Query 031986
Match_columns 149
No_of_seqs 139 out of 1107
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 12:49:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031986.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031986hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpr_A Ubiquitin-conjugating e 100.0 2.1E-51 7.1E-56 292.3 17.2 146 2-147 1-146 (151)
2 2c2v_B Ubiquitin-conjugating e 100.0 1.7E-51 5.6E-56 293.6 14.7 146 2-147 2-147 (154)
3 1ayz_A UBC2, ubiquitin-conjuga 100.0 4.5E-51 1.6E-55 295.1 16.9 145 3-147 2-146 (169)
4 2aak_A UBC1, ubiquitin conjuga 100.0 7E-51 2.4E-55 289.9 17.0 145 3-147 2-146 (152)
5 1z2u_A Ubiquitin-conjugating e 100.0 8.7E-51 3E-55 288.8 16.9 146 2-147 1-146 (150)
6 2ayv_A Ubiquitin-conjugating e 100.0 1.4E-50 4.7E-55 291.8 18.2 145 3-147 19-163 (166)
7 2ucz_A UBC7, ubiquitin conjuga 100.0 7.2E-51 2.5E-55 293.3 16.2 146 1-147 1-160 (165)
8 3h8k_A Ubiquitin-conjugating e 100.0 1.5E-50 5.3E-55 291.4 17.9 145 3-147 1-159 (164)
9 1zdn_A Ubiquitin-conjugating e 100.0 4.9E-51 1.7E-55 292.3 15.2 145 3-147 11-155 (158)
10 2e2c_A Ubiquitin conjugating e 100.0 1.5E-50 5.1E-55 289.3 16.7 144 3-147 7-150 (156)
11 2c4o_A Ubiquitin-conjugating e 100.0 2.7E-50 9.4E-55 290.1 17.4 144 4-147 18-161 (165)
12 2r0j_A Ubiquitin carrier prote 100.0 1.4E-50 4.9E-55 287.4 15.5 142 6-147 2-143 (149)
13 1yh2_A HSPC150 protein similar 100.0 5.2E-50 1.8E-54 289.8 17.5 145 3-147 2-150 (169)
14 1jat_A Ubiquitin-conjugating e 100.0 1.5E-50 5.3E-55 288.9 14.5 145 3-147 3-147 (155)
15 3rcz_B SUMO-conjugating enzyme 100.0 6.4E-50 2.2E-54 287.6 16.0 145 3-147 8-159 (163)
16 2bep_A Ubiquitin-conjugating e 100.0 9.7E-50 3.3E-54 285.9 16.9 146 2-147 5-154 (159)
17 1fxt_A Ubiquitin-conjugating e 100.0 2.6E-50 8.9E-55 286.1 13.6 142 6-147 2-145 (149)
18 3rz3_A Ubiquitin-conjugating e 100.0 7.5E-50 2.6E-54 292.2 16.4 147 1-147 3-169 (183)
19 1i7k_A Ubiquitin-conjugating e 100.0 5.6E-50 1.9E-54 291.5 15.1 145 2-147 27-171 (179)
20 2awf_A Ubiquitin-conjugating e 100.0 1.6E-49 5.5E-54 287.8 15.6 143 3-145 15-172 (172)
21 2f4z_A Tgtwinscan_2721 - E2 do 100.0 2.6E-49 8.9E-54 291.0 16.6 145 3-147 30-188 (193)
22 1yrv_A Ubiquitin-conjugating l 100.0 1.1E-49 3.6E-54 287.9 14.3 144 3-147 21-167 (169)
23 2gjd_A Ubiquitin-conjugating e 100.0 2.1E-49 7.2E-54 283.6 15.5 145 3-147 2-153 (157)
24 3k9o_A Ubiquitin-conjugating e 100.0 6.4E-49 2.2E-53 291.2 17.4 146 2-147 2-151 (201)
25 2grr_A Ubiquitin-conjugating e 100.0 3.3E-49 1.1E-53 283.6 15.1 146 2-147 4-156 (161)
26 3bzh_A Ubiquitin-conjugating e 100.0 9.3E-49 3.2E-53 288.4 17.9 143 5-147 48-190 (194)
27 2pwq_A Ubiquitin conjugating e 100.0 3.4E-49 1.2E-53 294.7 15.5 144 3-146 21-165 (216)
28 1wzv_A Ubiquitin-conjugating e 100.0 1.1E-48 3.8E-53 279.3 15.6 143 4-147 3-147 (155)
29 1y8x_A Ubiquitin-conjugating e 100.0 4.7E-48 1.6E-52 277.3 15.7 141 4-147 5-146 (160)
30 2y9m_A Ubiquitin-conjugating e 100.0 9.2E-48 3.1E-52 278.7 15.4 146 2-147 3-164 (172)
31 3e46_A Ubiquitin-conjugating e 100.0 1.2E-47 4E-52 292.1 16.8 145 3-147 55-203 (253)
32 2nvu_C NEDD8-conjugating enzym 100.0 1E-47 3.5E-52 280.0 15.3 142 3-147 24-166 (180)
33 3fn1_B NEDD8-conjugating enzym 100.0 1.8E-47 6.1E-52 276.1 16.1 143 4-147 13-163 (167)
34 1tte_A Ubiquitin-conjugating e 100.0 3E-48 1E-52 289.4 11.6 142 5-146 2-145 (215)
35 2onu_A Ubiquitin-conjugating e 100.0 5.4E-48 1.9E-52 274.8 9.7 140 5-147 2-143 (152)
36 2z5d_A Ubiquitin-conjugating e 100.0 1.9E-47 6.5E-52 278.0 10.8 139 5-147 25-165 (179)
37 3o2u_A NEDD8-conjugating enzym 100.0 2.1E-46 7.2E-51 275.2 15.4 142 3-147 27-175 (190)
38 1c4z_D UBCH7, ubiquitin conjug 100.0 3.8E-47 1.3E-51 271.1 11.1 141 6-147 3-145 (154)
39 4ds2_A Ubiquitin-conjugating e 100.0 6E-46 2.1E-50 268.1 13.8 142 3-144 6-164 (167)
40 1yf9_A Ubiquitin carrier prote 100.0 3.8E-46 1.3E-50 269.7 12.3 139 5-147 12-152 (171)
41 4ddg_A Ubiquitin-conjugating e 100.0 1.5E-45 5.1E-50 297.3 16.1 143 5-147 3-145 (399)
42 2q0v_A Ubiquitin-conjugating e 100.0 1.4E-43 4.9E-48 252.7 10.5 131 3-134 19-156 (156)
43 2fo3_A Ubiquitin-conjugating e 100.0 1.6E-42 5.5E-47 239.4 13.9 117 4-120 5-122 (125)
44 1jat_B Ubiquitin-conjugating e 100.0 1.7E-43 5.8E-48 248.0 7.4 130 1-131 2-138 (138)
45 2h2y_A Ubiquitin-conjugating e 100.0 9.1E-42 3.1E-46 238.6 15.8 116 4-119 19-135 (136)
46 2a4d_A Ubiquitin-conjugating e 100.0 1.3E-41 4.5E-46 243.2 12.6 124 5-128 25-156 (160)
47 3ceg_A Baculoviral IAP repeat- 100.0 1.5E-41 5.1E-46 265.3 12.3 146 2-147 73-239 (323)
48 2a7l_A Hypothetical ubiquitin- 100.0 5.4E-41 1.8E-45 234.5 12.8 109 7-115 24-136 (136)
49 2hlw_A Ubiquitin-conjugating e 100.0 4.2E-41 1.4E-45 242.9 10.1 125 4-128 34-166 (170)
50 2f4w_A Ubiquitin-conjugating e 100.0 1.9E-38 6.6E-43 232.3 15.8 136 3-140 12-153 (187)
51 1zuo_A Hypothetical protein LO 100.0 6.1E-39 2.1E-43 234.7 5.5 119 2-120 24-159 (186)
52 2z6o_A UFM1-conjugating enzyme 99.9 2.1E-29 7.1E-34 178.4 1.6 96 7-108 34-144 (172)
53 3r3q_A Suppressor protein STP2 99.8 2.7E-20 9.2E-25 132.6 9.9 114 7-121 30-161 (162)
54 3kpa_A Probable ubiquitin fold 99.8 2.8E-20 9.4E-25 129.1 -0.2 96 6-107 35-145 (168)
55 3obq_A Tumor susceptibility ge 99.6 7E-15 2.4E-19 103.0 6.9 81 30-116 49-138 (146)
56 2ebm_A RWD domain-containing p 97.4 0.0049 1.7E-07 41.3 11.9 68 6-75 11-78 (128)
57 2day_A Ring finger protein 25; 96.8 0.019 6.6E-07 38.3 10.0 73 4-76 7-83 (128)
58 2daw_A RWD domain containing p 96.5 0.03 1E-06 38.8 9.4 67 53-139 76-142 (154)
59 2yz0_A Serine/threonine-protei 96.1 0.17 5.9E-06 34.0 12.8 67 7-75 12-85 (138)
60 3zqs_A E3 ubiquitin-protein li 95.6 0.14 4.7E-06 36.8 9.7 84 8-115 4-87 (186)
61 2ebk_A RWD domain-containing p 95.4 0.28 9.6E-06 32.5 10.3 68 6-74 8-78 (128)
62 1ukx_A GCN2, GCN2 EIF2alpha ki 94.2 0.74 2.5E-05 30.7 10.7 70 5-75 10-86 (137)
63 2dax_A Protein C21ORF6; RWD do 92.5 0.31 1E-05 33.4 5.8 24 53-76 74-97 (152)
64 3u3c_B Paxillin LD2 peptide; 4 74.5 2.3 8E-05 19.6 2.0 21 5-25 5-25 (26)
65 2cwb_A Chimera of immunoglobul 71.4 0.82 2.8E-05 29.8 0.0 33 114-146 18-50 (108)
66 2f4m_B UV excision repair prot 36.9 38 0.0013 19.4 3.2 22 123-144 37-58 (61)
67 3s7v_A Major capsid protein VP 36.0 77 0.0026 23.6 5.4 41 47-90 197-239 (277)
68 2bum_A Protocatechuate 3,4-dio 33.8 43 0.0015 24.0 3.7 26 49-74 108-138 (209)
69 1pve_A HHR23B, UV excision rep 32.0 41 0.0014 20.0 2.8 22 123-144 39-60 (72)
70 3rls_A YAF9, protein AF-9 homo 31.2 1.3E+02 0.0046 20.9 5.9 43 32-76 30-72 (175)
71 1vps_A Polyomavirus VP1 pentam 31.0 1.2E+02 0.0041 22.8 5.7 43 45-90 199-243 (289)
72 1sid_A Polyomavirus coat prote 30.1 93 0.0032 24.3 5.1 47 24-90 226-274 (383)
73 3g9r_A Fusion complex of HIV-1 29.6 36 0.0012 17.7 1.9 14 6-19 29-42 (42)
74 3nxg_A Major capsid protein VP 28.0 75 0.0026 23.6 4.2 44 44-90 185-230 (272)
75 1sva_1 Simian virus 40; virus 25.4 82 0.0028 24.4 4.1 24 67-90 230-255 (361)
76 4fmh_A VP1; viral capsid prote 24.5 1.3E+02 0.0045 22.6 5.0 44 44-90 202-247 (289)
77 3iys_A Major capsid protein VP 23.1 46 0.0016 25.6 2.3 44 43-89 200-245 (343)
78 3kxt_A Chromatin protein CREN7 21.3 58 0.002 18.3 1.9 11 56-66 46-56 (56)
79 2rf4_B DNA-directed RNA polyme 21.2 43 0.0015 20.6 1.5 12 5-16 62-73 (87)
80 3qrl_A Transcription initiatio 20.5 2E+02 0.0069 19.3 5.6 42 34-77 32-76 (140)
81 1m46_B IQ4, IQ4 motif from MYO 20.4 60 0.0021 14.8 1.5 13 5-17 8-20 (26)
No 1
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=2.1e-51 Score=292.29 Aligned_cols=146 Identities=45% Similarity=0.814 Sum_probs=141.4
Q ss_pred CCCchHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCc
Q 031986 2 ASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPN 81 (149)
Q Consensus 2 ~s~~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpn 81 (149)
++..+.|||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 1 sa~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 80 (151)
T 4gpr_A 1 SAAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPN 80 (151)
T ss_dssp -CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred CchHHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccce
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 82 IDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 82 i~~~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
|+.+|.||+++|.++|+|++++++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+++.
T Consensus 81 v~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~ 146 (151)
T 4gpr_A 81 INKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTR 146 (151)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ECCCCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999874
No 2
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.7e-51 Score=293.64 Aligned_cols=146 Identities=73% Similarity=1.242 Sum_probs=140.0
Q ss_pred CCCchHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCc
Q 031986 2 ASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPN 81 (149)
Q Consensus 2 ~s~~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpn 81 (149)
+|..+.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 2 ~s~~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 81 (154)
T 2c2v_B 2 GSAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPN 81 (154)
T ss_dssp CSCSCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCc
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 82 IDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 82 i~~~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
|+.+|.||+++|.++|+|++++++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+++.
T Consensus 82 v~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~ 147 (154)
T 2c2v_B 82 VDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTR 147 (154)
T ss_dssp BCTTCBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999863
No 3
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=4.5e-51 Score=295.14 Aligned_cols=145 Identities=39% Similarity=0.782 Sum_probs=140.9
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcc
Q 031986 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (149)
Q Consensus 3 s~~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni 82 (149)
|..+.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 2 s~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI 81 (169)
T 1ayz_A 2 STPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNV 81 (169)
T ss_dssp CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred ChHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCC
Confidence 44688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 83 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 83 ~~~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
+.+|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+++.
T Consensus 82 ~~~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~ 146 (169)
T 1ayz_A 82 YANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVE 146 (169)
T ss_dssp CTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999873
No 4
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=7e-51 Score=289.88 Aligned_cols=145 Identities=39% Similarity=0.796 Sum_probs=140.9
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcc
Q 031986 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (149)
Q Consensus 3 s~~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni 82 (149)
|..+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 2 s~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 81 (152)
T 2aak_A 2 STPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNI 81 (152)
T ss_dssp CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred ChHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 83 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 83 ~~~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
+.+|.||+++|.++|+|++++++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+++.
T Consensus 82 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~ 146 (152)
T 2aak_A 82 YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVE 146 (152)
T ss_dssp CTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999873
No 5
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=8.7e-51 Score=288.83 Aligned_cols=146 Identities=47% Similarity=0.802 Sum_probs=141.8
Q ss_pred CCCchHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCc
Q 031986 2 ASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPN 81 (149)
Q Consensus 2 ~s~~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpn 81 (149)
.|..+.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 1 ~s~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 80 (150)
T 1z2u_A 1 GSHMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN 80 (150)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred CchHHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCc
Confidence 36778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 82 IDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 82 i~~~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
|+.+|.||+++|.++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+++.
T Consensus 81 v~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~ 146 (150)
T 1z2u_A 81 INSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQ 146 (150)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCCCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999863
No 6
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=1.4e-50 Score=291.84 Aligned_cols=145 Identities=50% Similarity=0.831 Sum_probs=141.0
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcc
Q 031986 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (149)
Q Consensus 3 s~~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni 82 (149)
++.+.+||++|+++|++++++|+++.+.++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 19 ~~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI 98 (166)
T 2ayv_A 19 FQGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNI 98 (166)
T ss_dssp CTTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTB
T ss_pred CcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 83 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 83 ~~~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
+.+|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+++.
T Consensus 99 ~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~ 163 (166)
T 2ayv_A 99 NSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQ 163 (166)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999863
No 7
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=7.2e-51 Score=293.34 Aligned_cols=146 Identities=34% Similarity=0.721 Sum_probs=139.4
Q ss_pred CCCCchHHHHHHHHHHHhhCCCCCeEEEecC-CCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeecccc
Q 031986 1 MASGNLPRRIVKETQRLLSEPAPGISASPAE-DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 79 (149)
Q Consensus 1 m~s~~~~kRl~~E~~~l~~~~~~~~~~~~~~-~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~h 79 (149)
|++ .+.+||++|+++|++++++|+++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 1 M~~-~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 79 (165)
T 2ucz_A 1 MSK-TAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILH 79 (165)
T ss_dssp -CH-HHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSC
T ss_pred CCh-HHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCcc
Confidence 554 788999999999999999999999865 799999999999999999999999999999999999999999999999
Q ss_pred CcccCCCcEEecCC-------------CCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCc
Q 031986 80 PNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPV 146 (149)
Q Consensus 80 pni~~~G~ic~~~l-------------~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v 146 (149)
|||+.+|+||+++| .++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||++|
T Consensus 80 PNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~~ 159 (165)
T 2ucz_A 80 PNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSI 159 (165)
T ss_dssp TTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCCCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHH
Confidence 99999999999999 67899999999999999999999999999999999999999999999999987
Q ss_pred c
Q 031986 147 I 147 (149)
Q Consensus 147 ~ 147 (149)
.
T Consensus 160 ~ 160 (165)
T 2ucz_A 160 L 160 (165)
T ss_dssp H
T ss_pred H
Confidence 3
No 8
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=1.5e-50 Score=291.37 Aligned_cols=145 Identities=34% Similarity=0.692 Sum_probs=139.7
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEEecCC-CCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCc
Q 031986 3 SGNLPRRIVKETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPN 81 (149)
Q Consensus 3 s~~~~kRl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpn 81 (149)
++.+.|||++|++++++++++|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 1 a~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPN 80 (164)
T 3h8k_A 1 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPN 80 (164)
T ss_dssp CCHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred CcHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCC
Confidence 457899999999999999999999998765 9999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEecCCC-------------CCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 82 IDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 82 i~~~G~ic~~~l~-------------~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
|+.+|+||+++|. ++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+++.
T Consensus 81 V~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~ 159 (164)
T 3h8k_A 81 IYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQ 159 (164)
T ss_dssp BCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9999999999996 78999999999999999999999999999999999999999999999999874
No 9
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.9e-51 Score=292.29 Aligned_cols=145 Identities=37% Similarity=0.689 Sum_probs=141.0
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcc
Q 031986 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (149)
Q Consensus 3 s~~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni 82 (149)
|..+.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 11 s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 90 (158)
T 1zdn_A 11 PPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNV 90 (158)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred CHHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 83 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 83 ~~~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
+.+|.||+++|.++|+|++++++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+++.
T Consensus 91 ~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~ 155 (158)
T 1zdn_A 91 GANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 155 (158)
T ss_dssp CTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999863
No 10
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=1.5e-50 Score=289.29 Aligned_cols=144 Identities=38% Similarity=0.705 Sum_probs=140.0
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcc
Q 031986 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (149)
Q Consensus 3 s~~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni 82 (149)
+..+.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 7 ~~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 86 (156)
T 2e2c_A 7 RHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNV 86 (156)
T ss_dssp CCCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 83 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 83 ~~~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
+.+|.||+++|.++|+|++++++||.+|+++|.+|++++|+|.+||++| +|+++|.++||+++.
T Consensus 87 ~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~ 150 (156)
T 2e2c_A 87 DQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYK 150 (156)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred ccCceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 899999999999874
No 11
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=2.7e-50 Score=290.12 Aligned_cols=144 Identities=47% Similarity=0.815 Sum_probs=140.3
Q ss_pred CchHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCccc
Q 031986 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID 83 (149)
Q Consensus 4 ~~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~ 83 (149)
+.+.+||++|++++++++++|+++.+.++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 18 ~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~ 97 (165)
T 2c4o_A 18 SMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 97 (165)
T ss_dssp HHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 84 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 84 ~~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
.+|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+++.
T Consensus 98 ~~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~ 161 (165)
T 2c4o_A 98 SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 161 (165)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999863
No 12
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=1.4e-50 Score=287.41 Aligned_cols=142 Identities=68% Similarity=1.139 Sum_probs=138.5
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcccCC
Q 031986 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 85 (149)
Q Consensus 6 ~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~~~ 85 (149)
+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+
T Consensus 2 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~ 81 (149)
T 2r0j_A 2 IPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 81 (149)
T ss_dssp CCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 86 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 86 G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
|.||+++|.++|+|++++++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+++.
T Consensus 82 G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~ 143 (149)
T 2r0j_A 82 GRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNK 143 (149)
T ss_dssp CBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CEEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999863
No 13
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.2e-50 Score=289.79 Aligned_cols=145 Identities=47% Similarity=0.829 Sum_probs=141.0
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcc
Q 031986 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (149)
Q Consensus 3 s~~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni 82 (149)
|..+.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv 81 (169)
T 1yh2_A 2 SMQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNI 81 (169)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEecCCC----CCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 83 DKLGRICLDILK----DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 83 ~~~G~ic~~~l~----~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
+.+|.||+++|. ++|+|++++++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+++.
T Consensus 82 ~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~ 150 (169)
T 1yh2_A 82 DSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTE 150 (169)
T ss_dssp CTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CcCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999998 89999999999999999999999999999999999999999999999998863
No 14
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=1.5e-50 Score=288.92 Aligned_cols=145 Identities=64% Similarity=1.167 Sum_probs=140.8
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcc
Q 031986 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (149)
Q Consensus 3 s~~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni 82 (149)
+..+.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 3 ~~~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 82 (155)
T 1jat_A 3 AASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNI 82 (155)
T ss_dssp CCSCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred hHHHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 83 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 83 ~~~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
+.+|.||+++|.++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+++.
T Consensus 83 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~ 147 (155)
T 1jat_A 83 DRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTK 147 (155)
T ss_dssp CTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999863
No 15
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=6.4e-50 Score=287.62 Aligned_cols=145 Identities=32% Similarity=0.608 Sum_probs=139.0
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEEecCC-----CCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeecc
Q 031986 3 SGNLPRRIVKETQRLLSEPAPGISASPAED-----NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKI 77 (149)
Q Consensus 3 s~~~~kRl~~E~~~l~~~~~~~~~~~~~~~-----~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i 77 (149)
|..+.+||++|+++|++++++|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus 8 ~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i 87 (163)
T 3rcz_B 8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPL 87 (163)
T ss_dssp -CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred cHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCC
Confidence 678999999999999999999999998765 899999999999999999999999999999999999999999999
Q ss_pred ccCcccCCCcEEecCCCC--CCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 78 YHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 78 ~hpni~~~G~ic~~~l~~--~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
|||||+.+|.||+++|.. +|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+++.
T Consensus 88 ~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~ 159 (163)
T 3rcz_B 88 FHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQAR 159 (163)
T ss_dssp CSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHH
Confidence 999999999999999975 4999999999999999999999999999999999999999999999999874
No 16
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=9.7e-50 Score=285.87 Aligned_cols=146 Identities=42% Similarity=0.721 Sum_probs=139.8
Q ss_pred CCCchHHHHHHHHHHHhhC---CCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccc
Q 031986 2 ASGNLPRRIVKETQRLLSE---PAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIY 78 (149)
Q Consensus 2 ~s~~~~kRl~~E~~~l~~~---~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~ 78 (149)
||..+.+||++|+++|+++ +++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus 5 Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 84 (159)
T 2bep_A 5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 84 (159)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred chHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCC
Confidence 4557889999999999985 5789999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccC-CCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 79 HPNIDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 79 hpni~~-~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
||||+. +|.||+++|.++|+|++++++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+++.
T Consensus 85 HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~ 154 (159)
T 2bep_A 85 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAH 154 (159)
T ss_dssp BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ccCCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHH
Confidence 999995 999999999999999999999999999999999999999999999999999999999999863
No 17
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=2.6e-50 Score=286.07 Aligned_cols=142 Identities=39% Similarity=0.748 Sum_probs=138.1
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEEecCC-CCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcccC
Q 031986 6 LPRRIVKETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK 84 (149)
Q Consensus 6 ~~kRl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~~ 84 (149)
+.+||++|++++++++++|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~ 81 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS 81 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence 579999999999999999999999877 9999999999999999999999999999999999999999999999999998
Q ss_pred -CCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 85 -LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 85 -~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
+|.||+++|.++|+|++++++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+++.
T Consensus 82 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~ 145 (149)
T 1fxt_A 82 VTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTR 145 (149)
T ss_dssp SSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred CCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999863
No 18
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=7.5e-50 Score=292.20 Aligned_cols=147 Identities=35% Similarity=0.682 Sum_probs=139.5
Q ss_pred CCCCchHHHHHHHHHHHhhCCCCCeEEE-ecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeecccc
Q 031986 1 MASGNLPRRIVKETQRLLSEPAPGISAS-PAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 79 (149)
Q Consensus 1 m~s~~~~kRl~~E~~~l~~~~~~~~~~~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~h 79 (149)
|++..+.|||++|+++|++++++|+++. +.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 3 m~~~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 82 (183)
T 3rz3_A 3 MGSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWH 82 (183)
T ss_dssp --CCHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCC
T ss_pred CcchHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCcc
Confidence 7888999999999999999999999999 678899999999999999999999999999999999999999999999999
Q ss_pred CcccCCCcEEecCCC-------------CCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH------CHHHHHH
Q 031986 80 PNIDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKA------DETEAVE 140 (149)
Q Consensus 80 pni~~~G~ic~~~l~-------------~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~------~~~~f~~ 140 (149)
|||+.+|.||+++|. ++|+|+++|++||.+|+++|.+|++++|+|.+||++|++ |+++|.+
T Consensus 83 PnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~~ 162 (183)
T 3rz3_A 83 PNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTD 162 (183)
T ss_dssp TTBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHHH
T ss_pred CCCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHHH
Confidence 999999999999996 789999999999999999999999999999999999998 7899999
Q ss_pred HhccCcc
Q 031986 141 TGMDPVI 147 (149)
Q Consensus 141 ~~~~~v~ 147 (149)
++|++|.
T Consensus 163 ~v~~~v~ 169 (183)
T 3rz3_A 163 IIRKQVL 169 (183)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999873
No 19
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.6e-50 Score=291.52 Aligned_cols=145 Identities=41% Similarity=0.661 Sum_probs=138.9
Q ss_pred CCCchHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCc
Q 031986 2 ASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPN 81 (149)
Q Consensus 2 ~s~~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpn 81 (149)
++..+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|++||||
T Consensus 27 ~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN 106 (179)
T 1i7k_A 27 ARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPN 106 (179)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTT
T ss_pred cChHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCc
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 82 IDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 82 i~~~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
|+.+|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++| +|+++|.++|+++|.
T Consensus 107 V~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~ 171 (179)
T 1i7k_A 107 VDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYS 171 (179)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHH
T ss_pred cccCCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 999999999999873
No 20
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=1.6e-49 Score=287.84 Aligned_cols=143 Identities=34% Similarity=0.722 Sum_probs=110.8
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEEecC-CCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCc
Q 031986 3 SGNLPRRIVKETQRLLSEPAPGISASPAE-DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPN 81 (149)
Q Consensus 3 s~~~~kRl~~E~~~l~~~~~~~~~~~~~~-~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpn 81 (149)
+..+.|||++|+++|++++++|+++.+.+ +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 15 ~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPN 94 (172)
T 2awf_A 15 VPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPN 94 (172)
T ss_dssp CCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred hHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCC
Confidence 46899999999999999999999999865 79999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEecCCC-------------CCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHH-HHHHHhccC
Q 031986 82 IDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADET-EAVETGMDP 145 (149)
Q Consensus 82 i~~~G~ic~~~l~-------------~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~-~f~~~~~~~ 145 (149)
|+.+|.||+++|. ++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|++ +|.++||+|
T Consensus 95 V~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~~ 172 (172)
T 2awf_A 95 VDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARC 172 (172)
T ss_dssp BCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC-----------------------------
T ss_pred CCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHhC
Confidence 9999999999996 689999999999999999999999999999999999999999 999999986
No 21
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=2.6e-49 Score=290.98 Aligned_cols=145 Identities=42% Similarity=0.715 Sum_probs=136.2
Q ss_pred CCchHHHHHHHHHHHhhCCC-------------CCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCC
Q 031986 3 SGNLPRRIVKETQRLLSEPA-------------PGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAP 69 (149)
Q Consensus 3 s~~~~kRl~~E~~~l~~~~~-------------~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP 69 (149)
+..+.|||++|+++|+++++ +|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 30 ~~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP 109 (193)
T 2f4z_A 30 TPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPP 109 (193)
T ss_dssp --CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred CCHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCC
Confidence 35688999999999999876 79999999999999999999999999999999999999999999999
Q ss_pred eEEEeeccccCccc-CCCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 70 KVRFLTKIYHPNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 70 ~v~f~~~i~hpni~-~~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
+|+|.|++|||||+ .+|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+.
T Consensus 110 ~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~t~ 188 (193)
T 2f4z_A 110 KMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTE 188 (193)
T ss_dssp EEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred eEEEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHH
Confidence 99999999999999 5999999999999999999999999999999999999999999999999999999999999873
No 22
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-49 Score=287.88 Aligned_cols=144 Identities=27% Similarity=0.504 Sum_probs=139.0
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcc
Q 031986 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (149)
Q Consensus 3 s~~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni 82 (149)
+..+.+||++|+++|++++++|+++.+.++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 21 ~~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI 100 (169)
T 1yrv_A 21 HGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNV 100 (169)
T ss_dssp GCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTB
T ss_pred ChHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCcc
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -cCCCcEEecCCC--CCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 83 -DKLGRICLDILK--DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 83 -~~~G~ic~~~l~--~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
+.+|.||+++|. ++|+|++++++||.+|+++|.+|++++|+|.+||++|++|+++|.++ |++|.
T Consensus 101 ~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~ 167 (169)
T 1yrv_A 101 DPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFN 167 (169)
T ss_dssp CTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC
T ss_pred cCCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhh
Confidence 789999999998 89999999999999999999999999999999999999999999999 88875
No 23
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=2.1e-49 Score=283.57 Aligned_cols=145 Identities=28% Similarity=0.585 Sum_probs=138.2
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEEecC-----CCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeecc
Q 031986 3 SGNLPRRIVKETQRLLSEPAPGISASPAE-----DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKI 77 (149)
Q Consensus 3 s~~~~kRl~~E~~~l~~~~~~~~~~~~~~-----~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i 77 (149)
|..+.+||++|++++++++++|+++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus 2 s~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i 81 (157)
T 2gjd_A 2 SSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGF 81 (157)
T ss_dssp -CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTC
T ss_pred ChHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCC
Confidence 45788999999999999999999998864 4899999999999999999999999999999999999999999999
Q ss_pred ccCcccCCCcEEecCCCC--CCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 78 YHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 78 ~hpni~~~G~ic~~~l~~--~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
|||||+.+|.||+++|.. +|+|++++++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+++.
T Consensus 82 ~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~ 153 (157)
T 2gjd_A 82 YHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAK 153 (157)
T ss_dssp CCTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ccCCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHH
Confidence 999999999999999986 7999999999999999999999999999999999999999999999999873
No 24
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=6.4e-49 Score=291.17 Aligned_cols=146 Identities=42% Similarity=0.721 Sum_probs=138.7
Q ss_pred CCCchHHHHHHHHHHHhhC---CCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccc
Q 031986 2 ASGNLPRRIVKETQRLLSE---PAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIY 78 (149)
Q Consensus 2 ~s~~~~kRl~~E~~~l~~~---~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~ 78 (149)
||..+.|||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus 2 Ms~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 81 (201)
T 3k9o_A 2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 81 (201)
T ss_dssp --CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred CcHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcc
Confidence 3567889999999999987 3689999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccC-CCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 79 HPNIDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 79 hpni~~-~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
||||+. +|.||+++|.++|+|++++++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+.
T Consensus 82 HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~ 151 (201)
T 3k9o_A 82 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAH 151 (201)
T ss_dssp BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cCCCcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHH
Confidence 999995 999999999999999999999999999999999999999999999999999999999998863
No 25
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=3.3e-49 Score=283.59 Aligned_cols=146 Identities=32% Similarity=0.601 Sum_probs=138.9
Q ss_pred CCCchHHHHHHHHHHHhhCCCCCeEEEecC-----CCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeec
Q 031986 2 ASGNLPRRIVKETQRLLSEPAPGISASPAE-----DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 76 (149)
Q Consensus 2 ~s~~~~kRl~~E~~~l~~~~~~~~~~~~~~-----~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~ 76 (149)
|+..+.+||++|+++|++++++|+.+.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 4 M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 83 (161)
T 2grr_A 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP 83 (161)
T ss_dssp CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecC
Confidence 455688999999999999999999998753 689999999999999999999999999999999999999999999
Q ss_pred cccCcccCCCcEEecCCCC--CCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 77 IYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 77 i~hpni~~~G~ic~~~l~~--~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
+|||||+.+|.||+++|.+ +|+|++++++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+++.
T Consensus 84 i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~ 156 (161)
T 2grr_A 84 LFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAK 156 (161)
T ss_dssp CCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9999999999999999975 8999999999999999999999999999999999999999999999999873
No 26
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=9.3e-49 Score=288.36 Aligned_cols=143 Identities=45% Similarity=0.738 Sum_probs=139.7
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcccC
Q 031986 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK 84 (149)
Q Consensus 5 ~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~~ 84 (149)
.+.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|++|||||+.
T Consensus 48 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~ 127 (194)
T 3bzh_A 48 TSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINS 127 (194)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceECC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 85 LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 85 ~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+++.
T Consensus 128 ~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~ 190 (194)
T 3bzh_A 128 QGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTK 190 (194)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999873
No 27
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=3.4e-49 Score=294.71 Aligned_cols=144 Identities=45% Similarity=0.756 Sum_probs=139.9
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcc
Q 031986 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (149)
Q Consensus 3 s~~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni 82 (149)
++.+.+||++|+++|++++++|+++.+.++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 21 ~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI 100 (216)
T 2pwq_A 21 GSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNI 100 (216)
T ss_dssp SCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred cCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCc
Q 031986 83 D-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPV 146 (149)
Q Consensus 83 ~-~~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v 146 (149)
+ .+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+++
T Consensus 101 ~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t 165 (216)
T 2pwq_A 101 SSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWT 165 (216)
T ss_dssp CTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHH
T ss_pred cCCCCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Confidence 9 489999999999999999999999999999999999999999999999999999999999886
No 28
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=1.1e-48 Score=279.34 Aligned_cols=143 Identities=31% Similarity=0.621 Sum_probs=137.4
Q ss_pred CchHHHHHHHHHHHhhCCCCCeEE-EecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcc
Q 031986 4 GNLPRRIVKETQRLLSEPAPGISA-SPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (149)
Q Consensus 4 ~~~~kRl~~E~~~l~~~~~~~~~~-~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni 82 (149)
..+.+||++|+++|++++++|+.+ .++++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 3 m~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV 81 (155)
T 1wzv_A 3 HMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNV 81 (155)
T ss_dssp --CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcC
Confidence 357899999999999999999999 788899999999999 999999999999999999999999999999999999999
Q ss_pred cCCCcEEecCC-CCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 83 DKLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 83 ~~~G~ic~~~l-~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
+.+|.||+++| .++|+|++++++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+++.
T Consensus 82 ~~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~ 147 (155)
T 1wzv_A 82 DENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTL 147 (155)
T ss_dssp CTTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 899999999999999999999999999999999999999999999999998863
No 29
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.7e-48 Score=277.26 Aligned_cols=141 Identities=30% Similarity=0.574 Sum_probs=135.3
Q ss_pred CchHHHHHHHHHHHhhCCCCCeEEE-ecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcc
Q 031986 4 GNLPRRIVKETQRLLSEPAPGISAS-PAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (149)
Q Consensus 4 ~~~~kRl~~E~~~l~~~~~~~~~~~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni 82 (149)
+.+.+||++|++++ ++++|+++. ++++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 5 ~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 81 (160)
T 1y8x_A 5 SAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNI 81 (160)
T ss_dssp CHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred cHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcC
Confidence 46889999999999 567899998 7889999999988 9999999999999999999999999999999999999999
Q ss_pred cCCCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 83 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 83 ~~~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
+.+|.||+++|.++|+|++++++||.+|+++|.+|++++|+|.+||++|++|+++|.++||++|.
T Consensus 82 ~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~ 146 (160)
T 1y8x_A 82 DLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMR 146 (160)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCCCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999873
No 30
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=9.2e-48 Score=278.67 Aligned_cols=146 Identities=30% Similarity=0.532 Sum_probs=135.8
Q ss_pred CCCchHHHHHHHHHHHhh-C-C------CC---CeEEEe-cCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCC
Q 031986 2 ASGNLPRRIVKETQRLLS-E-P------AP---GISASP-AEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAP 69 (149)
Q Consensus 2 ~s~~~~kRl~~E~~~l~~-~-~------~~---~~~~~~-~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP 69 (149)
||..+.+||++|+++|++ + + +. ++.+.+ .++|+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 3 Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP 82 (172)
T 2y9m_A 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPP 82 (172)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred CcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCC
Confidence 456789999999999998 5 3 33 467777 7889999999999999999999999999999999999999
Q ss_pred eEEEee-ccccCccc-CCCcEEecCCC-CCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH-CHHHHHHHhccC
Q 031986 70 KVRFLT-KIYHPNID-KLGRICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKA-DETEAVETGMDP 145 (149)
Q Consensus 70 ~v~f~~-~i~hpni~-~~G~ic~~~l~-~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~-~~~~f~~~~~~~ 145 (149)
+|+|.| ++|||||+ .+|.||+++|. ++|+|++++++||.+|+++|.+|++++|+|.+||++|++ |+++|.++||++
T Consensus 83 ~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~~ 162 (172)
T 2y9m_A 83 KISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYF 162 (172)
T ss_dssp EEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHHH
T ss_pred EEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999 99999996 79999999998 899999999999999999999999999999999999999 999999999998
Q ss_pred cc
Q 031986 146 VI 147 (149)
Q Consensus 146 v~ 147 (149)
+.
T Consensus 163 ~~ 164 (172)
T 2y9m_A 163 LA 164 (172)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 31
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=1.2e-47 Score=292.11 Aligned_cols=145 Identities=42% Similarity=0.728 Sum_probs=139.0
Q ss_pred CCchHHHHHHHHHHHhhC---CCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeecccc
Q 031986 3 SGNLPRRIVKETQRLLSE---PAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 79 (149)
Q Consensus 3 s~~~~kRl~~E~~~l~~~---~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~h 79 (149)
|..+.+||++|+++|+++ ++.|+++.+.++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus 55 s~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H 134 (253)
T 3e46_A 55 ANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWH 134 (253)
T ss_dssp CHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred cHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCcc
Confidence 456899999999999987 46899999999999999999999999999999999999999999999999999999999
Q ss_pred CcccC-CCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 80 PNIDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 80 pni~~-~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
|||+. +|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+.
T Consensus 135 PNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~ 203 (253)
T 3e46_A 135 PNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAH 203 (253)
T ss_dssp TTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCccCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHH
Confidence 99995 999999999999999999999999999999999999999999999999999999999998863
No 32
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1e-47 Score=280.02 Aligned_cols=142 Identities=29% Similarity=0.546 Sum_probs=136.0
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEE-ecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCc
Q 031986 3 SGNLPRRIVKETQRLLSEPAPGISAS-PAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPN 81 (149)
Q Consensus 3 s~~~~kRl~~E~~~l~~~~~~~~~~~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpn 81 (149)
+..+.+||++|+++| ++++|+++. ++++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 24 ~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPN 100 (180)
T 2nvu_C 24 ASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPN 100 (180)
T ss_dssp CCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred ccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCC
Confidence 456889999999999 578899998 7889999999988 999999999999999999999999999999999999999
Q ss_pred ccCCCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 82 IDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 82 i~~~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
|+.+|.||+++|.++|+|++++++||.+|+++|.+|++++|+|.+||++|++|+++|.++||++|.
T Consensus 101 V~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~ 166 (180)
T 2nvu_C 101 IDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMR 166 (180)
T ss_dssp BCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCCCcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999873
No 33
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=1.8e-47 Score=276.09 Aligned_cols=143 Identities=30% Similarity=0.552 Sum_probs=136.2
Q ss_pred CchHHHHHHHHHHHhhCCCCCeEEEe-cCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcc
Q 031986 4 GNLPRRIVKETQRLLSEPAPGISASP-AEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (149)
Q Consensus 4 ~~~~kRl~~E~~~l~~~~~~~~~~~~-~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni 82 (149)
..+.|||++|+++|++++++|+++.+ .++|++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 13 s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 91 (167)
T 3fn1_B 13 SVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNI 91 (167)
T ss_dssp CHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCC
Confidence 46889999999999999999999985 567899999998 8999999999999999999999999999999999999999
Q ss_pred cCCCcEEecCCCC------CCCccCCHHHHHHHHHHHhhC-CCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 83 DKLGRICLDILKD------KWSPALQIRTVLLSIQALLSA-PNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 83 ~~~G~ic~~~l~~------~W~p~~~i~~il~~i~~ll~~-~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
+.+|.||+++|.. +|+|+++|++||.+|+++|.+ |++++|+|.+||++|++|+++|.++||+++.
T Consensus 92 ~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~ 163 (167)
T 3fn1_B 92 TETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIK 163 (167)
T ss_dssp CTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9999999999975 799999999999999999999 6999999999999999999999999999874
No 34
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=3e-48 Score=289.43 Aligned_cols=142 Identities=38% Similarity=0.754 Sum_probs=136.9
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEEecCC-CCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCccc
Q 031986 5 NLPRRIVKETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID 83 (149)
Q Consensus 5 ~~~kRl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~ 83 (149)
.+.+||++|+++|++++++|+++.+.++ ++++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~ 81 (215)
T 1tte_A 2 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 81 (215)
T ss_dssp TTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSC
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCc
Confidence 4789999999999999999999999776 456999999999999999999999999999999999999999999999999
Q ss_pred C-CCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCc
Q 031986 84 K-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPV 146 (149)
Q Consensus 84 ~-~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v 146 (149)
. +|.||+++|.++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+
T Consensus 82 ~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t 145 (215)
T 1tte_A 82 SVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWT 145 (215)
T ss_dssp SSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHH
Confidence 8 99999999999999999999999999999999999999999999999999999999999876
No 35
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=5.4e-48 Score=274.82 Aligned_cols=140 Identities=31% Similarity=0.645 Sum_probs=133.0
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcccC
Q 031986 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK 84 (149)
Q Consensus 5 ~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~~ 84 (149)
++.|||++|++++++. |+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 2 sa~~Rl~kEl~~l~~~---~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~ 78 (152)
T 2onu_A 2 TSLTRKQCDFTKLIMA---GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDE 78 (152)
T ss_dssp -CCCHHHHTHHHHHHH---TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred hHHHHHHHHHHhcCcC---CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcC
Confidence 4679999999999873 7889998999999999999999999999999999999999999999999999999999995
Q ss_pred -CCcEEecCCCCCCCccCCHHHHHHH-HHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 85 -LGRICLDILKDKWSPALQIRTVLLS-IQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 85 -~G~ic~~~l~~~W~p~~~i~~il~~-i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
+|.||+++|.++|+|++++++||.+ |++||.+|++++|+|.+||++|++|+++|.++||+++.
T Consensus 79 ~~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~ 143 (152)
T 2onu_A 79 ASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVK 143 (152)
T ss_dssp TTCBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cCCeEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9999999999999999999999999 68999999999999999999999999999999999864
No 36
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.9e-47 Score=277.97 Aligned_cols=139 Identities=31% Similarity=0.639 Sum_probs=132.8
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcccC
Q 031986 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK 84 (149)
Q Consensus 5 ~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~~ 84 (149)
.+.|||++|+++|++ +|+++.+. +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 25 ~a~~RL~kEl~~l~~---~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~ 100 (179)
T 2z5d_A 25 PGKRRMDTDVIKLIE---SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDE 100 (179)
T ss_dssp HHHHHHHHHHHHHHH---SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred HHHHHHHHHHHhcCc---CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCC
Confidence 578999999999985 57888886 67899999999999999999999999999999999999999999999999998
Q ss_pred -CCcEEecCCCCCCCccCCHHHHHHH-HHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 85 -LGRICLDILKDKWSPALQIRTVLLS-IQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 85 -~G~ic~~~l~~~W~p~~~i~~il~~-i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
+|.||+++|.++|+|++++++||.+ |+++|.+|++++|+|.+||++|++|+++|.++||+++.
T Consensus 101 ~~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~ 165 (179)
T 2z5d_A 101 ASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQ 165 (179)
T ss_dssp TTCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCeEeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9999999999999999999999999 99999999999999999999999999999999999863
No 37
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=2.1e-46 Score=275.18 Aligned_cols=142 Identities=32% Similarity=0.580 Sum_probs=136.0
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEE----ecCCCCc---eeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEee
Q 031986 3 SGNLPRRIVKETQRLLSEPAPGISAS----PAEDNMR---YFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLT 75 (149)
Q Consensus 3 s~~~~kRl~~E~~~l~~~~~~~~~~~----~~~~~~~---~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~ 75 (149)
+..+.+||++|+++|+ +++|+++. ++++|++ +|+++|. |++|||+||.|+++|.||++||++||+|+|.|
T Consensus 27 ~s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t 103 (190)
T 3o2u_A 27 LSAARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLK 103 (190)
T ss_dssp CCHHHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECS
T ss_pred ccHHHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEec
Confidence 3578999999999998 67899998 8899999 9999997 88899999999999999999999999999999
Q ss_pred ccccCcccCCCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 76 KIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 76 ~i~hpni~~~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
++|||||+.+|.||+++|.++|+|++++++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+++.
T Consensus 104 ~i~HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~ 175 (190)
T 3o2u_A 104 KIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMS 175 (190)
T ss_dssp CCCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHB
T ss_pred CcccCCCCCCCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999874
No 38
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=3.8e-47 Score=271.12 Aligned_cols=141 Identities=31% Similarity=0.683 Sum_probs=134.2
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEEe-cCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcccC
Q 031986 6 LPRRIVKETQRLLSEPAPGISASP-AEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK 84 (149)
Q Consensus 6 ~~kRl~~E~~~l~~~~~~~~~~~~-~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~~ 84 (149)
+.+||++|+++|++++++|+.+.+ .++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 81 (154)
T 1c4z_D 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE 81 (154)
T ss_dssp -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCC
Confidence 568999999999999999998654 6789999999998 99999999999999999999999999999999999999999
Q ss_pred CCcEEecCCC-CCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 85 LGRICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 85 ~G~ic~~~l~-~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
+|.||+++|. ++|+|++++++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+++.
T Consensus 82 ~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~ 145 (154)
T 1c4z_D 82 KGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTK 145 (154)
T ss_dssp TCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHT
T ss_pred CCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999996 89999999999999999999999999999999999999999999999999874
No 39
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=6e-46 Score=268.06 Aligned_cols=142 Identities=23% Similarity=0.431 Sum_probs=133.2
Q ss_pred CCchHHHHHHHHHHHhhCC------------CCCeEEEecCCCCceeEEEEECCCCCCCC--CCEEEEEEECCCCCCCCC
Q 031986 3 SGNLPRRIVKETQRLLSEP------------APGISASPAEDNMRYFNVMILGPSQSPYE--GGVFKLELFLPEDYPMSA 68 (149)
Q Consensus 3 s~~~~kRl~~E~~~l~~~~------------~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~--gg~f~~~i~fp~~YP~~p 68 (149)
|..+.|||++|+++|++++ +.|+.+.+.++|+++|+++|.||++|||+ ||.|+++|.||++||++|
T Consensus 6 s~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~p 85 (167)
T 4ds2_A 6 KNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEP 85 (167)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSC
T ss_pred cHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCC
Confidence 4578899999999999876 77999999999999999999999999999 999999999999999999
Q ss_pred CeEEEeeccccCcccCCCcEEecCCCCCCCccCCHHHHHH-HHHHHhhC--CCCCCcccHHHHHHHHHCHHHHHHHhcc
Q 031986 69 PKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL-SIQALLSA--PNPDDPLSDNIAKHWKADETEAVETGMD 144 (149)
Q Consensus 69 P~v~f~~~i~hpni~~~G~ic~~~l~~~W~p~~~i~~il~-~i~~ll~~--~~~~~~~n~~a~~~~~~~~~~f~~~~~~ 144 (149)
|+|+|.|++|||||+.+|.||+++|.++|+|+++++++|. .|++++.. |++++|+|.+||++|++|+++|.++||+
T Consensus 86 P~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~~vrr 164 (167)
T 4ds2_A 86 PTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVRR 164 (167)
T ss_dssp CEEEESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHHHHTT
T ss_pred CEEEEeCCcccccCCCCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHHHHHhh
Confidence 9999999999999999999999999999999999999755 56777775 8999999999999999999999999995
No 40
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=3.8e-46 Score=269.72 Aligned_cols=139 Identities=32% Similarity=0.595 Sum_probs=130.4
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcccC
Q 031986 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK 84 (149)
Q Consensus 5 ~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~~ 84 (149)
.+.+||++|+++|++++. ++ +.++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 12 ~~~~RL~~El~~l~~~~~-~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~ 87 (171)
T 1yf9_A 12 RSNRRREMDYMRLCNSTR-KV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDE 87 (171)
T ss_dssp -CCHHHHHHHHHHHSSSS-CE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred cHHHHHHHHHHHHHhCCC-CC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcc
Confidence 578999999999999874 44 35789999999999999999999999999999999999999999999999999995
Q ss_pred -CCcEEecCCCCCCCccCCHHHHHHHH-HHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 85 -LGRICLDILKDKWSPALQIRTVLLSI-QALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 85 -~G~ic~~~l~~~W~p~~~i~~il~~i-~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
+|.||+++|.++|+|++++++||.+| +++|.+|++++|+|.+||++|++|+++|.++||+++.
T Consensus 88 ~~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~ 152 (171)
T 1yf9_A 88 RSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVS 152 (171)
T ss_dssp TTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cCCeEeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHH
Confidence 99999999999999999999999997 7999999999999999999999999999999998863
No 41
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=1.5e-45 Score=297.27 Aligned_cols=143 Identities=47% Similarity=0.794 Sum_probs=140.0
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcccC
Q 031986 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK 84 (149)
Q Consensus 5 ~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~~ 84 (149)
.+.|||++|+++|++++++|+++.|.++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 3 ~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 82 (399)
T 4ddg_A 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 82 (399)
T ss_dssp HHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHCHHHHHHHhccCcc
Q 031986 85 LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGMDPVI 147 (149)
Q Consensus 85 ~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v~ 147 (149)
+|.||+++|.++|+|++++++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+++.
T Consensus 83 ~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~ 145 (399)
T 4ddg_A 83 NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 145 (399)
T ss_dssp TCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999873
No 42
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=1.4e-43 Score=252.74 Aligned_cols=131 Identities=25% Similarity=0.437 Sum_probs=120.7
Q ss_pred CCchHHHHHHHHHHHhhC-CCCCeEEEecC-C--CCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccc
Q 031986 3 SGNLPRRIVKETQRLLSE-PAPGISASPAE-D--NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIY 78 (149)
Q Consensus 3 s~~~~kRl~~E~~~l~~~-~~~~~~~~~~~-~--~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~ 78 (149)
+..+.+||++|+++++++ +++|+++.+.+ + |++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus 19 ~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~ 98 (156)
T 2q0v_A 19 IVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIE 98 (156)
T ss_dssp CCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred cchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccc
Confidence 457889999999999998 78899998843 3 5999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCcE---EecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHC
Q 031986 79 HPNIDKLGRI---CLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKAD 134 (149)
Q Consensus 79 hpni~~~G~i---c~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~~~ 134 (149)
||||+.+|+| |++++. +|+|++++++||.+|+++|.+|++++++|.+||++|++|
T Consensus 99 HPNV~~~G~icisCL~iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n 156 (156)
T 2q0v_A 99 MSCVDNCGRVIKNNLHILK-NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN 156 (156)
T ss_dssp CTTBCTTSBBCGGGSHHHH-TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred cCCCccCCeEehhhccccc-CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence 9999999999 888887 599999999999999999999999999999999999765
No 43
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=1.6e-42 Score=239.36 Aligned_cols=117 Identities=34% Similarity=0.622 Sum_probs=106.4
Q ss_pred CchHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeecc-ccCcc
Q 031986 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKI-YHPNI 82 (149)
Q Consensus 4 ~~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i-~hpni 82 (149)
+.+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||||
T Consensus 5 ~~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv 84 (125)
T 2fo3_A 5 GNANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHV 84 (125)
T ss_dssp ----CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcC
Confidence 35779999999999999999999999999999999999999999999999999999999999999999999996 99999
Q ss_pred cCCCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCC
Q 031986 83 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPD 120 (149)
Q Consensus 83 ~~~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~ 120 (149)
+.+|+||+++|.++|+|++++++||.+|+++|.+|+..
T Consensus 85 ~~~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~ 122 (125)
T 2fo3_A 85 YSNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEK 122 (125)
T ss_dssp CTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC-----
T ss_pred CCCCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999998864
No 44
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=1.7e-43 Score=248.04 Aligned_cols=130 Identities=25% Similarity=0.419 Sum_probs=117.6
Q ss_pred CCCCchHHHHHHHHHHHhhC-CCCCeEEEecC-C--CCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeec
Q 031986 1 MASGNLPRRIVKETQRLLSE-PAPGISASPAE-D--NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 76 (149)
Q Consensus 1 m~s~~~~kRl~~E~~~l~~~-~~~~~~~~~~~-~--~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~ 76 (149)
|++..+.+||++|+++++++ +++|+++.+.+ + |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 2 m~~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 81 (138)
T 1jat_B 2 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISK 81 (138)
T ss_dssp -CCCCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred cchHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcc
Confidence 77788899999999999998 78999998843 3 48999999999999999999999999999999999999999999
Q ss_pred cccCcccCC-CcE--EecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 031986 77 IYHPNIDKL-GRI--CLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHW 131 (149)
Q Consensus 77 i~hpni~~~-G~i--c~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~ 131 (149)
+|||||+.+ |.| |++++. +|+|++++++||.+|+++|.+|++++++|.+||++|
T Consensus 82 i~HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y 138 (138)
T 1jat_B 82 INLPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 138 (138)
T ss_dssp CCCTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred cccCCEeCCCCEEeeecccCC-CCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence 999999985 999 898876 899999999999999999999999999999987654
No 45
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=9.1e-42 Score=238.63 Aligned_cols=116 Identities=33% Similarity=0.613 Sum_probs=112.2
Q ss_pred CchHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeecc-ccCcc
Q 031986 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKI-YHPNI 82 (149)
Q Consensus 4 ~~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i-~hpni 82 (149)
+.+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||||
T Consensus 19 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv 98 (136)
T 2h2y_A 19 GNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHV 98 (136)
T ss_dssp TSHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTB
T ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcC
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999996 99999
Q ss_pred cCCCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCC
Q 031986 83 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 119 (149)
Q Consensus 83 ~~~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~ 119 (149)
+.+|+||+++|.++|+|++++++||.+|+++|.+|+.
T Consensus 99 ~~~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~ 135 (136)
T 2h2y_A 99 YSNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE 135 (136)
T ss_dssp CTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred CCCCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence 9999999999999999999999999999999999874
No 46
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=1.3e-41 Score=243.23 Aligned_cols=124 Identities=23% Similarity=0.398 Sum_probs=115.8
Q ss_pred chHHHHHHHHHHHhhCCCCC-eEEEe-cCCC--CceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccC
Q 031986 5 NLPRRIVKETQRLLSEPAPG-ISASP-AEDN--MRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHP 80 (149)
Q Consensus 5 ~~~kRl~~E~~~l~~~~~~~-~~~~~-~~~~--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hp 80 (149)
.+.|||++|++++++++++| +++.+ +++| +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus 25 p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HP 104 (160)
T 2a4d_A 25 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMN 104 (160)
T ss_dssp HHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCT
T ss_pred hHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCceeC
Confidence 57899999999999998888 77876 4554 89999999999999999999999999999999999999999999999
Q ss_pred ccc-CCCcEEecCCC--CCCCccCCHHHHHHHHHHHhh-CCCCCCcccHHHH
Q 031986 81 NID-KLGRICLDILK--DKWSPALQIRTVLLSIQALLS-APNPDDPLSDNIA 128 (149)
Q Consensus 81 ni~-~~G~ic~~~l~--~~W~p~~~i~~il~~i~~ll~-~~~~~~~~n~~a~ 128 (149)
||+ .+|+||++++. ++|+|++++++||.+|+++|. .||+++|+|.|||
T Consensus 105 NV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 156 (160)
T 2a4d_A 105 GVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 156 (160)
T ss_dssp TBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred CEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence 999 69999999997 899999999999999999995 6999999999886
No 47
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=1.5e-41 Score=265.30 Aligned_cols=146 Identities=27% Similarity=0.541 Sum_probs=134.2
Q ss_pred CCCchHHHHHHHHHHHhhCCCC----CeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeec-
Q 031986 2 ASGNLPRRIVKETQRLLSEPAP----GISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK- 76 (149)
Q Consensus 2 ~s~~~~kRl~~E~~~l~~~~~~----~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~- 76 (149)
+|..+.+||++|+++|++++++ ++.+.+.++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+
T Consensus 73 ~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~ 152 (323)
T 3ceg_A 73 NSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTG 152 (323)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCST
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccC
Confidence 4567899999999999998776 45677889999999999999999999999999999999999999999999998
Q ss_pred ----cccCcccCCCcEEecCCC-------CCCCccC-CHHHHHHHHHHHhh--CCCCCCcccHHH--HHHHHHCHHHHHH
Q 031986 77 ----IYHPNIDKLGRICLDILK-------DKWSPAL-QIRTVLLSIQALLS--APNPDDPLSDNI--AKHWKADETEAVE 140 (149)
Q Consensus 77 ----i~hpni~~~G~ic~~~l~-------~~W~p~~-~i~~il~~i~~ll~--~~~~~~~~n~~a--~~~~~~~~~~f~~ 140 (149)
+|||||+.+|.||+++|. ++|+|++ +|.+||.+|+++|. +|++++|+|.++ +.+|.+|+++|.+
T Consensus 153 g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y~~ 232 (323)
T 3ceg_A 153 GHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDG 232 (323)
T ss_dssp TTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHHHH
T ss_pred CCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHHHH
Confidence 999999999999999997 6899999 89999999999997 677789999987 6789999999999
Q ss_pred HhccCcc
Q 031986 141 TGMDPVI 147 (149)
Q Consensus 141 ~~~~~v~ 147 (149)
+||+++.
T Consensus 233 ~vr~~t~ 239 (323)
T 3ceg_A 233 NIRQATV 239 (323)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 48
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.4e-41 Score=234.49 Aligned_cols=109 Identities=35% Similarity=0.678 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHhhCCCCCeEEE--ecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccc--cCcc
Q 031986 7 PRRIVKETQRLLSEPAPGISAS--PAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIY--HPNI 82 (149)
Q Consensus 7 ~kRl~~E~~~l~~~~~~~~~~~--~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~--hpni 82 (149)
.+||++|++++++++++|+++. +.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++| ||||
T Consensus 24 ~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV 103 (136)
T 2a7l_A 24 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHV 103 (136)
T ss_dssp CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTB
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccC
Confidence 4999999999999999999965 78899999999999999999999999999999999999999999999998 9999
Q ss_pred cCCCcEEecCCCCCCCccCCHHHHHHHHHHHhh
Q 031986 83 DKLGRICLDILKDKWSPALQIRTVLLSIQALLS 115 (149)
Q Consensus 83 ~~~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~ 115 (149)
+.+|+||+++|.++|+|++++++||.+|+++|+
T Consensus 104 ~~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~ 136 (136)
T 2a7l_A 104 YSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136 (136)
T ss_dssp CTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred CCCCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence 999999999999999999999999999999874
No 49
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=4.2e-41 Score=242.93 Aligned_cols=125 Identities=23% Similarity=0.391 Sum_probs=116.0
Q ss_pred CchHHHHHHHHHHHhhCCCCC-eEEEe-cCCC--CceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeecccc
Q 031986 4 GNLPRRIVKETQRLLSEPAPG-ISASP-AEDN--MRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 79 (149)
Q Consensus 4 ~~~~kRl~~E~~~l~~~~~~~-~~~~~-~~~~--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~h 79 (149)
..+.+||++|++++++++++| +++.+ +++| +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 34 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H 113 (170)
T 2hlw_A 34 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM 113 (170)
T ss_dssp CCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCC
T ss_pred CHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEeccccc
Confidence 357899999999999998888 67776 4554 8999999999999999999999999999999999999999999999
Q ss_pred Cccc-CCCcEEecCCC--CCCCccCCHHHHHHHHHHHhhC-CCCCCcccHHHH
Q 031986 80 PNID-KLGRICLDILK--DKWSPALQIRTVLLSIQALLSA-PNPDDPLSDNIA 128 (149)
Q Consensus 80 pni~-~~G~ic~~~l~--~~W~p~~~i~~il~~i~~ll~~-~~~~~~~n~~a~ 128 (149)
|||+ .+|.||+++|. ++|+|++++++||.+|+++|.+ ||+++|+|.|||
T Consensus 114 PNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 166 (170)
T 2hlw_A 114 NGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 166 (170)
T ss_dssp SSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred CCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence 9999 69999999997 8999999999999999999975 999999999886
No 50
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.9e-38 Score=232.32 Aligned_cols=136 Identities=24% Similarity=0.513 Sum_probs=114.1
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcc
Q 031986 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (149)
Q Consensus 3 s~~~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni 82 (149)
+..+.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+ |||+
T Consensus 12 ~~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~ 89 (187)
T 2f4w_A 12 PTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRF 89 (187)
T ss_dssp --CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSB
T ss_pred ccHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Ccee
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred cCCCcEEecCC---CCCCCccCCHHHHHHHHHHHhhCCCCCCc---ccHHHHHHHHHCHHHHHH
Q 031986 83 DKLGRICLDIL---KDKWSPALQIRTVLLSIQALLSAPNPDDP---LSDNIAKHWKADETEAVE 140 (149)
Q Consensus 83 ~~~G~ic~~~l---~~~W~p~~~i~~il~~i~~ll~~~~~~~~---~n~~a~~~~~~~~~~f~~ 140 (149)
+.+|.||+++| .++|+|+++|.+||.+|+++|.+|+++.. ......+.|..+...|..
T Consensus 90 ~~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~g~~~~~~~~r~~~a~~s~~~~~ 153 (187)
T 2f4w_A 90 KCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNL 153 (187)
T ss_dssp CTTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTTBCCCCHHHHHHHHHHHHHHHH
T ss_pred ccCCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCCcccccChHHHHHHHHHHHHHhh
Confidence 99999999999 68999999999999999999999998743 234445555555554443
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00 E-value=6.1e-39 Score=234.70 Aligned_cols=119 Identities=21% Similarity=0.380 Sum_probs=112.0
Q ss_pred CCCchHHHHHHHHHHHhhCC---CCCeEEEecCCCCceeEEEEECC-CCCCCCC-----------CEEEEEEECCCCCCC
Q 031986 2 ASGNLPRRIVKETQRLLSEP---APGISASPAEDNMRYFNVMILGP-SQSPYEG-----------GVFKLELFLPEDYPM 66 (149)
Q Consensus 2 ~s~~~~kRl~~E~~~l~~~~---~~~~~~~~~~~~~~~w~~~i~Gp-~~tpy~g-----------g~f~~~i~fp~~YP~ 66 (149)
+|..+.+||++|+++|++++ ++++++.+.++|++.|+++|.|| ++|||+| |.|+++|.||++||+
T Consensus 24 ~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~ 103 (186)
T 1zuo_A 24 GSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPF 103 (186)
T ss_dssp CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTS
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCC
Confidence 35578999999999999988 68899999999999999999997 9999998 899999999999999
Q ss_pred CCCeEEEeeccccC-cccCCCcEEecCCC-CCCCccCCHHHHHHHHHHHhhCCCCC
Q 031986 67 SAPKVRFLTKIYHP-NIDKLGRICLDILK-DKWSPALQIRTVLLSIQALLSAPNPD 120 (149)
Q Consensus 67 ~pP~v~f~~~i~hp-ni~~~G~ic~~~l~-~~W~p~~~i~~il~~i~~ll~~~~~~ 120 (149)
+||+|+|.+++||| ||+.+|.||+++|. ++|+|+++|++||.+|+++|.+|++.
T Consensus 104 ~PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~ 159 (186)
T 1zuo_A 104 DPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKAR 159 (186)
T ss_dssp SCCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCE
T ss_pred CCCeEEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChh
Confidence 99999999999999 69999999999996 79999999999999999999998754
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.95 E-value=2.1e-29 Score=178.42 Aligned_cols=96 Identities=19% Similarity=0.301 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCC----------EEEEEEECCCCCCCCCCeEEEeec
Q 031986 7 PRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGG----------VFKLELFLPEDYPMSAPKVRFLTK 76 (149)
Q Consensus 7 ~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~f~~~ 76 (149)
.+||++|++.|++ ++.+.++|++.|...+.||++|+|+|| .|++++.||++||.+||+|+|.+.
T Consensus 34 ~~RL~eE~k~L~k------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~ 107 (172)
T 2z6o_A 34 VQRLKEEYQSLIR------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPEL 107 (172)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGG
T ss_pred HHHHHHHHHHHHH------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCC
Confidence 8999999999999 467778899999999999999999999 999999999999999999999998
Q ss_pred -cccCcccCCCcEEecCC-CC---CCCccCCHHHHHH
Q 031986 77 -IYHPNIDKLGRICLDIL-KD---KWSPALQIRTVLL 108 (149)
Q Consensus 77 -i~hpni~~~G~ic~~~l-~~---~W~p~~~i~~il~ 108 (149)
++|||||.+|+||++++ .. .|+|.++|.++|.
T Consensus 108 ~~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL~ 144 (172)
T 2z6o_A 108 DGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMA 144 (172)
T ss_dssp TTTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHHH
T ss_pred CCCCCCCCCCCcEechhhccccccccCCccCHHHHHh
Confidence 99999999999999999 43 4559999999984
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.83 E-value=2.7e-20 Score=132.63 Aligned_cols=114 Identities=24% Similarity=0.422 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhhCCC---CCeEEEecCCCCceeEEEEECCCCCCCCCCE---EEEEEECCCCCCCCCCeEEEeec----
Q 031986 7 PRRIVKETQRLLSEPA---PGISASPAEDNMRYFNVMILGPSQSPYEGGV---FKLELFLPEDYPMSAPKVRFLTK---- 76 (149)
Q Consensus 7 ~kRl~~E~~~l~~~~~---~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~---f~~~i~fp~~YP~~pP~v~f~~~---- 76 (149)
.+|..+|...+.+.-+ +...+...+|....+-+.+.|.-.++|+|+. |.+.|.||++||++||.|.|.++
T Consensus 30 ~~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m 109 (162)
T 3r3q_A 30 GRTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDM 109 (162)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCT
T ss_pred hhHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccc
Confidence 4677788877765322 2333455666666777777777779999999 88999999999999999988651
Q ss_pred ------cc-cCcccCCCcEEecCCCCCCCc-cCCHHHHHHHHHHHhhCCCCCC
Q 031986 77 ------IY-HPNIDKLGRICLDILKDKWSP-ALQIRTVLLSIQALLSAPNPDD 121 (149)
Q Consensus 77 ------i~-hpni~~~G~ic~~~l~~~W~p-~~~i~~il~~i~~ll~~~~~~~ 121 (149)
++ |||||.+|+||+++|. +|+| +.++.++|.+|.++|.+|+++.
T Consensus 110 ~~~~~~I~~hpnVD~~G~I~lpyL~-~W~p~~s~L~~ll~~l~~lf~ep~~d~ 161 (162)
T 3r3q_A 110 NTISSSLPIQEYIDSNGWIALPILH-AWDPAAMNLIMVVQELMSLLHEPPQDQ 161 (162)
T ss_dssp TTSCTTSTHHHHBCTTSBBCCGGGG-SCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred cccccccCCCCCCCCCCcEeCcccc-cCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 77 9999999999999996 6998 6899999999999999999875
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.76 E-value=2.8e-20 Score=129.07 Aligned_cols=96 Identities=19% Similarity=0.349 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCC----------EEEEEEECCCCCCCCCCeEEEee
Q 031986 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGG----------VFKLELFLPEDYPMSAPKVRFLT 75 (149)
Q Consensus 6 ~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~f~~ 75 (149)
=..||.+||..|-+ +++...++-..|...+.||+||+|.|+ .|.+++.||.+||.+||+|+|.+
T Consensus 35 w~~RlkeEy~alI~------yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ 108 (168)
T 3kpa_A 35 WTARLKEEYASLIT------YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPE 108 (168)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGG
T ss_pred HHHHHHHHHHHHHH------HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeeccc
Confidence 46899999999876 344444555679999999999999999 99999999999999999999999
Q ss_pred c-cccCcccCCCcEEecCCC-CCC---CccCCHHHHH
Q 031986 76 K-IYHPNIDKLGRICLDILK-DKW---SPALQIRTVL 107 (149)
Q Consensus 76 ~-i~hpni~~~G~ic~~~l~-~~W---~p~~~i~~il 107 (149)
. .+||++|.+|+||++++. .-| .|.++|...|
T Consensus 109 ldgkt~kmYr~GkICLdIhwkPlW~~n~P~fGiahal 145 (168)
T 3kpa_A 109 LEGKTVKMYRGGKICMTTHFFPLWARNVPYFGISHVL 145 (168)
T ss_dssp GTTTCSSEETTTEECCCTTHHHHHHHTTTTCCHHHHH
T ss_pred ccCcCccccCCCcEEeccccchhhHhcCCchhHHHHH
Confidence 5 899999999999999862 122 3556776654
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.55 E-value=7e-15 Score=102.98 Aligned_cols=81 Identities=20% Similarity=0.459 Sum_probs=71.4
Q ss_pred cCCCCceeEEEEECCCCCCCCCCEEEE--EEECCCCCCCCCCeEEEeec------cccCcccCCCcEEecCCCCCCCc-c
Q 031986 30 AEDNMRYFNVMILGPSQSPYEGGVFKL--ELFLPEDYPMSAPKVRFLTK------IYHPNIDKLGRICLDILKDKWSP-A 100 (149)
Q Consensus 30 ~~~~~~~w~~~i~Gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~~~------i~hpni~~~G~ic~~~l~~~W~p-~ 100 (149)
...+++.|.++|. .+|+|+.|.+ .|-||++||++||.| |.++ ..|+|||.+|++|++.|.+ |++ .
T Consensus 49 ~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~~-W~~~~ 122 (146)
T 3obq_A 49 GSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLHE-WKHPQ 122 (146)
T ss_dssp TTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHHT-CCTTT
T ss_pred ChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEecccccc-cCCCC
Confidence 3468899999997 6799999995 899999999999999 6655 4899999999999999975 987 7
Q ss_pred CCHHHHHHHHHHHhhC
Q 031986 101 LQIRTVLLSIQALLSA 116 (149)
Q Consensus 101 ~~i~~il~~i~~ll~~ 116 (149)
.++.+++..+++.|.+
T Consensus 123 snL~~ll~~l~~~F~~ 138 (146)
T 3obq_A 123 SDLLGLIQVMIVVFGD 138 (146)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh
Confidence 8999999999998875
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.42 E-value=0.0049 Score=41.27 Aligned_cols=68 Identities=18% Similarity=0.182 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEee
Q 031986 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLT 75 (149)
Q Consensus 6 ~~kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~ 75 (149)
...+...|+..|+.-=+..+.+. .+....+.+.|..-.+..-..-.+.+.+.||++||..||.+.+.+
T Consensus 11 ~~e~q~~EleaL~sIy~d~~~~~--~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 11 YGEEQRNELEALESIYPDSFTVL--SENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEEC--CSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred hHHHHHHHHHHHHHHccCceEEc--cCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 45777889988886433444432 223456666665322222234478899999999999999998755
No 57
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=96.80 E-value=0.019 Score=38.28 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=45.2
Q ss_pred CchHHHHHHHHHHHhhCCCCCeEEEecC--CCCceeEEEEECCCCCCC--CCCEEEEEEECCCCCCCCCCeEEEeec
Q 031986 4 GNLPRRIVKETQRLLSEPAPGISASPAE--DNMRYFNVMILGPSQSPY--EGGVFKLELFLPEDYPMSAPKVRFLTK 76 (149)
Q Consensus 4 ~~~~kRl~~E~~~l~~~~~~~~~~~~~~--~~~~~w~~~i~Gp~~tpy--~gg~f~~~i~fp~~YP~~pP~v~f~~~ 76 (149)
.....+...|+..|+.-=+..+.+.... .....+.+.|..+.+..- ..-.+.+.+.+|++||..+|.|...+.
T Consensus 7 ~e~~e~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~ 83 (128)
T 2day_A 7 GEEDWVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP 83 (128)
T ss_dssp SCCCCHHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred cchHHHHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC
Confidence 3344578899988886433445443221 123455556652222111 124788999999999999999988764
No 58
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=96.46 E-value=0.03 Score=38.83 Aligned_cols=67 Identities=10% Similarity=0.090 Sum_probs=40.2
Q ss_pred EEEEEEECCCCCCCCCCeEEEeeccccCcccCCCcEEecCCCCCCCccCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 031986 53 VFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWK 132 (149)
Q Consensus 53 ~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~~~G~ic~~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~n~~a~~~~~ 132 (149)
.+.++|.+|.+||..+|.|...+. |-...-...+...|...+.+.+...+.=-.+..+.+
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~~--------------------~l~~~~~~~L~~~L~~~l~~~~lG~~mif~lve~lq 135 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRSS--------------------ELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQWLQ 135 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEECS--------------------SSCHHHHHHHHHHHHHHHTTSCTTSCSHHHHHHHHH
T ss_pred eEEEEEEcCCCCCCCCCcEEEEeC--------------------CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 799999999999999999986542 212222334444555555443334444445555555
Q ss_pred HCHHHHH
Q 031986 133 ADETEAV 139 (149)
Q Consensus 133 ~~~~~f~ 139 (149)
++-..+.
T Consensus 136 e~~~~~l 142 (154)
T 2daw_A 136 DNSASYF 142 (154)
T ss_dssp HTTHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 59
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.17 Score=34.01 Aligned_cols=67 Identities=13% Similarity=0.185 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecC-------CCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEee
Q 031986 7 PRRIVKETQRLLSEPAPGISASPAE-------DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLT 75 (149)
Q Consensus 7 ~kRl~~E~~~l~~~~~~~~~~~~~~-------~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~ 75 (149)
..+-..|+..|+.-=+..+.+. .. .....+.+.|.+..+ .-..-.+.+.+.+|++||..+|.|.+.+
T Consensus 12 ~e~q~~EleaL~SIY~d~~~~~-~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 85 (138)
T 2yz0_A 12 YEIQCNELEAIRSIYMDDFTDL-TKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN 85 (138)
T ss_dssp HHHHHHHHHHHHTTSSSSEECC-STTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred HHHHHHHHHHHHHHChhhheec-ccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence 4456777877776323333322 11 124567778873222 2123478899999999999999998765
No 60
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=95.64 E-value=0.14 Score=36.77 Aligned_cols=84 Identities=15% Similarity=0.245 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcccCCCc
Q 031986 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGR 87 (149)
Q Consensus 8 kRl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~~~G~ 87 (149)
.+|.+|+.++-=+ .+.-.+.++....+.+.. =.|-.+.++|.++.+||.++|.+...-|. |
T Consensus 4 ~~li~Ei~~iGW~-----~l~~id~~~~~i~l~~~D-----~~gR~H~l~v~l~~~yp~~~P~~~~DlP~--~------- 64 (186)
T 3zqs_A 4 SSLIEEIGTLGWD-----KLVYADTCFSTIKLKAED-----ASGREHLITLKLKAKYPAESPDYFVDFPV--P------- 64 (186)
T ss_dssp CSHHHHHHHHCGG-----GEEEECTTSSEEEEEEEC-----TTSCEEEEEEECCTTTTTSCCEEECCCSS--C-------
T ss_pred HHHHHHHHHhCCc-----eeeeecCCccEEEEEEEe-----CCCCeEEEEEEECCCCCCCCCeeEEcCCC--C-------
Confidence 3677787776322 122235678889999984 34678999999999999999988654442 1
Q ss_pred EEecCCCCCCCccCCHHHHHHHHHHHhh
Q 031986 88 ICLDILKDKWSPALQIRTVLLSIQALLS 115 (149)
Q Consensus 88 ic~~~l~~~W~p~~~i~~il~~i~~ll~ 115 (149)
+.-.|+|..++.+++.+.+..+.
T Consensus 65 -----~~~~w~~~ssL~~v~~qF~~~Le 87 (186)
T 3zqs_A 65 -----FCASWTPQSSLISIYSQFLAAIE 87 (186)
T ss_dssp -----CCCCCCTTCCHHHHHHHHHHHHH
T ss_pred -----cccccCCCccHHHHHHHHHHHHH
Confidence 11379999999888776665543
No 61
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.45 E-value=0.28 Score=32.52 Aligned_cols=68 Identities=16% Similarity=0.172 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHhhC-CC-CCeEE-EecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEe
Q 031986 6 LPRRIVKETQRLLSE-PA-PGISA-SPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFL 74 (149)
Q Consensus 6 ~~kRl~~E~~~l~~~-~~-~~~~~-~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~ 74 (149)
...+...|+..|+.- +. ..+.+ .....+...+.+.|.. .+..-..-.+.+.+.+|++||..+|.|...
T Consensus 8 ~~e~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~-~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~ 78 (128)
T 2ebk_A 8 MAEPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKA-EGFMDADIPLELVFHLPVNYPSCLPGISIN 78 (128)
T ss_dssp SCHHHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEEC-CTTTTCCCEEEEEEEECSSTTSSCCCCCCC
T ss_pred HHHHHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecC-CCCCCCCeEEEEEEECCCCCCCCCCeEEEE
Confidence 345677888888752 11 12322 2122234577788873 221111247899999999999999988643
No 62
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=94.25 E-value=0.74 Score=30.66 Aligned_cols=70 Identities=16% Similarity=0.172 Sum_probs=42.6
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEEecCC-----CCceeEEEEECCCCC--CCCCCEEEEEEECCCCCCCCCCeEEEee
Q 031986 5 NLPRRIVKETQRLLSEPAPGISASPAED-----NMRYFNVMILGPSQS--PYEGGVFKLELFLPEDYPMSAPKVRFLT 75 (149)
Q Consensus 5 ~~~kRl~~E~~~l~~~~~~~~~~~~~~~-----~~~~w~~~i~Gp~~t--py~gg~f~~~i~fp~~YP~~pP~v~f~~ 75 (149)
....+...|+..|+.-=+..+.+..... ....+.+.|. +.+. .-..-.+.+.|.||++||..+|.|.+.+
T Consensus 10 ~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 86 (137)
T 1ukx_A 10 SYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKN 86 (137)
T ss_dssp CHHHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEE
T ss_pred chHHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEec
Confidence 3456678888888763333343322111 1345666665 2221 0112468899999999999999998743
No 63
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=92.47 E-value=0.31 Score=33.42 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=20.9
Q ss_pred EEEEEEECCCCCCCCCCeEEEeec
Q 031986 53 VFKLELFLPEDYPMSAPKVRFLTK 76 (149)
Q Consensus 53 ~f~~~i~fp~~YP~~pP~v~f~~~ 76 (149)
.+.+.+.+|.+||..||.+...+.
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEECT
T ss_pred eEEEEEECCCCCCCCCCeEEEEcc
Confidence 688999999999999999987653
No 64
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=74.53 E-value=2.3 Score=19.63 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=17.6
Q ss_pred chHHHHHHHHHHHhhCCCCCe
Q 031986 5 NLPRRIVKETQRLLSEPAPGI 25 (149)
Q Consensus 5 ~~~kRl~~E~~~l~~~~~~~~ 25 (149)
+-+.||.-|+..++-++++|.
T Consensus 5 seldrlllelnavqhnppsg~ 25 (26)
T 3u3c_B 5 SELDRLLLELNAVQHNPPSGX 25 (26)
T ss_pred HHHHHHHHHHhhhccCCCCCC
Confidence 456899999999999998874
No 65
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=71.37 E-value=0.82 Score=29.81 Aligned_cols=33 Identities=6% Similarity=-0.024 Sum_probs=0.0
Q ss_pred hhCCCCCCcccHHHHHHHHHCHHHHHHHhccCc
Q 031986 114 LSAPNPDDPLSDNIAKHWKADETEAVETGMDPV 146 (149)
Q Consensus 114 l~~~~~~~~~n~~a~~~~~~~~~~f~~~~~~~v 146 (149)
|+-.....|.+.+.|++|.++++.|..+||-|-
T Consensus 18 ~~~~~~~~PQDA~VA~qy~~~~~~f~~TAr~WT 50 (108)
T 2cwb_A 18 LKGETTTEAVDAATAEKVFKQYANDNGVDGEWT 50 (108)
T ss_dssp ---------------------------------
T ss_pred ccCcccCCchhHHHHHHHHhchhcccccccccc
Confidence 344556678999999999999999999998664
No 66
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=36.92 E-value=38 Score=19.39 Aligned_cols=22 Identities=0% Similarity=0.016 Sum_probs=19.2
Q ss_pred ccHHHHHHHHHCHHHHHHHhcc
Q 031986 123 LSDNIAKHWKADETEAVETGMD 144 (149)
Q Consensus 123 ~n~~a~~~~~~~~~~f~~~~~~ 144 (149)
-|++.+++..+|+++|.+..-+
T Consensus 37 ~nP~l~~~I~~n~e~Fl~ll~e 58 (61)
T 2f4m_B 37 ENPQLLQQISQHQEHFIQMLNE 58 (61)
T ss_dssp HCHHHHHHHHHSHHHHHHHHTS
T ss_pred HCHHHHHHHHHCHHHHHHHHcc
Confidence 4899999999999999987654
No 67
>3s7v_A Major capsid protein VP1; jelly-roll, antiparallel beta sandwich, major capsid protein protein; 2.55A {Ki polyomavirus} PDB: 3s7x_A
Probab=36.01 E-value=77 Score=23.62 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=26.8
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcccCCC--cEEe
Q 031986 47 SPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLG--RICL 90 (149)
Q Consensus 47 tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~~~G--~ic~ 90 (149)
+--|...|..++.=.. ..||.+.|....--+.+|++| -+|.
T Consensus 197 skNENtRYFG~~tGG~---~TPPVl~ftNt~TTvLLDENGVGpLCk 239 (277)
T 3s7v_A 197 SRNDNCRYFGRVVGGA---ATPPVVSYGNNSTIPLLDENGIGILCL 239 (277)
T ss_dssp TSCCSEEEEEEEECCS---SCCCEEEEESSCCEECCCTTSCCEECT
T ss_pred CcCcCceeeEEecCCC---CCCCeEEecCceeEEEEcCCCcccccc
Confidence 3344444444444333 248999999988889999864 4774
No 68
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=33.76 E-value=43 Score=24.03 Aligned_cols=26 Identities=19% Similarity=0.540 Sum_probs=22.4
Q ss_pred CCCCEEEEEEECCCCCCC-----CCCeEEEe
Q 031986 49 YEGGVFKLELFLPEDYPM-----SAPKVRFL 74 (149)
Q Consensus 49 y~gg~f~~~i~fp~~YP~-----~pP~v~f~ 74 (149)
-+.|.|.|+-.+|--||. .||.|.|.
T Consensus 108 d~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~ 138 (209)
T 2bum_A 108 FGTGFWSFNTIKPGAVPGRKGSTQAPHISLI 138 (209)
T ss_dssp TTTCCEEEEEECCCCCBCSTTCBCCCCEEEE
T ss_pred CCCcEEEEEEEccCcccCCCCCccCcEEEEE
Confidence 456899999999999998 78888775
No 69
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=32.00 E-value=41 Score=19.98 Aligned_cols=22 Identities=0% Similarity=0.016 Sum_probs=19.1
Q ss_pred ccHHHHHHHHHCHHHHHHHhcc
Q 031986 123 LSDNIAKHWKADETEAVETGMD 144 (149)
Q Consensus 123 ~n~~a~~~~~~~~~~f~~~~~~ 144 (149)
-|++.+++..+|+++|.+...+
T Consensus 39 ~NPqL~q~I~~n~e~Fl~ll~e 60 (72)
T 1pve_A 39 ENPQLLQQISQHQEHFIQMLNE 60 (72)
T ss_dssp TCHHHHHHHHTTHHHHHHHHHS
T ss_pred HCHHHHHHHHHCHHHHHHHHcC
Confidence 5889999999999999987644
No 70
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=31.15 E-value=1.3e+02 Score=20.91 Aligned_cols=43 Identities=16% Similarity=0.318 Sum_probs=32.0
Q ss_pred CCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeec
Q 031986 32 DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 76 (149)
Q Consensus 32 ~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~ 76 (149)
+....|.+-+.|+.+.-...-+=++...+.++||. |...+..+
T Consensus 30 ~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~n--p~Rvv~~P 72 (175)
T 3rls_A 30 EHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN--PVRSIEAP 72 (175)
T ss_dssp TCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSS--CEEEECSS
T ss_pred CCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCC--CcEEEeCC
Confidence 45679999999987765555677788999999974 66665544
No 71
>1vps_A Polyomavirus VP1 pentamer; virus coat protein, oligosaccharide binding, virus assembly, acid, viral protein; HET: SIA GAL NAG; 1.90A {Murine polyomavirus} SCOP: b.121.6.1 PDB: 1vpn_A* 1cn3_A
Probab=30.99 E-value=1.2e+02 Score=22.77 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=27.8
Q ss_pred CCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcccCC--CcEEe
Q 031986 45 SQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL--GRICL 90 (149)
Q Consensus 45 ~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~~~--G~ic~ 90 (149)
+-+--|...|..++.=.. ..||.+.|....--+.+|++ |-+|.
T Consensus 199 DPskNENtRYFG~~tGG~---~TPpvl~ftNt~TtvLldEnGvGpLCk 243 (289)
T 1vps_A 199 DPAKNENTRYFGNYTGGT---TTPPVLQFTNTLTTVLLDENGVGPLCK 243 (289)
T ss_dssp CTTSCTTEEEEEEEECCS---SCCCEEEEESSCCEECCCTTSCCCEES
T ss_pred CCCcCcCceeeeeecCCC---CCCCeEEecCceeEEEEcCCCcccccc
Confidence 333444445554444433 35899999988888888876 55774
No 72
>1sid_A Polyomavirus coat protein VP1; icosahedral virus; HET: SIA GAL BGC; 3.65A {Mouse polyomavirus} SCOP: b.121.6.1 PDB: 1sie_A*
Probab=30.10 E-value=93 Score=24.28 Aligned_cols=47 Identities=17% Similarity=0.300 Sum_probs=30.7
Q ss_pred CeEEEecCCCCceeEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcccCCC--cEEe
Q 031986 24 GISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLG--RICL 90 (149)
Q Consensus 24 ~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~~~G--~ic~ 90 (149)
-+.-.|..++...+.+.+.|-.. .||.+.|....--+.+|++| -+|.
T Consensus 226 ~W~PDPskNENtRYFG~~tGG~~--------------------TPPVlqftNt~TTvLLDENGVGpLCk 274 (383)
T 1sid_A 226 IWHPDPAKNENTRYFGNYTGGTT--------------------TPPVLQFTNTLTTVLLDENGVGPLCK 274 (383)
T ss_dssp TEEECCCSSCSEEEEEEEECCSS--------------------CCCEEEEESSCEEECCCTTSCCCBCS
T ss_pred EECCCCCcCcCceeeEEecCCCC--------------------CCCeEEeccceeEEEEcCCCcccccc
Confidence 34445555555556666655333 48999999888888888764 4663
No 73
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=29.56 E-value=36 Score=17.71 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHhh
Q 031986 6 LPRRIVKETQRLLS 19 (149)
Q Consensus 6 ~~kRl~~E~~~l~~ 19 (149)
-.||+..|++++.+
T Consensus 29 ~~~~~~~~~~~~~~ 42 (42)
T 3g9r_A 29 KIKRIENEIKRIKK 42 (42)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 46899999998763
No 74
>3nxg_A Major capsid protein VP1; beta-sandwich jelly roll, viral protein; 1.95A {Jc polyomavirus} PDB: 3nxd_C 3bwr_A* 3bwq_A*
Probab=28.03 E-value=75 Score=23.64 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=28.8
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcccCC--CcEEe
Q 031986 44 PSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL--GRICL 90 (149)
Q Consensus 44 p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~~~--G~ic~ 90 (149)
|+-+--|...|..+++=.. ..||.+.|....--+.+|++ |-+|.
T Consensus 185 pDPskNENtRYfG~~tGG~---~TPPVlqftNt~TTvLLDENGVGpLCk 230 (272)
T 3nxg_A 185 PDPTRNENTRYFGTLTGGE---NVPPVLHITNTATTVLLDEFGVGPLCK 230 (272)
T ss_dssp ECTTSCTTEEEEEEEECST---TCCCEEEEESSCCEECCCTTSCCCBCG
T ss_pred CCCCcCcCceeEEEecCCC---CCCCeEEecCceeEEEEcCCCcccccc
Confidence 3444445555555554433 25899999998888899986 44774
No 75
>1sva_1 Simian virus 40; virus coat protein, icosahedral virus; 3.10A {Simian virus 40} SCOP: b.121.6.1
Probab=25.42 E-value=82 Score=24.41 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=19.1
Q ss_pred CCCeEEEeeccccCcccCCC--cEEe
Q 031986 67 SAPKVRFLTKIYHPNIDKLG--RICL 90 (149)
Q Consensus 67 ~pP~v~f~~~i~hpni~~~G--~ic~ 90 (149)
.||.+.|....--+.+|++| -+|.
T Consensus 230 TPPVlqftNt~TTvLLDENGVGpLCk 255 (361)
T 1sva_1 230 VPPVLHITNTATTVLLDEQGVGPLCK 255 (361)
T ss_dssp CCCEEEEETTCCEECCCTTSCCCBCS
T ss_pred CCCeEEecCceeEEEEcCCCcccccc
Confidence 48999999888888888764 4763
No 76
>4fmh_A VP1; viral capsid protein, jelly roll, encapsidation, receptor BI sialylated oligosaccharides, viral protein; HET: SIA GAL; 1.85A {Merkel cell polyomavirus} PDB: 4fmg_A* 4fmi_A* 4fmj_A*
Probab=24.52 E-value=1.3e+02 Score=22.59 Aligned_cols=44 Identities=16% Similarity=0.275 Sum_probs=30.6
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcccCCC--cEEe
Q 031986 44 PSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLG--RICL 90 (149)
Q Consensus 44 p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~~~G--~ic~ 90 (149)
|+-+--|...|..++.=... .||.+.|....--+..|++| -+|.
T Consensus 202 PDPsrNENtRYFG~~tGG~~---TPPVl~ftNt~TTvLLDENGVGpLCk 247 (289)
T 4fmh_A 202 PDPSKNENSRYYGSIQTGSQ---TPTVLQFSNTLTTVLLDENGVGPLCK 247 (289)
T ss_dssp ECTTSCTTEEEEEEEECSSS---CCCEEEEETTCCEECCCTTSCCCBCG
T ss_pred CCCCcCcCceeeeEecCCCC---CCCeEEecCceeEEEEcCCCccccee
Confidence 44455566666666665443 58999999888888888864 4774
No 77
>3iys_A Major capsid protein VP1; avian, polyomavirus, APV, icosahedral virus, virus; 11.30A {Budgerigar fledgling disease polyomavi}
Probab=23.07 E-value=46 Score=25.60 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=28.1
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeeccccCcccCCC--cEE
Q 031986 43 GPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLG--RIC 89 (149)
Q Consensus 43 Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~~~i~hpni~~~G--~ic 89 (149)
.|+-+--|+..|..+++=.. ..||.+.|....-.+.+|++| -+|
T Consensus 200 ~PDPskNENtRYFG~~tGG~---~TPPVlqftNt~TTvLLDENGVGpLC 245 (343)
T 3iys_A 200 CPDPAKNENTRYYGNLTGGP---ETPPVLAFTNTTTTILLDENGVGPLC 245 (343)
T ss_pred CCCCCcCcCceeeEEecCCC---CCCCeEEeccceeEEEEcCCCccccc
Confidence 34444455555555444333 358999999888888888764 466
No 78
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=21.33 E-value=58 Score=18.26 Aligned_cols=11 Identities=45% Similarity=1.032 Sum_probs=8.8
Q ss_pred EEEECCCCCCC
Q 031986 56 LELFLPEDYPM 66 (149)
Q Consensus 56 ~~i~fp~~YP~ 66 (149)
|+-.+|++||.
T Consensus 46 fR~k~pddy~~ 56 (56)
T 3kxt_A 46 FRHKLPDDYPI 56 (56)
T ss_dssp EEEECCTTCCC
T ss_pred eeeeCcCcCCC
Confidence 56688999984
No 79
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=21.24 E-value=43 Score=20.64 Aligned_cols=12 Identities=17% Similarity=0.296 Sum_probs=8.4
Q ss_pred chHHHHHHHHHH
Q 031986 5 NLPRRIVKETQR 16 (149)
Q Consensus 5 ~~~kRl~~E~~~ 16 (149)
+-+||+++||+=
T Consensus 62 sQLKRvQRdlrG 73 (87)
T 2rf4_B 62 SQLKRIQRDFKG 73 (87)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhcC
Confidence 357888888654
No 80
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=20.54 E-value=2e+02 Score=19.26 Aligned_cols=42 Identities=14% Similarity=0.208 Sum_probs=31.6
Q ss_pred CceeE--EEEECCCCCCCC-CCEEEEEEECCCCCCCCCCeEEEeecc
Q 031986 34 MRYFN--VMILGPSQSPYE-GGVFKLELFLPEDYPMSAPKVRFLTKI 77 (149)
Q Consensus 34 ~~~w~--~~i~Gp~~tpy~-gg~f~~~i~fp~~YP~~pP~v~f~~~i 77 (149)
...|. +.+.|+.+.... .-+=++...+.++|+ .|...+..+-
T Consensus 32 ~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~--np~r~v~~pP 76 (140)
T 3qrl_A 32 VRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFA--NPNRTFTDPP 76 (140)
T ss_dssp CEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSS--SCEEEECSTT
T ss_pred ccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCC--CCeEEEcCCC
Confidence 36898 888998888664 455668888999987 4877776653
No 81
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=20.36 E-value=60 Score=14.77 Aligned_cols=13 Identities=38% Similarity=0.547 Sum_probs=9.3
Q ss_pred chHHHHHHHHHHH
Q 031986 5 NLPRRIVKETQRL 17 (149)
Q Consensus 5 ~~~kRl~~E~~~l 17 (149)
+..|.|.+|+++-
T Consensus 8 nlqkkirkelkqr 20 (26)
T 1m46_B 8 NLQKKIRKELKQR 20 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3567888888763
Done!