BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031987
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1O5U|A Chain A, Crystal Structure Of A Duf861 Family Protein (Tm1112) From
Thermotoga Maritima At 1.83 A Resolution
pdb|1O5U|B Chain B, Crystal Structure Of A Duf861 Family Protein (Tm1112) From
Thermotoga Maritima At 1.83 A Resolution
Length = 101
Score = 79.0 bits (193), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 60 VKIEKNPPQSKLSELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYV-DGREGSFE 118
VKIEK P+ KL EL V WP W S+F W + ET Y+LEGKV V DG+ +
Sbjct: 15 VKIEKPTPE-KLKELSVEKWPIWEKEVSEFDWYYDTNETCYILEGKVEVTTEDGK--KYV 71
Query: 119 IGTGDLVVFPKGMKITWDVIEAVNKHYSL 147
I GDLV FPKG++ W V+E V KHY+L
Sbjct: 72 IEKGDLVTFPKGLRCRWKVLEPVRKHYNL 100
>pdb|1LKN|A Chain A, Solution Nmr Structure Of Protein Tm_1112 From Thermotoga
Maritima. Ontario Centre For Structural Proteomics
Target Tm1112_1_89; Northeast Structural Genomics
Consortium Target Vt74.
pdb|2K9Z|A Chain A, Nmr Structure Of The Protein Tm1112
Length = 89
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 60 VKIEKNPPQSKLSELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYV-DGREGSFE 118
VKIEK P+ KL EL V WP W S+F W + ET Y+LEGKV V DG+ +
Sbjct: 3 VKIEKPTPE-KLKELSVEKWPIWEKEVSEFDWYYDTNETCYILEGKVEVTTEDGK--KYV 59
Query: 119 IGTGDLVVFPKGMKITWDVIEAVNKHYSL 147
I GDLV FPKG++ W V+E V KHY+L
Sbjct: 60 IEKGDLVTFPKGLRCRWKVLEPVRKHYNL 88
>pdb|4AXO|A Chain A, Structure Of The Clostridium Difficile Eutq Protein
pdb|4AXO|B Chain B, Structure Of The Clostridium Difficile Eutq Protein
Length = 151
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 80 PKWGC-----PPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKIT 134
P+ GC + F WT E Y+++G + + +DGR+ S +G+L+ PKG KI
Sbjct: 64 PRLGCGMMEMKETTFDWTLNYDEIDYVIDGTLDIIIDGRKVS--ASSGELIFIPKGSKIQ 121
Query: 135 WDV 137
+ V
Sbjct: 122 FSV 124
>pdb|1JUH|A Chain A, Crystal Structure Of Quercetin 2,3-Dioxygenase
pdb|1JUH|B Chain B, Crystal Structure Of Quercetin 2,3-Dioxygenase
pdb|1JUH|C Chain C, Crystal Structure Of Quercetin 2,3-Dioxygenase
pdb|1JUH|D Chain D, Crystal Structure Of Quercetin 2,3-Dioxygenase
pdb|1GQG|A Chain A, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Diethyldithiocarbamate
pdb|1GQG|B Chain B, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Diethyldithiocarbamate
pdb|1GQG|C Chain C, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Diethyldithiocarbamate
pdb|1GQG|D Chain D, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Diethyldithiocarbamate
pdb|1GQH|A Chain A, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Kojic Acid
pdb|1GQH|B Chain B, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Kojic Acid
pdb|1GQH|C Chain C, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Kojic Acid
pdb|1GQH|D Chain D, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Kojic Acid
pdb|1H1I|A Chain A, Crystal Structure Of Quercetin 2,3-dioxygenase
Anaerobically Complexed With The Substrate Quercetn
pdb|1H1I|B Chain B, Crystal Structure Of Quercetin 2,3-dioxygenase
Anaerobically Complexed With The Substrate Quercetn
pdb|1H1I|C Chain C, Crystal Structure Of Quercetin 2,3-dioxygenase
Anaerobically Complexed With The Substrate Quercetn
pdb|1H1I|D Chain D, Crystal Structure Of Quercetin 2,3-dioxygenase
Anaerobically Complexed With The Substrate Quercetn
pdb|1H1M|A Chain A, Crystal Structure Of Quercetin 2,3-Dioxygenase
Anaerobically Complexed With The Substrate Kaempferol
pdb|1H1M|B Chain B, Crystal Structure Of Quercetin 2,3-Dioxygenase
Anaerobically Complexed With The Substrate Kaempferol
pdb|1H1M|C Chain C, Crystal Structure Of Quercetin 2,3-Dioxygenase
Anaerobically Complexed With The Substrate Kaempferol
pdb|1H1M|D Chain D, Crystal Structure Of Quercetin 2,3-Dioxygenase
Anaerobically Complexed With The Substrate Kaempferol
Length = 350
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 91 WTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITW 135
W+F + EG+V+V + G + E+G+GD+ P G++ +
Sbjct: 268 WSFPGACAFQVQEGRVVVQI-GDYAATELGSGDVAFIPGGVEFKY 311
>pdb|1Y3T|A Chain A, Crystal Structure Of Yxag, A Dioxygenase From Bacillus
Subtilis
pdb|1Y3T|B Chain B, Crystal Structure Of Yxag, A Dioxygenase From Bacillus
Subtilis
Length = 337
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 96 TETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYS 146
TET Y LEG++ ++ DG+E ++ GD + P ++ ++ HY+
Sbjct: 240 TETFYCLEGQMTMWTDGQE--IQLNPGDFLHVPANTVHSY----RLDSHYT 284
>pdb|3MYX|A Chain A, Crystal Structure Of A Pspto_0244 (Protein With Unknown
Func Belongs To Pfam Duf861 Family) From Pseudomonas
Syringae Pv Str. Dc3000 At 1.30 A Resolution
pdb|3MYX|B Chain B, Crystal Structure Of A Pspto_0244 (Protein With Unknown
Func Belongs To Pfam Duf861 Family) From Pseudomonas
Syringae Pv Str. Dc3000 At 1.30 A Resolution
Length = 238
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 97 ETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSL 147
E L+EG+V++ ++ S + TGD V +G W V K Y++
Sbjct: 188 ELXNLIEGRVVLSLE-NGSSLTVNTGDTVFVAQGAPCKWTSTGYVRKFYAV 237
>pdb|2VQA|A Chain A, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|B Chain B, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|C Chain C, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca
Length = 361
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 91 WTFTATETMYLLEGKVIVYVDGREGSFEIGT---GDLVVFPKG 130
W A E Y++EG+ + + EG EI G L FP+G
Sbjct: 69 WHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWYFPRG 111
>pdb|2H0V|A Chain A, Crystal Structure Of A Putative Quercetin 2,3-dioxygenase
(yxag, Bsu39980) From Bacillus Subtilis At 2.60 A
Resolution
pdb|2H0V|B Chain B, Crystal Structure Of A Putative Quercetin 2,3-dioxygenase
(yxag, Bsu39980) From Bacillus Subtilis At 2.60 A
Resolution
Length = 338
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 96 TETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYS 146
TET Y LEG+ + DG+E ++ GD + P ++ ++ HY+
Sbjct: 241 TETFYCLEGQXTXWTDGQE--IQLNPGDFLHVPANTVHSY----RLDSHYT 285
>pdb|2PYT|A Chain A, Crystal Structure Of A Putative Ethanolamine Utilization
Protein Q (Eutq, Stm2468) From Salmonella Typhimurium
Lt2 At 1.90 A Resolution
pdb|2PYT|B Chain B, Crystal Structure Of A Putative Ethanolamine Utilization
Protein Q (Eutq, Stm2468) From Salmonella Typhimurium
Lt2 At 1.90 A Resolution
Length = 133
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 89 FPWTFTATETMYLLEGKVIVYVDGREGSFEIG-TGDLVVFPKGMKITWDVIEAVNKHY 145
FPWT E +LEG++ V EG I GD+ PKG I + +V Y
Sbjct: 69 FPWTLNYDEIDXVLEGELHVR---HEGETXIAKAGDVXFIPKGSSIEFGTPTSVRFLY 123
>pdb|1YFO|A Chain A, Receptor Protein Tyrosine Phosphatase Alpha, Domain 1 From
Mouse
pdb|1YFO|B Chain B, Receptor Protein Tyrosine Phosphatase Alpha, Domain 1 From
Mouse
Length = 302
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 67 PQSKLSELGVTSWPKWGCPPS-----KFPWTFTATETMYLLEGKVIVYVD---GREGSF 117
PQ +++ TSWP +G P + KF A Y G ++V+ GR G+F
Sbjct: 186 PQRLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYA--GAIVVHCSAGVGRTGTF 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,248,391
Number of Sequences: 62578
Number of extensions: 118084
Number of successful extensions: 279
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 270
Number of HSP's gapped (non-prelim): 14
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)