+..-
T Consensus 7 ~l~V~P~d~etDl~~L~~~vk~~~~-~gl~w~~---~k~~piafGlk~L~--------i~~vveD~~~~td~lee~i~~~ 74 (89)
T 1gh8_A 7 TIKVMPESPDVDLEALKKEIQERIP-EGTELHK---IDEEPIAFGLVALN--------VMVVVGDAEGGTEAAEESLSGI 74 (89)
T ss_dssp EEEEEESSSCCCHHHHHHHHHHHSC-TTSEECC---CCEEECSSSCEEEE--------EEEEESSSCGGGGHHHHHHTTS
T ss_pred EEEEccCCCCCCHHHHHHHHHHhcc-CCcEEee---eeEEEEEcceeeEE--------EEEEEEcCCcChHHHHHHHhcc
Confidence 3345576666678888888888765 5555443 44577999999843 3333322233455664 55543
Q ss_pred CCe
Q 031985 86 DRL 88 (149)
Q Consensus 86 e~V 88 (149)
++|
T Consensus 75 e~V 77 (89)
T 1gh8_A 75 EGV 77 (89)
T ss_dssp CSS
T ss_pred CCc
Confidence 333
No 63
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=20.18 E-value=1e+02 Score=22.65 Aligned_cols=79 Identities=9% Similarity=0.049 Sum_probs=48.0
Q ss_pred CCCCHHHHHHHHHHHHhhhccCCcEEEeeecccccccccccccCccceeeEEEEEE----EEEeC--cchHHHHHhhhc-
Q 031985 12 PHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQGQLMQM----TMMST--PNINKELQYLNK- 84 (149)
Q Consensus 12 p~l~~e~~~~lv~r~~~~I~~~GG~V~~ve~wG~R~LAY~IkK~~~~~~~G~Y~~~----~f~a~--p~~v~EL~~lr~- 84 (149)
|.++++++.+ +|.-+| ++| =+..++.=-. +|..++|+.| -|.+. ..++.||+..+.
T Consensus 12 P~ltd~qI~k---QI~YlL-~qG-w~~~iEf~d~------------~~~r~~yW~mWkLPmFg~~d~~~Vl~Ele~C~k~ 74 (138)
T 4f0h_B 12 PDLTDEQIKK---QIDYMI-SKK-LAIGIEYTND------------IHPRNSFWEMWGLPLFEVTDPAPVLFEINACRKA 74 (138)
T ss_dssp CCCCHHHHHH---HHHHHH-HTT-CEEEEEEESC------------CCTTCCCCEESSCCBCSCCSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHH---HHHHHH-hCC-CEEEEEeCCC------------CCCcCCEEeecCCCCcCCCCHHHHHHHHHHHHHH
Confidence 7789977555 555555 333 3445554222 2446888888 77774 467999986544
Q ss_pred -cCCeeEEEEEeccCcc--cchhhhh
Q 031985 85 -EDRLLRWLLVKHRGMK--NGKEARY 107 (149)
Q Consensus 85 -de~VLR~l~vK~~~~~--~~~~~~~ 107 (149)
-+.-||.+-+--.... ..++||.
T Consensus 75 ~p~~YVRliGfDn~~~~qs~~~sfIV 100 (138)
T 4f0h_B 75 KSNFYIKVVGFSSERGIESTIISFIV 100 (138)
T ss_dssp TTTSEEEEEEEECCTTTCEEEEEEEE
T ss_pred CCCCeEEEEEEeCCCceEEEEEEEEE
Confidence 6667787776433322 3556654
Done!