Query 031987
Match_columns 149
No_of_seqs 174 out of 1072
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 08:05:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031987.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031987hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3450 Predicted enzyme of th 99.9 4.7E-26 1E-30 170.6 12.4 110 26-148 6-115 (116)
2 PF05899 Cupin_3: Protein of u 99.9 8.9E-24 1.9E-28 145.6 8.8 72 73-145 3-74 (74)
3 PF06249 EutQ: Ethanolamine ut 99.5 1.2E-13 2.7E-18 107.8 9.7 72 76-149 76-147 (152)
4 PRK15457 ethanolamine utilizat 99.3 6.8E-12 1.5E-16 103.8 9.7 70 76-147 156-225 (233)
5 COG4766 EutQ Ethanolamine util 99.3 1.1E-11 2.3E-16 97.6 9.0 71 75-147 98-168 (176)
6 PF07883 Cupin_2: Cupin domain 99.0 7.2E-09 1.6E-13 68.0 8.6 60 80-141 1-63 (71)
7 COG3837 Uncharacterized conser 98.9 3.6E-09 7.8E-14 83.3 8.1 71 70-145 38-114 (161)
8 COG0662 {ManC} Mannose-6-phosp 98.9 9.2E-09 2E-13 76.8 7.3 52 87-140 49-100 (127)
9 PRK13290 ectC L-ectoine syntha 98.8 4.9E-08 1.1E-12 73.6 9.8 66 82-148 40-108 (125)
10 PRK09943 DNA-binding transcrip 98.6 2.3E-07 5E-12 72.7 9.6 63 82-146 112-179 (185)
11 COG1917 Uncharacterized conser 98.5 6.1E-07 1.3E-11 66.4 8.5 60 80-141 46-108 (131)
12 PRK13264 3-hydroxyanthranilate 98.5 4.3E-07 9.2E-12 72.8 6.8 54 85-138 42-99 (177)
13 TIGR03037 anthran_nbaC 3-hydro 98.4 6.2E-07 1.3E-11 70.7 6.1 52 88-139 40-94 (159)
14 PF00190 Cupin_1: Cupin; Inte 98.4 5.7E-06 1.2E-10 62.4 10.8 76 71-147 28-118 (144)
15 PF02311 AraC_binding: AraC-li 98.4 3E-06 6.4E-11 59.9 8.6 57 88-146 15-74 (136)
16 TIGR03404 bicupin_oxalic bicup 98.4 5.1E-06 1.1E-10 72.6 11.7 67 78-144 246-320 (367)
17 smart00835 Cupin_1 Cupin. This 98.4 3.7E-06 8E-11 63.5 9.2 63 77-139 30-99 (146)
18 TIGR01479 GMP_PMI mannose-1-ph 98.3 2E-06 4.4E-11 76.8 8.7 62 82-145 381-447 (468)
19 PRK11171 hypothetical protein; 98.3 7.9E-06 1.7E-10 68.2 11.5 67 78-146 185-254 (266)
20 PRK11171 hypothetical protein; 98.3 6E-06 1.3E-10 68.9 10.6 66 79-146 63-134 (266)
21 TIGR03214 ura-cupin putative a 98.3 8.5E-06 1.8E-10 67.9 11.0 59 79-139 60-122 (260)
22 PRK15460 cpsB mannose-1-phosph 98.2 3.5E-06 7.7E-11 76.0 7.9 60 85-146 393-457 (478)
23 TIGR03404 bicupin_oxalic bicup 98.2 4.5E-05 9.7E-10 66.7 13.5 66 81-147 71-143 (367)
24 TIGR03214 ura-cupin putative a 98.1 4E-05 8.7E-10 63.9 10.5 69 76-146 178-249 (260)
25 PRK04190 glucose-6-phosphate i 98.0 3.3E-05 7.1E-10 62.3 8.7 70 77-146 68-153 (191)
26 PF01050 MannoseP_isomer: Mann 97.9 4.3E-05 9.3E-10 59.5 7.0 53 85-139 71-126 (151)
27 COG4297 Uncharacterized protei 97.7 7.6E-05 1.6E-09 58.4 5.5 59 75-133 42-103 (163)
28 PF06865 DUF1255: Protein of u 97.6 0.00023 5E-09 51.9 7.0 58 85-142 31-88 (94)
29 PRK13500 transcriptional activ 97.6 0.00022 4.7E-09 59.9 7.2 52 89-142 61-113 (312)
30 PF03079 ARD: ARD/ARD' family; 97.6 0.00018 4E-09 56.4 6.3 49 91-139 87-139 (157)
31 PRK10296 DNA-binding transcrip 97.6 0.00028 6.1E-09 57.5 7.4 45 90-136 37-82 (278)
32 PRK10579 hypothetical protein; 97.6 0.00043 9.4E-09 50.5 7.4 57 85-141 31-87 (94)
33 PRK13501 transcriptional activ 97.6 0.00025 5.5E-09 58.3 6.9 45 94-140 37-81 (290)
34 PLN00212 glutelin; Provisional 97.5 0.0029 6.2E-08 57.8 14.1 81 67-148 71-183 (493)
35 PRK10371 DNA-binding transcrip 97.5 0.00017 3.6E-09 60.6 5.6 53 89-143 39-92 (302)
36 PRK13502 transcriptional activ 97.5 0.00031 6.8E-09 57.2 7.0 51 90-142 32-83 (282)
37 PRK13503 transcriptional activ 97.4 0.00028 6E-09 57.1 5.0 50 89-140 28-78 (278)
38 TIGR02297 HpaA 4-hydroxyphenyl 97.4 0.00063 1.4E-08 55.4 6.9 50 90-141 37-88 (287)
39 COG3257 GlxB Uncharacterized p 97.3 0.0034 7.4E-08 52.6 10.8 100 40-146 29-134 (264)
40 COG2140 Thermophilic glucose-6 97.3 0.00093 2E-08 54.9 6.9 60 79-138 82-149 (209)
41 PF11699 CENP-C_C: Mif2/CENP-C 97.3 0.0049 1.1E-07 43.9 9.7 61 76-138 11-74 (85)
42 PF12852 Cupin_6: Cupin 97.1 0.00086 1.9E-08 52.0 5.1 44 96-139 36-79 (186)
43 COG4101 Predicted mannose-6-ph 97.1 0.0011 2.3E-08 50.9 4.9 57 78-134 43-107 (142)
44 PF12973 Cupin_7: ChrR Cupin-l 97.0 0.0048 1E-07 43.2 7.3 56 79-140 26-83 (91)
45 PF04209 HgmA: homogentisate 1 97.0 0.0029 6.3E-08 56.8 7.4 65 80-147 128-195 (424)
46 PRK05341 homogentisate 1,2-dio 96.8 0.004 8.8E-08 56.1 7.4 67 80-148 136-205 (438)
47 PF06052 3-HAO: 3-hydroxyanthr 96.8 0.0046 1E-07 48.6 6.7 45 90-134 47-94 (151)
48 TIGR02272 gentisate_1_2 gentis 96.8 0.0077 1.7E-07 52.5 8.4 51 94-147 269-319 (335)
49 TIGR01015 hmgA homogentisate 1 96.8 0.0055 1.2E-07 55.1 7.5 65 80-147 130-197 (429)
50 PLN02658 homogentisate 1,2-dio 96.6 0.0085 1.8E-07 54.0 7.4 67 80-148 129-198 (435)
51 KOG2107 Uncharacterized conser 96.5 0.0073 1.6E-07 48.4 5.7 49 91-139 88-140 (179)
52 COG3123 Uncharacterized protei 96.4 0.018 3.9E-07 41.7 6.7 65 75-141 23-87 (94)
53 PLN00212 glutelin; Provisional 96.2 0.0093 2E-07 54.5 5.5 55 80-134 351-412 (493)
54 PRK10572 DNA-binding transcrip 96.2 0.016 3.5E-07 47.4 6.5 44 94-139 48-91 (290)
55 COG1791 Uncharacterized conser 96.1 0.02 4.2E-07 46.2 6.2 50 91-140 90-143 (181)
56 PF06560 GPI: Glucose-6-phosph 96.0 0.015 3.1E-07 46.9 5.4 47 93-139 81-134 (182)
57 PF06339 Ectoine_synth: Ectoin 95.8 0.073 1.6E-06 40.8 8.2 64 86-149 44-109 (126)
58 PF02041 Auxin_BP: Auxin bindi 95.8 0.032 6.9E-07 44.3 6.1 65 75-139 40-115 (167)
59 TIGR02451 anti_sig_ChrR anti-s 95.6 0.025 5.4E-07 46.1 5.2 58 77-140 127-186 (215)
60 COG3508 HmgA Homogentisate 1,2 95.3 0.087 1.9E-06 46.9 8.0 66 80-147 128-196 (427)
61 PRK09685 DNA-binding transcrip 95.3 0.14 3.1E-06 41.9 8.8 46 97-144 73-118 (302)
62 TIGR00218 manA mannose-6-phosp 95.2 0.14 2.9E-06 43.4 8.5 42 94-137 252-294 (302)
63 PF05523 FdtA: WxcM-like, C-te 95.1 0.091 2E-06 39.6 6.5 50 89-138 48-100 (131)
64 PF14525 AraC_binding_2: AraC- 94.7 0.15 3.3E-06 37.5 6.7 47 98-146 58-104 (172)
65 TIGR02272 gentisate_1_2 gentis 94.5 0.091 2E-06 45.9 5.9 82 58-140 61-145 (335)
66 PRK00924 5-keto-4-deoxyuronate 94.5 0.16 3.5E-06 43.4 7.3 54 92-147 70-127 (276)
67 PRK15131 mannose-6-phosphate i 94.5 0.24 5.2E-06 43.9 8.6 37 94-132 338-374 (389)
68 PF04962 KduI: KduI/IolB famil 93.7 0.41 8.9E-06 40.3 8.1 67 79-147 29-105 (261)
69 PF08007 Cupin_4: Cupin superf 93.6 0.65 1.4E-05 39.6 9.3 60 80-139 117-200 (319)
70 PF11142 DUF2917: Protein of u 93.6 0.36 7.8E-06 32.3 6.2 56 82-137 2-58 (63)
71 KOG2757 Mannose-6-phosphate is 93.1 0.22 4.8E-06 44.5 5.7 51 94-146 352-403 (411)
72 PLN02288 mannose-6-phosphate i 93.1 0.13 2.8E-06 45.8 4.3 43 93-135 352-394 (394)
73 COG1482 ManA Phosphomannose is 91.8 0.95 2.1E-05 39.4 7.9 51 78-130 243-293 (312)
74 COG3435 Gentisate 1,2-dioxygen 91.3 0.57 1.2E-05 41.1 6.0 43 93-137 279-321 (351)
75 COG3435 Gentisate 1,2-dioxygen 91.1 0.36 7.9E-06 42.3 4.6 50 85-135 100-151 (351)
76 PF13621 Cupin_8: Cupin-like d 90.8 0.36 7.8E-06 37.8 4.0 61 78-138 132-232 (251)
77 PRK15186 AraC family transcrip 90.5 0.84 1.8E-05 38.8 6.3 46 93-139 36-81 (291)
78 PF09313 DUF1971: Domain of un 89.6 4.9 0.00011 28.4 8.6 62 79-140 3-75 (82)
79 PF06719 AraC_N: AraC-type tra 88.6 1.9 4.1E-05 33.0 6.4 45 93-139 21-65 (155)
80 PF14499 DUF4437: Domain of un 88.3 0.34 7.4E-06 40.9 2.3 37 93-131 54-91 (251)
81 PF04622 ERG2_Sigma1R: ERG2 an 88.1 1.9 4.2E-05 35.6 6.5 46 94-139 118-163 (216)
82 PF02678 Pirin: Pirin; InterP 88.1 1.7 3.7E-05 32.0 5.6 49 86-136 39-89 (107)
83 PF05726 Pirin_C: Pirin C-term 88.0 3.4 7.5E-05 29.5 7.1 48 93-144 18-66 (104)
84 COG3718 IolB Uncharacterized e 87.3 3.5 7.6E-05 35.1 7.7 62 79-140 31-102 (270)
85 COG3257 GlxB Uncharacterized p 86.4 1.4 3E-05 37.3 4.7 65 81-147 186-253 (264)
86 KOG0501 K+-channel KCNQ [Inorg 85.7 1.3 2.8E-05 42.3 4.7 59 66-125 553-618 (971)
87 PF00027 cNMP_binding: Cyclic 77.6 5.6 0.00012 25.6 4.3 33 94-126 16-52 (91)
88 KOG3995 3-hydroxyanthranilate 76.9 5.4 0.00012 33.7 4.9 44 90-133 47-93 (279)
89 PRK11396 hypothetical protein; 74.8 25 0.00053 28.7 8.1 54 86-140 46-100 (191)
90 PF05962 HutD: HutD; InterPro 72.9 21 0.00046 28.3 7.3 59 86-144 45-105 (184)
91 COG1741 Pirin-related protein 71.7 9.6 0.00021 32.5 5.3 48 85-133 52-102 (276)
92 PRK15044 transcriptional regul 70.7 10 0.00022 32.9 5.2 46 93-139 38-83 (295)
93 KOG3706 Uncharacterized conser 68.9 1.2 2.7E-05 41.3 -0.7 53 88-141 330-407 (629)
94 PF05962 HutD: HutD; InterPro 68.3 4.6 0.0001 32.1 2.6 38 94-133 134-171 (184)
95 COG3717 KduI 5-keto 4-deoxyuro 67.5 16 0.00034 31.3 5.6 53 93-147 73-129 (278)
96 PF02373 JmjC: JmjC domain, hy 67.2 7 0.00015 27.1 3.1 25 116-140 82-106 (114)
97 PF07385 DUF1498: Protein of u 66.0 14 0.0003 31.0 4.9 42 96-139 137-178 (225)
98 cd04715 BAH_Orc1p_like BAH, or 66.0 9.4 0.0002 30.0 3.8 41 77-131 2-42 (159)
99 PRK15185 transcriptional regul 64.6 16 0.00036 31.7 5.4 43 94-138 48-90 (309)
100 PRK13918 CRP/FNR family transc 63.5 35 0.00077 25.9 6.6 34 95-128 26-63 (202)
101 smart00100 cNMP Cyclic nucleot 58.8 25 0.00055 22.9 4.5 45 84-128 22-72 (120)
102 KOG1417 Homogentisate 1,2-diox 58.7 23 0.00051 31.4 5.3 47 94-142 154-200 (446)
103 TIGR00218 manA mannose-6-phosp 58.0 5.8 0.00012 33.5 1.4 19 116-134 152-170 (302)
104 cd00038 CAP_ED effector domain 57.4 21 0.00045 23.3 3.9 45 84-128 22-72 (115)
105 COG1482 ManA Phosphomannose is 57.4 9.5 0.00021 33.3 2.7 21 115-135 158-178 (312)
106 PRK15131 mannose-6-phosphate i 52.1 15 0.00032 32.7 3.0 20 116-135 238-257 (389)
107 PRK11753 DNA-binding transcrip 50.4 37 0.0008 25.9 4.8 46 82-127 23-74 (211)
108 KOG0498 K+-channel ERG and rel 49.0 33 0.00071 33.3 5.0 44 83-126 446-494 (727)
109 PF02237 BPL_C: Biotin protein 48.7 37 0.00079 21.0 3.7 23 103-126 25-47 (48)
110 PRK05467 Fe(II)-dependent oxyg 47.3 28 0.0006 28.9 3.8 33 104-136 130-162 (226)
111 PRK10202 ebgC cryptic beta-D-g 47.1 79 0.0017 24.2 6.1 30 115-144 106-135 (149)
112 PF06682 DUF1183: Protein of u 45.5 67 0.0015 28.1 6.1 74 28-109 33-119 (318)
113 COG3097 Uncharacterized protei 45.5 11 0.00023 28.0 1.0 28 101-129 16-43 (106)
114 KOG0500 Cyclic nucleotide-gate 44.9 32 0.00069 32.1 4.1 64 57-125 309-379 (536)
115 TIGR01221 rmlC dTDP-4-dehydror 43.5 1.6E+02 0.0035 23.3 7.6 62 86-147 53-131 (176)
116 cd06919 Asp_decarbox Aspartate 43.4 16 0.00036 27.4 1.7 30 99-129 56-88 (111)
117 PLN02868 acyl-CoA thioesterase 43.2 76 0.0016 27.8 6.1 64 63-127 16-84 (413)
118 TIGR03697 NtcA_cyano global ni 42.4 59 0.0013 24.3 4.8 34 94-127 10-47 (193)
119 PRK10402 DNA-binding transcrip 41.8 62 0.0013 25.5 4.9 45 83-127 35-85 (226)
120 PF00908 dTDP_sugar_isom: dTDP 41.1 1.8E+02 0.0039 23.0 8.3 53 95-147 67-131 (176)
121 PRK09391 fixK transcriptional 39.8 1E+02 0.0022 24.4 5.9 38 94-131 55-96 (230)
122 TIGR00223 panD L-aspartate-alp 38.4 21 0.00045 27.4 1.6 30 99-129 57-89 (126)
123 PRK05449 aspartate alpha-decar 37.7 22 0.00048 27.3 1.7 30 99-129 57-89 (126)
124 PF07385 DUF1498: Protein of u 37.1 51 0.0011 27.7 3.8 39 104-145 137-175 (225)
125 PRK12335 tellurite resistance 36.2 1.6E+02 0.0034 24.4 6.7 64 78-142 10-86 (287)
126 cd00320 cpn10 Chaperonin 10 Kd 35.5 77 0.0017 22.4 4.1 23 115-137 54-76 (93)
127 PRK09978 DNA-binding transcrip 34.5 1.3E+02 0.0028 25.6 6.0 38 99-140 10-47 (274)
128 COG3758 Uncharacterized protei 34.4 81 0.0017 25.9 4.5 54 86-139 51-105 (193)
129 PF02080 TrkA_C: TrkA-C domain 33.9 56 0.0012 20.7 3.0 30 95-127 27-56 (71)
130 PRK00364 groES co-chaperonin G 33.0 83 0.0018 22.4 4.0 17 115-131 55-71 (95)
131 KOG3416 Predicted nucleic acid 32.8 30 0.00065 26.8 1.7 32 104-136 48-79 (134)
132 COG3822 ABC-type sugar transpo 32.5 1.1E+02 0.0025 25.4 5.1 42 95-138 135-176 (225)
133 PRK09774 fec operon regulator 32.0 1E+02 0.0023 26.1 5.1 33 98-130 194-227 (319)
134 PF13759 2OG-FeII_Oxy_5: Putat 31.2 50 0.0011 23.0 2.6 21 116-136 67-87 (101)
135 COG1898 RfbC dTDP-4-dehydrorha 31.1 2.4E+02 0.0051 22.6 6.6 57 86-142 54-125 (173)
136 PRK09392 ftrB transcriptional 31.0 89 0.0019 24.4 4.3 43 84-126 35-82 (236)
137 PF14499 DUF4437: Domain of un 30.4 85 0.0018 26.6 4.2 43 93-135 189-231 (251)
138 PHA00663 hypothetical protein 29.4 49 0.0011 22.6 2.1 19 121-139 17-35 (68)
139 PHA00672 hypothetical protein 29.3 1.6E+02 0.0035 23.0 5.2 43 94-138 65-107 (152)
140 PLN02288 mannose-6-phosphate i 28.8 45 0.00097 29.9 2.4 20 116-135 252-271 (394)
141 COG2850 Uncharacterized conser 27.7 28 0.0006 31.3 0.9 18 117-134 181-198 (383)
142 PRK02946 aceK bifunctional iso 27.7 23 0.00049 33.5 0.3 35 91-125 473-515 (575)
143 PLN03192 Voltage-dependent pot 26.4 99 0.0021 29.7 4.4 66 60-126 379-449 (823)
144 PF02261 Asp_decarbox: Asparta 24.9 17 0.00037 27.6 -0.8 30 98-128 56-88 (116)
145 COG0664 Crp cAMP-binding prote 24.0 1.6E+02 0.0036 21.6 4.4 36 94-129 40-79 (214)
146 PHA02984 hypothetical protein; 23.8 3.7E+02 0.0079 23.4 6.9 47 94-140 90-140 (286)
147 MTH00261 ATP8 ATP synthase F0 23.7 62 0.0013 21.9 1.8 19 3-21 10-28 (68)
148 COG3128 PiuC Uncharacterized i 23.3 1.1E+02 0.0025 25.4 3.6 33 104-136 133-165 (229)
149 PRK04980 hypothetical protein; 23.2 59 0.0013 24.0 1.7 27 101-128 15-41 (102)
150 PRK11161 fumarate/nitrate redu 22.9 1.8E+02 0.0039 22.6 4.6 44 84-127 42-91 (235)
151 PF15312 JSRP: Junctional sarc 22.9 74 0.0016 21.8 2.1 22 2-23 10-31 (65)
152 COG3712 FecR Fe2+-dicitrate se 22.6 85 0.0018 27.5 2.9 35 93-128 192-228 (322)
153 COG5583 Uncharacterized small 22.5 1.2E+02 0.0027 20.0 3.0 26 104-130 24-49 (54)
154 TIGR03027 pepcterm_export puta 22.1 62 0.0013 24.7 1.8 17 115-131 148-164 (165)
155 PTZ00414 10 kDa heat shock pro 22.0 3.2E+02 0.007 19.9 5.7 29 103-131 46-75 (100)
156 TIGR03021 pilP_fam type IV pil 21.8 1.6E+02 0.0034 22.0 3.8 27 105-134 82-109 (119)
157 PRK14533 groES co-chaperonin G 21.7 1.7E+02 0.0037 20.8 3.9 23 116-138 51-73 (91)
158 TIGR02596 Verrucomicrobium spi 21.2 50 0.0011 26.9 1.2 37 56-92 56-94 (195)
159 PF09224 DUF1961: Domain of un 20.1 1.1E+02 0.0024 25.6 2.9 38 99-138 19-71 (218)
No 1
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=99.94 E-value=4.7e-26 Score=170.57 Aligned_cols=110 Identities=35% Similarity=0.574 Sum_probs=89.9
Q ss_pred ecCCCCCCCCcccCCCcccccccCCccccceeeeEEEeeCCChhhhhhcCCceeeeEecCCccccccCCCceEEEEEEeE
Q 031987 26 PIPKSKPTTPRVSKSKPVMASTTTTTAATAEIFGVKIEKNPPQSKLSELGVTSWPKWGCPPSKFPWTFTATETMYLLEGK 105 (149)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~ps~~~L~~lGv~~~giWe~~pg~f~~h~~~dE~~yVLEG~ 105 (149)
+|++.+-..++...+.|+...++.+...++.++. ...|...+|+|+|+||+|+++|+.+|+||||+|+
T Consensus 6 ~~~~~p~~~~~~~~~~p~~~i~G~p~~~t~~~~~------------~~dg~~~~GiWe~TpG~~r~~y~~~E~chil~G~ 73 (116)
T COG3450 6 IIDTVPLEEPELGDPAPEPLILGDPSAATWNLYG------------APDGQVETGIWECTPGKFRVTYDEDEFCHILEGR 73 (116)
T ss_pred eccCCccccccccccCCcccccCCccceehheee------------CCCCCeeEeEEEecCccceEEcccceEEEEEeeE
Confidence 4444444556666666666655555555444432 1257788999999999999999999999999999
Q ss_pred EEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEec
Q 031987 106 VIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLE 148 (149)
Q Consensus 106 v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi~ 148 (149)
++++.|+| +.++++|||+++||+|+.++|+|.|++||+|++.
T Consensus 74 v~~T~d~G-e~v~~~aGD~~~~~~G~~g~W~V~EtvrK~Yv~~ 115 (116)
T COG3450 74 VEVTPDGG-EPVEVRAGDSFVFPAGFKGTWEVLETVRKHYVIR 115 (116)
T ss_pred EEEECCCC-eEEEEcCCCEEEECCCCeEEEEEeeeeEEEEEEe
Confidence 99999999 9999999999999999999999999999999974
No 2
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=99.90 E-value=8.9e-24 Score=145.58 Aligned_cols=72 Identities=39% Similarity=0.751 Sum_probs=68.5
Q ss_pred hcCCceeeeEecCCccccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEE
Q 031987 73 ELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHY 145 (149)
Q Consensus 73 ~lGv~~~giWe~~pg~f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Y 145 (149)
.+|..++|+|+|+||+++++++.+|++|||||+++++.++| ++++++|||+++||+|++++|++.+++||+|
T Consensus 3 ~~g~~~~g~w~~~pg~~~~~~~~~E~~~vleG~v~it~~~G-~~~~~~aGD~~~~p~G~~~~w~v~~~vrK~Y 74 (74)
T PF05899_consen 3 PDGVFSAGVWECTPGKFPWPYPEDEFFYVLEGEVTITDEDG-ETVTFKAGDAFFLPKGWTGTWEVREPVRKVY 74 (74)
T ss_dssp CCTSEEEEEEEEECEEEEEEESSEEEEEEEEEEEEEEETTT-EEEEEETTEEEEE-TTEEEEEEEEEEEEEEE
T ss_pred CCCCEEEEEEEECCceeEeeCCCCEEEEEEEeEEEEEECCC-CEEEEcCCcEEEECCCCEEEEEECeEEEEcC
Confidence 46889999999999999999999999999999999999988 8999999999999999999999999999998
No 3
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=99.50 E-value=1.2e-13 Score=107.84 Aligned_cols=72 Identities=29% Similarity=0.481 Sum_probs=62.6
Q ss_pred CceeeeEecCCccccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEecC
Q 031987 76 VTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLEK 149 (149)
Q Consensus 76 v~~~giWe~~pg~f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi~~ 149 (149)
...+|+.+.+.+.|+|++.+||+.|||||++++..+|+ ++..+|||+++||+|.+++|.+.+..|-+|+.-|
T Consensus 76 ~l~~Gf~~le~~~f~wtl~YDEi~~VlEG~L~i~~~G~--~~~A~~GDvi~iPkGs~I~fst~~~a~~~Yv~yP 147 (152)
T PF06249_consen 76 RLSAGFMELEKTSFPWTLTYDEIKYVLEGTLEISIDGQ--TVTAKPGDVIFIPKGSTITFSTPDYARFFYVTYP 147 (152)
T ss_dssp SSEEEEEEEEEEEEEEE-SSEEEEEEEEEEEEEEETTE--EEEEETT-EEEE-TT-EEEEEEEEEEEEEEEEES
T ss_pred ceeeEEEEEeCCCccEEeecceEEEEEEeEEEEEECCE--EEEEcCCcEEEECCCCEEEEecCCCEEEEEEECC
Confidence 45589988888899999999999999999999998876 9999999999999999999999999999998754
No 4
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=99.34 E-value=6.8e-12 Score=103.78 Aligned_cols=70 Identities=26% Similarity=0.398 Sum_probs=64.1
Q ss_pred CceeeeEecCCccccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEe
Q 031987 76 VTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSL 147 (149)
Q Consensus 76 v~~~giWe~~pg~f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi 147 (149)
...+|+.+.+...|+|+++++|+.|||||+++++++|. ++.++|||+++||+|..++|......|.+|++
T Consensus 156 ~m~aGf~~~~~~sf~wtl~~dEi~YVLEGe~~l~IdG~--t~~l~pGDvlfIPkGs~~hf~tp~~aRflyV~ 225 (233)
T PRK15457 156 SMAAGFMQWENAFFPWTLNYDEIDMVLEGELHVRHEGE--TMIAKAGDVMFIPKGSSIEFGTPSSVRFLYVA 225 (233)
T ss_pred ceeeEEEEEecCccceeccceEEEEEEEeEEEEEECCE--EEEeCCCcEEEECCCCeEEecCCCCeeEEEEE
Confidence 45688888888999999999999999999999999876 99999999999999999999888888888875
No 5
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.31 E-value=1.1e-11 Score=97.55 Aligned_cols=71 Identities=30% Similarity=0.529 Sum_probs=65.6
Q ss_pred CCceeeeEecCCccccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEe
Q 031987 75 GVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSL 147 (149)
Q Consensus 75 Gv~~~giWe~~pg~f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi 147 (149)
+....|.-+..+..|+|+..+||+.|||||++.+..+|+ .+..+|||++++|||..+++.+....|..|+.
T Consensus 98 ~~l~aG~m~~~~~tf~wtl~yDe~d~VlEGrL~V~~~g~--tv~a~aGDvifiPKgssIefst~gea~flyvt 168 (176)
T COG4766 98 SRLGAGLMEMKNTTFPWTLNYDEIDYVLEGRLHVRIDGR--TVIAGAGDVIFIPKGSSIEFSTTGEAKFLYVT 168 (176)
T ss_pred CccccceeeeccccCcceecccceeEEEeeeEEEEEcCC--eEecCCCcEEEecCCCeEEEeccceEEEEEEE
Confidence 445578888888899999999999999999999999999 99999999999999999999999999999975
No 6
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=98.95 E-value=7.2e-09 Score=67.96 Aligned_cols=60 Identities=25% Similarity=0.313 Sum_probs=50.0
Q ss_pred eeEecCCccc-ccc--CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCce
Q 031987 80 PKWGCPPSKF-PWT--FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAV 141 (149)
Q Consensus 80 giWe~~pg~f-~~h--~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~v 141 (149)
|.|+..||.. ++| ...+|++||++|++++..+|+ .+.+++||++++|+|..+.+.....-
T Consensus 1 ~~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~~--~~~l~~Gd~~~i~~~~~H~~~n~~~~ 63 (71)
T PF07883_consen 1 GLVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVDGE--RVELKPGDAIYIPPGVPHQVRNPGDE 63 (71)
T ss_dssp EEEEEETTEEEEEEEESSEEEEEEEEESEEEEEETTE--EEEEETTEEEEEETTSEEEEEEESSS
T ss_pred CEEEECCCCCCCCEECCCCCEEEEEEECCEEEEEccE--EeEccCCEEEEECCCCeEEEEECCCC
Confidence 4677778874 344 344599999999999998877 99999999999999999999988653
No 7
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.95 E-value=3.6e-09 Score=83.28 Aligned_cols=71 Identities=27% Similarity=0.339 Sum_probs=57.4
Q ss_pred hhhhcCCceeeeEecCCcc----ccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCC--cEEEEEEcCceEE
Q 031987 70 KLSELGVTSWPKWGCPPSK----FPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKG--MKITWDVIEAVNK 143 (149)
Q Consensus 70 ~L~~lGv~~~giWe~~pg~----f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG--~~~tW~v~e~vrK 143 (149)
.|+++|+.- =..+||. +|||..+||++|||||+.++..+|+ .+.++|||++-||+| .-|.+.....+--
T Consensus 38 Gl~~fGvn~---~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~--e~~lrpGD~~gFpAG~~~aHhliN~s~~~~ 112 (161)
T COG3837 38 GLKRFGVNL---EIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDGG--ETRLRPGDSAGFPAGVGNAHHLINRSDVIL 112 (161)
T ss_pred Chhhcccce---EEeCCCCccccccccccCceEEEEEcCceEEEECCe--eEEecCCceeeccCCCcceeEEeecCCceE
Confidence 456666543 4455665 4788899999999999999999999 899999999999999 7788887766555
Q ss_pred EE
Q 031987 144 HY 145 (149)
Q Consensus 144 ~Y 145 (149)
.|
T Consensus 113 ~y 114 (161)
T COG3837 113 RY 114 (161)
T ss_pred EE
Confidence 54
No 8
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.86 E-value=9.2e-09 Score=76.81 Aligned_cols=52 Identities=25% Similarity=0.334 Sum_probs=47.1
Q ss_pred ccccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987 87 SKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA 140 (149)
Q Consensus 87 g~f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~ 140 (149)
..++.|++.||++|||||++.++.+|. .+.+++||++++|+|..|.-+....
T Consensus 49 ~~~~~H~~~dE~~~Vl~G~g~v~~~~~--~~~v~~gd~~~iP~g~~H~~~N~G~ 100 (127)
T COG0662 49 ISLHHHHHRDEHWYVLEGTGKVTIGGE--EVEVKAGDSVYIPAGTPHRVRNTGK 100 (127)
T ss_pred cCcccccCcceEEEEEeeEEEEEECCE--EEEecCCCEEEECCCCcEEEEcCCC
Confidence 345667779999999999999999987 9999999999999999999998876
No 9
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=98.81 E-value=4.9e-08 Score=73.63 Aligned_cols=66 Identities=14% Similarity=0.077 Sum_probs=53.3
Q ss_pred EecCCccc-cccC-CCceEEEEEEeEEEEE-ECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEec
Q 031987 82 WGCPPSKF-PWTF-TATETMYLLEGKVIVY-VDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLE 148 (149)
Q Consensus 82 We~~pg~f-~~h~-~~dE~~yVLEG~v~vt-~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi~ 148 (149)
+.-+||.. +.|+ +.+|++|||+|+++++ .+|+ +.+.++|||+++||+|..|.|+..++.+-..++.
T Consensus 40 ~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g-~~~~L~aGD~i~~~~~~~H~~~N~e~~~~l~v~t 108 (125)
T PRK13290 40 TTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATG-EVHPIRPGTMYALDKHDRHYLRAGEDMRLVCVFN 108 (125)
T ss_pred EEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCC-EEEEeCCCeEEEECCCCcEEEEcCCCEEEEEEEC
Confidence 55667743 3343 3579999999999999 6644 5999999999999999999999998888776654
No 10
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=98.65 E-value=2.3e-07 Score=72.70 Aligned_cols=63 Identities=13% Similarity=0.246 Sum_probs=49.7
Q ss_pred EecCCccc---cccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC--ceEEEEE
Q 031987 82 WGCPPSKF---PWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE--AVNKHYS 146 (149)
Q Consensus 82 We~~pg~f---~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e--~vrK~Yv 146 (149)
+.-.|+.. ..|...+|++||++|+++++++|. .+.+++||+++||.+..|.|.... +.+-..+
T Consensus 112 ~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~~~~--~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~ 179 (185)
T PRK09943 112 ETYQPGTTTGERIKHQGEEIGTVLEGEIVLTINGQ--DYHLVAGQSYAINTGIPHSFSNTSAGICRIISA 179 (185)
T ss_pred EEccCCCCcccccccCCcEEEEEEEeEEEEEECCE--EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEE
Confidence 44455543 234567999999999999999887 899999999999999999999964 3444433
No 11
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.53 E-value=6.1e-07 Score=66.36 Aligned_cols=60 Identities=27% Similarity=0.532 Sum_probs=51.8
Q ss_pred eeEecCCccc-cccCC--CceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCce
Q 031987 80 PKWGCPPSKF-PWTFT--ATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAV 141 (149)
Q Consensus 80 giWe~~pg~f-~~h~~--~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~v 141 (149)
..+.-+||.. +||.+ .++++|||+|+++++.++ +.+++++||++++|+|..|.+...+.-
T Consensus 46 ~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g--~~~~l~~Gd~i~ip~g~~H~~~a~~~~ 108 (131)
T COG1917 46 VLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEG--EKKELKAGDVIIIPPGVVHGLKAVEDE 108 (131)
T ss_pred EEEEECCCcccccccCCCcceEEEEEecEEEEEecC--CceEecCCCEEEECCCCeeeeccCCCC
Confidence 3577788876 67765 689999999999999994 599999999999999999999887665
No 12
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.47 E-value=4.3e-07 Score=72.77 Aligned_cols=54 Identities=19% Similarity=0.357 Sum_probs=45.1
Q ss_pred CCc-cccccC-CCceEEEEEEeEEEEEECCcc--eEEEEcCCcEEEEcCCcEEEEEEc
Q 031987 85 PPS-KFPWTF-TATETMYLLEGKVIVYVDGRE--GSFEIGTGDLVVFPKGMKITWDVI 138 (149)
Q Consensus 85 ~pg-~f~~h~-~~dE~~yVLEG~v~vt~dgg~--~~~~i~aGD~v~~PkG~~~tW~v~ 138 (149)
.|+ ++.||+ +.||+||+|+|++++.+.+++ ..+.+++||++++|+|+.|.+.-.
T Consensus 42 Gpn~r~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r~ 99 (177)
T PRK13264 42 GPNARTDFHYDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQRE 99 (177)
T ss_pred cCCcccccccCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCccC
Confidence 566 567886 589999999999999994332 488999999999999999999654
No 13
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.41 E-value=6.2e-07 Score=70.74 Aligned_cols=52 Identities=17% Similarity=0.267 Sum_probs=43.3
Q ss_pred cccccCC-CceEEEEEEeEEEEEECCcc--eEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987 88 KFPWTFT-ATETMYLLEGKVIVYVDGRE--GSFEIGTGDLVVFPKGMKITWDVIE 139 (149)
Q Consensus 88 ~f~~h~~-~dE~~yVLEG~v~vt~dgg~--~~~~i~aGD~v~~PkG~~~tW~v~e 139 (149)
+++||.+ .||+||+|+|++.+.+.+++ ..+.+++||++++|+|+.|.|.-.+
T Consensus 40 R~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r~~ 94 (159)
T TIGR03037 40 RTDFHDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQRPA 94 (159)
T ss_pred CcccccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCcccccCC
Confidence 3568864 89999999999999775532 3799999999999999999997543
No 14
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=98.39 E-value=5.7e-06 Score=62.38 Aligned_cols=76 Identities=22% Similarity=0.212 Sum_probs=53.7
Q ss_pred hhhcCCceeeeEecCCccc---cccCCCceEEEEEEeEEEEEE--CCc------ceEEE--EcCCcEEEEcCCcEEEEEE
Q 031987 71 LSELGVTSWPKWGCPPSKF---PWTFTATETMYLLEGKVIVYV--DGR------EGSFE--IGTGDLVVFPKGMKITWDV 137 (149)
Q Consensus 71 L~~lGv~~~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~--dgg------~~~~~--i~aGD~v~~PkG~~~tW~v 137 (149)
+..++......-..+||.. +|| +.+|++||++|++++.. .++ ..... +++||++++|+|+.+.+..
T Consensus 28 ~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n 106 (144)
T PF00190_consen 28 LLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAGHPHWIIN 106 (144)
T ss_dssp HHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT-EEEEEE
T ss_pred eecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeeccceeEEEEc
Confidence 3344433444555578876 577 89999999999999654 221 12344 9999999999999999999
Q ss_pred c--CceEEEEEe
Q 031987 138 I--EAVNKHYSL 147 (149)
Q Consensus 138 ~--e~vrK~Yvi 147 (149)
. +....++.+
T Consensus 107 ~~~~~~~~~~~f 118 (144)
T PF00190_consen 107 DGDDEALVLIIF 118 (144)
T ss_dssp CSSSSEEEEEEE
T ss_pred CCCCCCEEEEEE
Confidence 9 567776665
No 15
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.38 E-value=3e-06 Score=59.86 Aligned_cols=57 Identities=23% Similarity=0.431 Sum_probs=42.8
Q ss_pred ccccc-CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC--ceEEEEE
Q 031987 88 KFPWT-FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE--AVNKHYS 146 (149)
Q Consensus 88 ~f~~h-~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e--~vrK~Yv 146 (149)
.+.+| .+.-|++||++|++++..+|+ .+.++|||++++|+|..+.+.... +.+..++
T Consensus 15 ~~~~h~h~~~~i~~v~~G~~~~~~~~~--~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i 74 (136)
T PF02311_consen 15 EFPPHWHDFYEIIYVLSGEGTLHIDGQ--EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWI 74 (136)
T ss_dssp SEEEETT-SEEEEEEEEE-EEEEETTE--EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEE
T ss_pred ccCCEECCCEEEEEEeCCEEEEEECCE--EEEEECCEEEEecCCccEEEecCCCCCEEEEEE
Confidence 44555 458999999999999999998 899999999999999999999998 5665554
No 16
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=98.38 E-value=5.1e-06 Score=72.62 Aligned_cols=67 Identities=18% Similarity=0.252 Sum_probs=53.4
Q ss_pred eeeeEecCCccc---cccCCCceEEEEEEeEEEEEECC---cceEEEEcCCcEEEEcCCcEEEEEEcC--ceEEE
Q 031987 78 SWPKWGCPPSKF---PWTFTATETMYLLEGKVIVYVDG---REGSFEIGTGDLVVFPKGMKITWDVIE--AVNKH 144 (149)
Q Consensus 78 ~~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~dg---g~~~~~i~aGD~v~~PkG~~~tW~v~e--~vrK~ 144 (149)
+.......||.. |||...+|++|||+|++++++.+ .++...+++||+++||+|..|..+..+ +++-.
T Consensus 246 s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL 320 (367)
T TIGR03404 246 AAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFL 320 (367)
T ss_pred EEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEE
Confidence 345677788875 56777899999999999999742 226789999999999999999999874 44433
No 17
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=98.36 E-value=3.7e-06 Score=63.54 Aligned_cols=63 Identities=24% Similarity=0.258 Sum_probs=50.0
Q ss_pred ceeeeEecCCccc-cccC--CCceEEEEEEeEEEEEECCcc----eEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987 77 TSWPKWGCPPSKF-PWTF--TATETMYLLEGKVIVYVDGRE----GSFEIGTGDLVVFPKGMKITWDVIE 139 (149)
Q Consensus 77 ~~~giWe~~pg~f-~~h~--~~dE~~yVLEG~v~vt~dgg~----~~~~i~aGD~v~~PkG~~~tW~v~e 139 (149)
.....+..+||.. ..|+ ..+|++||++|++++..++.+ ..+.+++||+++||+|..|.+...+
T Consensus 30 ~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~ 99 (146)
T smart00835 30 ISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSG 99 (146)
T ss_pred eEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCC
Confidence 3456678888875 3444 478999999999999986541 2788999999999999999998753
No 18
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=98.35 E-value=2e-06 Score=76.75 Aligned_cols=62 Identities=10% Similarity=0.111 Sum_probs=51.4
Q ss_pred EecCCccc---cccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC--ceEEEE
Q 031987 82 WGCPPSKF---PWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE--AVNKHY 145 (149)
Q Consensus 82 We~~pg~f---~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e--~vrK~Y 145 (149)
+...||.. ++|.+.+|++|||+|+++++.+|. ++.+++||+++||+|..|.|.... +++-..
T Consensus 381 ~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg~--~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~ 447 (468)
T TIGR01479 381 ITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGDE--TLLLTENESTYIPLGVIHRLENPGKIPLELIE 447 (468)
T ss_pred EEECCCCccCccccCCCceEEEEEeeEEEEEECCE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEE
Confidence 55567763 356678999999999999999988 899999999999999999999864 454443
No 19
>PRK11171 hypothetical protein; Provisional
Probab=98.34 E-value=7.9e-06 Score=68.23 Aligned_cols=67 Identities=18% Similarity=0.189 Sum_probs=54.1
Q ss_pred eeeeEecCCccc-cc--cCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEE
Q 031987 78 SWPKWGCPPSKF-PW--TFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYS 146 (149)
Q Consensus 78 ~~giWe~~pg~f-~~--h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yv 146 (149)
..-.++..||.. .. +...+|.+|||+|+++++++|+ .+.+++||+++|+.+..+.|.....-.-.|.
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~~~--~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl 254 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLNND--WVEVEAGDFIWMRAYCPQACYAGGPGPFRYL 254 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEECCE--EEEeCCCCEEEECCCCCEEEECCCCCcEEEE
Confidence 445577889864 33 4567899999999999999887 9999999999999999999998754333343
No 20
>PRK11171 hypothetical protein; Provisional
Probab=98.33 E-value=6e-06 Score=68.94 Aligned_cols=66 Identities=18% Similarity=0.290 Sum_probs=51.3
Q ss_pred eeeEecCCccc---cccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEc--CceEEEEE
Q 031987 79 WPKWGCPPSKF---PWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVI--EAVNKHYS 146 (149)
Q Consensus 79 ~giWe~~pg~f---~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~--e~vrK~Yv 146 (149)
...++..||.- +.|. ..+|++|||+|+++++.+|. ++.+.+||+++||+|..|+|+.. ++.+-.++
T Consensus 63 ~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~g~--~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v 134 (266)
T PRK11171 63 QYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLEGK--THALSEGGYAYLPPGSDWTLRNAGAEDARFHWI 134 (266)
T ss_pred EEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEECCE--EEEECCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence 34566677653 2333 45899999999999999887 89999999999999999999975 34444433
No 21
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.31 E-value=8.5e-06 Score=67.91 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=47.7
Q ss_pred eeeEecCCccc---cc-cCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987 79 WPKWGCPPSKF---PW-TFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE 139 (149)
Q Consensus 79 ~giWe~~pg~f---~~-h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e 139 (149)
...++..|+.- +. |-..+|++|||+|+++++.+|. .+++++||.++||+|..++|+...
T Consensus 60 ~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~g~--~~~L~~Gd~~y~pa~~~H~~~N~~ 122 (260)
T TIGR03214 60 QYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAEGE--THELREGGYAYLPPGSKWTLANAQ 122 (260)
T ss_pred EEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEECCE--EEEECCCCEEEECCCCCEEEEECC
Confidence 44566667543 12 2335899999999999999887 899999999999999999998764
No 22
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=98.24 E-value=3.5e-06 Score=75.99 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=50.4
Q ss_pred CCccc---cccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEc--CceEEEEE
Q 031987 85 PPSKF---PWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVI--EAVNKHYS 146 (149)
Q Consensus 85 ~pg~f---~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~--e~vrK~Yv 146 (149)
.||.. ++|.+.+|+.||++|+++++++|. .+.+++||+++||+|..|+|+.. ++++-..+
T Consensus 393 ~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg~--~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V 457 (478)
T PRK15460 393 KPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGD--IKLLGENESIYIPLGATHCLENPGKIPLDLIEV 457 (478)
T ss_pred CCCCcCCcCCCCCCceEEEEEeeEEEEEECCE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence 46643 567778899999999999999998 89999999999999999999986 45554443
No 23
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=98.19 E-value=4.5e-05 Score=66.74 Aligned_cols=66 Identities=20% Similarity=0.416 Sum_probs=48.7
Q ss_pred eEecCCccc---cccCCCceEEEEEEeEEEEEECCc-ceEE--EEcCCcEEEEcCCcEEEEEEcCc-eEEEEEe
Q 031987 81 KWGCPPSKF---PWTFTATETMYLLEGKVIVYVDGR-EGSF--EIGTGDLVVFPKGMKITWDVIEA-VNKHYSL 147 (149)
Q Consensus 81 iWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~dgg-~~~~--~i~aGD~v~~PkG~~~tW~v~e~-vrK~Yvi 147 (149)
..+..||.. ||| ..+|++||++|+++++..+. ++.+ .+++||+++||+|..|.+...+. .+-.+++
T Consensus 71 ~~~l~pG~~~~~HwH-~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~g~~H~~~n~~~~~~~l~vf 143 (367)
T TIGR03404 71 NMRLEPGAIRELHWH-KEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPGIPHSLQGLDEGCEFLLVF 143 (367)
T ss_pred EEEEcCCCCCCcccC-CCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECCCCeEEEEECCCCeEEEEEe
Confidence 345566653 566 46899999999999999531 1455 49999999999999999998743 4433333
No 24
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.08 E-value=4e-05 Score=63.88 Aligned_cols=69 Identities=16% Similarity=0.096 Sum_probs=55.1
Q ss_pred CceeeeEecCCcccc---ccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEE
Q 031987 76 VTSWPKWGCPPSKFP---WTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYS 146 (149)
Q Consensus 76 v~~~giWe~~pg~f~---~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yv 146 (149)
.+...+-.-+||... .|...+|..|||||+..+.++|. .+.+++||++++|+|..+.......-.-.|.
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~g~--~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l 249 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNLDNN--WVPVEAGDYIWMGAYCPQACYAGGRGEFRYL 249 (260)
T ss_pred CcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEECCE--EEEecCCCEEEECCCCCEEEEecCCCcEEEE
Confidence 344566788888763 33446789999999999999887 9999999999999999999999755444443
No 25
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=98.03 E-value=3.3e-05 Score=62.34 Aligned_cols=70 Identities=16% Similarity=0.111 Sum_probs=52.0
Q ss_pred ceeeeEecCCccc---------cccC--CCceEEEEEEeEEEEEECCc---ceEEEEcCCcEEEEcCCcEEEEEEcC--c
Q 031987 77 TSWPKWGCPPSKF---------PWTF--TATETMYLLEGKVIVYVDGR---EGSFEIGTGDLVVFPKGMKITWDVIE--A 140 (149)
Q Consensus 77 ~~~giWe~~pg~f---------~~h~--~~dE~~yVLEG~v~vt~dgg---~~~~~i~aGD~v~~PkG~~~tW~v~e--~ 140 (149)
..+|+-...||.. |+|. +..|++|||+|++.+..++. .....++|||++++|+|+.|.-.... +
T Consensus 68 L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~iN~G~ep 147 (191)
T PRK04190 68 LNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSVNTGDEP 147 (191)
T ss_pred eEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeEECCCCC
Confidence 3466666677764 4554 34699999999999998754 13689999999999999999988754 5
Q ss_pred eEEEEE
Q 031987 141 VNKHYS 146 (149)
Q Consensus 141 vrK~Yv 146 (149)
++...+
T Consensus 148 l~fl~v 153 (191)
T PRK04190 148 LVFLAC 153 (191)
T ss_pred EEEEEE
Confidence 554443
No 26
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=97.90 E-value=4.3e-05 Score=59.49 Aligned_cols=53 Identities=25% Similarity=0.421 Sum_probs=46.5
Q ss_pred CCcc---ccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987 85 PPSK---FPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE 139 (149)
Q Consensus 85 ~pg~---f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e 139 (149)
.||. +..|.+.+|..+|++|++.++.+|. ...+++||.+++|+|..|+-+..+
T Consensus 71 ~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~~--~~~~~~g~sv~Ip~g~~H~i~n~g 126 (151)
T PF01050_consen 71 NPGKRLSLQYHHHRSEHWTVVSGTAEVTLDDE--EFTLKEGDSVYIPRGAKHRIENPG 126 (151)
T ss_pred cCCCccceeeecccccEEEEEeCeEEEEECCE--EEEEcCCCEEEECCCCEEEEECCC
Confidence 3565 3467788999999999999999888 999999999999999999998753
No 27
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=97.71 E-value=7.6e-05 Score=58.38 Aligned_cols=59 Identities=22% Similarity=0.506 Sum_probs=48.6
Q ss_pred CCcee-eeEecCCcccc-ccCCCceEEEEEEeEEEEEECCc-ceEEEEcCCcEEEEcCCcEE
Q 031987 75 GVTSW-PKWGCPPSKFP-WTFTATETMYLLEGKVIVYVDGR-EGSFEIGTGDLVVFPKGMKI 133 (149)
Q Consensus 75 Gv~~~-giWe~~pg~f~-~h~~~dE~~yVLEG~v~vt~dgg-~~~~~i~aGD~v~~PkG~~~ 133 (149)
....| |.|+.....|+ +|.+..|+..|++|++.+.+.|. +...++++||++.+|+|+-|
T Consensus 42 ~~~gW~gsW~g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~el~v~~GDvlliPAGvGH 103 (163)
T COG4297 42 KANGWFGSWRGGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQELEVGEGDVLLIPAGVGH 103 (163)
T ss_pred hhcCCcccccccccccccccCCcceEEEEecceeEEEecCCCCceeeecCCCEEEEecCccc
Confidence 33346 78998887774 67789999999999999999652 27899999999999999764
No 28
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=97.65 E-value=0.00023 Score=51.87 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=46.1
Q ss_pred CCccccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceE
Q 031987 85 PPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVN 142 (149)
Q Consensus 85 ~pg~f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vr 142 (149)
.||.+.......|.|-|++|++++...|..+-.++.+|+.+.+|++..-.-++.+...
T Consensus 31 ~pGeY~F~T~~~E~M~vvsG~l~V~lpg~~ew~~~~aGesF~VpanssF~v~v~~~~~ 88 (94)
T PF06865_consen 31 LPGEYTFGTSAPERMEVVSGELEVKLPGEDEWQTYSAGESFEVPANSSFDVKVKEPTA 88 (94)
T ss_dssp -SECEEEEESS-EEEEEEESEEEEEETT-SS-EEEETT-EEEE-TTEEEEEEESS-EE
T ss_pred eeeEEEEcCCCCEEEEEEEeEEEEEcCCCcccEEeCCCCeEEECCCCeEEEEECccee
Confidence 4788888889999999999999999999866889999999999999999998887653
No 29
>PRK13500 transcriptional activator RhaR; Provisional
Probab=97.60 E-value=0.00022 Score=59.90 Aligned_cols=52 Identities=17% Similarity=0.278 Sum_probs=45.6
Q ss_pred ccccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceE
Q 031987 89 FPWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVN 142 (149)
Q Consensus 89 f~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vr 142 (149)
+++|+ +.-|++||++|++.+.++|. .+.+.+||++++++|..|.++..+...
T Consensus 61 ~~~H~H~~~el~~v~~G~g~~~v~~~--~~~l~~Gdl~~I~~~~~H~~~~~~~~~ 113 (312)
T PRK13500 61 FAEHTHDFCELVIVWRGNGLHVLNDR--PYRITRGDLFYIHADDKHSYASVNDLV 113 (312)
T ss_pred CCccccceEEEEEEEcCeEEEEECCE--EEeecCCeEEEECCCCeecccccCCce
Confidence 45664 47899999999999999998 999999999999999999998766543
No 30
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=97.59 E-value=0.00018 Score=56.41 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=35.4
Q ss_pred cc-CCCceEEEEEEeEEEEEECCcc-e--EEEEcCCcEEEEcCCcEEEEEEcC
Q 031987 91 WT-FTATETMYLLEGKVIVYVDGRE-G--SFEIGTGDLVVFPKGMKITWDVIE 139 (149)
Q Consensus 91 ~h-~~~dE~~yVLEG~v~vt~dgg~-~--~~~i~aGD~v~~PkG~~~tW~v~e 139 (149)
.| ...+|+-||++|++-+.+.+++ . .+.+.+||++++|+|+.|.++..+
T Consensus 87 EH~H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~ 139 (157)
T PF03079_consen 87 EHTHEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGE 139 (157)
T ss_dssp -EEESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEEST
T ss_pred eEecChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCC
Confidence 45 3589999999999998885432 2 257999999999999999999876
No 31
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=97.58 E-value=0.00028 Score=57.52 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=39.9
Q ss_pred cccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEE
Q 031987 90 PWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWD 136 (149)
Q Consensus 90 ~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~ 136 (149)
++|+ +.-|+.||++|.+++.++|. .+.+++||++++|+|..|...
T Consensus 37 ~~H~H~~~ei~~v~~G~~~~~i~~~--~~~l~~g~l~~i~p~~~H~~~ 82 (278)
T PRK10296 37 GLHQHDYYEFTLVLTGRYYQEINGK--RVLLERGDFVFIPLGSHHQSF 82 (278)
T ss_pred CCcccccEEEEEEEeceEEEEECCE--EEEECCCcEEEeCCCCcccee
Confidence 4554 57899999999999999998 899999999999999999654
No 32
>PRK10579 hypothetical protein; Provisional
Probab=97.57 E-value=0.00043 Score=50.48 Aligned_cols=57 Identities=16% Similarity=0.290 Sum_probs=50.2
Q ss_pred CCccccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCce
Q 031987 85 PPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAV 141 (149)
Q Consensus 85 ~pg~f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~v 141 (149)
-||.+.......|.|-|++|++++...|..+-.++++|+.+.+|++..-.-++.+..
T Consensus 31 ~pGey~F~T~~~E~MeivsG~l~V~Lpg~~ew~~~~aG~sF~VpanssF~l~v~~~t 87 (94)
T PRK10579 31 AEGEYTFSTAEPEEMTVISGALNVLLPGATDWQVYEAGEVFNVPGHSEFHLQVAEPT 87 (94)
T ss_pred eeeEEEEcCCCcEEEEEEeeEEEEECCCCcccEEeCCCCEEEECCCCeEEEEECcce
Confidence 367777777899999999999999999985678999999999999999888888654
No 33
>PRK13501 transcriptional activator RhaR; Provisional
Probab=97.56 E-value=0.00025 Score=58.35 Aligned_cols=45 Identities=11% Similarity=0.285 Sum_probs=42.0
Q ss_pred CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987 94 TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA 140 (149)
Q Consensus 94 ~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~ 140 (149)
++-|+.|+++|++++.++|. .+.+.+||++++|+|..|.|+..+.
T Consensus 37 ~~~ei~~i~~G~~~~~i~~~--~~~l~~g~~~~I~p~~~H~~~~~~~ 81 (290)
T PRK13501 37 QFCEIVIVWRGNGLHVLNDH--PYRITCGDVFYIQAADHHSYESVHD 81 (290)
T ss_pred cceeEEEEecCceEEEECCe--eeeecCCeEEEEcCCCcccccccCC
Confidence 68999999999999999998 9999999999999999999987654
No 34
>PLN00212 glutelin; Provisional
Probab=97.55 E-value=0.0029 Score=57.78 Aligned_cols=81 Identities=17% Similarity=0.257 Sum_probs=57.9
Q ss_pred ChhhhhhcCCceeeeEecCCccc--cccCCCceEEEEEEeEEEEEEC--Ccce--------------------------E
Q 031987 67 PQSKLSELGVTSWPKWGCPPSKF--PWTFTATETMYLLEGKVIVYVD--GREG--------------------------S 116 (149)
Q Consensus 67 s~~~L~~lGv~~~giWe~~pg~f--~~h~~~dE~~yVLEG~v~vt~d--gg~~--------------------------~ 116 (149)
....|.-.|+. ...-..+|+.+ +.+.+..+++||++|+..+..- |..+ .
T Consensus 71 ~~~q~~caGv~-~~R~~i~p~gL~lP~y~na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~~d~hqkv 149 (493)
T PLN00212 71 KNEQFQCTGVF-VIRRVIEPQGLLLPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKFRDEHQKI 149 (493)
T ss_pred CChhhcccceE-EEEEEecCCcccCccccCCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccccccccccccccccc
Confidence 34445555765 44566678887 3445799999999999988653 2111 1
Q ss_pred EEEcCCcEEEEcCCcEEEEEEcCc--eEEEEEec
Q 031987 117 FEIGTGDLVVFPKGMKITWDVIEA--VNKHYSLE 148 (149)
Q Consensus 117 ~~i~aGD~v~~PkG~~~tW~v~e~--vrK~Yvi~ 148 (149)
..++.||++.||+|..+=|...+. +..+++++
T Consensus 150 ~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d 183 (493)
T PLN00212 150 HQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYD 183 (493)
T ss_pred eEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEe
Confidence 589999999999999999998755 44556554
No 35
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=97.53 E-value=0.00017 Score=60.61 Aligned_cols=53 Identities=11% Similarity=0.118 Sum_probs=46.0
Q ss_pred ccccCC-CceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEE
Q 031987 89 FPWTFT-ATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNK 143 (149)
Q Consensus 89 f~~h~~-~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK 143 (149)
.+||++ +-|++|+++|++.+..+|. .+.+.+||+++++.|..|.+...+..+.
T Consensus 39 ~~~HwH~e~Ei~yv~~G~~~~~i~g~--~~~l~~Gd~ili~s~~~H~~~~~~~~~~ 92 (302)
T PRK10371 39 PTSHWHGQVEVNVPFDGDVEYLINNE--KVQINQGHITLFWACTPHQLTDPGNCRS 92 (302)
T ss_pred CCCCccccEEEEEecCCcEEEEECCE--EEEEcCCcEEEEecCCcccccccCCCce
Confidence 356765 7899999999999999988 9999999999999999999877666543
No 36
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.52 E-value=0.00031 Score=57.23 Aligned_cols=51 Identities=16% Similarity=0.232 Sum_probs=44.0
Q ss_pred cccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceE
Q 031987 90 PWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVN 142 (149)
Q Consensus 90 ~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vr 142 (149)
++|+ ++-|++|+++|+++++.+|. .+.+++||++++|+|..|.+...+...
T Consensus 32 ~~H~h~~~~l~~v~~G~~~~~i~~~--~~~l~~g~l~li~~~~~H~~~~~~~~~ 83 (282)
T PRK13502 32 AEHTHEFCELVMVWRGNGLHVLNER--PYRITRGDLFYIRAEDKHSYTSVNDLV 83 (282)
T ss_pred CccccceEEEEEEecCcEEEEECCE--EEeecCCcEEEECCCCcccccccCCce
Confidence 4443 47899999999999999988 899999999999999999998765543
No 37
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.38 E-value=0.00028 Score=57.08 Aligned_cols=50 Identities=14% Similarity=0.284 Sum_probs=44.1
Q ss_pred ccccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987 89 FPWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA 140 (149)
Q Consensus 89 f~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~ 140 (149)
+++|+ +.-|++|+++|.+++.++|. .+.+++||++++|+|..|.|+..+.
T Consensus 28 ~~~H~H~~~ei~~v~~G~~~~~i~~~--~~~l~~g~~~~i~~~~~h~~~~~~~ 78 (278)
T PRK13503 28 FPEHHHDFHEIVIVEHGTGIHVFNGQ--PYTLSGGTVCFVRDHDRHLYEHTDN 78 (278)
T ss_pred ccccccCceeEEEEecCceeeEecCC--cccccCCcEEEECCCccchhhhccC
Confidence 34554 58999999999999999998 8999999999999999999987654
No 38
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=97.36 E-value=0.00063 Score=55.38 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=43.3
Q ss_pred cccCC--CceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCce
Q 031987 90 PWTFT--ATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAV 141 (149)
Q Consensus 90 ~~h~~--~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~v 141 (149)
++|++ .-|++|+++|.+.+..+|. .+.+++||++++|+|..|.|......
T Consensus 37 ~~H~H~~~~~l~~~~~G~~~~~~~~~--~~~l~~g~~~ii~~~~~H~~~~~~~~ 88 (287)
T TIGR02297 37 PVHFHDRYYQLHYLTEGSIALQLDEH--EYSEYAPCFFLTPPSVPHGFVTDLDA 88 (287)
T ss_pred CCcccccceeEEEEeeCceEEEECCE--EEEecCCeEEEeCCCCccccccCCCc
Confidence 44544 4799999999999999887 89999999999999999999876554
No 39
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=97.33 E-value=0.0034 Score=52.56 Aligned_cols=100 Identities=18% Similarity=0.148 Sum_probs=64.7
Q ss_pred CCcccccccCCccccceeeeEEEeeCCChhhhhhcCCceeeeEecCCcc-cc--c-cCCCceEEEEEEeEEEEEECCcce
Q 031987 40 SKPVMASTTTTTAATAEIFGVKIEKNPPQSKLSELGVTSWPKWGCPPSK-FP--W-TFTATETMYLLEGKVIVYVDGREG 115 (149)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~V~i~~~ps~~~L~~lGv~~~giWe~~pg~-f~--~-h~~~dE~~yVLEG~v~vt~dgg~~ 115 (149)
|+..|+++ ...+-|+-..+.|-..|-..--+.|- -.+-+..|+. -. . .-..+-+.||+||+++++.+|+
T Consensus 29 pk~~~iVt--s~Lp~w~~tr~wilsrP~~Gf~~tF~---qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G~-- 101 (264)
T COG3257 29 PKGVMIVT--SILPFWENTRAWILSRPLSGFAATFV---QYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEGK-- 101 (264)
T ss_pred cCCcEEEE--eecCCCCCceEEEEeccccchhhhhh---hheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcCe--
Confidence 44556554 34556777666666665333222222 1223343333 11 1 1246789999999999999998
Q ss_pred EEEEcCCcEEEEcCCcEEEEE--EcCceEEEEE
Q 031987 116 SFEIGTGDLVVFPKGMKITWD--VIEAVNKHYS 146 (149)
Q Consensus 116 ~~~i~aGD~v~~PkG~~~tW~--v~e~vrK~Yv 146 (149)
+..+++|+-+++|+|...+.+ ..++.|.++.
T Consensus 102 th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~ 134 (264)
T COG3257 102 THALREGGYAYLPPGSGWTLRNAQKEDSRFHWI 134 (264)
T ss_pred EEEeccCCeEEeCCCCcceEeeccCCceEEEEE
Confidence 999999999999999999888 4455555543
No 40
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=97.27 E-value=0.00093 Score=54.93 Aligned_cols=60 Identities=20% Similarity=0.225 Sum_probs=46.2
Q ss_pred eeeEecCCccc---cccCCCce--EEEEEEeEEEEEECCcc---eEEEEcCCcEEEEcCCcEEEEEEc
Q 031987 79 WPKWGCPPSKF---PWTFTATE--TMYLLEGKVIVYVDGRE---GSFEIGTGDLVVFPKGMKITWDVI 138 (149)
Q Consensus 79 ~giWe~~pg~f---~~h~~~dE--~~yVLEG~v~vt~dgg~---~~~~i~aGD~v~~PkG~~~tW~v~ 138 (149)
.+....+||+. |||-..|| +.|+|+|++++.+...+ .+..++|||++++|+|+-|.=..+
T Consensus 82 g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~ 149 (209)
T COG2140 82 GAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTINT 149 (209)
T ss_pred ceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeecC
Confidence 34566777854 56655555 99999999999987542 466789999999999998876665
No 41
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=97.26 E-value=0.0049 Score=43.93 Aligned_cols=61 Identities=23% Similarity=0.275 Sum_probs=46.1
Q ss_pred CceeeeEecCCcccc--cc-CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEc
Q 031987 76 VTSWPKWGCPPSKFP--WT-FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVI 138 (149)
Q Consensus 76 v~~~giWe~~pg~f~--~h-~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~ 138 (149)
-..+|.-+..|+... .+ .+..-++||++|.+++++.+. +..++.||.+.+|+|-.-..+..
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~~--~f~v~~G~~F~VP~gN~Y~i~N~ 74 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIHET--SFVVTKGGSFQVPRGNYYSIKNI 74 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEETTE--EEEEETT-EEEE-TT-EEEEEE-
T ss_pred CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEEcCc--EEEEeCCCEEEECCCCEEEEEEC
Confidence 456888999998874 23 467788999999999999998 89999999999999987766663
No 42
>PF12852 Cupin_6: Cupin
Probab=97.13 E-value=0.00086 Score=52.05 Aligned_cols=44 Identities=20% Similarity=0.364 Sum_probs=37.9
Q ss_pred ceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987 96 TETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE 139 (149)
Q Consensus 96 dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e 139 (149)
--+.+|++|++.+..++++++..+.+||++++|+|..|+.....
T Consensus 36 ~~fh~V~~G~~~l~~~~~~~~~~L~~GDivllp~g~~H~l~~~~ 79 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPGGGEPIRLEAGDIVLLPRGTAHVLSSDP 79 (186)
T ss_pred eEEEEEECCeEEEEEcCCCCeEEecCCCEEEEcCCCCeEeCCCC
Confidence 56889999999999887337999999999999999999885443
No 43
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=97.07 E-value=0.0011 Score=50.94 Aligned_cols=57 Identities=23% Similarity=0.373 Sum_probs=43.1
Q ss_pred eeeeEe----cCCccc---cccCCCceEEEEEEeEEEEEECCc-ceEEEEcCCcEEEEcCCcEEE
Q 031987 78 SWPKWG----CPPSKF---PWTFTATETMYLLEGKVIVYVDGR-EGSFEIGTGDLVVFPKGMKIT 134 (149)
Q Consensus 78 ~~giWe----~~pg~f---~~h~~~dE~~yVLEG~v~vt~dgg-~~~~~i~aGD~v~~PkG~~~t 134 (149)
..++|- ..||.- +.|-..+-.+|||+|++...-.+. ++..+.+|||++++|+|..+.
T Consensus 43 as~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~rLE~ha~~~pGDf~YiPpgVPHq 107 (142)
T COG4101 43 ASGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNRLEEHAEVGPGDFFYIPPGVPHQ 107 (142)
T ss_pred cceeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccceeeeEEecCCCeEEcCCCCCCc
Confidence 345553 456654 344556778999999999998763 256789999999999999875
No 44
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=96.99 E-value=0.0048 Score=43.19 Aligned_cols=56 Identities=23% Similarity=0.312 Sum_probs=40.5
Q ss_pred eeeEecCCcc-cccc-CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987 79 WPKWGCPPSK-FPWT-FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA 140 (149)
Q Consensus 79 ~giWe~~pg~-f~~h-~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~ 140 (149)
..+-+.+||. ++.| ....|.+|||||++. ++++ .+.+||.++.|+|..+++.+.+.
T Consensus 26 ~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~--d~~~----~~~~G~~~~~p~g~~h~~~s~~g 83 (91)
T PF12973_consen 26 VSLLRLEPGASLPRHRHPGGEEILVLEGELS--DGDG----RYGAGDWLRLPPGSSHTPRSDEG 83 (91)
T ss_dssp EEEEEE-TTEEEEEEEESS-EEEEEEECEEE--ETTC----EEETTEEEEE-TTEEEEEEESSC
T ss_pred EEEEEECCCCCcCccCCCCcEEEEEEEEEEE--ECCc----cCCCCeEEEeCCCCccccCcCCC
Confidence 3444555665 4666 456788899999988 3444 46999999999999999998765
No 45
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=96.95 E-value=0.0029 Score=56.82 Aligned_cols=65 Identities=15% Similarity=0.284 Sum_probs=46.0
Q ss_pred eeEecCCcc---ccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEe
Q 031987 80 PKWGCPPSK---FPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSL 147 (149)
Q Consensus 80 giWe~~pg~---f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi 147 (149)
.+|.+..+- +-..-+.||++++-+|++++..+=| ...+++||.++||+|++.+++..++.| .|++
T Consensus 128 ~~y~~~~sM~~~~f~NaDGD~Li~~q~G~l~l~Te~G--~L~v~pGd~~VIPRG~~~rv~l~~p~r-gyi~ 195 (424)
T PF04209_consen 128 HVYAANASMDDRAFRNADGDELIFPQQGSLRLETEFG--RLDVRPGDYVVIPRGTRFRVELPGPAR-GYII 195 (424)
T ss_dssp EEEEE-S---SEEEEESSEEEEEEEEES-EEEEETTE--EEEE-TTEEEEE-TT--EEEE-SSSEE-EEEE
T ss_pred EEEEcCCCCCCcceEcCCCCEEEEEEECCEEEEecCe--eEEEcCCeEEEECCeeEEEEEeCCCce-EEEE
Confidence 457777543 2235689999999999999999999 899999999999999999999997654 4544
No 46
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=96.84 E-value=0.004 Score=56.09 Aligned_cols=67 Identities=13% Similarity=0.307 Sum_probs=54.0
Q ss_pred eeEecCCcc---ccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEec
Q 031987 80 PKWGCPPSK---FPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLE 148 (149)
Q Consensus 80 giWe~~pg~---f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi~ 148 (149)
.++.+...- +-...+.||++++-+|++.+..+=| ...+++||.++||+|+..+++..+.--+-|+++
T Consensus 136 ~~y~~n~sM~~~~f~NaDGD~Livpq~G~l~i~TEfG--~L~v~pgei~VIPRG~~frv~l~~gp~rgyi~E 205 (438)
T PRK05341 136 HLYAANRSMQDRYFYNADGELLIVPQQGRLRLATELG--VLDVEPGEIAVIPRGVKFRVELPDGPARGYVCE 205 (438)
T ss_pred EEEeCCCCcccceeecCCCCEEEEEEeCCEEEEEecc--ceEecCCCEEEEcCccEEEEecCCCCeeEEEEE
Confidence 567777542 2234579999999999999999999 899999999999999999999866444566653
No 47
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=96.81 E-value=0.0046 Score=48.59 Aligned_cols=45 Identities=22% Similarity=0.497 Sum_probs=31.0
Q ss_pred cccCC-CceEEEEEEeEEEEEE--CCcceEEEEcCCcEEEEcCCcEEE
Q 031987 90 PWTFT-ATETMYLLEGKVIVYV--DGREGSFEIGTGDLVVFPKGMKIT 134 (149)
Q Consensus 90 ~~h~~-~dE~~yVLEG~v~vt~--dgg~~~~~i~aGD~v~~PkG~~~t 134 (149)
++|++ .+|+||-++|...+.+ +|+...+.+++||++.+|+++.|.
T Consensus 47 DyHine~eE~FyQ~kG~m~Lkv~e~g~~kdi~I~EGe~fLLP~~vpHs 94 (151)
T PF06052_consen 47 DYHINETEEFFYQLKGDMCLKVVEDGKFKDIPIREGEMFLLPANVPHS 94 (151)
T ss_dssp SEEE-SS-EEEEEEES-EEEEEEETTEEEEEEE-TTEEEEE-TT--EE
T ss_pred ccccCCcceEEEEEeCcEEEEEEeCCceEEEEeCCCcEEecCCCCCCC
Confidence 56754 7999999999988766 444466789999999999999875
No 48
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=96.77 E-value=0.0077 Score=52.55 Aligned_cols=51 Identities=18% Similarity=0.350 Sum_probs=43.7
Q ss_pred CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEe
Q 031987 94 TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSL 147 (149)
Q Consensus 94 ~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi 147 (149)
....++||+||+...+++|+ .++.++||+|++|.+..+++...+... .|.+
T Consensus 269 T~s~Vf~VieG~G~s~ig~~--~~~W~~gD~f~vPsW~~~~h~a~~da~-Lf~~ 319 (335)
T TIGR02272 269 TDATVFCVVEGRGQVRIGDA--VFRFSPKDVFVVPSWHPVRFEASDDAV-LFSF 319 (335)
T ss_pred cccEEEEEEeCeEEEEECCE--EEEecCCCEEEECCCCcEecccCCCeE-EEEe
Confidence 46899999999999999888 899999999999999999988776643 4443
No 49
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=96.75 E-value=0.0055 Score=55.09 Aligned_cols=65 Identities=14% Similarity=0.269 Sum_probs=52.9
Q ss_pred eeEecCCcc---ccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEe
Q 031987 80 PKWGCPPSK---FPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSL 147 (149)
Q Consensus 80 giWe~~pg~---f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi 147 (149)
.++.|...- +-...+.||++++-+|++.+..+=| ...+++||.++||+|+..+++..++.| .|++
T Consensus 130 ~iy~~~~sM~~~~f~NaDGD~Livpq~G~l~i~TEfG--~L~v~pgei~VIPRG~~frv~l~gp~r-gyi~ 197 (429)
T TIGR01015 130 HIYLCNASMENRAFYNADGDFLIVPQQGALLITTEFG--RLLVEPNEICVIPRGVRFRVTVLEPAR-GYIC 197 (429)
T ss_pred EEEeCCCCcccceeeccCCCEEEEEEeCcEEEEEecc--ceEecCCCEEEecCccEEEEeeCCCce-EEEE
Confidence 567777542 1234579999999999999999999 899999999999999999999887655 4544
No 50
>PLN02658 homogentisate 1,2-dioxygenase
Probab=96.56 E-value=0.0085 Score=54.01 Aligned_cols=67 Identities=16% Similarity=0.303 Sum_probs=53.9
Q ss_pred eeEecCCcc---ccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEec
Q 031987 80 PKWGCPPSK---FPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLE 148 (149)
Q Consensus 80 giWe~~pg~---f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi~ 148 (149)
.++.|...- +-...+.||++++-+|++.+..+=| ...+++||.++||+|++.+.+..+.--..|+++
T Consensus 129 ~iy~~n~sM~~~~f~NaDGD~Livpq~G~l~i~TEfG--~L~v~pgei~VIPRG~~frv~l~~gp~rgyv~E 198 (435)
T PLN02658 129 HMYVANKSMDDCAFCNADGDFLIVPQQGRLWIKTELG--KLQVSPGEIVVIPRGFRFAVDLPDGPSRGYVLE 198 (435)
T ss_pred EEEeCCCCCccceeecCCCCEEEEEEeCCEEEEEecc--ceEecCCCEEEecCccEEEEecCCCCeeEEEEe
Confidence 567777542 2234579999999999999999999 899999999999999998888766445566653
No 51
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=96.46 E-value=0.0073 Score=48.41 Aligned_cols=49 Identities=24% Similarity=0.426 Sum_probs=40.3
Q ss_pred ccC-CCceEEEEEEeEEEEEECCcce---EEEEcCCcEEEEcCCcEEEEEEcC
Q 031987 91 WTF-TATETMYLLEGKVIVYVDGREG---SFEIGTGDLVVFPKGMKITWDVIE 139 (149)
Q Consensus 91 ~h~-~~dE~~yVLEG~v~vt~dgg~~---~~~i~aGD~v~~PkG~~~tW~v~e 139 (149)
-|. ..+|+-|+|+|..-+.+.+.++ .+-+..||++++|+|.-|+++++.
T Consensus 88 Ehlh~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~ 140 (179)
T KOG2107|consen 88 EHLHEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTP 140 (179)
T ss_pred HhcCchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCc
Confidence 354 4799999999999999876521 345899999999999999999874
No 52
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.38 E-value=0.018 Score=41.68 Aligned_cols=65 Identities=22% Similarity=0.340 Sum_probs=53.4
Q ss_pred CCceeeeEecCCccccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCce
Q 031987 75 GVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAV 141 (149)
Q Consensus 75 Gv~~~giWe~~pg~f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~v 141 (149)
|..+.|+ ..||++..-...-|.|.|+.|.+++...|..+-.++.||+.+.+|.+..-...|.++.
T Consensus 23 g~asVGV--m~~geytFgTa~~E~Mtvv~Gal~v~lpgs~dWq~~~~Ge~F~VpgnS~F~lqVaeat 87 (94)
T COG3123 23 GRASVGV--MAPGEYTFGTAAPEEMTVVSGALTVLLPGSDDWQVYTAGEVFNVPGNSEFDLQVAEAT 87 (94)
T ss_pred CceeEEE--EeceeEEeccCCceEEEEEeeEEEEEcCCCcccEEecCCceEEcCCCCeEEEEEeeee
Confidence 4444444 3466666666789999999999999999887888999999999999999988888764
No 53
>PLN00212 glutelin; Provisional
Probab=96.17 E-value=0.0093 Score=54.49 Aligned_cols=55 Identities=18% Similarity=0.399 Sum_probs=42.0
Q ss_pred eeEecCCccc---cccCCCceEEEEEEeEEEEEECC--cceEE--EEcCCcEEEEcCCcEEE
Q 031987 80 PKWGCPPSKF---PWTFTATETMYLLEGKVIVYVDG--REGSF--EIGTGDLVVFPKGMKIT 134 (149)
Q Consensus 80 giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~dg--g~~~~--~i~aGD~v~~PkG~~~t 134 (149)
..-...++.. |||....|++||++|++.+.+-+ |...+ ++++||+++||+|..+.
T Consensus 351 ~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v~ 412 (493)
T PLN00212 351 TRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAVL 412 (493)
T ss_pred EEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeEE
Confidence 3344456654 57778999999999999998743 22344 69999999999999883
No 54
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=96.17 E-value=0.016 Score=47.42 Aligned_cols=44 Identities=23% Similarity=0.428 Sum_probs=38.6
Q ss_pred CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987 94 TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE 139 (149)
Q Consensus 94 ~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e 139 (149)
..-++.++++|++.+..+++ .+.+++||++++|+|..+.+....
T Consensus 48 ~~~~i~~~~~G~~~~~~~~~--~~~~~~g~~i~i~p~~~h~~~~~~ 91 (290)
T PRK10572 48 KGYILNLTIRGQGVIFNGGR--AFVCRPGDLLLFPPGEIHHYGRHP 91 (290)
T ss_pred cceEEEEEEeccEEEecCCe--eEecCCCCEEEECCCCceeeccCC
Confidence 45688999999999998887 899999999999999999876543
No 55
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=96.06 E-value=0.02 Score=46.18 Aligned_cols=50 Identities=24% Similarity=0.361 Sum_probs=40.7
Q ss_pred cc-CCCceEEEEEEeEEEEEECCcc---eEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987 91 WT-FTATETMYLLEGKVIVYVDGRE---GSFEIGTGDLVVFPKGMKITWDVIEA 140 (149)
Q Consensus 91 ~h-~~~dE~~yVLEG~v~vt~dgg~---~~~~i~aGD~v~~PkG~~~tW~v~e~ 140 (149)
.| ...+|+-|+|+|+..+.+-+.+ -.+.+.+||++.+|+|..|.++..+.
T Consensus 90 EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~ 143 (181)
T COG1791 90 EHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTES 143 (181)
T ss_pred HhccCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCC
Confidence 45 4589999999999998875441 23468899999999999999998865
No 56
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=96.03 E-value=0.015 Score=46.91 Aligned_cols=47 Identities=21% Similarity=0.276 Sum_probs=32.2
Q ss_pred CCCceEEEEEEeEEEEEECCcc-------eEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987 93 FTATETMYLLEGKVIVYVDGRE-------GSFEIGTGDLVVFPKGMKITWDVIE 139 (149)
Q Consensus 93 ~~~dE~~yVLEG~v~vt~dgg~-------~~~~i~aGD~v~~PkG~~~tW~v~e 139 (149)
.+..|++++|+|++.+-..+.+ -...++|||.+.+|.|+.|.=-...
T Consensus 81 ~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH~tIN~g 134 (182)
T PF06560_consen 81 LSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAHRTINTG 134 (182)
T ss_dssp TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EEEEEE-S
T ss_pred CCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceEEEEECC
Confidence 4578999999999999875431 1367999999999999999866653
No 57
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=95.85 E-value=0.073 Score=40.79 Aligned_cols=64 Identities=13% Similarity=0.072 Sum_probs=54.5
Q ss_pred Cccc-cccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEecC
Q 031987 86 PSKF-PWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLEK 149 (149)
Q Consensus 86 pg~f-~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi~~ 149 (149)
+|+- +.+| +.=|.+|.++|+.+++.-+.++.+.++||.+..+-+.-.|..+..+.++-.-+|+|
T Consensus 44 aGtet~~~YknHlEAvyci~G~Gev~~~~~G~~~~i~pGt~YaLd~hD~H~lra~~dm~~vCVFnP 109 (126)
T PF06339_consen 44 AGTETHIHYKNHLEAVYCIEGEGEVEDLDTGEVHPIKPGTMYALDKHDRHYLRAKTDMRLVCVFNP 109 (126)
T ss_pred CCCeeEEEecCceEEEEEEeceEEEEEccCCcEEEcCCCeEEecCCCccEEEEecCCEEEEEEcCC
Confidence 4543 4455 68999999999999999643389999999999999999999999999998888875
No 58
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=95.76 E-value=0.032 Score=44.29 Aligned_cols=65 Identities=17% Similarity=0.224 Sum_probs=37.7
Q ss_pred CCceeeeEecC--Cccc-ccc-CCCceEEEEEEeEEEEEECCc-------ceEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987 75 GVTSWPKWGCP--PSKF-PWT-FTATETMYLLEGKVIVYVDGR-------EGSFEIGTGDLVVFPKGMKITWDVIE 139 (149)
Q Consensus 75 Gv~~~giWe~~--pg~f-~~h-~~~dE~~yVLEG~v~vt~dgg-------~~~~~i~aGD~v~~PkG~~~tW~v~e 139 (149)
|-....+|--+ ||+- +.| ...+|+++||+|+.++...+. .+++.+.+++.+.||.+..|+--..+
T Consensus 40 GmkevEVwlQTfAPG~~TPiHRHsCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~ 115 (167)
T PF02041_consen 40 GMKEVEVWLQTFAPGSATPIHRHSCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTN 115 (167)
T ss_dssp --SSEEEEEEEE-TT-B--EEEESS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---
T ss_pred CceeeeEEeeeecCCCCCCCccccccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCC
Confidence 33344567665 7765 455 458999999999999998642 35688999999999999998755543
No 59
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=95.61 E-value=0.025 Score=46.06 Aligned_cols=58 Identities=12% Similarity=0.058 Sum_probs=45.8
Q ss_pred ceeeeEecCCcc-cccc-CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987 77 TSWPKWGCPPSK-FPWT-FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA 140 (149)
Q Consensus 77 ~~~giWe~~pg~-f~~h-~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~ 140 (149)
.....|...||. ++.| ....|+.+||+|++. .++ ..+.+||.+..|.|..|++...+.
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~--de~----g~y~~Gd~i~~p~~~~H~p~a~~~ 186 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTHKGFELTLVLHGAFS--DET----GVYGVGDFEEADGSVQHQPRTVSG 186 (215)
T ss_pred cEEEEEEECCCCccCCCcCCCcEEEEEEEEEEE--cCC----CccCCCeEEECCCCCCcCcccCCC
Confidence 456788999986 4655 357899999999963 333 468999999999999999988753
No 60
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.33 E-value=0.087 Score=46.94 Aligned_cols=66 Identities=14% Similarity=0.248 Sum_probs=53.0
Q ss_pred eeEecCCcc---ccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEe
Q 031987 80 PKWGCPPSK---FPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSL 147 (149)
Q Consensus 80 giWe~~pg~---f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi 147 (149)
-+|-.+.+- +-+.-+.||++|+-.|++++..+=| ..++++||..+||+|++-+-+..+.--..|..
T Consensus 128 ~~y~~n~sm~~~~f~NADge~Livpq~G~l~l~te~G--~l~v~pgeiavIPRG~~frve~~~~~~rgy~~ 196 (427)
T COG3508 128 HVYKVNESMTKRFFRNADGELLIVPQQGELRLKTELG--VLEVEPGEIAVIPRGTTFRVELKDGEARGYGC 196 (427)
T ss_pred EEEEccccchhhhhhcCCCCEEEEeecceEEEEEeec--eEEecCCcEEEeeCCceEEEEecCCceEEEEE
Confidence 356655443 3344578999999999999999998 89999999999999999999887666555554
No 61
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=95.31 E-value=0.14 Score=41.90 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=39.3
Q ss_pred eEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEE
Q 031987 97 ETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKH 144 (149)
Q Consensus 97 E~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~ 144 (149)
-+.++++|++.+..+|. ...+.|||+++++.+..+.+...+..+..
T Consensus 73 ~l~~~~~G~~~~~~~g~--~~~l~~G~~~l~~~~~p~~~~~~~~~~~~ 118 (302)
T PRK09685 73 FTVFQLSGHAIIEQDDR--QVQLAAGDITLIDASRPCSIYPQGLSEQI 118 (302)
T ss_pred EEEEEecceEEEEECCe--EEEEcCCCEEEEECCCCcEeecCCCceeE
Confidence 35566899999999988 89999999999999999998887766544
No 62
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=95.17 E-value=0.14 Score=43.41 Aligned_cols=42 Identities=17% Similarity=0.329 Sum_probs=34.2
Q ss_pred CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCc-EEEEEE
Q 031987 94 TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGM-KITWDV 137 (149)
Q Consensus 94 ~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~-~~tW~v 137 (149)
..-.++.+++|++++..+++ .+.+++|+++++|++. ..+.+-
T Consensus 252 ~~~~il~v~~G~~~i~~~~~--~~~l~~G~~~~ipa~~~~~~i~g 294 (302)
T TIGR00218 252 QSALILSVLEGSGRIKSGGK--TLPLKKGESFFIPAHLGPFTIEG 294 (302)
T ss_pred CCcEEEEEEcceEEEEECCE--EEEEecccEEEEccCCccEEEEe
Confidence 35567889999999987665 8999999999999987 455543
No 63
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=95.10 E-value=0.091 Score=39.63 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=31.4
Q ss_pred ccccCCCceEEEEEEeEEEEEECCcc--eEEEEcCCc-EEEEcCCcEEEEEEc
Q 031987 89 FPWTFTATETMYLLEGKVIVYVDGRE--GSFEIGTGD-LVVFPKGMKITWDVI 138 (149)
Q Consensus 89 f~~h~~~dE~~yVLEG~v~vt~dgg~--~~~~i~aGD-~v~~PkG~~~tW~v~ 138 (149)
+++|...+|.+++++|++++..+++. +.+.+...+ .+.+|+|..+.+...
T Consensus 48 ~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~~L~~~~~~L~Ippg~w~~~~~~ 100 (131)
T PF05523_consen 48 WHAHKKTTQWFIVLSGSFKVVLDDGREEEEFILDEPNKGLYIPPGVWHGIKNF 100 (131)
T ss_dssp EEEESS--EEEEEEES-EEEEEE-SS-EEEEEE--TTEEEEE-TT-EEEEE--
T ss_pred ccccccccEEEEEEeCEEEEEEecCCCcEEEEECCCCeEEEECCchhhHhhcc
Confidence 35567799999999999999987653 345555554 899999999988643
No 64
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=94.71 E-value=0.15 Score=37.51 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=40.8
Q ss_pred EEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEE
Q 031987 98 TMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYS 146 (149)
Q Consensus 98 ~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yv 146 (149)
+...++|.+.++.++. ...+.|||+++++.+...+.+..+..++...
T Consensus 58 l~~~~~G~~~~~~~g~--~~~~~pg~~~l~d~~~~~~~~~~~~~~~~~l 104 (172)
T PF14525_consen 58 LVLPLSGSARIEQGGR--EVELAPGDVVLLDPGQPYRLEFSAGCRQLSL 104 (172)
T ss_pred EEEEccCCEEEEECCE--EEEEcCCeEEEEcCCCCEEEEECCCccEEEE
Confidence 3445899999999877 8999999999999999999999888887654
No 65
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=94.55 E-value=0.091 Score=45.94 Aligned_cols=82 Identities=15% Similarity=0.052 Sum_probs=52.5
Q ss_pred eeEEEeeCCChhhhhhc-CCceeeeEecCCcccc-cc-CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEE
Q 031987 58 FGVKIEKNPPQSKLSEL-GVTSWPKWGCPPSKFP-WT-FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKIT 134 (149)
Q Consensus 58 ~~V~i~~~ps~~~L~~l-Gv~~~giWe~~pg~f~-~h-~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~t 134 (149)
-.+.+-.||.-..-..+ ....+++=...||... -| ....-+.+|+||+...+.=|| +.+.+++||+++.|.+..|.
T Consensus 61 Rrvl~l~NP~~~g~~~~t~tl~a~~q~l~pGe~~~~HRht~sAl~~vveG~G~~t~V~g-~~~~~~~gD~~~tP~w~wH~ 139 (335)
T TIGR02272 61 RRVLVLENPGLRGQSSITTSLYAGLQLILPGEVAPSHRHTQSALRFIVEGKGAFTAVDG-ERTTMHPGDFIITPSWTWHD 139 (335)
T ss_pred eEEEEEeCCCCCCccccchhHHhhhEEeCCCCCCCccccccceEEEEEEcCceEEEECC-EEEeeeCCCEEEeCCCeeEe
Confidence 35666667742111111 1111333344577653 34 357789999999986554344 49999999999999999988
Q ss_pred EEEcCc
Q 031987 135 WDVIEA 140 (149)
Q Consensus 135 W~v~e~ 140 (149)
+...+.
T Consensus 140 H~n~~d 145 (335)
T TIGR02272 140 HGNPGD 145 (335)
T ss_pred cccCCC
Confidence 876644
No 66
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=94.54 E-value=0.16 Score=43.43 Aligned_cols=54 Identities=28% Similarity=0.429 Sum_probs=41.6
Q ss_pred cCCCceEEEE-EEeEEEEEECCcceEEEEcCCcEEEEcCCcE-EEEEEcCce--EEEEEe
Q 031987 92 TFTATETMYL-LEGKVIVYVDGREGSFEIGTGDLVVFPKGMK-ITWDVIEAV--NKHYSL 147 (149)
Q Consensus 92 h~~~dE~~yV-LEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~-~tW~v~e~v--rK~Yvi 147 (149)
.....|+++| |.|.++|+.+|. .+++++.|++++|+|.. .+....+.. -|+|+.
T Consensus 70 fl~rrE~giV~lgG~~~V~vdG~--~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~ 127 (276)
T PRK00924 70 FLERRELGIINIGGAGTVTVDGE--TYELGHRDALYVGKGAKEVVFASADAANPAKFYLN 127 (276)
T ss_pred ecCCcEEEEEEccceEEEEECCE--EEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEE
Confidence 3467786655 899999999887 88899999999999977 777655432 466653
No 67
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=94.52 E-value=0.24 Score=43.93 Aligned_cols=37 Identities=8% Similarity=0.358 Sum_probs=31.6
Q ss_pred CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcE
Q 031987 94 TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMK 132 (149)
Q Consensus 94 ~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~ 132 (149)
..-+++.+++|++++..+++ +..+++|+++++|++..
T Consensus 338 ~~~~Illv~~G~~~i~~~~~--~~~l~~G~~~fipa~~~ 374 (389)
T PRK15131 338 QSAAILFCVEGEAVLWKGEQ--QLTLKPGESAFIAANES 374 (389)
T ss_pred CCcEEEEEEcceEEEEeCCe--EEEECCCCEEEEeCCCc
Confidence 44589999999999987555 79999999999999754
No 68
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=93.74 E-value=0.41 Score=40.30 Aligned_cols=67 Identities=21% Similarity=0.277 Sum_probs=45.9
Q ss_pred eeeEecCCccc-cccCCCceEEEE-EEeEEEEEECCcceEEEEcCC--------cEEEEcCCcEEEEEEcCceEEEEEe
Q 031987 79 WPKWGCPPSKF-PWTFTATETMYL-LEGKVIVYVDGREGSFEIGTG--------DLVVFPKGMKITWDVIEAVNKHYSL 147 (149)
Q Consensus 79 ~giWe~~pg~f-~~h~~~dE~~yV-LEG~v~vt~dgg~~~~~i~aG--------D~v~~PkG~~~tW~v~e~vrK~Yvi 147 (149)
.+.+..++++. .......|.+.| |+|+++++.+|. +...++.- |++++|+|...+-...+. -++|+.
T Consensus 29 ~~~l~L~~g~~~~~~~~~~E~~vv~l~G~~~v~~~g~-~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~-ae~~~~ 105 (261)
T PF04962_consen 29 FGVLRLEAGESLEFELERRELGVVNLGGKATVTVDGE-EFYELGGRESVFDGPPDALYVPRGTKVVIFASTD-AEFAVC 105 (261)
T ss_dssp CCCEEEECCHCCCCCCCSEEEEEEEESSSEEEEETTE-EEEEE-TTSSGGGS--EEEEE-TT--EEEEESST-EEEEEE
T ss_pred eEEEEecCCCEEeccCCCcEEEEEEeCCEEEEEeCCc-eEEEecccccccCCCCcEEEeCCCCeEEEEEcCC-CEEEEE
Confidence 44566666653 334566666655 899999999995 57888888 999999999988887666 555543
No 69
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=93.62 E-value=0.65 Score=39.64 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=37.1
Q ss_pred eeEecCCc--cccccCCC-ceEEEEEEeEEEEEECC---------------------cceEEEEcCCcEEEEcCCcEEEE
Q 031987 80 PKWGCPPS--KFPWTFTA-TETMYLLEGKVIVYVDG---------------------REGSFEIGTGDLVVFPKGMKITW 135 (149)
Q Consensus 80 giWe~~pg--~f~~h~~~-dE~~yVLEG~v~vt~dg---------------------g~~~~~i~aGD~v~~PkG~~~tW 135 (149)
..+-..+| .|..|++. |=|+.=++|+=+..+-+ -...++++|||++++|+|+.|.=
T Consensus 117 n~Y~tp~g~~g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~ 196 (319)
T PF08007_consen 117 NAYLTPPGSQGFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQA 196 (319)
T ss_dssp EEEEETSSBEESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EEEE
T ss_pred EEEecCCCCCCccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccCCC
Confidence 34555666 67778764 44455588887766533 01368899999999999999988
Q ss_pred EEcC
Q 031987 136 DVIE 139 (149)
Q Consensus 136 ~v~e 139 (149)
...+
T Consensus 197 ~~~~ 200 (319)
T PF08007_consen 197 VTTD 200 (319)
T ss_dssp EESS
T ss_pred CCCC
Confidence 8776
No 70
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=93.61 E-value=0.36 Score=32.34 Aligned_cols=56 Identities=14% Similarity=0.312 Sum_probs=44.5
Q ss_pred EecCCccc-cccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEE
Q 031987 82 WGCPPSKF-PWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDV 137 (149)
Q Consensus 82 We~~pg~f-~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v 137 (149)
|+..|+.. .+........-+.+|.+=+|.++..+.+-+.|||.+.+++|....-+.
T Consensus 2 ~~L~~g~~~~lr~~~~~~l~v~~G~vWlT~~g~~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQRLRVESGRVWLTREGDPDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EEeCCCceEEeEcCCCcEEEEccccEEEECCCCCCCEEECCCCEEEeCCCCEEEEEe
Confidence 55566654 466666666999999999999986678999999999999998865543
No 71
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=93.13 E-value=0.22 Score=44.49 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=44.8
Q ss_pred CCceEEEEEEeEEEEEEC-CcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEE
Q 031987 94 TATETMYLLEGKVIVYVD-GREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYS 146 (149)
Q Consensus 94 ~~dE~~yVLEG~v~vt~d-gg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yv 146 (149)
+.--+..|++|+.++..+ ++ ...+..||+++||+....+....+..-+.|.
T Consensus 352 ~~~SIllv~~G~g~l~~~t~~--~~~v~rG~V~fI~a~~~i~~~~~sd~~~~yr 403 (411)
T KOG2757|consen 352 DGPSILLVLKGSGILKTDTDS--KILVNRGDVLFIPANHPIHLSSSSDPFLGYR 403 (411)
T ss_pred CCceEEEEEecceEEecCCCC--ceeeccCcEEEEcCCCCceeeccCcceeeee
Confidence 456788999999999999 55 8999999999999999999998888666664
No 72
>PLN02288 mannose-6-phosphate isomerase
Probab=93.08 E-value=0.13 Score=45.84 Aligned_cols=43 Identities=19% Similarity=0.368 Sum_probs=34.8
Q ss_pred CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEE
Q 031987 93 FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITW 135 (149)
Q Consensus 93 ~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW 135 (149)
.+.-+++.|++|++++...++.....+++|+++++|++..+.|
T Consensus 352 ~~gp~Illv~~G~~~i~~~~~~~~~~l~~G~~~fv~a~~~~~~ 394 (394)
T PLN02288 352 VPGPSVFLVIEGEGVLSTGSSEDGTAAKRGDVFFVPAGTEIHV 394 (394)
T ss_pred CCCCEEEEEEcCEEEEecCCccceEEEeceeEEEEeCCCcccC
Confidence 3567899999999999877661136799999999999987654
No 73
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=91.78 E-value=0.95 Score=39.41 Aligned_cols=51 Identities=16% Similarity=0.293 Sum_probs=38.2
Q ss_pred eeeeEecCCccccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCC
Q 031987 78 SWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKG 130 (149)
Q Consensus 78 ~~giWe~~pg~f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG 130 (149)
+...|....-.-......-.+++++||++++..+++ ...+++|+.+++|+.
T Consensus 243 ~l~~~~i~~~~~~~~~~~~~il~v~eG~~~l~~~~~--~~~l~~G~s~~ipa~ 293 (312)
T COG1482 243 ALYKWDISGTAEFIKQESFSILLVLEGEGTLIGGGQ--TLKLKKGESFFIPAN 293 (312)
T ss_pred EEEEEeccChhhhccCCCcEEEEEEcCeEEEecCCE--EEEEcCCcEEEEEcC
Confidence 344555553111122346788999999999999976 999999999999998
No 74
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.28 E-value=0.57 Score=41.07 Aligned_cols=43 Identities=21% Similarity=0.293 Sum_probs=37.7
Q ss_pred CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEE
Q 031987 93 FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDV 137 (149)
Q Consensus 93 ~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v 137 (149)
....-+++|.||+....++|. ++.+.+||+|++|....+....
T Consensus 279 ~t~s~iy~V~eGsg~~~Ig~~--rf~~~~~D~fvVPsW~~~~~~~ 321 (351)
T COG3435 279 HTDSTIYHVVEGSGYTIIGGE--RFDWSAGDIFVVPSWAWHEHVN 321 (351)
T ss_pred ccCCEEEEEEecceeEEECCE--EeeccCCCEEEccCcceeeccc
Confidence 345677889999999999888 9999999999999998887766
No 75
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.10 E-value=0.36 Score=42.27 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=41.4
Q ss_pred CCccc-ccc-CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEE
Q 031987 85 PPSKF-PWT-FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITW 135 (149)
Q Consensus 85 ~pg~f-~~h-~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW 135 (149)
-||+. +-| ....-+-+|+||+.-++.-|| +...+.+||++..|+|..|.-
T Consensus 100 lPGEvApsHrHsqsAlRFvveG~Ga~T~VdG-er~~M~~GDfilTP~w~wHdH 151 (351)
T COG3435 100 LPGEVAPSHRHNQSALRFVVEGKGAYTVVDG-ERTPMEAGDFILTPAWTWHDH 151 (351)
T ss_pred cCcccCCcccccccceEEEEeccceeEeecC-ceeeccCCCEEEccCceeccC
Confidence 37766 445 458899999999999999888 799999999999999866543
No 76
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=90.75 E-value=0.36 Score=37.85 Aligned_cols=61 Identities=18% Similarity=0.344 Sum_probs=41.0
Q ss_pred eeeeEecCCccc-cccCC-CceEEEEEEeEEEEEE------------C--------------C------------cceEE
Q 031987 78 SWPKWGCPPSKF-PWTFT-ATETMYLLEGKVIVYV------------D--------------G------------REGSF 117 (149)
Q Consensus 78 ~~giWe~~pg~f-~~h~~-~dE~~yVLEG~v~vt~------------d--------------g------------g~~~~ 117 (149)
...+|-+.+|.. ++|++ .+=+..+|.|+=++.. . + ..-..
T Consensus 132 ~~~l~ig~~gs~t~lH~D~~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~ 211 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDPSHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYEV 211 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-SSEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEEE
T ss_pred ccEEEEeCCCceeeeeECchhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeEE
Confidence 346788888876 56775 5667777888876641 0 0 12467
Q ss_pred EEcCCcEEEEcCCcEEEEEEc
Q 031987 118 EIGTGDLVVFPKGMKITWDVI 138 (149)
Q Consensus 118 ~i~aGD~v~~PkG~~~tW~v~ 138 (149)
+++|||+++||+||.|.=+..
T Consensus 212 ~l~pGD~LfiP~gWwH~V~~~ 232 (251)
T PF13621_consen 212 VLEPGDVLFIPPGWWHQVENL 232 (251)
T ss_dssp EEETT-EEEE-TT-EEEEEES
T ss_pred EECCCeEEEECCCCeEEEEEc
Confidence 899999999999999999988
No 77
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=90.49 E-value=0.84 Score=38.80 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=40.5
Q ss_pred CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987 93 FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE 139 (149)
Q Consensus 93 ~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e 139 (149)
...-=++++..|.+++..++| +...+.+|.++++|++..++....+
T Consensus 36 ~~~~~li~v~~G~~~i~~~~g-~~l~i~~p~~~~~p~~~~~~~~~~~ 81 (291)
T PRK15186 36 LLQSVLIKLTTGKISITTSSG-EYITASGPMLIFLAKDQTIHITMEE 81 (291)
T ss_pred ecceEEEEeccceEEEEeCCC-ceEEeCCCeEEEEeCCcEEEEEecc
Confidence 345678999999999999888 6799999999999999999887664
No 78
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=89.60 E-value=4.9 Score=28.35 Aligned_cols=62 Identities=18% Similarity=0.189 Sum_probs=42.4
Q ss_pred eeeEecC--Ccccc-ccC---CCceEEEEEEeEEEEEECCc-----ceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987 79 WPKWGCP--PSKFP-WTF---TATETMYLLEGKVIVYVDGR-----EGSFEIGTGDLVVFPKGMKITWDVIEA 140 (149)
Q Consensus 79 ~giWe~~--pg~f~-~h~---~~dE~~yVLEG~v~vt~dgg-----~~~~~i~aGD~v~~PkG~~~tW~v~e~ 140 (149)
.++|..+ |..+. .|. +.-.-..||+|++++..-++ ++...+.+|+..++++...|.=+-..+
T Consensus 3 tP~~t~~tlP~~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~ 75 (82)
T PF09313_consen 3 TPVWTAETLPAALLERHNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD 75 (82)
T ss_dssp ---BETTTS-GGGGSSBCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred CCcCChhhCcHHHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence 4566666 55553 332 35677899999999998554 478899999999999999988776554
No 79
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=88.59 E-value=1.9 Score=32.95 Aligned_cols=45 Identities=20% Similarity=0.328 Sum_probs=40.1
Q ss_pred CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987 93 FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE 139 (149)
Q Consensus 93 ~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e 139 (149)
..+-=+|.|+.|+=++..++. .+++.+|+.++.+.+...+-++.+
T Consensus 21 ~y~p~i~~vlQG~K~~~~g~~--~~~Y~~g~~lv~~~~lPv~~~v~~ 65 (155)
T PF06719_consen 21 VYEPSICIVLQGSKRVHLGDQ--VFEYDAGQYLVSSVDLPVESEVVE 65 (155)
T ss_pred ecCCeEEEEEeeeEEEEECCc--eEEecCCcEEEecCCCcEEEEEee
Confidence 345668999999999999977 999999999999999999999843
No 80
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=88.29 E-value=0.34 Score=40.88 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=23.6
Q ss_pred CCCceEEEEEEeEEEEEECCcc-eEEEEcCCcEEEEcCCc
Q 031987 93 FTATETMYLLEGKVIVYVDGRE-GSFEIGTGDLVVFPKGM 131 (149)
Q Consensus 93 ~~~dE~~yVLEG~v~vt~dgg~-~~~~i~aGD~v~~PkG~ 131 (149)
++.++-+|||+|.+.. +|.+ +...+.||..++.|+|.
T Consensus 54 H~~~~~~~Vi~G~~~~--~~~~a~~~~l~~Gsy~~~PaG~ 91 (251)
T PF14499_consen 54 HNADYRGTVISGELHN--GDPKAAAMWLPAGSYWFQPAGE 91 (251)
T ss_dssp ESS-EEEEEEESEEEE--TTEE-----E-TTEEEEE-TT-
T ss_pred eeeeEEEEEEEeEEEc--CCCcccceecCCCceEeccCCC
Confidence 4689999999997655 4441 23569999999999993
No 81
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=88.12 E-value=1.9 Score=35.64 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=40.7
Q ss_pred CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987 94 TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE 139 (149)
Q Consensus 94 ~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e 139 (149)
-.|-.+.||+|+..-..+|.-+...+.|||....|+|..-+...++
T Consensus 118 ~ad~y~tIL~G~~~~~~~g~~~~evy~pGd~~~l~rg~a~~y~m~~ 163 (216)
T PF04622_consen 118 WADDYFTILSGEQWAWSPGSLEPEVYKPGDSHHLPRGEAKQYQMPP 163 (216)
T ss_pred EeeeEEEEEEEEEEEEcCCCCCceEeccCCEEEecCceEEEEEeCC
Confidence 3788999999999999998767888999999999999998888763
No 82
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=88.06 E-value=1.7 Score=31.97 Aligned_cols=49 Identities=18% Similarity=0.126 Sum_probs=38.2
Q ss_pred Ccccccc--CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEE
Q 031987 86 PSKFPWT--FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWD 136 (149)
Q Consensus 86 pg~f~~h--~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~ 136 (149)
...|++| .+.+-+-||++|+++-.+.-| ....++|||+-.+-+|. +.|+
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~Ds~G-~~~~l~~G~vq~m~AG~-Gi~H 89 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHRDSLG-NRGVLRAGDVQWMTAGS-GIVH 89 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEEETTS-EEEEEETTEEEEEE-TT-TEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEECCCC-CeeEeCCCeEEEEeCCC-CceE
Confidence 3556554 567888899999999998877 77899999999999984 4444
No 83
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=88.04 E-value=3.4 Score=29.48 Aligned_cols=48 Identities=29% Similarity=0.357 Sum_probs=36.7
Q ss_pred CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEc-CceEEE
Q 031987 93 FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVI-EAVNKH 144 (149)
Q Consensus 93 ~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~-e~vrK~ 144 (149)
-+.+=++||++|++++ ++. ...+.+|+++++..|...+.+.. +..|-.
T Consensus 18 ~~~~~~iyv~~G~~~v--~~~--~~~~~~~~~~~l~~g~~i~~~a~~~~a~~l 66 (104)
T PF05726_consen 18 PGHNAFIYVLEGSVEV--GGE--EDPLEAGQLVVLEDGDEIELTAGEEGARFL 66 (104)
T ss_dssp TT-EEEEEEEESEEEE--TTT--TEEEETTEEEEE-SECEEEEEESSSSEEEE
T ss_pred CCCEEEEEEEECcEEE--CCC--cceECCCcEEEECCCceEEEEECCCCcEEE
Confidence 4678899999999655 555 47899999999999999999888 555543
No 84
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=87.34 E-value=3.5 Score=35.09 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=43.5
Q ss_pred eeeEecCCccc-cccCCCceEEEE-EEeEEEEEECCc--------ceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987 79 WPKWGCPPSKF-PWTFTATETMYL-LEGKVIVYVDGR--------EGSFEIGTGDLVVFPKGMKITWDVIEA 140 (149)
Q Consensus 79 ~giWe~~pg~f-~~h~~~dE~~yV-LEG~v~vt~dgg--------~~~~~i~aGD~v~~PkG~~~tW~v~e~ 140 (149)
..+|+..+|.- .......|.|+| ++|.+++...|. ...++=+|=|++++|.|...+-.-...
T Consensus 31 F~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vtA~t~ 102 (270)
T COG3718 31 FRLLRLAAGESATEETGDRERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPAGSAFSVTATTD 102 (270)
T ss_pred EEEEEccCCCcccccCCCceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecCCceEEEEeecc
Confidence 56788888875 345566777665 899999999875 122333477999999998766554444
No 85
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=86.37 E-value=1.4 Score=37.26 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=42.9
Q ss_pred eEecCCccc-cc-cCCC-ceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEe
Q 031987 81 KWGCPPSKF-PW-TFTA-TETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSL 147 (149)
Q Consensus 81 iWe~~pg~f-~~-h~~~-dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi 147 (149)
+-.-+||.. ++ ..+. +-=.|||||++....++. -++++|||.+.+.+-..--..--.+-+..|.+
T Consensus 186 ivsFePGa~ip~aEtHvmEHGlyvLeGk~vYrLn~d--wv~V~aGD~mwm~A~cpQacyagG~g~frYLl 253 (264)
T COG3257 186 IVSFEPGASIPYAETHVMEHGLYVLEGKGVYRLNNN--WVPVEAGDYIWMGAYCPQACYAGGRGAFRYLL 253 (264)
T ss_pred EEEecCCcccchhhhhhhhcceEEEecceEEeecCc--eEEeecccEEEeeccChhhhccCCCCceEEEE
Confidence 344456653 22 2232 334799999999999988 89999999999877555444444444444543
No 86
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=85.65 E-value=1.3 Score=42.33 Aligned_cols=59 Identities=19% Similarity=0.369 Sum_probs=46.1
Q ss_pred CChhhhhhcCC-----ceeeeEecCCccccccCC--CceEEEEEEeEEEEEECCcceEEEEcCCcEE
Q 031987 66 PPQSKLSELGV-----TSWPKWGCPPSKFPWTFT--ATETMYLLEGKVIVYVDGREGSFEIGTGDLV 125 (149)
Q Consensus 66 ps~~~L~~lGv-----~~~giWe~~pg~f~~h~~--~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v 125 (149)
.+.-+|..+|- ...-.=+|.||..-+|.+ .|-.|+|++|++++.-||+ -.-.++.||++
T Consensus 553 HpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDE-VVAILGKGDVF 618 (971)
T KOG0501|consen 553 HPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDE-VVAILGKGDVF 618 (971)
T ss_pred CcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCc-EEEEeecCccc
Confidence 34556666662 223456899999888864 6999999999999999998 66789999986
No 87
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=77.55 E-value=5.6 Score=25.61 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=25.0
Q ss_pred CCceEEEEEEeEEEEEECCcc-e---EEEEcCCcEEE
Q 031987 94 TATETMYLLEGKVIVYVDGRE-G---SFEIGTGDLVV 126 (149)
Q Consensus 94 ~~dE~~yVLEG~v~vt~dgg~-~---~~~i~aGD~v~ 126 (149)
..+.+++|++|.+.+...+.+ . ...+++||.+-
T Consensus 16 ~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g 52 (91)
T PF00027_consen 16 PCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFG 52 (91)
T ss_dssp BESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEES
T ss_pred cCCEEEEEEECceEEEeceecceeeeecceeeecccc
Confidence 478999999999999885431 2 24788998764
No 88
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=76.86 E-value=5.4 Score=33.69 Aligned_cols=44 Identities=18% Similarity=0.425 Sum_probs=34.9
Q ss_pred cccC-CCceEEEEEEeEEEEEECC--cceEEEEcCCcEEEEcCCcEE
Q 031987 90 PWTF-TATETMYLLEGKVIVYVDG--REGSFEIGTGDLVVFPKGMKI 133 (149)
Q Consensus 90 ~~h~-~~dE~~yVLEG~v~vt~dg--g~~~~~i~aGD~v~~PkG~~~ 133 (149)
.+|. ..+|+||=+.|...+.+-+ .-+...++.||.+.+|+...|
T Consensus 47 dyHieegeE~FyQ~KGdMvLKVie~g~~rDivI~qGe~flLParVpH 93 (279)
T KOG3995|consen 47 DYHIEEGEEVFYQLKGDMVLKVLEQGKHRDVVIRQGEIFLLPARVPH 93 (279)
T ss_pred ccccCCcchhheeecCceEEeeeccCcceeeEEecCcEEEeccCCCC
Confidence 3454 4689999999999887743 225678999999999998875
No 89
>PRK11396 hypothetical protein; Provisional
Probab=74.76 E-value=25 Score=28.67 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=44.5
Q ss_pred CccccccCCCceEEEEEEe-EEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987 86 PSKFPWTFTATETMYLLEG-KVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA 140 (149)
Q Consensus 86 pg~f~~h~~~dE~~yVLEG-~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~ 140 (149)
.|.|...-..|=++.+||| .++++.++. ....+.++|.+.|+.+....-+..+.
T Consensus 46 ~GpFS~FpGidR~i~lL~G~g~~L~~~~~-~~~~l~~~~p~~F~Gd~~v~a~L~~G 100 (191)
T PRK11396 46 NGEFSLFPGMERIVTLLEGGEMFLESADR-FNHTLKPLQPFAFAADQVVKAKLTAG 100 (191)
T ss_pred CCCCCCCCCccEEEEEEECCCEEEeeCCc-cceecCCCCCeEeCCCCeeEEEECCC
Confidence 5566665678999999998 789998876 56778999999999999998886544
No 90
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=72.87 E-value=21 Score=28.27 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=38.3
Q ss_pred CccccccCCCceEEEEEEeE-EEEEECCcceEEEEcCCcEEEEcCCcEEEEE-EcCceEEE
Q 031987 86 PSKFPWTFTATETMYLLEGK-VIVYVDGREGSFEIGTGDLVVFPKGMKITWD-VIEAVNKH 144 (149)
Q Consensus 86 pg~f~~h~~~dE~~yVLEG~-v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~-v~e~vrK~ 144 (149)
.|.|..--.++=+..+|+|. ++++.++..+...+.+++.+.|+-++..+-+ ...+++-+
T Consensus 45 ~g~FS~FpG~~R~l~~L~G~gl~L~~~~~~~~~~l~p~~~~~F~G~~~v~~~l~~G~~~df 105 (184)
T PF05962_consen 45 DGPFSDFPGYDRILTLLEGNGLRLTHDGQQEHTLLQPFQPFAFDGDWPVTSELLDGPVRDF 105 (184)
T ss_dssp SEEE---TT-EEEEEEEESS-EEEEETTCSE-EEE-BT--EEEETTS-EEEEESSS-EEEE
T ss_pred CCCCCCCCCCcEEEEEEeCCcEEEecCCCcceeccCCCCcEEcCCCCeEEEEECCCCEEEE
Confidence 33454444688899999999 9999998734556999999999999998887 33555544
No 91
>COG1741 Pirin-related protein [General function prediction only]
Probab=71.69 E-value=9.6 Score=32.53 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=38.0
Q ss_pred CCc-ccccc--CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEE
Q 031987 85 PPS-KFPWT--FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKI 133 (149)
Q Consensus 85 ~pg-~f~~h--~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~ 133 (149)
.|| .|++| .+-+=+-||++|+++=.+..| ....++|||+-.+-+|.-+
T Consensus 52 ~pG~~f~pHPHrg~etvTyvl~G~i~HrDS~G-n~~~i~pGdvqwMTAG~GI 102 (276)
T COG1741 52 APGRGFPPHPHRGLETVTYVLDGEIEHRDSLG-NKGVIRPGDVQWMTAGSGI 102 (276)
T ss_pred cCCCcCCCCCCCCcEEEEEEEccEEEEeecCC-ceeeecccceeEEcCCCce
Confidence 345 35665 345667799999999999887 7899999999999998544
No 92
>PRK15044 transcriptional regulator SirC; Provisional
Probab=70.70 E-value=10 Score=32.90 Aligned_cols=46 Identities=17% Similarity=0.097 Sum_probs=39.5
Q ss_pred CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987 93 FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE 139 (149)
Q Consensus 93 ~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e 139 (149)
...-=.+.+-.|+++++++.| +.....+-+++++|+|..++....+
T Consensus 38 ~~~~~l~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~k~~~i~~~~~~ 83 (295)
T PRK15044 38 VANCLLFKLNKGSLRIENEFG-EFIEQSAPCLFLLEKDQTITLSMSE 83 (295)
T ss_pred ecceEEEEEecCeEEEEecCC-ceEEecCCeeEEEeCCCEEEEeHhh
Confidence 345667888999999999999 8999999999999999998876543
No 93
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.94 E-value=1.2 Score=41.34 Aligned_cols=53 Identities=23% Similarity=0.353 Sum_probs=36.3
Q ss_pred cccccCCC-ceEEEEEEeEEEEEE--------------------CC-cceE---EEEcCCcEEEEcCCcEEEEEEcCce
Q 031987 88 KFPWTFTA-TETMYLLEGKVIVYV--------------------DG-REGS---FEIGTGDLVVFPKGMKITWDVIEAV 141 (149)
Q Consensus 88 ~f~~h~~~-dE~~yVLEG~v~vt~--------------------dg-g~~~---~~i~aGD~v~~PkG~~~tW~v~e~v 141 (149)
.|.-||+. +-|+.=+||+=...+ |+ | ++ ..++|||+++||+|+-|+-++.+.+
T Consensus 330 GfaPHyDdIeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlg-ePV~e~vle~GDllYfPRG~IHQA~t~~~v 407 (629)
T KOG3706|consen 330 GFAPHYDDIEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLG-EPVHEFVLEPGDLLYFPRGTIHQADTPALV 407 (629)
T ss_pred CCCCchhhhhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhC-CchHHhhcCCCcEEEecCcceeeccccchh
Confidence 46777765 455555899865432 11 1 22 3589999999999999988877643
No 94
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=68.30 E-value=4.6 Score=32.07 Aligned_cols=38 Identities=24% Similarity=0.468 Sum_probs=26.7
Q ss_pred CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEE
Q 031987 94 TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKI 133 (149)
Q Consensus 94 ~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~ 133 (149)
...=++|+++|++.+..+++ .+.+.+||++.+-.+...
T Consensus 134 ~~~~l~~~~~G~~~i~~~~~--~~~L~~~d~l~~~~~~~~ 171 (184)
T PF05962_consen 134 ASTVLVYVLEGAWSITEGGN--CISLSAGDLLLIDDEEDL 171 (184)
T ss_dssp -SEEEEEESSS-EEECCCEE--EEEE-TT-EEEEESEECE
T ss_pred CCEEEEEEeeCcEEEecCCC--ceEcCCCCEEEEeCCCce
Confidence 45556899999888777744 899999999999885444
No 95
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=67.46 E-value=16 Score=31.26 Aligned_cols=53 Identities=25% Similarity=0.466 Sum_probs=42.4
Q ss_pred CCCceEEEE-EEeEEEEEECCcceEEEEcCCcEEEEcCC-cEEEEEEcCce--EEEEEe
Q 031987 93 FTATETMYL-LEGKVIVYVDGREGSFEIGTGDLVVFPKG-MKITWDVIEAV--NKHYSL 147 (149)
Q Consensus 93 ~~~dE~~yV-LEG~v~vt~dgg~~~~~i~aGD~v~~PkG-~~~tW~v~e~v--rK~Yvi 147 (149)
...-|+..| +-|..+++++|. +++++..|++++-.| -..+|...+.- -|||..
T Consensus 73 LeRRElgiINIG~~G~i~v~g~--~y~l~~rd~LYvg~G~~dv~F~s~d~~~pAkFY~~ 129 (278)
T COG3717 73 LERRELGIINIGGPGTITVDGQ--EYELGHRDALYVGMGAKDVTFSSIDGAAPAKFYYV 129 (278)
T ss_pred ceeeeeeEEeeCCCceEEECCE--EEEeccccEEEEecCccceEEeccCCCCcceEEEe
Confidence 456777776 677888999887 999999999999999 45889888754 367764
No 96
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=67.20 E-value=7 Score=27.13 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=16.9
Q ss_pred EEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987 116 SFEIGTGDLVVFPKGMKITWDVIEA 140 (149)
Q Consensus 116 ~~~i~aGD~v~~PkG~~~tW~v~e~ 140 (149)
..+-+|||+|++|+|+-|.=...+.
T Consensus 82 ~~~Q~~Ge~V~i~pg~~H~v~n~g~ 106 (114)
T PF02373_consen 82 RFVQKPGEFVFIPPGAYHQVFNLGD 106 (114)
T ss_dssp EEEEETT-EEEE-TT-EEEEEESSS
T ss_pred cceECCCCEEEECCCceEEEEeCCc
Confidence 6778999999999998876555443
No 97
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=66.00 E-value=14 Score=31.01 Aligned_cols=42 Identities=14% Similarity=0.217 Sum_probs=27.0
Q ss_pred ceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987 96 TETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE 139 (149)
Q Consensus 96 dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e 139 (149)
.-+.+.++|...-...|+ .+.+.||+++.+++|.-|.|-...
T Consensus 137 ~~v~V~~DG~~~t~~aG~--~l~L~PGESiTL~Pg~yH~Fw~e~ 178 (225)
T PF07385_consen 137 TDVTVPVDGIRRTVPAGT--QLRLNPGESITLPPGIYHWFWGEG 178 (225)
T ss_dssp S-EEEEETTEEEEE-TT---EEEE-TT-EEEE-TTEEEEEEE-T
T ss_pred CCeEEecCCcEEEecCCc--eEEeCCCCeEeeCCCCeeeEEecC
Confidence 344555667766666666 899999999999999999987653
No 98
>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins. Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=65.95 E-value=9.4 Score=29.96 Aligned_cols=41 Identities=20% Similarity=-0.010 Sum_probs=26.3
Q ss_pred ceeeeEecCCccccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCc
Q 031987 77 TSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGM 131 (149)
Q Consensus 77 ~~~giWe~~pg~f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~ 131 (149)
+.||.|...|+.-.-...++.+.+ + | ..++-||.|.+-.+-
T Consensus 2 ~~~~~~~g~~~~~~~~~~Y~s~~~----------~-g---~~y~lGD~Vlv~s~~ 42 (159)
T cd04715 2 FKWGVKRGEGGKKKDGQFYRSFTY----------D-G---VEYRLYDDVYVHNGD 42 (159)
T ss_pred cccceecccccccCCceEEEEEEE----------C-C---EEEeCCCEEEEeCCC
Confidence 459999999987543223444433 3 3 347788888887653
No 99
>PRK15185 transcriptional regulator HilD; Provisional
Probab=64.65 E-value=16 Score=31.71 Aligned_cols=43 Identities=9% Similarity=0.134 Sum_probs=37.6
Q ss_pred CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEc
Q 031987 94 TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVI 138 (149)
Q Consensus 94 ~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~ 138 (149)
..-=++|+-.|+++++.++| +..+-|+++++++||....-...
T Consensus 48 ~~~~l~~~~~~~~~i~~~~~--~~~~~~~~~~~~~k~~~i~~~~~ 90 (309)
T PRK15185 48 SSFTLVCFRSGKLTISNNHD--TIYCDEPGMLVLKKEQVVNVTLE 90 (309)
T ss_pred eeeEEEEEccceEEEEcCCc--eEEeCCCceEEEeCCcEEEEEhh
Confidence 45678899999999999998 88999999999999999877443
No 100
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=63.50 E-value=35 Score=25.87 Aligned_cols=34 Identities=9% Similarity=0.023 Sum_probs=23.3
Q ss_pred CceEEEEEEeEEEEEEC--Ccce-EE-EEcCCcEEEEc
Q 031987 95 ATETMYLLEGKVIVYVD--GREG-SF-EIGTGDLVVFP 128 (149)
Q Consensus 95 ~dE~~yVLEG~v~vt~d--gg~~-~~-~i~aGD~v~~P 128 (149)
.+.+++|++|.+.+... +|.+ .. .+.|||.+-.+
T Consensus 26 ~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~ 63 (202)
T PRK13918 26 SDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEE 63 (202)
T ss_pred CCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechH
Confidence 37799999999998652 3312 22 35999987543
No 101
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=58.79 E-value=25 Score=22.88 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=29.8
Q ss_pred cCCcccccc--CCCceEEEEEEeEEEEEEC--Ccc--eEEEEcCCcEEEEc
Q 031987 84 CPPSKFPWT--FTATETMYLLEGKVIVYVD--GRE--GSFEIGTGDLVVFP 128 (149)
Q Consensus 84 ~~pg~f~~h--~~~dE~~yVLEG~v~vt~d--gg~--~~~~i~aGD~v~~P 128 (149)
..+|..-++ -..+.+++|++|.+.+... +|+ ....+.+||.+-..
T Consensus 22 ~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 22 YPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGEL 72 (120)
T ss_pred eCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechh
Confidence 445554443 3468899999999999864 221 23457899988654
No 102
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=58.66 E-value=23 Score=31.45 Aligned_cols=47 Identities=13% Similarity=0.277 Sum_probs=38.8
Q ss_pred CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceE
Q 031987 94 TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVN 142 (149)
Q Consensus 94 ~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vr 142 (149)
+.|=.+.=-.|.+.|+.+-| ...+.|+++.+||+|++-.-++.++.|
T Consensus 154 DGDFLiVPQ~G~L~I~TEfG--rllV~P~EI~VIpqG~RFsi~v~~~sR 200 (446)
T KOG1417|consen 154 DGDFLIVPQQGRLWITTEFG--RLLVTPNEIAVIPQGIRFSIDVPGPSR 200 (446)
T ss_pred CCCEEEecccCcEEEEeecc--ceeecccceEEeecccEEEEecCCCCc
Confidence 34444444689999999988 899999999999999999988887755
No 103
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=57.95 E-value=5.8 Score=33.53 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=17.4
Q ss_pred EEEEcCCcEEEEcCCcEEE
Q 031987 116 SFEIGTGDLVVFPKGMKIT 134 (149)
Q Consensus 116 ~~~i~aGD~v~~PkG~~~t 134 (149)
.+.+++||++++|+|+.|.
T Consensus 152 ~v~v~~Gd~i~ipaGt~HA 170 (302)
T TIGR00218 152 RIKLKPGDFFYVPSGTPHA 170 (302)
T ss_pred ccccCCCCEEEeCCCCccc
Confidence 5789999999999999986
No 104
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=57.44 E-value=21 Score=23.29 Aligned_cols=45 Identities=24% Similarity=0.166 Sum_probs=29.8
Q ss_pred cCCcccccc--CCCceEEEEEEeEEEEEECCc----ceEEEEcCCcEEEEc
Q 031987 84 CPPSKFPWT--FTATETMYLLEGKVIVYVDGR----EGSFEIGTGDLVVFP 128 (149)
Q Consensus 84 ~~pg~f~~h--~~~dE~~yVLEG~v~vt~dgg----~~~~~i~aGD~v~~P 128 (149)
..+|..-++ -..+.+++|++|.+.+...+. .....+.+||.+-..
T Consensus 22 ~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (115)
T cd00038 22 FPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGEL 72 (115)
T ss_pred eCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChH
Confidence 345554433 246889999999999977542 134457889887653
No 105
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=57.40 E-value=9.5 Score=33.27 Aligned_cols=21 Identities=14% Similarity=0.457 Sum_probs=18.6
Q ss_pred eEEEEcCCcEEEEcCCcEEEE
Q 031987 115 GSFEIGTGDLVVFPKGMKITW 135 (149)
Q Consensus 115 ~~~~i~aGD~v~~PkG~~~tW 135 (149)
..+.++|||++++|+|..|..
T Consensus 158 n~v~lkpGe~~fl~Agt~HA~ 178 (312)
T COG1482 158 NRVKLKPGEAFFLPAGTPHAY 178 (312)
T ss_pred cEEecCCCCEEEecCCCceee
Confidence 368899999999999999865
No 106
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=52.06 E-value=15 Score=32.72 Aligned_cols=20 Identities=5% Similarity=0.197 Sum_probs=17.5
Q ss_pred EEEEcCCcEEEEcCCcEEEE
Q 031987 116 SFEIGTGDLVVFPKGMKITW 135 (149)
Q Consensus 116 ~~~i~aGD~v~~PkG~~~tW 135 (149)
.+.++|||++++|+|..|.+
T Consensus 238 ~v~l~pGeaifipAg~~HAy 257 (389)
T PRK15131 238 VVKLNPGEAMFLFAETPHAY 257 (389)
T ss_pred EEEeCCCCEEEeCCCCCeEE
Confidence 57899999999999998865
No 107
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=50.45 E-value=37 Score=25.90 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=29.3
Q ss_pred EecCCcccccc--CCCceEEEEEEeEEEEEE--CCcceE--EEEcCCcEEEE
Q 031987 82 WGCPPSKFPWT--FTATETMYLLEGKVIVYV--DGREGS--FEIGTGDLVVF 127 (149)
Q Consensus 82 We~~pg~f~~h--~~~dE~~yVLEG~v~vt~--dgg~~~--~~i~aGD~v~~ 127 (149)
-.-.+|..-.+ -..+.+++|++|.+++.. ++|++. ..+++||.+-.
T Consensus 23 ~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 74 (211)
T PRK11753 23 HKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE 74 (211)
T ss_pred EEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEee
Confidence 34445554332 346789999999999874 233122 25899999744
No 108
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=49.01 E-value=33 Score=33.29 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=34.1
Q ss_pred ecCCcccccc--CCCceEEEEEEeEEEEEECCc---ceEEEEcCCcEEE
Q 031987 83 GCPPSKFPWT--FTATETMYLLEGKVIVYVDGR---EGSFEIGTGDLVV 126 (149)
Q Consensus 83 e~~pg~f~~h--~~~dE~~yVLEG~v~vt~dgg---~~~~~i~aGD~v~ 126 (149)
-++||.+-.+ -..+|+.+|+.|++++...++ .....+++||.+-
T Consensus 446 ~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~G 494 (727)
T KOG0498|consen 446 YFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFG 494 (727)
T ss_pred ccCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCccc
Confidence 3557777544 357999999999999998773 1466799999987
No 109
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=48.74 E-value=37 Score=21.00 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=18.2
Q ss_pred EeEEEEEECCcceEEEEcCCcEEE
Q 031987 103 EGKVIVYVDGREGSFEIGTGDLVV 126 (149)
Q Consensus 103 EG~v~vt~dgg~~~~~i~aGD~v~ 126 (149)
+|.+.+..+++ ....+.+||+..
T Consensus 25 ~G~L~v~~~~g-~~~~i~sGdv~~ 47 (48)
T PF02237_consen 25 DGALLVRTEDG-SIRTISSGDVSL 47 (48)
T ss_dssp TSEEEEEETTE-EEEEESSSEEEE
T ss_pred CCEEEEEECCC-CEEEEEEEEEEe
Confidence 47778888888 788899999763
No 110
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=47.26 E-value=28 Score=28.86 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=22.5
Q ss_pred eEEEEEECCcceEEEEcCCcEEEEcCCcEEEEE
Q 031987 104 GKVIVYVDGREGSFEIGTGDLVVFPKGMKITWD 136 (149)
Q Consensus 104 G~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~ 136 (149)
|+..+....+...+...+||+++||....|.=.
T Consensus 130 GEl~~~~~~g~~~Vkp~aG~~vlfps~~lH~v~ 162 (226)
T PRK05467 130 GELVIEDTYGEHRVKLPAGDLVLYPSTSLHRVT 162 (226)
T ss_pred CceEEecCCCcEEEecCCCeEEEECCCCceeee
Confidence 455554443336778899999999987665443
No 111
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=47.15 E-value=79 Score=24.23 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=20.8
Q ss_pred eEEEEcCCcEEEEcCCcEEEEEEcCceEEE
Q 031987 115 GSFEIGTGDLVVFPKGMKITWDVIEAVNKH 144 (149)
Q Consensus 115 ~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~ 144 (149)
..+.+.+||.++|-++-.|.=--.+++||.
T Consensus 106 ~~v~l~~G~F~iffP~daH~P~~~~~ikK~ 135 (149)
T PRK10202 106 ETVEVHEGQIVICDIHEAYRFICNNAVKKV 135 (149)
T ss_pred cEEEeCCCeEEEECCcccccCCCCCcEEEE
Confidence 477889999888877766554444556664
No 112
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=45.54 E-value=67 Score=28.12 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=46.0
Q ss_pred CCCCCCCCcccCCCccc-ccccCC-ccccceeeeEEEeeCCChhhhhhcCCceeeeEecC---Cccccc-------c-CC
Q 031987 28 PKSKPTTPRVSKSKPVM-ASTTTT-TAATAEIFGVKIEKNPPQSKLSELGVTSWPKWGCP---PSKFPW-------T-FT 94 (149)
Q Consensus 28 ~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~V~i~~~ps~~~L~~lGv~~~giWe~~---pg~f~~-------h-~~ 94 (149)
-..+-+|=|-+.|-||. |+.++. -|..++++-|+..-+- .+.. ---|+|+ |.++.. . |+
T Consensus 33 ~~~~~Tt~RR~~pipQL~Cvggsa~~c~~~~p~vvqC~N~G----~dg~----dvqW~C~A~Lp~~~klG~~~V~CEGY~ 104 (318)
T PF06682_consen 33 YAGRMTTSRRVSPIPQLKCVGGSARGCDLYEPDVVQCTNQG----YDGE----DVQWECKADLPNEYKLGSTDVSCEGYD 104 (318)
T ss_pred eCCCccccccCCCCcceeecCCCcccccccCcceEEEEecC----CCCc----ccceEEeCCCCcceeecceEEeeeccc
Confidence 34578888989998885 777777 5888888777766443 1111 1139998 333321 0 33
Q ss_pred CceEEEEEEeEEEEE
Q 031987 95 ATETMYLLEGKVIVY 109 (149)
Q Consensus 95 ~dE~~yVLEG~v~vt 109 (149)
+.|==|||.|++-|+
T Consensus 105 ~pdDpyvLkGSCgle 119 (318)
T PF06682_consen 105 YPDDPYVLKGSCGLE 119 (318)
T ss_pred CCCCceecCCccceE
Confidence 333348899987553
No 113
>COG3097 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.53 E-value=11 Score=27.98 Aligned_cols=28 Identities=14% Similarity=0.393 Sum_probs=24.3
Q ss_pred EEEeEEEEEECCcceEEEEcCCcEEEEcC
Q 031987 101 LLEGKVIVYVDGREGSFEIGTGDLVVFPK 129 (149)
Q Consensus 101 VLEG~v~vt~dgg~~~~~i~aGD~v~~Pk 129 (149)
||.|+=++++.|. .+-.++|||.+.+-.
T Consensus 16 ilagrKTITIRD~-SEShf~~g~vlrV~r 43 (106)
T COG3097 16 ILAGRKTITIRDK-SESHFKPGDVLRVGR 43 (106)
T ss_pred HhCCCceEEEecc-chhcCCCCCEEEEEE
Confidence 7899999999988 788999999998643
No 114
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=44.89 E-value=32 Score=32.15 Aligned_cols=64 Identities=23% Similarity=0.253 Sum_probs=43.6
Q ss_pred eeeEEEeeCCChhhhhhc------CCceeeeEecCCccccccCCCceEEEEEEeEEEEEECCc-ceEEEEcCCcEE
Q 031987 57 IFGVKIEKNPPQSKLSEL------GVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGR-EGSFEIGTGDLV 125 (149)
Q Consensus 57 ~~~V~i~~~ps~~~L~~l------Gv~~~giWe~~pg~f~~h~~~dE~~yVLEG~v~vt~dgg-~~~~~i~aGD~v 125 (149)
..+|+|=+++.++-|.++ -+++-|-.-|.+|. -..|.+.|-+|.+.+..||| ..-.++++|+.+
T Consensus 309 LkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGd-----vgkEMyIVk~G~L~Vv~dDg~t~~~~L~~G~~F 379 (536)
T KOG0500|consen 309 LKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGD-----VGKEMYIVKEGKLAVVADDGVTVFVTLKAGSVF 379 (536)
T ss_pred HHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCc-----ccceEEEEEccEEEEEecCCcEEEEEecCCcee
Confidence 346777777776666554 34443444444443 46899999999999999877 344578999865
No 115
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=43.53 E-value=1.6e+02 Score=23.29 Aligned_cols=62 Identities=11% Similarity=0.148 Sum_probs=43.2
Q ss_pred Ccccc-ccC----CCceEEEEEEeEEEEEECC---c------ceEEEEcC--CcEEEEcCCcEEEEEEcCc-eEEEEEe
Q 031987 86 PSKFP-WTF----TATETMYLLEGKVIVYVDG---R------EGSFEIGT--GDLVVFPKGMKITWDVIEA-VNKHYSL 147 (149)
Q Consensus 86 pg~f~-~h~----~~dE~~yVLEG~v~vt~dg---g------~~~~~i~a--GD~v~~PkG~~~tW~v~e~-vrK~Yvi 147 (149)
+|..+ +|+ .+..+++++.|++....=| + -..+++.+ +-.++||+|+.|-+-+.+. ..-.|..
T Consensus 53 ~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~a~v~Y~~ 131 (176)
T TIGR01221 53 KGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDEAEFLYKC 131 (176)
T ss_pred CCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCCeEEEEeC
Confidence 45543 554 3799999999998765522 1 12456776 5699999999999998643 5555554
No 116
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=43.43 E-value=16 Score=27.43 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=25.0
Q ss_pred EEEEEeE---EEEEECCcceEEEEcCCcEEEEcC
Q 031987 99 MYLLEGK---VIVYVDGREGSFEIGTGDLVVFPK 129 (149)
Q Consensus 99 ~yVLEG~---v~vt~dgg~~~~~i~aGD~v~~Pk 129 (149)
-|+++|+ -.+..+|. ..+...+||.+.+=.
T Consensus 56 TYvI~g~~gSg~I~lNGA-AAr~~~~GD~vII~s 88 (111)
T cd06919 56 TYVIPGERGSGVICLNGA-AARLGQPGDRVIIMA 88 (111)
T ss_pred EEEEEcCCCCCEEEeCCH-HHhcCCCCCEEEEEE
Confidence 4777776 88999988 789999999998754
No 117
>PLN02868 acyl-CoA thioesterase family protein
Probab=43.19 E-value=76 Score=27.81 Aligned_cols=64 Identities=11% Similarity=0.090 Sum_probs=38.6
Q ss_pred eeCCChhhhhhcCCceeeeEecCCcccccc--CCCceEEEEEEeEEEEEECC--cc-eEEEEcCCcEEEE
Q 031987 63 EKNPPQSKLSELGVTSWPKWGCPPSKFPWT--FTATETMYLLEGKVIVYVDG--RE-GSFEIGTGDLVVF 127 (149)
Q Consensus 63 ~~~ps~~~L~~lGv~~~giWe~~pg~f~~h--~~~dE~~yVLEG~v~vt~dg--g~-~~~~i~aGD~v~~ 127 (149)
-++.+...+.++-.. +...+..+|..-.+ -..+.+++|++|++++...+ ++ ....+++||.+-.
T Consensus 16 F~~L~~~~l~~l~~~-~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 16 LQRLPSSSLKKIAEV-VVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGY 84 (413)
T ss_pred cccCCHHHHHHHHHh-ceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeeh
Confidence 334455555444221 23345666765443 45788999999999987633 21 2335799998874
No 118
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=42.45 E-value=59 Score=24.29 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=23.8
Q ss_pred CCceEEEEEEeEEEEEE--CCcceE--EEEcCCcEEEE
Q 031987 94 TATETMYLLEGKVIVYV--DGREGS--FEIGTGDLVVF 127 (149)
Q Consensus 94 ~~dE~~yVLEG~v~vt~--dgg~~~--~~i~aGD~v~~ 127 (149)
..+-+++|++|.+.+.. ++|.+. ..+++||.+-.
T Consensus 10 ~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~ 47 (193)
T TIGR03697 10 PAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGV 47 (193)
T ss_pred CCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeee
Confidence 45779999999999765 334232 34799997743
No 119
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=41.80 E-value=62 Score=25.49 Aligned_cols=45 Identities=11% Similarity=0.057 Sum_probs=29.7
Q ss_pred ecCCcccccc--CCCceEEEEEEeEEEEEE--CCcceE--EEEcCCcEEEE
Q 031987 83 GCPPSKFPWT--FTATETMYLLEGKVIVYV--DGREGS--FEIGTGDLVVF 127 (149)
Q Consensus 83 e~~pg~f~~h--~~~dE~~yVLEG~v~vt~--dgg~~~--~~i~aGD~v~~ 127 (149)
...+|.+-++ -..+.+++|++|.+.+.. ++|++. ..+.+||.+-.
T Consensus 35 ~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~ 85 (226)
T PRK10402 35 HFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGE 85 (226)
T ss_pred eeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEe
Confidence 4455655443 346889999999999875 334122 24789998764
No 120
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=41.13 E-value=1.8e+02 Score=22.99 Aligned_cols=53 Identities=15% Similarity=0.277 Sum_probs=37.6
Q ss_pred CceEEEEEEeEEEEEECC---------cceEEEEcCCc--EEEEcCCcEEEEEEcCc-eEEEEEe
Q 031987 95 ATETMYLLEGKVIVYVDG---------REGSFEIGTGD--LVVFPKGMKITWDVIEA-VNKHYSL 147 (149)
Q Consensus 95 ~dE~~yVLEG~v~vt~dg---------g~~~~~i~aGD--~v~~PkG~~~tW~v~e~-vrK~Yvi 147 (149)
+..++.++.|++....=| .-..+.+.+++ .++||+|+.|-|-+.+. ..-.|..
T Consensus 67 q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y~~ 131 (176)
T PF00908_consen 67 QAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLYKV 131 (176)
T ss_dssp EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEEEE
T ss_pred CCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEEec
Confidence 467999999988765422 11456677776 79999999999999876 3445543
No 121
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=39.78 E-value=1e+02 Score=24.44 Aligned_cols=38 Identities=18% Similarity=0.148 Sum_probs=26.1
Q ss_pred CCceEEEEEEeEEEEEE--CCcceEE--EEcCCcEEEEcCCc
Q 031987 94 TATETMYLLEGKVIVYV--DGREGSF--EIGTGDLVVFPKGM 131 (149)
Q Consensus 94 ~~dE~~yVLEG~v~vt~--dgg~~~~--~i~aGD~v~~PkG~ 131 (149)
..+-+++|++|.+.+.. ++|++.. .+.+||++-+..+.
T Consensus 55 ~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~ 96 (230)
T PRK09391 55 PADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGS 96 (230)
T ss_pred CCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCC
Confidence 46778899999999875 2342222 35899988766543
No 122
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=38.37 E-value=21 Score=27.43 Aligned_cols=30 Identities=30% Similarity=0.619 Sum_probs=24.6
Q ss_pred EEEEEeE---EEEEECCcceEEEEcCCcEEEEcC
Q 031987 99 MYLLEGK---VIVYVDGREGSFEIGTGDLVVFPK 129 (149)
Q Consensus 99 ~yVLEG~---v~vt~dgg~~~~~i~aGD~v~~Pk 129 (149)
-|++.|+ ..+..+|. .-+...+||.+.+=.
T Consensus 57 TYvI~G~~GSg~I~lNGA-AArl~~~GD~VII~s 89 (126)
T TIGR00223 57 TYAIAGKRGSRIICVNGA-AARCVSVGDIVIIAS 89 (126)
T ss_pred EEEEEcCCCCCEEEeCCH-HHhcCCCCCEEEEEE
Confidence 4777776 78899988 789999999998754
No 123
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=37.70 E-value=22 Score=27.29 Aligned_cols=30 Identities=23% Similarity=0.583 Sum_probs=24.6
Q ss_pred EEEEEeE---EEEEECCcceEEEEcCCcEEEEcC
Q 031987 99 MYLLEGK---VIVYVDGREGSFEIGTGDLVVFPK 129 (149)
Q Consensus 99 ~yVLEG~---v~vt~dgg~~~~~i~aGD~v~~Pk 129 (149)
-|+++|+ ..+..+|. .-+...+||.+.+=.
T Consensus 57 TYvI~g~~GSg~I~lNGA-AAr~~~~GD~vII~a 89 (126)
T PRK05449 57 TYVIAGERGSGVICLNGA-AARLVQVGDLVIIAA 89 (126)
T ss_pred EEEEEcCCCCCEEEeCCH-HHhcCCCCCEEEEEE
Confidence 4777776 78999988 789999999998754
No 124
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=37.15 E-value=51 Score=27.66 Aligned_cols=39 Identities=23% Similarity=0.215 Sum_probs=23.3
Q ss_pred eEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEE
Q 031987 104 GKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHY 145 (149)
Q Consensus 104 G~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Y 145 (149)
..++|..||. .+++.||..+.+.+|-+.|.. ..-+..||
T Consensus 137 ~~v~V~~DG~--~~t~~aG~~l~L~PGESiTL~-Pg~yH~Fw 175 (225)
T PF07385_consen 137 TDVTVPVDGI--RRTVPAGTQLRLNPGESITLP-PGIYHWFW 175 (225)
T ss_dssp S-EEEEETTE--EEEE-TT-EEEE-TT-EEEE--TTEEEEEE
T ss_pred CCeEEecCCc--EEEecCCceEEeCCCCeEeeC-CCCeeeEE
Confidence 4556666666 899999999999999998864 22344444
No 125
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=36.24 E-value=1.6e+02 Score=24.38 Aligned_cols=64 Identities=13% Similarity=0.183 Sum_probs=41.9
Q ss_pred eeeeEecC--Cccc---ccc-CCCceEEEEEEeEEEEEE--CCcceE---EEEcCC-cEEEEcCCcEEEEEEc-CceE
Q 031987 78 SWPKWGCP--PSKF---PWT-FTATETMYLLEGKVIVYV--DGREGS---FEIGTG-DLVVFPKGMKITWDVI-EAVN 142 (149)
Q Consensus 78 ~~giWe~~--pg~f---~~h-~~~dE~~yVLEG~v~vt~--dgg~~~---~~i~aG-D~v~~PkG~~~tW~v~-e~vr 142 (149)
+.++|..+ |+.+ |.| -+..|.+.||+|++.+.. +++ +. ..+.+. +.-++|++..++-... ++++
T Consensus 10 ~~~~~~~~~~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g-~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~d~~ 86 (287)
T PRK12335 10 QMPVWNKDTLPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDG-EELSEHIFDAENQPPFIEPQAWHRIEAASDDLE 86 (287)
T ss_pred ecCCCChhhchHHHHhccCCCCCcceEEEEEeeeEEEEEECCCC-CeeeEEEEecCCCCceeCCcceEEEEEcCCCcE
Confidence 34567666 6776 333 357899999999999887 333 22 345554 4557888888777766 3344
No 126
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=35.48 E-value=77 Score=22.45 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=16.6
Q ss_pred eEEEEcCCcEEEEcCCcEEEEEE
Q 031987 115 GSFEIGTGDLVVFPKGMKITWDV 137 (149)
Q Consensus 115 ~~~~i~aGD~v~~PkG~~~tW~v 137 (149)
.+..++.||.+.|++..-...+.
T Consensus 54 ~~~~vk~GD~Vl~~~~~g~~v~~ 76 (93)
T cd00320 54 VPLSVKVGDKVLFPKYAGTEVKL 76 (93)
T ss_pred ccccccCCCEEEECCCCceEEEE
Confidence 46679999999999865333333
No 127
>PRK09978 DNA-binding transcriptional regulator GadX; Provisional
Probab=34.49 E-value=1.3e+02 Score=25.63 Aligned_cols=38 Identities=18% Similarity=0.072 Sum_probs=30.8
Q ss_pred EEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987 99 MYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA 140 (149)
Q Consensus 99 ~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~ 140 (149)
+..-|-++.++..|| +...+.|||.+++-.+- |.+...
T Consensus 10 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~---~~~~~~ 47 (274)
T PRK09978 10 IAYARHKYILTMVNG-EYRYFNGGDLVFADASQ---IRVDKC 47 (274)
T ss_pred EEEEcceEEEEEcCC-ceeEecCCcEEEEeccc---cccccc
Confidence 344578899999999 89999999999998876 665554
No 128
>COG3758 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.45 E-value=81 Score=25.88 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=43.9
Q ss_pred CccccccCCCceEEEEEEeE-EEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987 86 PSKFPWTFTATETMYLLEGK-VIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE 139 (149)
Q Consensus 86 pg~f~~h~~~dE~~yVLEG~-v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e 139 (149)
.|.|..--.+|-+.-+|||. .++..+|........+.+-+.||....+.=+-..
T Consensus 51 ~G~FS~fpGidR~lsvLeG~gm~L~~~~~~~~~l~~~~qp~aF~gD~~v~a~L~~ 105 (193)
T COG3758 51 DGPFSLFPGIDRILSVLEGGGMTLSSAGRAPVVLLRPLQPFAFAGDVPVHARLTG 105 (193)
T ss_pred CCCccccCCcceEEEEEecCceEEecCCCccceecCCCCcccccCCceEEEEEec
Confidence 56666656799999999999 9999999437888999999999999766555443
No 129
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=33.87 E-value=56 Score=20.69 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=18.5
Q ss_pred CceEEEEEEeEEEEEECCcceEEEEcCCcEEEE
Q 031987 95 ATETMYLLEGKVIVYVDGREGSFEIGTGDLVVF 127 (149)
Q Consensus 95 ~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~ 127 (149)
.--++.|..|...+.+.+. ..+.+||.+++
T Consensus 27 ~~~i~~i~R~~~~~~p~~~---~~l~~gD~l~v 56 (71)
T PF02080_consen 27 GVRIVAIKRGGEIIIPDGD---TVLQAGDILIV 56 (71)
T ss_dssp TEEEEEEEETEEEES--TT----BE-TTEEEEE
T ss_pred CEEEEEEEECCEEECCCCC---CEECCCCEEEE
Confidence 4456777788555555554 88999999886
No 130
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=33.00 E-value=83 Score=22.41 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=13.5
Q ss_pred eEEEEcCCcEEEEcCCc
Q 031987 115 GSFEIGTGDLVVFPKGM 131 (149)
Q Consensus 115 ~~~~i~aGD~v~~PkG~ 131 (149)
.+..+++||.|+|++..
T Consensus 55 ~~~~vk~GD~Vlf~~~~ 71 (95)
T PRK00364 55 VPLDVKVGDKVLFGKYA 71 (95)
T ss_pred eecccCCCCEEEEcCCC
Confidence 35579999999999744
No 131
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=32.83 E-value=30 Score=26.80 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=21.2
Q ss_pred eEEEEEECCcceEEEEcCCcEEEEcCCcEEEEE
Q 031987 104 GKVIVYVDGREGSFEIGTGDLVVFPKGMKITWD 136 (149)
Q Consensus 104 G~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~ 136 (149)
|.+.+.+=|+ ..-.++|||.+.+-+|..--|+
T Consensus 48 gsI~isvW~e-~~~~~~PGDIirLt~Gy~Si~q 79 (134)
T KOG3416|consen 48 GSINISVWDE-EGCLIQPGDIIRLTGGYASIFQ 79 (134)
T ss_pred ceEEEEEecC-cCcccCCccEEEecccchhhhc
Confidence 4455555343 4567888888888888776665
No 132
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=32.46 E-value=1.1e+02 Score=25.42 Aligned_cols=42 Identities=12% Similarity=0.291 Sum_probs=32.1
Q ss_pred CceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEc
Q 031987 95 ATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVI 138 (149)
Q Consensus 95 ~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~ 138 (149)
..++...+.|.-.=...|+ ...+.||..+.+|+|..|.+--.
T Consensus 135 ks~vtv~~dg~r~~~~ag~--~lkL~PGesitL~Pg~~HsFwae 176 (225)
T COG3822 135 KSDVTVPVDGCRQTHTAGS--QLKLSPGESITLPPGLYHSFWAE 176 (225)
T ss_pred CCCeEecCCCcEEEeccce--eEEECCCCcEecCCCceeeeeec
Confidence 4456666777766666666 89999999999999998876433
No 133
>PRK09774 fec operon regulator FecR; Reviewed
Probab=31.97 E-value=1e+02 Score=26.12 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=25.5
Q ss_pred EEEEEEeEEEEEECCc-ceEEEEcCCcEEEEcCC
Q 031987 98 TMYLLEGKVIVYVDGR-EGSFEIGTGDLVVFPKG 130 (149)
Q Consensus 98 ~~yVLEG~v~vt~dgg-~~~~~i~aGD~v~~PkG 130 (149)
-+-|+||.|++...+. +....+.||+.+.+..+
T Consensus 194 ~V~V~eG~V~v~~~~~~~~~~~L~~Gq~~~~~~~ 227 (319)
T PRK09774 194 QLAVQQHAVEVLLASAPAQKRIVNAGESLQFSAS 227 (319)
T ss_pred eEEEEEEEEEEEECCCCCcceEECCCcEEEEcCC
Confidence 4678999999987542 13567999999999765
No 134
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=31.20 E-value=50 Score=22.99 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=14.5
Q ss_pred EEEEcCCcEEEEcCCcEEEEE
Q 031987 116 SFEIGTGDLVVFPKGMKITWD 136 (149)
Q Consensus 116 ~~~i~aGD~v~~PkG~~~tW~ 136 (149)
.+..++||+++||....|.=.
T Consensus 67 ~~~p~~G~lvlFPs~l~H~v~ 87 (101)
T PF13759_consen 67 IVEPEEGDLVLFPSWLWHGVP 87 (101)
T ss_dssp EE---TTEEEEEETTSEEEE-
T ss_pred EeCCCCCEEEEeCCCCEEecc
Confidence 456789999999999988643
No 135
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=31.05 E-value=2.4e+02 Score=22.59 Aligned_cols=57 Identities=12% Similarity=0.197 Sum_probs=39.5
Q ss_pred Cccc---cccCC-CceEEEEEEeEEEEEECC---c------ceEEEEcCC--cEEEEcCCcEEEEEEcCceE
Q 031987 86 PSKF---PWTFT-ATETMYLLEGKVIVYVDG---R------EGSFEIGTG--DLVVFPKGMKITWDVIEAVN 142 (149)
Q Consensus 86 pg~f---~~h~~-~dE~~yVLEG~v~vt~dg---g------~~~~~i~aG--D~v~~PkG~~~tW~v~e~vr 142 (149)
+|.. |+|.. +.+.+.++.|++....-| + =....+++- -.+.+|+|+.|-+.+.+.-.
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~ 125 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDA 125 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCce
Confidence 5554 34333 488999999999876533 2 023455555 78999999999999886643
No 136
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=31.05 E-value=89 Score=24.44 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=27.0
Q ss_pred cCCcccccc--CCCceEEEEEEeEEEEEE--CCcc-eEEEEcCCcEEE
Q 031987 84 CPPSKFPWT--FTATETMYLLEGKVIVYV--DGRE-GSFEIGTGDLVV 126 (149)
Q Consensus 84 ~~pg~f~~h--~~~dE~~yVLEG~v~vt~--dgg~-~~~~i~aGD~v~ 126 (149)
-.+|..-++ -..+.+++|++|.+.+.. +|++ .-..+.+||.+-
T Consensus 35 ~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g 82 (236)
T PRK09392 35 FPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFI 82 (236)
T ss_pred cCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhh
Confidence 334544332 357889999999999965 2331 222477888764
No 137
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=30.42 E-value=85 Score=26.55 Aligned_cols=43 Identities=12% Similarity=0.102 Sum_probs=26.6
Q ss_pred CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEE
Q 031987 93 FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITW 135 (149)
Q Consensus 93 ~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW 135 (149)
....|=.|||+|++.+...+.....++.+|--+.-|++..|.-
T Consensus 189 h~~~eraVvI~G~~~~~~~~~~~~~~L~~GSYf~s~~~~~H~~ 231 (251)
T PF14499_consen 189 HASNERAVVISGELDYQSYGASNFGTLDPGSYFGSPGHITHGI 231 (251)
T ss_dssp --S-EEEEEEEEEEEETTEEEETTEEEEE-TT-EE--E-----
T ss_pred cCCceEEEEEEeEEEEeecccCCCccccCCcccccCCcccccc
Confidence 4689999999999999665443578999999999999977665
No 138
>PHA00663 hypothetical protein
Probab=29.41 E-value=49 Score=22.58 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=17.7
Q ss_pred CCcEEEEcCCcEEEEEEcC
Q 031987 121 TGDLVVFPKGMKITWDVIE 139 (149)
Q Consensus 121 aGD~v~~PkG~~~tW~v~e 139 (149)
+||.|-+|.|...+|-+..
T Consensus 17 ~gdvFdvpdg~kaSWfvpA 35 (68)
T PHA00663 17 PGDKFDVPDGAKASWFAPA 35 (68)
T ss_pred cCceeecCCCCeeeeEeeh
Confidence 8999999999999999864
No 139
>PHA00672 hypothetical protein
Probab=29.31 E-value=1.6e+02 Score=23.04 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=32.9
Q ss_pred CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEc
Q 031987 94 TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVI 138 (149)
Q Consensus 94 ~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~ 138 (149)
+.-|.+.+++|++++..||+ ..++..=-.+.-|+|..-...-+
T Consensus 65 hkf~~~ii~sG~itV~tdge--~~rl~g~~~i~~~aG~KragyAH 107 (152)
T PHA00672 65 IKVSTVLIFSGHATVFIGGE--AVELRGYHVIPASAGRKQAFVAH 107 (152)
T ss_pred eEeeEEEEecccEEEEeCCc--EEEEecceeeecCCCcccceeee
Confidence 34455599999999999977 88898888888888876544433
No 140
>PLN02288 mannose-6-phosphate isomerase
Probab=28.78 E-value=45 Score=29.85 Aligned_cols=20 Identities=5% Similarity=0.199 Sum_probs=17.8
Q ss_pred EEEEcCCcEEEEcCCcEEEE
Q 031987 116 SFEIGTGDLVVFPKGMKITW 135 (149)
Q Consensus 116 ~~~i~aGD~v~~PkG~~~tW 135 (149)
.+.++||+++|+|+|..|.+
T Consensus 252 ~v~L~PGeaifl~ag~~HAY 271 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAY 271 (394)
T ss_pred eEecCCCCEEEecCCCCcee
Confidence 58899999999999998875
No 141
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=27.72 E-value=28 Score=31.33 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=15.4
Q ss_pred EEEcCCcEEEEcCCcEEE
Q 031987 117 FEIGTGDLVVFPKGMKIT 134 (149)
Q Consensus 117 ~~i~aGD~v~~PkG~~~t 134 (149)
..+.|||++++|+|+.|.
T Consensus 181 ~vlepGDiLYiPp~~~H~ 198 (383)
T COG2850 181 EVLEPGDILYIPPGFPHY 198 (383)
T ss_pred hhcCCCceeecCCCCCcC
Confidence 468999999999998763
No 142
>PRK02946 aceK bifunctional isocitrate dehydrogenase kinase/phosphatase protein; Validated
Probab=27.68 E-value=23 Score=33.47 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=25.8
Q ss_pred ccCCCceEEEEEEeEEEEEECC--------cceEEEEcCCcEE
Q 031987 91 WTFTATETMYLLEGKVIVYVDG--------REGSFEIGTGDLV 125 (149)
Q Consensus 91 ~h~~~dE~~yVLEG~v~vt~dg--------g~~~~~i~aGD~v 125 (149)
.-|+|||+||+.|=.++-.+.- ++.-+.++|+|++
T Consensus 473 VFYDYDEI~ylTd~nFR~iP~pr~~e~ems~epWysVgp~DVF 515 (575)
T PRK02946 473 VFYDYDEICYLTECNFRDIPPPRYPEDEMSSEPWYSVGPGDVF 515 (575)
T ss_pred EEecccceeeecccccccCCCCCChhHhhccCCCcccCCCCcC
Confidence 3489999999998777665533 2256788999875
No 143
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=26.42 E-value=99 Score=29.66 Aligned_cols=66 Identities=18% Similarity=0.118 Sum_probs=36.9
Q ss_pred EEEeeCCChhhhhhcCCceeeeEecCCcccccc--CCCceEEEEEEeEEEEEECCcce---EEEEcCCcEEE
Q 031987 60 VKIEKNPPQSKLSELGVTSWPKWGCPPSKFPWT--FTATETMYLLEGKVIVYVDGREG---SFEIGTGDLVV 126 (149)
Q Consensus 60 V~i~~~ps~~~L~~lGv~~~giWe~~pg~f~~h--~~~dE~~yVLEG~v~vt~dgg~~---~~~i~aGD~v~ 126 (149)
+-+-++.++..+.++-... -.....||..-.. -..+++++|++|++++...+++. ...+++||.+-
T Consensus 379 ~~lF~~~s~~~l~~L~~~~-~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~FG 449 (823)
T PLN03192 379 VYLFKGVSREILLLLVTKM-KAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIFG 449 (823)
T ss_pred CcchhcCCHHHHHHHHHhh-heeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCcceeeEEccCCCEec
Confidence 3344455555554442111 1123445554332 24688999999999997643212 23589999773
No 144
>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....
Probab=24.92 E-value=17 Score=27.56 Aligned_cols=30 Identities=20% Similarity=0.496 Sum_probs=21.4
Q ss_pred EEEEEEeEE---EEEECCcceEEEEcCCcEEEEc
Q 031987 98 TMYLLEGKV---IVYVDGREGSFEIGTGDLVVFP 128 (149)
Q Consensus 98 ~~yVLEG~v---~vt~dgg~~~~~i~aGD~v~~P 128 (149)
.-|+++|+- .+..+|. ..+.+++||.+.+=
T Consensus 56 ~TYvI~g~~GSg~I~lNGa-AArl~~~GD~vII~ 88 (116)
T PF02261_consen 56 ETYVIPGERGSGVICLNGA-AARLVQVGDRVIIM 88 (116)
T ss_dssp EEEEEEESTTTT-EEEEGG-GGGCS-TT-EEEEE
T ss_pred EEEEEEccCCCcEEEECCH-HHhccCCCCEEEEE
Confidence 347888874 8888887 77899999999874
No 145
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=24.04 E-value=1.6e+02 Score=21.60 Aligned_cols=36 Identities=22% Similarity=0.305 Sum_probs=25.1
Q ss_pred CCceEEEEEEeEEEEEECCc-ceEE---EEcCCcEEEEcC
Q 031987 94 TATETMYLLEGKVIVYVDGR-EGSF---EIGTGDLVVFPK 129 (149)
Q Consensus 94 ~~dE~~yVLEG~v~vt~dgg-~~~~---~i~aGD~v~~Pk 129 (149)
..+-+++|++|.+.+..... +.+. .+++||.+-...
T Consensus 40 ~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~ 79 (214)
T COG0664 40 EADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELA 79 (214)
T ss_pred cCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHH
Confidence 34558999999999987532 1222 377999987664
No 146
>PHA02984 hypothetical protein; Provisional
Probab=23.80 E-value=3.7e+02 Score=23.41 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=36.2
Q ss_pred CCceEEEE--EEeEEEEEECCc--ceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987 94 TATETMYL--LEGKVIVYVDGR--EGSFEIGTGDLVVFPKGMKITWDVIEA 140 (149)
Q Consensus 94 ~~dE~~yV--LEG~v~vt~dgg--~~~~~i~aGD~v~~PkG~~~tW~v~e~ 140 (149)
...|.++| |+|+..+....+ .-...++.||+|++--+..|.-.....
T Consensus 90 esnEy~FvlCl~G~~~I~~~~~~~~is~~I~kGeaf~md~~t~h~i~T~~k 140 (286)
T PHA02984 90 ESNEYMFVLCLNGKTSIECFNKGSKITNTIKKGEAFTLNLKTKYVTTTKDK 140 (286)
T ss_pred eeccEEEEEEcCCeEEEEEecCCceeeeEEecCceEEEEccceEEEEeCCC
Confidence 44566665 799999988654 245679999999999999988777644
No 147
>MTH00261 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=23.71 E-value=62 Score=21.91 Aligned_cols=19 Identities=42% Similarity=0.667 Sum_probs=12.6
Q ss_pred cchhhHHHHHHHHHHHhhc
Q 031987 3 LNHTLVLSSLLVLLLSLLS 21 (149)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ 21 (149)
+||-.||--|..+|..|+|
T Consensus 10 ~nhyfvllllf~iliilis 28 (68)
T MTH00261 10 FNHYFVLLLLFFILIILIS 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6898887766655555544
No 148
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=23.35 E-value=1.1e+02 Score=25.42 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=23.6
Q ss_pred eEEEEEECCcceEEEEcCCcEEEEcCCcEEEEE
Q 031987 104 GKVIVYVDGREGSFEIGTGDLVVFPKGMKITWD 136 (149)
Q Consensus 104 G~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~ 136 (149)
|++.+..-=|...+.+-|||+|.+|.-..|.-.
T Consensus 133 GeLVv~dtYg~h~VklPAGdLVlypStSlH~Vt 165 (229)
T COG3128 133 GELVVNDTYGNHRVKLPAGDLVLYPSTSLHEVT 165 (229)
T ss_pred ceEEEeccccceEEeccCCCEEEcccccceecc
Confidence 555555543446889999999999988776543
No 149
>PRK04980 hypothetical protein; Provisional
Probab=23.16 E-value=59 Score=23.98 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=23.4
Q ss_pred EEEeEEEEEECCcceEEEEcCCcEEEEc
Q 031987 101 LLEGKVIVYVDGREGSFEIGTGDLVVFP 128 (149)
Q Consensus 101 VLEG~v~vt~dgg~~~~~i~aGD~v~~P 128 (149)
||+|.=++|..++ ..-.+++||.+.+-
T Consensus 15 ILsGkKTiTiRd~-se~~~~~G~~~~V~ 41 (102)
T PRK04980 15 ILAGRKTITIRDE-SESHFKPGDVLRVG 41 (102)
T ss_pred HHcCCceEEeeCC-cccCCCCCCEEEEE
Confidence 6899999999877 67889999999984
No 150
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=22.92 E-value=1.8e+02 Score=22.62 Aligned_cols=44 Identities=16% Similarity=0.077 Sum_probs=28.3
Q ss_pred cCCcccccc--CCCceEEEEEEeEEEEEEC--Ccce-EE-EEcCCcEEEE
Q 031987 84 CPPSKFPWT--FTATETMYLLEGKVIVYVD--GREG-SF-EIGTGDLVVF 127 (149)
Q Consensus 84 ~~pg~f~~h--~~~dE~~yVLEG~v~vt~d--gg~~-~~-~i~aGD~v~~ 127 (149)
-.+|..-.+ -..+.+++|++|.+.+... +|++ .. .+.+||.+-.
T Consensus 42 ~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 42 IQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGF 91 (235)
T ss_pred ecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceecc
Confidence 445554333 3468899999999988753 3323 22 2589999854
No 151
>PF15312 JSRP: Junctional sarcoplasmic reticulum protein
Probab=22.89 E-value=74 Score=21.79 Aligned_cols=22 Identities=45% Similarity=0.439 Sum_probs=17.1
Q ss_pred CcchhhHHHHHHHHHHHhhcce
Q 031987 2 ALNHTLVLSSLLVLLLSLLSPL 23 (149)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (149)
-||..|+|.|+..||-|-+.=+
T Consensus 10 TLNkCLvlAslValL~s~fq~~ 31 (65)
T PF15312_consen 10 TLNKCLVLASLVALLGSGFQLC 31 (65)
T ss_pred chhhHHHHHHHHHHHHHHHHHH
Confidence 4899999999888887766543
No 152
>COG3712 FecR Fe2+-dicitrate sensor, membrane component [Inorganic ion transport and metabolism / Signal transduction mechanisms]
Probab=22.56 E-value=85 Score=27.54 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=27.2
Q ss_pred CCCceEEEEEEeEEEEEECCcc--eEEEEcCCcEEEEc
Q 031987 93 FTATETMYLLEGKVIVYVDGRE--GSFEIGTGDLVVFP 128 (149)
Q Consensus 93 ~~~dE~~yVLEG~v~vt~dgg~--~~~~i~aGD~v~~P 128 (149)
....=.+-|+||+|++...++. +.. +++|+.+.|-
T Consensus 192 ~~~~t~V~v~eG~V~v~~~~~~~~~~v-l~aGq~~~~~ 228 (322)
T COG3712 192 EDGATRVTVLEGSVRVSPAGGRAAERV-LGAGQSVRFD 228 (322)
T ss_pred cCCcEEEEEEeeeEEEecCCCcccchh-cCCCeeEEec
Confidence 3455567789999999999862 334 9999998887
No 153
>COG5583 Uncharacterized small protein [Function unknown]
Probab=22.50 E-value=1.2e+02 Score=19.99 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=22.1
Q ss_pred eEEEEEECCcceEEEEcCCcEEEEcCC
Q 031987 104 GKVIVYVDGREGSFEIGTGDLVVFPKG 130 (149)
Q Consensus 104 G~v~vt~dgg~~~~~i~aGD~v~~PkG 130 (149)
|++++++.+| ....+.+-+-+.|+..
T Consensus 24 GsV~ItVhdg-qViQIE~~EK~Rl~q~ 49 (54)
T COG5583 24 GSVTITVHDG-QVIQIEASEKVRLRQN 49 (54)
T ss_pred ceEEEEEECC-EEEEEehhhheecccc
Confidence 8999999888 7888988888888765
No 154
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=22.07 E-value=62 Score=24.75 Aligned_cols=17 Identities=24% Similarity=0.669 Sum_probs=14.2
Q ss_pred eEEEEcCCcEEEEcCCc
Q 031987 115 GSFEIGTGDLVVFPKGM 131 (149)
Q Consensus 115 ~~~~i~aGD~v~~PkG~ 131 (149)
....+++||.+++|+.+
T Consensus 148 ~n~~L~~gD~I~Vp~~~ 164 (165)
T TIGR03027 148 ANVELKPGDVLIIPESW 164 (165)
T ss_pred CCceeCCCCEEEEeccc
Confidence 35789999999999853
No 155
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=21.99 E-value=3.2e+02 Score=19.93 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=18.6
Q ss_pred EeEEEEEECCc-ceEEEEcCCcEEEEcCCc
Q 031987 103 EGKVIVYVDGR-EGSFEIGTGDLVVFPKGM 131 (149)
Q Consensus 103 EG~v~vt~dgg-~~~~~i~aGD~v~~PkG~ 131 (149)
+|++.-.-.|. ..+..+++||.|+|++-.
T Consensus 46 ~g~VvAVG~G~~~~~~~Vk~GD~Vl~~~y~ 75 (100)
T PTZ00414 46 EGTVVAVAAATKDWTPTVKVGDTVLLPEFG 75 (100)
T ss_pred eeEEEEECCCCccccceecCCCEEEEcCCC
Confidence 45554444332 125789999999999744
No 156
>TIGR03021 pilP_fam type IV pilus biogenesis protein PilP. Members of this protein family are found in type IV pilus biogenesis loci and include proteins designated PilP.
Probab=21.81 E-value=1.6e+02 Score=22.05 Aligned_cols=27 Identities=22% Similarity=0.506 Sum_probs=20.3
Q ss_pred EEEEEECCcceEEEEcCCcEEEEcC-CcEEE
Q 031987 105 KVIVYVDGREGSFEIGTGDLVVFPK-GMKIT 134 (149)
Q Consensus 105 ~v~vt~dgg~~~~~i~aGD~v~~Pk-G~~~t 134 (149)
.+++...|| ...++++||. +|. |++..
T Consensus 82 ~A~l~l~~G-~~~~v~~G~~--lpgt~~~V~ 109 (119)
T TIGR03021 82 TATLRLPGG-REVDVQVGDS--LPGTGYKVK 109 (119)
T ss_pred EEEEEeCCC-cEEEecCCCc--cCCCCcEEE
Confidence 466777666 6899999998 777 66654
No 157
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=21.68 E-value=1.7e+02 Score=20.83 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=16.1
Q ss_pred EEEEcCCcEEEEcCCcEEEEEEc
Q 031987 116 SFEIGTGDLVVFPKGMKITWDVI 138 (149)
Q Consensus 116 ~~~i~aGD~v~~PkG~~~tW~v~ 138 (149)
+..+++||.|+|++-.-...+..
T Consensus 51 ~~~Vk~GD~Vl~~~y~g~ev~~~ 73 (91)
T PRK14533 51 DFDIKVGDKVIFSKYAGTEIKID 73 (91)
T ss_pred cccccCCCEEEEccCCCeEEEEC
Confidence 56799999999998443333333
No 158
>TIGR02596 Verrucomicrobium spinosum paralogous family TIGR02596. This model describes a nearly twenty member protein family unique to Verrucomicrobium spinosum. All members share a type IV pilin-like N-terminal leader sequence (TIGR02532). Sequences are from 207 to 248 in length. The function is unknown.
Probab=21.23 E-value=50 Score=26.88 Aligned_cols=37 Identities=14% Similarity=0.221 Sum_probs=21.9
Q ss_pred eeeeEEEeeCCChhhhh-hcCCceeeeEecCCcc-cccc
Q 031987 56 EIFGVKIEKNPPQSKLS-ELGVTSWPKWGCPPSK-FPWT 92 (149)
Q Consensus 56 ~~~~V~i~~~ps~~~L~-~lGv~~~giWe~~pg~-f~~h 92 (149)
...++++.+.++...-. ......+.+|.-++.. ..|+
T Consensus 56 ~~V~l~f~~~~~~~~~~~~~~~r~~q~~~~~~~~~~~~~ 94 (195)
T TIGR02596 56 RPVEVRFYRRADDAGPGSALGFRGFQLMVPEPTAKGKWR 94 (195)
T ss_pred CeEEEEEEecCCCCCCCcccceeeEEEEEecCCcccccc
Confidence 44577777765544332 2334447788888766 5664
No 159
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=20.13 E-value=1.1e+02 Score=25.61 Aligned_cols=38 Identities=29% Similarity=0.632 Sum_probs=25.6
Q ss_pred EEEEEeEEEEEECCcceEEEEc--C-----CcE--------EEEcCCcEEEEEEc
Q 031987 99 MYLLEGKVIVYVDGREGSFEIG--T-----GDL--------VVFPKGMKITWDVI 138 (149)
Q Consensus 99 ~yVLEG~v~vt~dgg~~~~~i~--a-----GD~--------v~~PkG~~~tW~v~ 138 (149)
-.++||.+.++..++ ..++. . ||. -+||.+..++|+..
T Consensus 19 ~w~~eG~~~~t~~~~--~m~l~~~~~~e~~~~~~hfVlW~p~~Fp~~i~IsweF~ 71 (218)
T PF09224_consen 19 DWVAEGPAKVTFQNG--RMELSGELDPEQFGDAAHFVLWCPEVFPDDIRISWEFT 71 (218)
T ss_dssp T-EEEESEEEE-GGG--SEEEE------ESSTT--EEEE-SS-B-SSEEEEEEEE
T ss_pred hhhccCCeEEeecCC--cEEEeeeeccccccccccEEEECcccCCCCeEEEEEEE
Confidence 358899999999888 56655 2 221 46899999999976
Done!