Query 031986
Match_columns 149
No_of_seqs 139 out of 1107
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 08:04:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031986.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031986hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 1.8E-54 4E-59 306.1 15.8 146 1-146 1-147 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 3.6E-53 7.9E-58 293.6 13.4 142 6-147 2-143 (148)
3 KOG0419 Ubiquitin-protein liga 100.0 1.1E-52 2.4E-57 284.0 13.3 145 2-146 1-145 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 1.9E-49 4.1E-54 283.0 17.3 142 5-146 2-143 (152)
5 PLN00172 ubiquitin conjugating 100.0 5.3E-49 1.2E-53 279.4 17.3 141 6-146 2-142 (147)
6 KOG0425 Ubiquitin-protein liga 100.0 3.5E-47 7.7E-52 264.2 14.7 147 1-147 1-161 (171)
7 cd00195 UBCc Ubiquitin-conjuga 100.0 1.3E-44 2.9E-49 255.5 16.5 139 8-146 2-141 (141)
8 PF00179 UQ_con: Ubiquitin-con 100.0 6.4E-45 1.4E-49 256.8 13.8 138 9-146 1-140 (140)
9 KOG0426 Ubiquitin-protein liga 100.0 8.7E-45 1.9E-49 245.8 12.8 145 2-146 1-159 (165)
10 KOG0418 Ubiquitin-protein liga 100.0 2.7E-44 5.9E-49 256.6 13.3 140 6-145 4-147 (200)
11 KOG0424 Ubiquitin-protein liga 100.0 1.3E-43 2.7E-48 243.2 13.6 145 2-146 1-152 (158)
12 KOG0421 Ubiquitin-protein liga 100.0 5.2E-44 1.1E-48 245.2 11.3 142 3-145 27-168 (175)
13 smart00212 UBCc Ubiquitin-conj 100.0 1.5E-42 3.3E-47 246.0 16.0 140 8-147 1-142 (145)
14 KOG0422 Ubiquitin-protein liga 100.0 1.1E-38 2.4E-43 217.9 12.5 141 5-146 2-144 (153)
15 KOG0416 Ubiquitin-protein liga 100.0 1.6E-36 3.4E-41 213.6 10.3 139 6-147 4-144 (189)
16 KOG0420 Ubiquitin-protein liga 100.0 4.5E-36 9.7E-41 211.7 11.0 140 4-146 27-170 (184)
17 KOG0423 Ubiquitin-protein liga 100.0 2.1E-36 4.5E-41 213.6 6.7 141 4-144 9-149 (223)
18 KOG0894 Ubiquitin-protein liga 100.0 4.2E-32 9.2E-37 197.8 13.4 116 1-118 1-119 (244)
19 KOG0427 Ubiquitin conjugating 100.0 2.3E-32 4.9E-37 185.2 11.1 118 5-123 15-134 (161)
20 KOG0429 Ubiquitin-conjugating 99.9 4E-25 8.7E-30 161.8 12.7 139 7-146 21-165 (258)
21 KOG0428 Non-canonical ubiquiti 99.9 8.5E-24 1.8E-28 157.2 9.7 110 4-116 10-122 (314)
22 KOG0895 Ubiquitin-conjugating 99.7 2.7E-18 5.9E-23 148.5 7.6 111 6-116 852-971 (1101)
23 KOG0895 Ubiquitin-conjugating 99.7 2.7E-16 5.8E-21 136.3 11.2 114 4-117 281-405 (1101)
24 KOG0896 Ubiquitin-conjugating 99.6 7.3E-15 1.6E-19 100.4 8.6 111 5-115 5-122 (138)
25 PF14461 Prok-E2_B: Prokaryoti 98.9 1.5E-08 3.2E-13 70.8 7.7 67 50-116 34-106 (133)
26 KOG0897 Predicted ubiquitin-co 98.6 3.7E-08 8.1E-13 65.8 3.3 73 54-126 13-89 (122)
27 PF05743 UEV: UEV domain; Int 98.3 2.5E-06 5.5E-11 58.7 6.1 78 34-116 32-117 (121)
28 PF08694 UFC1: Ubiquitin-fold 98.2 1E-06 2.2E-11 61.3 2.2 97 6-107 25-135 (161)
29 KOG3357 Uncharacterized conser 97.6 0.00018 3.8E-09 49.5 5.0 95 7-107 29-138 (167)
30 KOG2391 Vacuolar sorting prote 97.5 0.00043 9.4E-09 54.8 7.2 82 33-119 51-140 (365)
31 smart00591 RWD domain in RING 96.7 0.041 8.8E-07 36.1 9.8 27 50-76 39-65 (107)
32 PF05773 RWD: RWD domain; Int 96.6 0.0098 2.1E-07 39.4 6.0 69 7-76 3-73 (113)
33 PF14462 Prok-E2_E: Prokaryoti 96.5 0.047 1E-06 37.5 8.9 92 23-115 12-120 (122)
34 PF14457 Prok-E2_A: Prokaryoti 95.6 0.023 5E-07 41.0 4.4 61 56-116 57-126 (162)
35 PF09765 WD-3: WD-repeat regio 92.5 0.22 4.8E-06 39.3 4.4 86 6-114 100-186 (291)
36 KOG4018 Uncharacterized conser 89.3 1.6 3.4E-05 32.8 6.0 63 9-74 6-71 (215)
37 KOG0309 Conserved WD40 repeat- 87.3 3.6 7.8E-05 36.6 7.8 70 5-76 420-491 (1081)
38 PF14460 Prok-E2_D: Prokaryoti 79.1 2.9 6.3E-05 30.4 3.5 42 74-118 89-134 (175)
39 COG3140 Uncharacterized protei 72.1 5.5 0.00012 23.4 2.7 26 1-26 28-53 (60)
40 TIGR03737 PRTRC_B PRTRC system 71.4 8 0.00017 29.5 4.2 38 75-116 131-172 (228)
41 PF06113 BRE: Brain and reprod 70.0 15 0.00033 29.6 5.7 66 34-111 53-121 (333)
42 cd00421 intradiol_dioxygenase 58.1 18 0.00039 25.3 3.8 26 50-75 64-90 (146)
43 cd03457 intradiol_dioxygenase_ 54.5 22 0.00047 26.2 3.8 26 50-75 85-110 (188)
44 smart00340 HALZ homeobox assoc 52.3 13 0.00029 20.6 1.8 14 7-20 21-34 (44)
45 PF06113 BRE: Brain and reprod 51.3 38 0.00083 27.3 4.9 26 51-76 305-330 (333)
46 cd03459 3,4-PCD Protocatechuat 46.3 36 0.00078 24.3 3.8 26 50-75 71-101 (158)
47 PRK11700 hypothetical protein; 44.4 1.3E+02 0.0028 22.3 9.2 99 5-109 51-184 (187)
48 KOG0662 Cyclin-dependent kinas 44.4 25 0.00054 26.4 2.7 55 66-120 167-225 (292)
49 KOG0177 20S proteasome, regula 42.3 7.7 0.00017 28.7 -0.2 31 85-115 135-165 (200)
50 PRK05114 hypothetical protein; 36.6 36 0.00078 20.2 2.0 21 1-21 28-48 (59)
51 PF03366 YEATS: YEATS family; 34.7 1.2E+02 0.0026 19.2 4.8 40 35-76 2-41 (84)
52 KOG4445 Uncharacterized conser 34.4 54 0.0012 26.3 3.4 25 52-76 45-69 (368)
53 KOG3285 Spindle assembly check 33.5 83 0.0018 23.2 3.9 56 5-71 119-174 (203)
54 TIGR02423 protocat_alph protoc 33.5 69 0.0015 23.7 3.7 25 50-74 95-124 (193)
55 PF09606 Med15: ARC105 or Med1 33.3 14 0.00031 33.3 0.0 26 52-77 714-739 (799)
56 PF13950 Epimerase_Csub: UDP-g 32.1 45 0.00097 19.8 2.1 18 96-113 37-54 (62)
57 PF09280 XPC-binding: XPC-bind 31.6 71 0.0015 18.9 2.9 22 123-144 34-55 (59)
58 cd05845 Ig2_L1-CAM_like Second 31.6 1.4E+02 0.003 19.3 4.5 26 49-76 16-41 (95)
59 cd03463 3,4-PCD_alpha Protocat 31.0 82 0.0018 23.2 3.7 24 51-74 92-120 (185)
60 PLN03213 repressor of silencin 27.8 2.1E+02 0.0045 24.8 5.9 64 4-67 87-157 (759)
61 KOG1047 Bifunctional leukotrie 27.1 65 0.0014 28.0 2.9 29 47-76 248-279 (613)
62 COG0544 Tig FKBP-type peptidyl 26.8 1.2E+02 0.0027 25.4 4.5 16 52-67 209-224 (441)
63 PF00718 Polyoma_coat: Polyoma 26.4 1.6E+02 0.0034 23.4 4.6 40 48-90 193-234 (297)
64 PF04881 Adeno_GP19K: Adenovir 25.7 1.2E+02 0.0026 21.1 3.5 21 30-50 43-63 (139)
65 PHA02614 Major capsid protein 24.3 65 0.0014 26.2 2.3 44 44-90 207-252 (363)
66 PF09943 DUF2175: Uncharacteri 24.2 78 0.0017 21.0 2.3 19 36-56 2-20 (101)
67 COG3876 Uncharacterized protei 23.7 89 0.0019 25.4 2.9 81 67-147 295-408 (409)
68 PF14135 DUF4302: Domain of un 23.4 3.2E+02 0.007 20.5 5.9 24 4-27 8-34 (235)
69 KOG4064 Cysteine dioxygenase C 22.6 1.6E+02 0.0036 21.2 3.8 47 97-143 7-54 (196)
70 COG2847 Copper(I)-binding prot 22.4 1.5E+02 0.0034 21.1 3.7 28 36-63 104-131 (151)
71 COG3866 PelB Pectate lyase [Ca 21.9 1.8E+02 0.0039 23.5 4.2 38 36-74 198-239 (345)
72 PF12065 DUF3545: Protein of u 21.7 71 0.0015 19.1 1.5 13 7-19 36-48 (59)
73 TIGR02439 catechol_proteo cate 21.0 1.5E+02 0.0033 23.4 3.7 24 51-74 180-221 (285)
74 PF00845 Gemini_BL1: Geminivir 20.6 3E+02 0.0065 21.4 5.1 47 33-80 101-156 (276)
75 PF03701 UPF0181: Uncharacteri 20.3 85 0.0018 18.1 1.6 20 1-20 28-47 (51)
76 KOG0700 Protein phosphatase 2C 20.0 2.8E+02 0.006 23.0 5.1 31 59-89 303-333 (390)
77 cd03461 1,2-HQD Hydroxyquinol 20.0 1.6E+02 0.0035 23.1 3.7 25 50-74 171-213 (277)
78 PF04314 DUF461: Protein of un 20.0 1.3E+02 0.0028 19.8 2.8 27 36-62 77-103 (110)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-54 Score=306.05 Aligned_cols=146 Identities=49% Similarity=0.914 Sum_probs=142.5
Q ss_pred CCCCchHHHHHHHHHHHhhCCCCCeEEEecCC-CCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeecccc
Q 031986 1 MASGNLPRRIVKETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 79 (149)
Q Consensus 1 m~s~~~~kRl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~h 79 (149)
|++..+.+||++|++++++++++++++.+.++ |+++|++.|.||++|||+||.|++.|.||++||++||+|+|.++|||
T Consensus 1 ~~s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H 80 (153)
T COG5078 1 MSSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH 80 (153)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence 67777999999999999999999999999887 99999999999999999999999999999999999999999999999
Q ss_pred CcccCCCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCc
Q 031986 80 PNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPV 146 (149)
Q Consensus 80 pni~~~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v 146 (149)
||||.+|+||+++|.+.|+|++++++||.+|+++|.+||+++|+|.|||++|++|+++|.++||+++
T Consensus 81 PNV~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~ 147 (153)
T COG5078 81 PNVDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWV 147 (153)
T ss_pred CCcCCCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999876
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-53 Score=293.57 Aligned_cols=142 Identities=60% Similarity=0.988 Sum_probs=139.0
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcccCC
Q 031986 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 85 (149)
Q Consensus 6 ~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~~~ 85 (149)
+.+||.+|++++++++++|+++.++++|+++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||||++.
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~ 81 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSN 81 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCcc
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 86 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 86 G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
|.||+|+|.++|+|+.++.+||.+|+++|.+||+++|++.++|++|+.|+.+|.++||+++.
T Consensus 82 G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~ 143 (148)
T KOG0417|consen 82 GRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTR 143 (148)
T ss_pred ccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999863
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-52 Score=284.00 Aligned_cols=145 Identities=41% Similarity=0.812 Sum_probs=142.0
Q ss_pred CCCchHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCc
Q 031986 2 ASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPN 81 (149)
Q Consensus 2 ~s~~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpn 81 (149)
||..+.|||.+|+++++++++.||+..|.++|++.|.++|+||.+|||+||+|++.|+|+++||.+||.|+|.+.+||||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCc
Q 031986 82 IDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPV 146 (149)
Q Consensus 82 i~~~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v 146 (149)
||.+|.+|+|+|...|+|.|++..||.+||+||.+|++++|+|.+||++|++|+.+|.+++|+.|
T Consensus 81 vya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~v 145 (152)
T KOG0419|consen 81 VYADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETV 145 (152)
T ss_pred cCCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999865
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.9e-49 Score=282.96 Aligned_cols=142 Identities=65% Similarity=1.104 Sum_probs=138.6
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcccC
Q 031986 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK 84 (149)
Q Consensus 5 ~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~~ 84 (149)
++.|||++|++++++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 2 ~~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~ 81 (152)
T PTZ00390 2 SISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK 81 (152)
T ss_pred cHHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECC
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCc
Q 031986 85 LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPV 146 (149)
Q Consensus 85 ~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v 146 (149)
+|.||+++|.++|+|++|+++||.+|+++|.+|++++|+|.+||++|++|+++|.++||++.
T Consensus 82 ~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~ 143 (152)
T PTZ00390 82 LGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWN 143 (152)
T ss_pred CCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999875
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=5.3e-49 Score=279.43 Aligned_cols=141 Identities=50% Similarity=0.902 Sum_probs=138.0
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcccCC
Q 031986 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 85 (149)
Q Consensus 6 ~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~~~ 85 (149)
+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+.+
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~ 81 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSN 81 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCc
Q 031986 86 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPV 146 (149)
Q Consensus 86 G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v 146 (149)
|.||++++.++|+|++++++||.+|+++|.+|++++|+|.+||++|.+|+++|.++||+++
T Consensus 82 G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~ 142 (147)
T PLN00172 82 GSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWT 142 (147)
T ss_pred CEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999876
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-47 Score=264.20 Aligned_cols=147 Identities=35% Similarity=0.702 Sum_probs=140.6
Q ss_pred CCCCchHHHHHHHHHHHhhCCCCCeEEEecCC-CCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeecccc
Q 031986 1 MASGNLPRRIVKETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 79 (149)
Q Consensus 1 m~s~~~~kRl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~h 79 (149)
|++..+..-|+++|++|++.+.+|+.+...++ |+++|.+.|+||++|+|+||.|+..+.||.+||.+||+++|.+.+||
T Consensus 1 m~~~~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwH 80 (171)
T KOG0425|consen 1 MTSSQASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWH 80 (171)
T ss_pred CccchhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcC
Confidence 67778889999999999999999999988654 99999999999999999999999999999999999999999999999
Q ss_pred CcccCCCcEEecCCC-------------CCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCc
Q 031986 80 PNIDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPV 146 (149)
Q Consensus 80 pni~~~G~ic~~~l~-------------~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v 146 (149)
||||++|.+|+++|- +.|+|..|+++||++|.+||.+||.++|+|.+||+.|++++++|.+++++||
T Consensus 81 PNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~v 160 (171)
T KOG0425|consen 81 PNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCV 160 (171)
T ss_pred CCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHH
Confidence 999999999999993 4799999999999999999999999999999999999999999999999998
Q ss_pred c
Q 031986 147 I 147 (149)
Q Consensus 147 ~ 147 (149)
.
T Consensus 161 r 161 (171)
T KOG0425|consen 161 R 161 (171)
T ss_pred H
Confidence 4
No 7
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=1.3e-44 Score=255.50 Aligned_cols=139 Identities=51% Similarity=0.930 Sum_probs=135.7
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcccCCCc
Q 031986 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGR 87 (149)
Q Consensus 8 kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~~~G~ 87 (149)
|||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||.|+|.++++||||+.+|.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCC-CCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCc
Q 031986 88 ICLDILKDK-WSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPV 146 (149)
Q Consensus 88 ic~~~l~~~-W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v 146 (149)
||++++... |+|++++++||.+|+++|.+|+.++++|.+||++|++|+++|.++|++++
T Consensus 82 icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 82 ICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 999999876 99999999999999999999999999999999999999999999999875
No 8
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=6.4e-45 Score=256.78 Aligned_cols=138 Identities=52% Similarity=0.958 Sum_probs=128.4
Q ss_pred HHHHHHHHHhhCCCCCeEEEecCC-CCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcccCCCc
Q 031986 9 RIVKETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGR 87 (149)
Q Consensus 9 Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~~~G~ 87 (149)
||++|+++++++++.|+.+.+.++ |+.+|+++|.||++|||+||.|+++|.||++||++||.|+|.|+++||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999886 9999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCC-CCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCc
Q 031986 88 ICLDILKD-KWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPV 146 (149)
Q Consensus 88 ic~~~l~~-~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v 146 (149)
+|+++|.. .|+|++++.+||.+|+++|.+|+.++++|.+|+++|++|+++|.++||+|.
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred chhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 99999985 599999999999999999999999999999999999999999999999873
No 9
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-45 Score=245.84 Aligned_cols=145 Identities=37% Similarity=0.730 Sum_probs=138.8
Q ss_pred CCCchHHHHHHHHHHHhhCCCCCeEEEe-cCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccC
Q 031986 2 ASGNLPRRIVKETQRLLSEPAPGISASP-AEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHP 80 (149)
Q Consensus 2 ~s~~~~kRl~~E~~~l~~~~~~~~~~~~-~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hp 80 (149)
+++.++|||++||++|..++++||.+.| .+||+++|.+.|.||++|+|+||.|..++.||.+||.+||+++|...+|||
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 4678999999999999999999999988 578999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcEEecCCC-------------CCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCc
Q 031986 81 NIDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPV 146 (149)
Q Consensus 81 ni~~~G~ic~~~l~-------------~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v 146 (149)
||+.+|++|+++|- +.|+|.++++.||.++-+||.+||-++.+|.+|+.++++|+++|.+.||+.|
T Consensus 81 Niy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lv 159 (165)
T KOG0426|consen 81 NIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLV 159 (165)
T ss_pred cccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999983 5799999999999999999999999999999999999999999999998765
No 10
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-44 Score=256.64 Aligned_cols=140 Identities=43% Similarity=0.809 Sum_probs=136.5
Q ss_pred hHHHHHHHHHHHhhCC---CCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcc
Q 031986 6 LPRRIVKETQRLLSEP---APGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (149)
Q Consensus 6 ~~kRl~~E~~~l~~~~---~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni 82 (149)
+.+||++|.+++.+++ ..||.++..++|+.+..+.|.||++||||||+|.++|++|++|||+||+|+|.|.||||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnV 83 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNV 83 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCC
Confidence 8899999999999987 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-CCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccC
Q 031986 83 DK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDP 145 (149)
Q Consensus 83 ~~-~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~ 145 (149)
.+ +|.||+|++.++|++++|+.++|++||++|..|++.+|.+...|++|.+|++.|.++||-|
T Consensus 84 Ss~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~W 147 (200)
T KOG0418|consen 84 SSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYW 147 (200)
T ss_pred CcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHH
Confidence 97 9999999999999999999999999999999999999999999999999999999999865
No 11
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-43 Score=243.24 Aligned_cols=145 Identities=32% Similarity=0.615 Sum_probs=137.9
Q ss_pred CCCchHHHHHHHHHHHhhCCCCCeEEEecC-----CCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeec
Q 031986 2 ASGNLPRRIVKETQRLLSEPAPGISASPAE-----DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 76 (149)
Q Consensus 2 ~s~~~~kRl~~E~~~l~~~~~~~~~~~~~~-----~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~ 76 (149)
+|+.++.||++|-+.+.++.+-|+++.|.. .|++.|.+.|.|+++|+||||.|.+++.||++||.+||+++|.++
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 577789999999999999999999998843 478999999999999999999999999999999999999999999
Q ss_pred cccCcccCCCcEEecCCCCC--CCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCc
Q 031986 77 IYHPNIDKLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPV 146 (149)
Q Consensus 77 i~hpni~~~G~ic~~~l~~~--W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v 146 (149)
+||||||.+|.||+++|.+. |+|+.||.+||.+|+.||.+||..+|+|.||...|.+|+.+|.++||.+.
T Consensus 81 l~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qa 152 (158)
T KOG0424|consen 81 LFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQA 152 (158)
T ss_pred CcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHH
Confidence 99999999999999999764 99999999999999999999999999999999999999999999998763
No 12
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-44 Score=245.22 Aligned_cols=142 Identities=43% Similarity=0.738 Sum_probs=137.6
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcc
Q 031986 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (149)
Q Consensus 3 s~~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni 82 (149)
++.+.|||++|+..|.....+||++.|++||++.|.++|.||++|+|+|-.|++.+.||.+||++||+|+|.++.|||||
T Consensus 27 ~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNV 106 (175)
T KOG0421|consen 27 GHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNV 106 (175)
T ss_pred CchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccC
Q 031986 83 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDP 145 (149)
Q Consensus 83 ~~~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~ 145 (149)
|..|.||+|+|.+.|+..|++++||.+||++|-+||.++|+|..||+++. |+++|.+.+.++
T Consensus 107 D~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~ 168 (175)
T KOG0421|consen 107 DLSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEAL 168 (175)
T ss_pred cccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997 999999887653
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=1.5e-42 Score=245.99 Aligned_cols=140 Identities=51% Similarity=0.941 Sum_probs=135.5
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCC-CCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcccCCC
Q 031986 8 RRIVKETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLG 86 (149)
Q Consensus 8 kRl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~~~G 86 (149)
+||++|++++++++++|+.+.+.++ |+++|+++|.||++|||+||.|++.|.||++||.+||+|+|.++++||||+++|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 6999999999999999999998775 999999999999999999999999999999999999999999999999999999
Q ss_pred cEEecCCC-CCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 87 RICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 87 ~ic~~~l~-~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
.+|++.+. ++|+|++++++||.+|+++|.+|+.++++|.+||++|++|++.|.++|++++.
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~ 142 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTK 142 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHH
Confidence 99999998 89999999999999999999999999999999999999999999999999763
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-38 Score=217.86 Aligned_cols=141 Identities=33% Similarity=0.688 Sum_probs=132.5
Q ss_pred chHHHHHHHHHHHhhCCCCCe-EEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCccc
Q 031986 5 NLPRRIVKETQRLLSEPAPGI-SASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID 83 (149)
Q Consensus 5 ~~~kRl~~E~~~l~~~~~~~~-~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~ 83 (149)
.+.+||.+|+.+|++++...+ .+..+++|++.|++.|. |.+-||..|.|+++|.||.+|||+||.|.|.|.|||||||
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD 80 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD 80 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence 467999999999999887755 35667889999999999 8999999999999999999999999999999999999999
Q ss_pred CCCcEEecCC-CCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCc
Q 031986 84 KLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPV 146 (149)
Q Consensus 84 ~~G~ic~~~l-~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v 146 (149)
+.|.+|+.++ .++|.|+...+++|..|.+++.+|++++|++.|+|..|.+|+..|.++|.+.+
T Consensus 81 e~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~t 144 (153)
T KOG0422|consen 81 EKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFT 144 (153)
T ss_pred CCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHH
Confidence 9999999998 48999999999999999999999999999999999999999999999998764
No 15
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-36 Score=213.61 Aligned_cols=139 Identities=37% Similarity=0.709 Sum_probs=129.7
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcccC-
Q 031986 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK- 84 (149)
Q Consensus 6 ~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~~- 84 (149)
..||+..|..+|... +..|...++++.++++.+.||.+|||+||++++++.+|++||++.|.|.|+++||||||+.
T Consensus 4 ~~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~ 80 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEA 80 (189)
T ss_pred cccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhc
Confidence 458999999888873 5678888889999999999999999999999999999999999999999999999999996
Q ss_pred CCcEEecCCCCCCCccCCHHHHHHHH-HHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 85 LGRICLDILKDKWSPALQIRTVLLSI-QALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 85 ~G~ic~~~l~~~W~p~~~i~~il~~i-~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
+|.||++.+.+.|+|.+.+..|+..+ -.||..||+.+|+|.+||.+|.+++++|.+++|+++.
T Consensus 81 SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~ 144 (189)
T KOG0416|consen 81 SGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIK 144 (189)
T ss_pred cCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999865 6799999999999999999999999999999998863
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-36 Score=211.69 Aligned_cols=140 Identities=34% Similarity=0.668 Sum_probs=121.9
Q ss_pred CchHHHHHHHHHHHhhCCCCCeEEE--ecCCCCc--eeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeecccc
Q 031986 4 GNLPRRIVKETQRLLSEPAPGISAS--PAEDNMR--YFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 79 (149)
Q Consensus 4 ~~~~kRl~~E~~~l~~~~~~~~~~~--~~~~~~~--~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~h 79 (149)
++++-||++|..++ +-++++++. ...++.+ ++.++|. |.++.|.||.|.|.+++|+.||..||+|++.+.+||
T Consensus 27 s~a~lrl~~di~el--nLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~H 103 (184)
T KOG0420|consen 27 SAALLRLKKDILEL--NLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYH 103 (184)
T ss_pred cHHHHHHHhhhhhc--cCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeecccc
Confidence 34555666665554 445555532 2234444 5999999 999999999999999999999999999999999999
Q ss_pred CcccCCCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCc
Q 031986 80 PNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPV 146 (149)
Q Consensus 80 pni~~~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v 146 (149)
|||+.+|.||+++|+++|+|..++.+|+.+|+.+|.+|+++||+|.+||+.+++|++.|...||+..
T Consensus 104 PNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m 170 (184)
T KOG0420|consen 104 PNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAM 170 (184)
T ss_pred CCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998753
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-36 Score=213.64 Aligned_cols=141 Identities=37% Similarity=0.671 Sum_probs=137.6
Q ss_pred CchHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCccc
Q 031986 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID 83 (149)
Q Consensus 4 ~~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~ 83 (149)
+.++|.+.+|++.+...|+.||.|.+.++|+....+.|.||.||||++|.|++.+.+..|||.+||+-.|+|.||||||.
T Consensus 9 p~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVa 88 (223)
T KOG0423|consen 9 PNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVA 88 (223)
T ss_pred hHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhcc
Q 031986 84 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMD 144 (149)
Q Consensus 84 ~~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~ 144 (149)
.+|.||++.|..+|+|+.++..||..|+++|..|++++++|++|.+++.++.++|.+.||-
T Consensus 89 aNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl 149 (223)
T KOG0423|consen 89 ANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARL 149 (223)
T ss_pred cCceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999873
No 18
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-32 Score=197.79 Aligned_cols=116 Identities=29% Similarity=0.627 Sum_probs=106.7
Q ss_pred CCCCchHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccC
Q 031986 1 MASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHP 80 (149)
Q Consensus 1 m~s~~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hp 80 (149)
||+.++.|||++||+.|.++|.++|.+.|.++|+++||.+|.||++|||+||.|+.+|.||++||++||.|++.|+- .
T Consensus 1 ma~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPN--G 78 (244)
T KOG0894|consen 1 MASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPN--G 78 (244)
T ss_pred CcchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCC--C
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999872 3
Q ss_pred cccCCCcEEecCC---CCCCCccCCHHHHHHHHHHHhhCCC
Q 031986 81 NIDKLGRICLDIL---KDKWSPALQIRTVLLSIQALLSAPN 118 (149)
Q Consensus 81 ni~~~G~ic~~~l---~~~W~p~~~i~~il~~i~~ll~~~~ 118 (149)
.+-.+.++|+++. .+.|+|++++.+||.+|.++|.+..
T Consensus 79 RFktntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~ 119 (244)
T KOG0894|consen 79 RFKTNTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDS 119 (244)
T ss_pred ceecCceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCC
Confidence 3334479999876 5899999999999999999988644
No 19
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-32 Score=185.17 Aligned_cols=118 Identities=34% Similarity=0.656 Sum_probs=110.1
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeecc-ccCccc
Q 031986 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKI-YHPNID 83 (149)
Q Consensus 5 ~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i-~hpni~ 83 (149)
.+.+||++|+.+++.+++.|+... ..||+..|.+.+.|.+||.|+|.+|.+.++||+.||++.|.|.|+.++ .|||||
T Consensus 15 ~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiY 93 (161)
T KOG0427|consen 15 IATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIY 93 (161)
T ss_pred HHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCcee
Confidence 678999999999999999999988 678999999999999999999999999999999999999999999887 899999
Q ss_pred CCCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCC-CCCcc
Q 031986 84 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPN-PDDPL 123 (149)
Q Consensus 84 ~~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~-~~~~~ 123 (149)
++|.||+++|.+.|+|++++.+|.++|.+||++.. ...|.
T Consensus 94 SNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~ 134 (161)
T KOG0427|consen 94 SNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPT 134 (161)
T ss_pred cCCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCC
Confidence 99999999999999999999999999999998743 33444
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4e-25 Score=161.84 Aligned_cols=139 Identities=23% Similarity=0.371 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCC--CCCeEEEeeccccCcccC
Q 031986 7 PRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPM--SAPKVRFLTKIYHPNIDK 84 (149)
Q Consensus 7 ~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~--~pP~v~f~~~i~hpni~~ 84 (149)
.-.|+.|+..+.+.+.+||++.|.-.|-+.|.++|++ ..+.|.||+|+|+|.+|++||. +-|+|.|.++++||+|.+
T Consensus 21 ey~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp 99 (258)
T KOG0429|consen 21 EYALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICP 99 (258)
T ss_pred HHHHHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCC
Confidence 3467889999999999999999999999999999995 6778999999999999999995 589999999999999997
Q ss_pred -CCcEEecCCCCCCCccC-CHHHHHHHHHHHhhCCCCCCc--ccHHHHHHHHHCHHHHHHHhccCc
Q 031986 85 -LGRICLDILKDKWSPAL-QIRTVLLSIQALLSAPNPDDP--LSDNIAKHWKADETEAVETGMDPV 146 (149)
Q Consensus 85 -~G~ic~~~l~~~W~p~~-~i~~il~~i~~ll~~~~~~~~--~n~~a~~~~~~~~~~f~~~~~~~v 146 (149)
++.+|+......|.... +++++|..++.+|.+|+.+.+ .|.+|+.+|++++++|.++|++||
T Consensus 100 ~skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~v 165 (258)
T KOG0429|consen 100 KSKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECV 165 (258)
T ss_pred CccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHH
Confidence 89999987776798765 699999999999999998865 499999999999999999999987
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=8.5e-24 Score=157.22 Aligned_cols=110 Identities=33% Similarity=0.677 Sum_probs=98.8
Q ss_pred CchHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCccc
Q 031986 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID 83 (149)
Q Consensus 4 ~~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~ 83 (149)
+.+.|||++|.++++ +|...+.+.|.++|+++|+++|.||.+|-|+||+|+.+|.||.+||++||.+..+|+ +..+-
T Consensus 10 npaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp--NGRFE 86 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP--NGRFE 86 (314)
T ss_pred CHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC--CCcee
Confidence 478899999999998 788888899999999999999999999999999999999999999999999999887 33444
Q ss_pred CCCcEEecCC---CCCCCccCCHHHHHHHHHHHhhC
Q 031986 84 KLGRICLDIL---KDKWSPALQIRTVLLSIQALLSA 116 (149)
Q Consensus 84 ~~G~ic~~~l---~~~W~p~~~i~~il~~i~~ll~~ 116 (149)
-+.+||+++. .+.|.|+++|.+.|..|..+|-+
T Consensus 87 ~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt 122 (314)
T KOG0428|consen 87 VNKKICLSISGYHPETWQPSWSIRTALLALIGFMPT 122 (314)
T ss_pred eCceEEEEecCCCccccCcchhHHHHHHHHHccccC
Confidence 4679999887 48999999999999999988754
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.7e-18 Score=148.51 Aligned_cols=111 Identities=32% Similarity=0.631 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeec--cccCccc
Q 031986 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK--IYHPNID 83 (149)
Q Consensus 6 ~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~--i~hpni~ 83 (149)
..|..+.|++-+..+.+.||+|...++.+....+.|.||.+|||.+|.|.|.+.||++||-+||.|...+. .++||.|
T Consensus 852 ~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly 931 (1101)
T KOG0895|consen 852 WAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLY 931 (1101)
T ss_pred HHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccc
Confidence 34566777888888899999999999999999999999999999999999999999999999999999866 5899999
Q ss_pred CCCcEEecCCC-------CCCCccCCHHHHHHHHHHHhhC
Q 031986 84 KLGRICLDILK-------DKWSPALQIRTVLLSIQALLSA 116 (149)
Q Consensus 84 ~~G~ic~~~l~-------~~W~p~~~i~~il~~i~~ll~~ 116 (149)
.+|++|+++|. +-|+|+-++.++|.+||.|...
T Consensus 932 ~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~ 971 (1101)
T KOG0895|consen 932 EDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLN 971 (1101)
T ss_pred cccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence 99999999985 5799999999999999998654
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.7e-16 Score=136.32 Aligned_cols=114 Identities=33% Similarity=0.699 Sum_probs=106.5
Q ss_pred CchHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeec---cccC
Q 031986 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK---IYHP 80 (149)
Q Consensus 4 ~~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~---i~hp 80 (149)
....+|+++|++-+.++.++|+.+.+.+..+....+.|.||.+|||++|+|.|.|.||..||..||.+.+.+. .+.|
T Consensus 281 ~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nP 360 (1101)
T KOG0895|consen 281 KNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNP 360 (1101)
T ss_pred hhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecC
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999977 5899
Q ss_pred cccCCCcEEecCCC-------CCCCcc-CCHHHHHHHHHHHhhCC
Q 031986 81 NIDKLGRICLDILK-------DKWSPA-LQIRTVLLSIQALLSAP 117 (149)
Q Consensus 81 ni~~~G~ic~~~l~-------~~W~p~-~~i~~il~~i~~ll~~~ 117 (149)
|.|.+|+||+++|. +.|+|. .++.++|.+|+.++...
T Consensus 361 NlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 361 NLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred CcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 99999999999883 679998 78999999999988764
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=7.3e-15 Score=100.43 Aligned_cols=111 Identities=22% Similarity=0.351 Sum_probs=89.9
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEE-e-cCCC--CceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccC
Q 031986 5 NLPRRIVKETQRLLSEPAPGISAS-P-AEDN--MRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHP 80 (149)
Q Consensus 5 ~~~kRl~~E~~~l~~~~~~~~~~~-~-~~~~--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hp 80 (149)
..--||.+|+.+-++...+|..-. . +++| +..|...|.||+.|+||+-+|.++|...++||..||+|+|.+++--.
T Consensus 5 Prnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~ 84 (138)
T KOG0896|consen 5 PRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMN 84 (138)
T ss_pred ccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeec
Confidence 445689999988877666665333 2 2334 45899999999999999999999999999999999999999999888
Q ss_pred cccC-CCcEEecCC--CCCCCccCCHHHHHHHHHHHhh
Q 031986 81 NIDK-LGRICLDIL--KDKWSPALQIRTVLLSIQALLS 115 (149)
Q Consensus 81 ni~~-~G~ic~~~l--~~~W~p~~~i~~il~~i~~ll~ 115 (149)
.|+. +|.+.-..+ -.+|.-.|+++.+|..++..|.
T Consensus 85 gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~ 122 (138)
T KOG0896|consen 85 GVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMM 122 (138)
T ss_pred ccccCCCccCccccchhhcccccchhhHHHHhhhHHHH
Confidence 8885 677764322 3689999999999999986544
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.85 E-value=1.5e-08 Score=70.84 Aligned_cols=67 Identities=31% Similarity=0.658 Sum_probs=60.9
Q ss_pred CCCEEEEEEECCCCCCCCCCeEEEeecc---ccCcccCCCcEEe---cCCCCCCCccCCHHHHHHHHHHHhhC
Q 031986 50 EGGVFKLELFLPEDYPMSAPKVRFLTKI---YHPNIDKLGRICL---DILKDKWSPALQIRTVLLSIQALLSA 116 (149)
Q Consensus 50 ~gg~f~~~i~fp~~YP~~pP~v~f~~~i---~hpni~~~G~ic~---~~l~~~W~p~~~i~~il~~i~~ll~~ 116 (149)
.|+.+.++|.+|++||..||.|....+. +-|||+.+|.+|+ +...+.|.|.-.+.++|.++..+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998655 6799999999999 77778999999999999999998873
No 26
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=3.7e-08 Score=65.83 Aligned_cols=73 Identities=23% Similarity=0.451 Sum_probs=56.7
Q ss_pred EEEEEECCCCCCCCCCeEEEeecccc-CcccCCCcEEecCC-CCCCCccCCHHHHHHHHHHHhhCCC--CCCcccHH
Q 031986 54 FKLELFLPEDYPMSAPKVRFLTKIYH-PNIDKLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPN--PDDPLSDN 126 (149)
Q Consensus 54 f~~~i~fp~~YP~~pP~v~f~~~i~h-pni~~~G~ic~~~l-~~~W~p~~~i~~il~~i~~ll~~~~--~~~~~n~~ 126 (149)
.-+.+.|++|||+.||.+|...++.. .-|-.+|.||+.++ .++|+.+|+++.++.+|-+++-.-. .+.+++.+
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~ 89 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKS 89 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchh
Confidence 45678899999999999998776533 23446899999999 4789999999999999999887643 33445444
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.28 E-value=2.5e-06 Score=58.67 Aligned_cols=78 Identities=27% Similarity=0.541 Sum_probs=53.6
Q ss_pred CceeEEEEECCCCCCCCCCEEE--EEEECCCCCCCCCCeEEEeecc-----ccCcccCCCcEEecCCCCCCCc-cCCHHH
Q 031986 34 MRYFNVMILGPSQSPYEGGVFK--LELFLPEDYPMSAPKVRFLTKI-----YHPNIDKLGRICLDILKDKWSP-ALQIRT 105 (149)
Q Consensus 34 ~~~w~~~i~Gp~~tpy~gg~f~--~~i~fp~~YP~~pP~v~f~~~i-----~hpni~~~G~ic~~~l~~~W~p-~~~i~~ 105 (149)
+....++|. -.|.|..|. +.|-+|.+||.+||.+...... -+.+|+.+|++.+..+. +|++ ..++.+
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~-~W~~~~s~L~~ 106 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQ-NWNPPSSNLVD 106 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHH-T--TTTS-HHH
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhc-cCCCCCCCHHH
Confidence 445555554 358888885 6677999999999999886332 24499999999888777 7876 778999
Q ss_pred HHHHHHHHhhC
Q 031986 106 VLLSIQALLSA 116 (149)
Q Consensus 106 il~~i~~ll~~ 116 (149)
++..+...|++
T Consensus 107 lv~~l~~~F~~ 117 (121)
T PF05743_consen 107 LVQELQAVFSE 117 (121)
T ss_dssp HHHHHHHCCCH
T ss_pred HHHHHHHHHhH
Confidence 99888887753
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.17 E-value=1e-06 Score=61.27 Aligned_cols=97 Identities=21% Similarity=0.251 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHhh-------CCCCCeEEEecCCCCceeEEEEECCCCCCCCC--CEEEEEEECCCCCCCCCCeEEEeec
Q 031986 6 LPRRIVKETQRLLS-------EPAPGISASPAEDNMRYFNVMILGPSQSPYEG--GVFKLELFLPEDYPMSAPKVRFLTK 76 (149)
Q Consensus 6 ~~kRl~~E~~~l~~-------~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~g--g~f~~~i~fp~~YP~~pP~v~f~~~ 76 (149)
-..||.+||..|-+ +-...+.++ .+.+=+.|.+..-= .++- -.|.+++.+|..||..||.|....-
T Consensus 25 W~~RLKEEy~aLI~Yv~~nK~~DndWF~le-sn~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeL 99 (161)
T PF08694_consen 25 WVQRLKEEYQALIKYVENNKENDNDWFRLE-SNKEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEIALPEL 99 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT---EEEE-E-TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----B-GGG
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCeEEec-cCCCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcceecccc
Confidence 36899999988754 122344555 33344566554320 0111 2466778899999999999987533
Q ss_pred c-ccCcccCCCcEEecCCC-CCC---CccCCHHHHH
Q 031986 77 I-YHPNIDKLGRICLDILK-DKW---SPALQIRTVL 107 (149)
Q Consensus 77 i-~hpni~~~G~ic~~~l~-~~W---~p~~~i~~il 107 (149)
- -..-.|.+|+||++... .-| .|.++|.+.|
T Consensus 100 dGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 100 DGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp TTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred CCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 2 23466788999998774 335 6888888765
No 29
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.00018 Score=49.54 Aligned_cols=95 Identities=22% Similarity=0.368 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCC----------EEEEEEECCCCCCCCCCeEEEeec
Q 031986 7 PRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGG----------VFKLELFLPEDYPMSAPKVRFLTK 76 (149)
Q Consensus 7 ~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~f~~~ 76 (149)
.+||.+||+.|-.. +.-..++-..|.-.-..++||-|-|. .|.+++.+|-.||..+|.+....-
T Consensus 29 vqrlkeey~sli~y------vqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpel 102 (167)
T KOG3357|consen 29 VQRLKEEYQSLIAY------VQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPEL 102 (167)
T ss_pred HHHHHHHHHHHHHH------HHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccccc
Confidence 58999999987641 11112222233333344666666663 366777789999999999875322
Q ss_pred c-ccCcccCCCcEEecCC-CCCC---CccCCHHHHH
Q 031986 77 I-YHPNIDKLGRICLDIL-KDKW---SPALQIRTVL 107 (149)
Q Consensus 77 i-~hpni~~~G~ic~~~l-~~~W---~p~~~i~~il 107 (149)
- -.--.|.+|+||+.-. ..-| .|.+++.+.+
T Consensus 103 dgktakmyrggkiclt~hfkplwarn~pkfgiaha~ 138 (167)
T KOG3357|consen 103 DGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHAM 138 (167)
T ss_pred CchhhhhhcCceEeeccccchhhhhcCcchhHHHHH
Confidence 1 1234567899998544 4456 4666766553
No 30
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.00043 Score=54.80 Aligned_cols=82 Identities=22% Similarity=0.463 Sum_probs=63.1
Q ss_pred CCceeEEEEECCCCCCCCCCEEEE--EEECCCCCCCCCCeEEEeec-----cccCcccCCCcEEecCCCCCCC-ccCCHH
Q 031986 33 NMRYFNVMILGPSQSPYEGGVFKL--ELFLPEDYPMSAPKVRFLTK-----IYHPNIDKLGRICLDILKDKWS-PALQIR 104 (149)
Q Consensus 33 ~~~~w~~~i~Gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~~~-----i~hpni~~~G~ic~~~l~~~W~-p~~~i~ 104 (149)
+++...++|. ++|.|.+|.+ .|=+.+.||..||.+..... -.|-||+.+|.|.+..|. +|. |+.++.
T Consensus 51 ~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh-~W~~pssdLv 125 (365)
T KOG2391|consen 51 LLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH-NWDPPSSDLV 125 (365)
T ss_pred chhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc-cCCCccchHH
Confidence 3444455554 5788888875 45589999999999976522 148999999999999998 676 677899
Q ss_pred HHHHHHHHHhhCCCC
Q 031986 105 TVLLSIQALLSAPNP 119 (149)
Q Consensus 105 ~il~~i~~ll~~~~~ 119 (149)
.++..+.+.|.++.+
T Consensus 126 ~Liq~l~a~f~~~pP 140 (365)
T KOG2391|consen 126 GLIQELIAAFSEDPP 140 (365)
T ss_pred HHHHHHHHHhcCCCc
Confidence 999999988887543
No 31
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.70 E-value=0.041 Score=36.05 Aligned_cols=27 Identities=33% Similarity=0.600 Sum_probs=22.6
Q ss_pred CCCEEEEEEECCCCCCCCCCeEEEeec
Q 031986 50 EGGVFKLELFLPEDYPMSAPKVRFLTK 76 (149)
Q Consensus 50 ~gg~f~~~i~fp~~YP~~pP~v~f~~~ 76 (149)
..-.+.+.+.||++||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345688999999999999999987653
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.55 E-value=0.0098 Score=39.36 Aligned_cols=69 Identities=19% Similarity=0.171 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEEC--CCCCCCCCCEEEEEEECCCCCCCCCCeEEEeec
Q 031986 7 PRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILG--PSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 76 (149)
Q Consensus 7 ~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~G--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~ 76 (149)
..+...|+..|+.-=++.+ ......+...+.+.+.+ ...+.-....+.+.+.||++||..+|.|.+.+.
T Consensus 3 ~e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 3 EEQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp HHHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 3567788888876322222 22233444456666621 234445566899999999999999999987765
No 33
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.46 E-value=0.047 Score=37.51 Aligned_cols=92 Identities=18% Similarity=0.367 Sum_probs=59.0
Q ss_pred CCeEEEecCCCCceeEEEEEC--CCCCCCCCCEEEEEEECCCCCCCCCCeEEEeecccc-------Cccc-----CCCcE
Q 031986 23 PGISASPAEDNMRYFNVMILG--PSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH-------PNID-----KLGRI 88 (149)
Q Consensus 23 ~~~~~~~~~~~~~~w~~~i~G--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~h-------pni~-----~~G~i 88 (149)
.|+..+...+.-..|.+ |.| .+.+.|.+..-.+-|.+|..||..+|..-+..+-.. |+-. -.|+.
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~iP~~~~~~~~~~G~~ 90 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLADGGPIPNAAEVTQTFDGRT 90 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEccCCCcCCchhcchhhcCCee
Confidence 36666665555555655 555 566779999999999999999999887665544211 1100 01332
Q ss_pred E--ecCCCCCCCccC-CHHHHHHHHHHHhh
Q 031986 89 C--LDILKDKWSPAL-QIRTVLLSIQALLS 115 (149)
Q Consensus 89 c--~~~l~~~W~p~~-~i~~il~~i~~ll~ 115 (149)
. .+.....|.|.. ++.+.|..|...|.
T Consensus 91 wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 91 WQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred eeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 2 122235699987 58888888877653
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.60 E-value=0.023 Score=40.99 Aligned_cols=61 Identities=26% Similarity=0.424 Sum_probs=48.4
Q ss_pred EEEECCCCCCCCCCeEEEeeccc---cCcccCC-----CcEEecCCC-CCCCccCCHHHHHHHHHHHhhC
Q 031986 56 LELFLPEDYPMSAPKVRFLTKIY---HPNIDKL-----GRICLDILK-DKWSPALQIRTVLLSIQALLSA 116 (149)
Q Consensus 56 ~~i~fp~~YP~~pP~v~f~~~i~---hpni~~~-----G~ic~~~l~-~~W~p~~~i~~il~~i~~ll~~ 116 (149)
+.|.|+.+||..+|.|.+.-..| +||++.. ..+|+.--. ..|.+..+++.+|..|..-|..
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 56899999999999887765543 5888765 789985443 5799999999999999887763
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=92.46 E-value=0.22 Score=39.26 Aligned_cols=86 Identities=22% Similarity=0.391 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcccCC
Q 031986 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 85 (149)
Q Consensus 6 ~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~~~ 85 (149)
.-++|.+|+.++..+.. +.+. .++++....+.+.. ++-...++|.++.+||.++|.+..--++
T Consensus 100 ~ys~ll~EIe~IGW~kl--~~i~-~d~~ls~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~~~P~-------- 162 (291)
T PF09765_consen 100 YYSNLLKEIEAIGWDKL--VQIQ-FDDDLSTIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSLDLPI-------- 162 (291)
T ss_dssp GC-CHHHHHHHHHCGCC--EEEE-E-CCCSEEEEEEET------TCEEEEEEEETTTTTTTSEEEECS-TTS--------
T ss_pred HHHHHHHHHHHhccccc--eEEe-cCCCccEEEEEEEc------CCceEEEEEEECCCCCCCCceeeCCCCc--------
Confidence 45678888888876533 2332 35688888888882 2356789999999999999965322211
Q ss_pred CcEEecCCCCCCCc-cCCHHHHHHHHHHHh
Q 031986 86 GRICLDILKDKWSP-ALQIRTVLLSIQALL 114 (149)
Q Consensus 86 G~ic~~~l~~~W~p-~~~i~~il~~i~~ll 114 (149)
.+...|.+ ..++.+++...+..+
T Consensus 163 ------~~~~~w~~~~ssL~~v~~qF~~~l 186 (291)
T PF09765_consen 163 ------PFSLSWSPSQSSLKDVVQQFQEAL 186 (291)
T ss_dssp -------HHHHHHCHT-SHHHHHHHHHHHH
T ss_pred ------chhhhhcccccCHHHHHHHHHHHH
Confidence 11236888 667877766555444
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=89.29 E-value=1.6 Score=32.82 Aligned_cols=63 Identities=24% Similarity=0.305 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhCCCCCe-EEEecCCCCceeEEEEECCCCCCCCC--CEEEEEEECCCCCCCCCCeEEEe
Q 031986 9 RIVKETQRLLSEPAPGI-SASPAEDNMRYFNVMILGPSQSPYEG--GVFKLELFLPEDYPMSAPKVRFL 74 (149)
Q Consensus 9 Rl~~E~~~l~~~~~~~~-~~~~~~~~~~~w~~~i~Gp~~tpy~g--g~f~~~i~fp~~YP~~pP~v~f~ 74 (149)
-..+|+..|+.--+.-+ .+. +.+...+.+.|. ...+-++. +.+.+.+.++++||..+|.+.+.
T Consensus 6 eQe~E~EaLeSIY~de~~~i~--~~~~~~f~v~iq-~e~~e~d~~~~~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 6 EQEEELEALESIYPDEFKHIN--SEDPPIFEVTIQ-YEEGENDEPKGSFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred HHHHHHHHHHHhccchhhhhh--ccCCccceeeee-cccccCCCccccEEEEEEccCCCCCCCcceecc
Confidence 34566667666433222 222 223333666665 22222221 27889999999999999999443
No 37
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.35 E-value=3.6 Score=36.65 Aligned_cols=70 Identities=17% Similarity=0.311 Sum_probs=47.0
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCE-EEEEEECCCCCCCC-CCeEEEeec
Q 031986 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGV-FKLELFLPEDYPMS-APKVRFLTK 76 (149)
Q Consensus 5 ~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~-f~~~i~fp~~YP~~-pP~v~f~~~ 76 (149)
...+-|.+|+..|-.. .+.+.++-.+-.-..-.+++-||-..- .|-+ .++.|.||.+||.+ +|.++|..+
T Consensus 420 ~~pQnLgeE~S~Ig~k-~~nV~fEkidva~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 420 TLPQNLGEEFSLIGVK-IRNVNFEKIDVADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhhhHHhHHhHhhcc-ccccceEeeccccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 3456677787776653 334555544444566777888765544 3433 47889999999996 789999754
No 38
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=79.08 E-value=2.9 Score=30.37 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=25.5
Q ss_pred eeccccC---cccCCCcEEecCCCCCCCccCCHHHHHHHHHH-HhhCCC
Q 031986 74 LTKIYHP---NIDKLGRICLDILKDKWSPALQIRTVLLSIQA-LLSAPN 118 (149)
Q Consensus 74 ~~~i~hp---ni~~~G~ic~~~l~~~W~p~~~i~~il~~i~~-ll~~~~ 118 (149)
.|++||. ||+.+|+||+.... .|.......+..+.. ++.++.
T Consensus 89 ~T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~f 134 (175)
T PF14460_consen 89 DTPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFNSPF 134 (175)
T ss_pred CCeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCCc
Confidence 3556773 99999999996532 244444444566654 444443
No 39
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.15 E-value=5.5 Score=23.41 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=21.6
Q ss_pred CCCCchHHHHHHHHHHHhhCCCCCeE
Q 031986 1 MASGNLPRRIVKETQRLLSEPAPGIS 26 (149)
Q Consensus 1 m~s~~~~kRl~~E~~~l~~~~~~~~~ 26 (149)
|+|+.+++-+.+|+++.+++.+.+..
T Consensus 28 mSsGEAIa~VA~elRe~hk~~~~~~~ 53 (60)
T COG3140 28 MSSGEAIALVAQELRENHKGENRIVA 53 (60)
T ss_pred ccchhHHHHHHHHHHHHhcccccccc
Confidence 78999999999999999987655543
No 40
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=71.43 E-value=8 Score=29.50 Aligned_cols=38 Identities=21% Similarity=0.380 Sum_probs=25.0
Q ss_pred eccccC---cccCCCcEEecCCCCCCCccC-CHHHHHHHHHHHhhC
Q 031986 75 TKIYHP---NIDKLGRICLDILKDKWSPAL-QIRTVLLSIQALLSA 116 (149)
Q Consensus 75 ~~i~hp---ni~~~G~ic~~~l~~~W~p~~-~i~~il~~i~~ll~~ 116 (149)
|++||. ||+++|+||+.... .|.. ++.+ +......|.+
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~ 172 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFS 172 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhC
Confidence 446674 99999999986553 4433 4556 6777665544
No 41
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=69.95 E-value=15 Score=29.56 Aligned_cols=66 Identities=24% Similarity=0.517 Sum_probs=44.4
Q ss_pred CceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEe-eccccCcccCCCcEEecCCCCCCCccC--CHHHHHHHH
Q 031986 34 MRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFL-TKIYHPNIDKLGRICLDILKDKWSPAL--QIRTVLLSI 110 (149)
Q Consensus 34 ~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~-~~i~hpni~~~G~ic~~~l~~~W~p~~--~i~~il~~i 110 (149)
...+++.| ||.|...+-+|.|...||..||-+.|. ..-|+|-... +..+ .+|++.- ++..++..+
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s~-----l~~L-~~Wd~~dp~~Ll~li~EL 120 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPSK-----LPSL-VNWDPSDPNCLLNLISEL 120 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChhh-----cchh-hcCCCCCchHHHHHHHHH
Confidence 34566666 599999999999999999999999996 3347774321 1122 3787654 355555444
Q ss_pred H
Q 031986 111 Q 111 (149)
Q Consensus 111 ~ 111 (149)
.
T Consensus 121 ~ 121 (333)
T PF06113_consen 121 R 121 (333)
T ss_pred H
Confidence 3
No 42
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=58.10 E-value=18 Score=25.33 Aligned_cols=26 Identities=23% Similarity=0.608 Sum_probs=22.9
Q ss_pred CCCEEEEEEECCCCCC-CCCCeEEEee
Q 031986 50 EGGVFKLELFLPEDYP-MSAPKVRFLT 75 (149)
Q Consensus 50 ~gg~f~~~i~fp~~YP-~~pP~v~f~~ 75 (149)
+.|.|.|.-.+|-.|| ..||.|.|.-
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 4589999999999999 9999998863
No 43
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=54.47 E-value=22 Score=26.24 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=23.0
Q ss_pred CCCEEEEEEECCCCCCCCCCeEEEee
Q 031986 50 EGGVFKLELFLPEDYPMSAPKVRFLT 75 (149)
Q Consensus 50 ~gg~f~~~i~fp~~YP~~pP~v~f~~ 75 (149)
+.|.|.|+=.+|--||..+|.|.|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 45889999999999999999998863
No 44
>smart00340 HALZ homeobox associated leucin zipper.
Probab=52.26 E-value=13 Score=20.56 Aligned_cols=14 Identities=43% Similarity=0.472 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhhC
Q 031986 7 PRRIVKETQRLLSE 20 (149)
Q Consensus 7 ~kRl~~E~~~l~~~ 20 (149)
-+||++|+.+|...
T Consensus 21 NrRL~ke~~eLral 34 (44)
T smart00340 21 NRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHhc
Confidence 48999999999864
No 45
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=51.27 E-value=38 Score=27.34 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=22.0
Q ss_pred CCEEEEEEECCCCCCCCCCeEEEeec
Q 031986 51 GGVFKLELFLPEDYPMSAPKVRFLTK 76 (149)
Q Consensus 51 gg~f~~~i~fp~~YP~~pP~v~f~~~ 76 (149)
+-.|-+.|.+|..||...|.++|.+-
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS~ 330 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQSV 330 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEee
Confidence 34577889999999999999999873
No 46
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=46.34 E-value=36 Score=24.33 Aligned_cols=26 Identities=23% Similarity=0.584 Sum_probs=22.5
Q ss_pred CCCEEEEEEECCCCCC-----CCCCeEEEee
Q 031986 50 EGGVFKLELFLPEDYP-----MSAPKVRFLT 75 (149)
Q Consensus 50 ~gg~f~~~i~fp~~YP-----~~pP~v~f~~ 75 (149)
+.|.|.|+-.+|--|| ..||.|.|.-
T Consensus 71 ~~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 71 ADGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 3488999999999999 8999998864
No 47
>PRK11700 hypothetical protein; Provisional
Probab=44.44 E-value=1.3e+02 Score=22.30 Aligned_cols=99 Identities=18% Similarity=0.275 Sum_probs=57.2
Q ss_pred chHHHHHHHHHHHh----hCCCCCe--EE-Ee-cCCCCceeEEEEE---CCCCCCCC-CCEEEEEEECCC----------
Q 031986 5 NLPRRIVKETQRLL----SEPAPGI--SA-SP-AEDNMRYFNVMIL---GPSQSPYE-GGVFKLELFLPE---------- 62 (149)
Q Consensus 5 ~~~kRl~~E~~~l~----~~~~~~~--~~-~~-~~~~~~~w~~~i~---Gp~~tpy~-gg~f~~~i~fp~---------- 62 (149)
...+|..+.+.+.- .+...|= .+ .. .+=....|.+.+. =|.+.-|- -|+=|+++++|.
T Consensus 51 ~tAe~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~k~Yp~eGWEHIElVlp~~~~t~~~~~~ 130 (187)
T PRK11700 51 ETAERWRQGFLQCGELLSENIINGRPICLFELDQPLQVGHWSIDCVELPYPGEKRYPHEGWEHIELVLPGDPETLDARAL 130 (187)
T ss_pred HHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCCCCCCCCCceEEEEEecCCcchHHHHHH
Confidence 45566666665433 2334442 22 22 1224456776654 13333332 367889999883
Q ss_pred ----CCCCCCCeEEEe--ec------cccCccc-CCCcEEecCCCCCCCccCCHHHHHHH
Q 031986 63 ----DYPMSAPKVRFL--TK------IYHPNID-KLGRICLDILKDKWSPALQIRTVLLS 109 (149)
Q Consensus 63 ----~YP~~pP~v~f~--~~------i~hpni~-~~G~ic~~~l~~~W~p~~~i~~il~~ 109 (149)
+.|..++-|++. +| .-+|-|. +.|.+|+.+.+ +++.+|+.+
T Consensus 131 all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~~~vcIK~HP------~slk~IV~S 184 (187)
T PRK11700 131 ALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTDGGICIKFHP------HSIKEIVAS 184 (187)
T ss_pred HhccccccccCCcEEEecCCCccCccCCCCcEEEeeCCEEEEEcC------ccHHHHHHh
Confidence 345556655554 33 4678777 58999998877 677777653
No 48
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=44.36 E-value=25 Score=26.42 Aligned_cols=55 Identities=29% Similarity=0.425 Sum_probs=42.9
Q ss_pred CCCCeEEEeeccccCcccC--CCcEEecCCCCCC--CccCCHHHHHHHHHHHhhCCCCC
Q 031986 66 MSAPKVRFLTKIYHPNIDK--LGRICLDILKDKW--SPALQIRTVLLSIQALLSAPNPD 120 (149)
Q Consensus 66 ~~pP~v~f~~~i~hpni~~--~G~ic~~~l~~~W--~p~~~i~~il~~i~~ll~~~~~~ 120 (149)
..||.|-|-.+.|...|+- .|-|-.++...+| .|+-.+.+-|..|..++-.|+.+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed 225 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTED 225 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccc
Confidence 4689999999999999983 5655556666666 58888998898888888887744
No 49
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=42.35 E-value=7.7 Score=28.69 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=24.8
Q ss_pred CCcEEecCCCCCCCccCCHHHHHHHHHHHhh
Q 031986 85 LGRICLDILKDKWSPALQIRTVLLSIQALLS 115 (149)
Q Consensus 85 ~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~ 115 (149)
.+..|++++...|+|.+|.++.+.-++..+.
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~ 165 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCVL 165 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHHH
Confidence 4679999999999999999888766655443
No 50
>PRK05114 hypothetical protein; Provisional
Probab=36.58 E-value=36 Score=20.20 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=17.5
Q ss_pred CCCCchHHHHHHHHHHHhhCC
Q 031986 1 MASGNLPRRIVKETQRLLSEP 21 (149)
Q Consensus 1 m~s~~~~kRl~~E~~~l~~~~ 21 (149)
|+|+.+++-+.+|+++-.+..
T Consensus 28 mSsgEAI~~VA~eiRe~~~~~ 48 (59)
T PRK05114 28 MSSGEAIALVAEELRANHQGE 48 (59)
T ss_pred ccHHHHHHHHHHHHHHHHhcc
Confidence 788999999999999866643
No 51
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=34.71 E-value=1.2e+02 Score=19.18 Aligned_cols=40 Identities=15% Similarity=0.166 Sum_probs=27.5
Q ss_pred ceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeec
Q 031986 35 RYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 76 (149)
Q Consensus 35 ~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~ 76 (149)
..|.+-+.|+.+..-..-+=++...+.++|+. |...+..+
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~p 41 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKP 41 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSST
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCC
Confidence 47999999988765555667788889998886 66666555
No 52
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=34.45 E-value=54 Score=26.25 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=22.0
Q ss_pred CEEEEEEECCCCCCCCCCeEEEeec
Q 031986 52 GVFKLELFLPEDYPMSAPKVRFLTK 76 (149)
Q Consensus 52 g~f~~~i~fp~~YP~~pP~v~f~~~ 76 (149)
-.+.+.+..++.||...|+|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 3577889999999999999999876
No 53
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=33.50 E-value=83 Score=23.23 Aligned_cols=56 Identities=21% Similarity=0.378 Sum_probs=41.2
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeE
Q 031986 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKV 71 (149)
Q Consensus 5 ~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v 71 (149)
-.++|+++|++.+.++....++..|.-+..-.+.+.+.--++ ...|.++-.+-|.+
T Consensus 119 k~~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyTdkD-----------~~vP~~W~eS~~~~ 174 (203)
T KOG3285|consen 119 KDLKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYTDKD-----------TEVPEKWDESGPKL 174 (203)
T ss_pred hHHHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEeCCC-----------ccCCcchhcCCCeE
Confidence 457999999999999988888888877777777777764333 35666666666654
No 54
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=33.49 E-value=69 Score=23.73 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=21.1
Q ss_pred CCCEEEEEEECCCCCCC-----CCCeEEEe
Q 031986 50 EGGVFKLELFLPEDYPM-----SAPKVRFL 74 (149)
Q Consensus 50 ~gg~f~~~i~fp~~YP~-----~pP~v~f~ 74 (149)
+.|.|.|+-..|-.||. .||.|.|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 34889999999999998 88888775
No 55
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=33.28 E-value=14 Score=33.27 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=0.0
Q ss_pred CEEEEEEECCCCCCCCCCeEEEeecc
Q 031986 52 GVFKLELFLPEDYPMSAPKVRFLTKI 77 (149)
Q Consensus 52 g~f~~~i~fp~~YP~~pP~v~f~~~i 77 (149)
.+=-++|.+|.|||..+|.+.+...-
T Consensus 714 ~VPPl~l~vP~~YP~~sp~~~~~~~~ 739 (799)
T PF09606_consen 714 SVPPLRLTVPADYPRQSPQCSVDRDE 739 (799)
T ss_dssp --------------------------
T ss_pred CCCCeeEeCCCCCCccCCcCcccHHH
Confidence 34558899999999999998775443
No 56
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=32.10 E-value=45 Score=19.80 Aligned_cols=18 Identities=11% Similarity=0.409 Sum_probs=11.7
Q ss_pred CCCccCCHHHHHHHHHHH
Q 031986 96 KWSPALQIRTVLLSIQAL 113 (149)
Q Consensus 96 ~W~p~~~i~~il~~i~~l 113 (149)
+|.|.++|++++......
T Consensus 37 gW~p~~~L~~~i~~~w~W 54 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNW 54 (62)
T ss_dssp ----SSSHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHH
Confidence 799999999999877653
No 57
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=31.63 E-value=71 Score=18.90 Aligned_cols=22 Identities=5% Similarity=-0.006 Sum_probs=19.0
Q ss_pred ccHHHHHHHHHCHHHHHHHhcc
Q 031986 123 LSDNIAKHWKADETEAVETGMD 144 (149)
Q Consensus 123 ~n~~a~~~~~~~~~~f~~~~~~ 144 (149)
-|++.+++..+|+++|.+...+
T Consensus 34 ~nP~l~q~I~~n~e~Fl~ll~~ 55 (59)
T PF09280_consen 34 SNPQLLQLIQQNPEEFLRLLNE 55 (59)
T ss_dssp CSHHHHHHHHHTHHHHHHHHHS
T ss_pred cCHHHHHHHHHCHHHHHHHHcC
Confidence 4889999999999999987644
No 58
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=31.60 E-value=1.4e+02 Score=19.31 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=21.3
Q ss_pred CCCCEEEEEEECCCCCCCCCCeEEEeec
Q 031986 49 YEGGVFKLELFLPEDYPMSAPKVRFLTK 76 (149)
Q Consensus 49 y~gg~f~~~i~fp~~YP~~pP~v~f~~~ 76 (149)
-+|..+.|.-.-|..|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 46777888888899999 599988865
No 59
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=30.98 E-value=82 Score=23.15 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=19.9
Q ss_pred CCEEEEEEECCCCCCC-----CCCeEEEe
Q 031986 51 GGVFKLELFLPEDYPM-----SAPKVRFL 74 (149)
Q Consensus 51 gg~f~~~i~fp~~YP~-----~pP~v~f~ 74 (149)
.|.|.|+-.+|--||. .||.|.|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3889999999999995 78877664
No 60
>PLN03213 repressor of silencing 3; Provisional
Probab=27.85 E-value=2.1e+02 Score=24.82 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=35.1
Q ss_pred CchHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEE---EEECCCCCCCCC---CEEEEE-EECCCCCCCC
Q 031986 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNV---MILGPSQSPYEG---GVFKLE-LFLPEDYPMS 67 (149)
Q Consensus 4 ~~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~---~i~Gp~~tpy~g---g~f~~~-i~fp~~YP~~ 67 (149)
...+.||.+|.++.......-+.+.-..-+-...++ .+.-.+.-||.| ..|.|+ |.+|+.||..
T Consensus 87 P~YLeRLkrEReea~s~~~~~~kl~k~~~e~~qLnifFPrLrKvKslPfsGTGKHkYSFr~ieVp~slP~H 157 (759)
T PLN03213 87 EHYLARLKREWEAASSTSDNTIKAPSDSPPATHLNIFFPRLRKVKAMPLSGTGKHKYSFQRVPLSSSLPKS 157 (759)
T ss_pred HHHHHHHHHHHHHhhccccccccccccCCccceeeEeccccccccccccCCCccceeeeeeccCCCCCCcc
Confidence 456789999998875332222222111112222222 222245567777 456665 8899889863
No 61
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=27.13 E-value=65 Score=28.02 Aligned_cols=29 Identities=38% Similarity=0.819 Sum_probs=24.3
Q ss_pred CCCCCCEEEEEEECCCCCCCC---CCeEEEeec
Q 031986 47 SPYEGGVFKLELFLPEDYPMS---APKVRFLTK 76 (149)
Q Consensus 47 tpy~gg~f~~~i~fp~~YP~~---pP~v~f~~~ 76 (149)
+||.=|.|.+ +.+|++||+. -|-++|.|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4788888887 5689999984 799999988
No 62
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=26.84 E-value=1.2e+02 Score=25.38 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=12.7
Q ss_pred CEEEEEEECCCCCCCC
Q 031986 52 GVFKLELFLPEDYPMS 67 (149)
Q Consensus 52 g~f~~~i~fp~~YP~~ 67 (149)
-...+.++||.+|+..
T Consensus 209 e~k~i~vtFP~dy~a~ 224 (441)
T COG0544 209 EEKDIKVTFPEDYHAE 224 (441)
T ss_pred CeeEEEEEcccccchh
Confidence 3455889999999975
No 63
>PF00718 Polyoma_coat: Polyomavirus coat protein This family is a subset of the SCOP family; InterPro: IPR000662 This entry represents the major capsid protein VP1 (viral protein 1) from Polyomaviruses, such as Murine polyomavirus (strain P16 small-plaque) (MPyV) []. Polyomaviruses are dsDNA viruses with no RNA stage in their life cycle. The virus capsid is composed of 72 icosahedral units, each of which is composed of five copies of VP1. The virus attaches to the cell surface by recognition of oligosaccharides terminating in alpha(2,3)-linked sialic acid. The capsid protein VP1 forms a pentamer. The complete capsid is composed of 72 VP1 pentamers, with a minor capsid protein, VP2 or VP3, inserted into the centre of each pentamer like a hairpin. This structure restricts the exposure of internal proteins during viral entry. Polyomavirus coat assembly is rigorously controlled by chaperone-mediated assembly. During viral infection, the heat shock chaperone hsc70 binds VP1 and co-localises it in the nucleus, thereby regulating capsid assembly [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 3NXG_C 3NXD_D 1CN3_C 1SID_D 1VPS_B 1SIE_A 1VPN_A 3S7V_F 3S7X_A 3BWQ_C ....
Probab=26.38 E-value=1.6e+02 Score=23.35 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=20.2
Q ss_pred CCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcccCCC--cEEe
Q 031986 48 PYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLG--RICL 90 (149)
Q Consensus 48 py~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~~~G--~ic~ 90 (149)
--|...|..+++=.. ..||.+.|....--+.+|++| -+|.
T Consensus 193 kNENtRYFG~~tGG~---~TPPVl~ftNt~TTvLLDENGVGpLCk 234 (297)
T PF00718_consen 193 KNENTRYFGSYTGGA---NTPPVLQFTNTVTTVLLDENGVGPLCK 234 (297)
T ss_dssp SSTTEEEEEEEE-SS---S---EEEEESSEEEE---TTS--EEEC
T ss_pred cCcCceeeEeecCCC---CCCCeEEeccceeEEEEccCCcccccc
Confidence 344444444444332 248999999888888888764 4673
No 64
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=25.70 E-value=1.2e+02 Score=21.08 Aligned_cols=21 Identities=19% Similarity=0.418 Sum_probs=16.8
Q ss_pred cCCCCceeEEEEECCCCCCCC
Q 031986 30 AEDNMRYFNVMILGPSQSPYE 50 (149)
Q Consensus 30 ~~~~~~~w~~~i~Gp~~tpy~ 50 (149)
.+.|...|.+++.|++|++..
T Consensus 43 qPGd~~~ytVtV~G~dGs~~~ 63 (139)
T PF04881_consen 43 QPGDPEWYTVTVQGPDGSIRK 63 (139)
T ss_pred cCCCCcceEEEEECCCCccee
Confidence 467788899999999888654
No 65
>PHA02614 Major capsid protein VP1; Provisional
Probab=24.28 E-value=65 Score=26.16 Aligned_cols=44 Identities=18% Similarity=0.214 Sum_probs=27.2
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcccCCC--cEEe
Q 031986 44 PSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLG--RICL 90 (149)
Q Consensus 44 p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~~~G--~ic~ 90 (149)
|+-+--|+..|..+++=.. ..||.+.|....--+.+|++| -+|.
T Consensus 207 PDPskNENtRYFG~~tGG~---~TPPVl~ftNt~TTvLLDENGVGpLCk 252 (363)
T PHA02614 207 PDPSKNENTRYFGTYTGGA---NTPPVLQFTNTSTTVLLDENGVGPLCK 252 (363)
T ss_pred CCCCcCcCceeeEeecCCC---CCCCeEEecCcceEEEEcCCCcccCcc
Confidence 4444444444444443332 358999999888888888764 4663
No 66
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=24.24 E-value=78 Score=21.02 Aligned_cols=19 Identities=32% Similarity=0.674 Sum_probs=16.1
Q ss_pred eeEEEEECCCCCCCCCCEEEE
Q 031986 36 YFNVMILGPSQSPYEGGVFKL 56 (149)
Q Consensus 36 ~w~~~i~Gp~~tpy~gg~f~~ 56 (149)
.|.+.|.| +..|+|-.|.|
T Consensus 2 kWkC~iCg--~~I~~gqlFTF 20 (101)
T PF09943_consen 2 KWKCYICG--KPIYEGQLFTF 20 (101)
T ss_pred ceEEEecC--CeeeecceEEE
Confidence 69999997 66899999876
No 67
>COG3876 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.73 E-value=89 Score=25.38 Aligned_cols=81 Identities=16% Similarity=0.204 Sum_probs=50.9
Q ss_pred CCCeEEEeeccccCcccC-CCcEEecCC-----CCCCCccCC---HHHHHHHHH-----HHhhCCCCC------------
Q 031986 67 SAPKVRFLTKIYHPNIDK-LGRICLDIL-----KDKWSPALQ---IRTVLLSIQ-----ALLSAPNPD------------ 120 (149)
Q Consensus 67 ~pP~v~f~~~i~hpni~~-~G~ic~~~l-----~~~W~p~~~---i~~il~~i~-----~ll~~~~~~------------ 120 (149)
..|-|+|..-.|.|-+.. .|.+|...+ +....|..| +..+|..++ ..+.+.+.-
T Consensus 295 ~LpGV~Frp~~f~P~FsK~~gelc~GVql~v~D~k~f~pv~Tgl~i~~vik~lyp~~feft~~~~~ri~~r~d~l~gn~~ 374 (409)
T COG3876 295 GLPGVTFRPFSFEPFFSKYKGELCSGVQLVVQDPKIFYPVETGLTIWGVIKDLYPKDFEFTLKSIDRIPARFDLLGGNEF 374 (409)
T ss_pred CCCCeEEeeeecccchhhccceeecceEEEEeccccceeeeccceehhhhhhhChHHHHHHHhhcccCccccceeccchH
Confidence 457889988889999997 799998765 244666544 555554332 122121111
Q ss_pred -------CcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 121 -------DPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 121 -------~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
...-.....++++.+++|.+.-+++.+
T Consensus 375 lr~~~~~g~~v~~i~~~~~~~~~~F~k~r~kylL 408 (409)
T COG3876 375 LRIKIEEGYIVWPIRRLCKEEREQFEKLRKKYLL 408 (409)
T ss_pred HhhHHhcCcchHHHHHHHHHHHHHHHHHhhcccc
Confidence 111334567788899999988777764
No 68
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=23.40 E-value=3.2e+02 Score=20.55 Aligned_cols=24 Identities=13% Similarity=0.091 Sum_probs=15.2
Q ss_pred CchHHHHHHHHHHHhh---CCCCCeEE
Q 031986 4 GNLPRRIVKETQRLLS---EPAPGISA 27 (149)
Q Consensus 4 ~~~~kRl~~E~~~l~~---~~~~~~~~ 27 (149)
.++..||.+.++++++ ..+.|+.+
T Consensus 8 ~s~~eR~~e~~~~~k~~L~~a~~GW~~ 34 (235)
T PF14135_consen 8 KSPAERINEALAEYKKILTSAPNGWKL 34 (235)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 3567888888777775 34445443
No 69
>KOG4064 consensus Cysteine dioxygenase CDO1 [Amino acid transport and metabolism]
Probab=22.59 E-value=1.6e+02 Score=21.17 Aligned_cols=47 Identities=6% Similarity=0.142 Sum_probs=28.6
Q ss_pred CCccC-CHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhc
Q 031986 97 WSPAL-QIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGM 143 (149)
Q Consensus 97 W~p~~-~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~ 143 (149)
..|.+ ++.+++..|..+|..--.+-..-...-..|++|+.++.+.|+
T Consensus 7 ~~p~~~sl~dLv~~lh~~F~~~~vnveeV~~lM~sYkSnp~EWr~yAk 54 (196)
T KOG4064|consen 7 LKPRMISLVDLVVQLHEIFQQKLVNVEEVMKLMASYKSNPNEWRRYAK 54 (196)
T ss_pred cCchhhhHHHHHHHHHHHHHhcccCHHHHHHHHHHhhcCHHHHHHHHh
Confidence 34444 577888888777764332211112233567889999988876
No 70
>COG2847 Copper(I)-binding protein [Inorganic ion transport and metabolism]
Probab=22.39 E-value=1.5e+02 Score=21.08 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=24.8
Q ss_pred eeEEEEECCCCCCCCCCEEEEEEECCCC
Q 031986 36 YFNVMILGPSQSPYEGGVFKLELFLPED 63 (149)
Q Consensus 36 ~w~~~i~Gp~~tpy~gg~f~~~i~fp~~ 63 (149)
-+|+.+.|++...-+|..+.+++.|-..
T Consensus 104 gyHvMlm~lK~pl~eGd~v~vtL~f~~~ 131 (151)
T COG2847 104 GYHVMLMGLKKPLKEGDKVPVTLKFEKA 131 (151)
T ss_pred CEEEEEeccCCCccCCCEEEEEEEEecC
Confidence 4789999999999999999999998654
No 71
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=21.91 E-value=1.8e+02 Score=23.49 Aligned_cols=38 Identities=26% Similarity=0.515 Sum_probs=27.3
Q ss_pred eeEEEEECCCCC-CCCCCEEEEEEE---CCCCCCCCCCeEEEe
Q 031986 36 YFNVMILGPSQS-PYEGGVFKLELF---LPEDYPMSAPKVRFL 74 (149)
Q Consensus 36 ~w~~~i~Gp~~t-py~gg~f~~~i~---fp~~YP~~pP~v~f~ 74 (149)
+|...|.|-.++ -|++|.+++++. |- +--...|+|||-
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFk-n~~qR~PriRfG 239 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFK-NLYQRGPRIRFG 239 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEeccccc-cccccCCceEee
Confidence 688999996665 788999988776 32 223456799985
No 72
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=21.70 E-value=71 Score=19.05 Aligned_cols=13 Identities=31% Similarity=0.294 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhh
Q 031986 7 PRRIVKETQRLLS 19 (149)
Q Consensus 7 ~kRl~~E~~~l~~ 19 (149)
.+||.+|+.++--
T Consensus 36 r~rL~kEL~d~D~ 48 (59)
T PF12065_consen 36 RQRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHHccc
Confidence 4688888877653
No 73
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=21.02 E-value=1.5e+02 Score=23.43 Aligned_cols=24 Identities=21% Similarity=0.520 Sum_probs=20.4
Q ss_pred CCEEEEEEECCCCCC------------------CCCCeEEEe
Q 031986 51 GGVFKLELFLPEDYP------------------MSAPKVRFL 74 (149)
Q Consensus 51 gg~f~~~i~fp~~YP------------------~~pP~v~f~ 74 (149)
.|.|.|+=..|.-|| ..||.|.|.
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 488999999999997 578888775
No 74
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=20.58 E-value=3e+02 Score=21.44 Aligned_cols=47 Identities=23% Similarity=0.380 Sum_probs=30.7
Q ss_pred CCceeEEEEECCCCCCCCCCE----EEEEEECC-----CCCCCCCCeEEEeeccccC
Q 031986 33 NMRYFNVMILGPSQSPYEGGV----FKLELFLP-----EDYPMSAPKVRFLTKIYHP 80 (149)
Q Consensus 33 ~~~~w~~~i~Gp~~tpy~gg~----f~~~i~fp-----~~YP~~pP~v~f~~~i~hp 80 (149)
|..-|.+... ..+|.-..|+ |+.++++. -|-||++|+|..+++-|..
T Consensus 101 Dp~PWkl~Yr-V~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft~ 156 (276)
T PF00845_consen 101 DPIPWKLYYR-VEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFTE 156 (276)
T ss_pred CCCCeEEEEE-eecCccccceeeeeeeceeeecccccccccccCCCceEeeecccCc
Confidence 4445777666 4455444443 44555554 6889999999999886543
No 75
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=20.32 E-value=85 Score=18.09 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=15.6
Q ss_pred CCCCchHHHHHHHHHHHhhC
Q 031986 1 MASGNLPRRIVKETQRLLSE 20 (149)
Q Consensus 1 m~s~~~~kRl~~E~~~l~~~ 20 (149)
|+|+.+++-+.+|+++-.+.
T Consensus 28 mSsgEAI~~VA~~iRe~~~~ 47 (51)
T PF03701_consen 28 MSSGEAIAIVAQEIREEHQG 47 (51)
T ss_pred ccHHHHHHHHHHHHHHHHHh
Confidence 67888888888888876653
No 76
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=20.05 E-value=2.8e+02 Score=23.04 Aligned_cols=31 Identities=13% Similarity=0.103 Sum_probs=25.2
Q ss_pred ECCCCCCCCCCeEEEeeccccCcccCCCcEE
Q 031986 59 FLPEDYPMSAPKVRFLTKIYHPNIDKLGRIC 89 (149)
Q Consensus 59 ~fp~~YP~~pP~v~f~~~i~hpni~~~G~ic 89 (149)
.|...|++.||-++....+.|--+.++-++=
T Consensus 303 ~fr~~~~~t~PyltaeP~i~~HrL~p~DkFL 333 (390)
T KOG0700|consen 303 KFRIPYIGTPPYLTAEPSITHHKLTPNDKFL 333 (390)
T ss_pred hcCCCCCCCCCceeccceEEEEEcCCCCeEE
Confidence 6889999999999999988877777655543
No 77
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=20.04 E-value=1.6e+02 Score=23.12 Aligned_cols=25 Identities=28% Similarity=0.732 Sum_probs=21.0
Q ss_pred CCCEEEEEEECCCCCC------------------CCCCeEEEe
Q 031986 50 EGGVFKLELFLPEDYP------------------MSAPKVRFL 74 (149)
Q Consensus 50 ~gg~f~~~i~fp~~YP------------------~~pP~v~f~ 74 (149)
+.|.|.|+-..|.-|| ..||.|.|.
T Consensus 171 ~~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 171 EDGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 3588999999999998 478888775
No 78
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=20.03 E-value=1.3e+02 Score=19.80 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=22.0
Q ss_pred eeEEEEECCCCCCCCCCEEEEEEECCC
Q 031986 36 YFNVMILGPSQSPYEGGVFKLELFLPE 62 (149)
Q Consensus 36 ~w~~~i~Gp~~tpy~gg~f~~~i~fp~ 62 (149)
-.|+.+.|++..+=.|..+.+++.|-+
T Consensus 77 g~HlmL~g~~~~l~~G~~v~ltL~f~~ 103 (110)
T PF04314_consen 77 GYHLMLMGLKRPLKPGDTVPLTLTFED 103 (110)
T ss_dssp CCEEEEECESS-B-TTEEEEEEEEETT
T ss_pred CEEEEEeCCcccCCCCCEEEEEEEECC
Confidence 478999999999999999999999864
Done!