Query 031988
Match_columns 149
No_of_seqs 169 out of 2230
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 12:52:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031988.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031988hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 2.9E-23 9.8E-28 132.8 9.8 75 75-149 17-91 (99)
2 3s8s_A Histone-lysine N-methyl 99.9 9.8E-23 3.4E-27 132.7 10.3 76 74-149 3-78 (110)
3 2la6_A RNA-binding protein FUS 99.9 1.7E-21 6E-26 124.1 11.5 79 71-149 7-93 (99)
4 3p5t_L Cleavage and polyadenyl 99.9 5.2E-22 1.8E-26 124.6 7.3 72 78-149 2-75 (90)
5 1x5u_A Splicing factor 3B subu 99.9 3.7E-21 1.3E-25 123.7 11.0 78 72-149 10-87 (105)
6 2dnz_A Probable RNA-binding pr 99.9 5.8E-21 2E-25 120.6 11.5 76 74-149 2-77 (95)
7 2jrs_A RNA-binding protein 39; 99.9 5.2E-21 1.8E-25 124.0 11.5 79 71-149 20-98 (108)
8 2cpz_A CUG triplet repeat RNA- 99.9 3.9E-21 1.3E-25 125.6 10.7 78 72-149 20-97 (115)
9 3mdf_A Peptidyl-prolyl CIS-tra 99.9 2.1E-21 7.2E-26 120.2 8.7 76 74-149 4-79 (85)
10 2dgs_A DAZ-associated protein 99.9 8.4E-21 2.9E-25 120.8 11.5 75 74-149 7-81 (99)
11 1p27_B RNA-binding protein 8A; 99.9 4.7E-21 1.6E-25 123.4 10.4 76 74-149 20-95 (106)
12 3ns6_A Eukaryotic translation 99.9 8.4E-22 2.9E-26 126.0 6.8 75 75-149 4-85 (100)
13 1x4e_A RNA binding motif, sing 99.9 1.3E-21 4.5E-26 121.3 7.5 76 74-149 2-77 (85)
14 3bs9_A Nucleolysin TIA-1 isofo 99.9 3E-21 1E-25 120.0 9.1 75 75-149 4-78 (87)
15 2dnm_A SRP46 splicing factor; 99.9 3.9E-21 1.3E-25 123.2 9.7 77 73-149 9-85 (103)
16 2dnh_A Bruno-like 5, RNA bindi 99.9 1.7E-20 5.9E-25 120.5 12.5 76 73-149 11-89 (105)
17 2x1f_A MRNA 3'-END-processing 99.9 4E-21 1.4E-25 121.8 9.3 74 76-149 1-74 (96)
18 2cqc_A Arginine/serine-rich sp 99.9 4.2E-21 1.4E-25 121.2 9.4 77 73-149 11-87 (95)
19 2cph_A RNA binding motif prote 99.9 1.1E-20 3.7E-25 121.8 11.4 78 72-149 10-89 (107)
20 3md1_A Nuclear and cytoplasmic 99.9 5.1E-21 1.7E-25 117.9 9.4 72 78-149 2-73 (83)
21 2cq0_A Eukaryotic translation 99.8 5.3E-21 1.8E-25 122.6 9.7 77 73-149 11-87 (103)
22 2div_A TRNA selenocysteine ass 99.8 6.8E-21 2.3E-25 121.2 10.0 75 74-148 6-81 (99)
23 3ulh_A THO complex subunit 4; 99.8 6E-21 2.1E-25 123.1 9.9 76 73-149 25-100 (107)
24 1s79_A Lupus LA protein; RRM, 99.8 5.2E-21 1.8E-25 123.1 9.5 74 74-149 8-81 (103)
25 2lkz_A RNA-binding protein 5; 99.8 9.4E-22 3.2E-26 124.8 5.9 76 74-149 6-87 (95)
26 2do4_A Squamous cell carcinoma 99.8 1.2E-20 4.1E-25 120.3 10.9 76 73-149 13-88 (100)
27 1x5s_A Cold-inducible RNA-bind 99.8 8.8E-21 3E-25 121.3 10.3 76 74-149 9-84 (102)
28 1whw_A Hypothetical protein ri 99.8 5E-21 1.7E-25 121.8 9.0 76 74-149 5-80 (99)
29 2e5h_A Zinc finger CCHC-type a 99.8 5.9E-21 2E-25 120.3 9.2 77 73-149 12-88 (94)
30 2khc_A Testis-specific RNP-typ 99.8 9.8E-21 3.4E-25 124.2 10.6 77 73-149 36-112 (118)
31 2dgp_A Bruno-like 4, RNA bindi 99.8 6.3E-21 2.1E-25 122.8 9.5 77 73-149 9-88 (106)
32 2kxn_B Transformer-2 protein h 99.8 1.2E-20 4.1E-25 126.0 11.1 77 73-149 42-118 (129)
33 4f25_A Polyadenylate-binding p 99.8 4.1E-21 1.4E-25 125.7 8.6 72 76-149 4-75 (115)
34 2dgo_A Cytotoxic granule-assoc 99.8 1.1E-20 3.8E-25 123.4 10.6 78 72-149 10-87 (115)
35 2lxi_A RNA-binding protein 10; 99.8 4.1E-22 1.4E-26 125.5 3.2 73 77-149 1-75 (91)
36 1x4h_A RNA-binding protein 28; 99.8 1.4E-20 4.6E-25 122.1 10.4 77 73-149 11-93 (111)
37 3n9u_C Cleavage and polyadenyl 99.8 7.4E-21 2.5E-25 130.9 9.2 75 75-149 53-129 (156)
38 2dhg_A TRNA selenocysteine ass 99.8 2.1E-20 7.3E-25 119.9 10.8 75 74-149 6-82 (104)
39 2d9p_A Polyadenylate-binding p 99.8 2.9E-20 1E-24 119.1 11.3 75 73-149 11-85 (103)
40 2fy1_A RNA-binding motif prote 99.8 1.8E-20 6E-25 123.0 10.0 75 74-149 4-78 (116)
41 1oo0_B CG8781-PA, drosophila Y 99.8 1E-20 3.5E-25 122.7 8.7 76 74-149 23-98 (110)
42 2m2b_A RNA-binding protein 10; 99.8 7.2E-21 2.5E-25 127.2 8.2 77 72-149 18-100 (131)
43 2ywk_A Putative RNA-binding pr 99.8 1.2E-20 4.2E-25 119.1 8.7 76 73-149 12-87 (95)
44 2krb_A Eukaryotic translation 99.8 9.4E-21 3.2E-25 116.5 8.0 71 77-149 1-78 (81)
45 1x5t_A Splicing factor 3B subu 99.8 6.9E-21 2.4E-25 120.5 7.5 75 75-149 3-78 (96)
46 2cqb_A Peptidyl-prolyl CIS-tra 99.8 6E-21 2.1E-25 122.1 7.1 76 74-149 9-84 (102)
47 1x5o_A RNA binding motif, sing 99.8 1.1E-19 3.9E-24 118.4 13.2 74 73-147 21-94 (114)
48 2cpe_A RNA-binding protein EWS 99.8 1.7E-20 5.7E-25 122.2 9.1 77 73-149 11-95 (113)
49 1u6f_A Tcubp1, RNA-binding pro 99.8 1.5E-20 5.1E-25 126.6 9.1 79 71-149 36-114 (139)
50 2cpf_A RNA binding motif prote 99.8 1.1E-20 3.9E-25 120.0 8.1 75 75-149 3-80 (98)
51 3s7r_A Heterogeneous nuclear r 99.8 1.6E-20 5.4E-25 116.8 8.6 76 73-149 7-82 (87)
52 3ex7_B RNA-binding protein 8A; 99.8 2.2E-20 7.5E-25 123.8 9.7 77 73-149 18-94 (126)
53 2mss_A Protein (musashi1); RNA 99.8 9.5E-21 3.2E-25 114.7 7.2 70 79-149 1-70 (75)
54 2j76_E EIF-4B, EIF4B, eukaryot 99.8 7.4E-21 2.5E-25 121.5 7.0 78 70-149 12-90 (100)
55 2dng_A Eukaryotic translation 99.8 3.2E-20 1.1E-24 119.0 9.9 75 73-149 11-85 (103)
56 2cqp_A RNA-binding protein 12; 99.8 9.2E-21 3.1E-25 120.4 7.2 76 74-149 12-87 (98)
57 2cq4_A RNA binding motif prote 99.8 8.3E-21 2.8E-25 123.9 7.1 75 74-149 22-96 (114)
58 1p1t_A Cleavage stimulation fa 99.8 6.5E-21 2.2E-25 122.3 6.4 76 74-149 5-80 (104)
59 2kt5_A RNA and export factor-b 99.8 5.3E-20 1.8E-24 121.8 11.0 76 73-149 31-106 (124)
60 2dgv_A HnRNP M, heterogeneous 99.8 7.6E-20 2.6E-24 114.8 11.1 74 74-149 5-78 (92)
61 4a8x_A RNA-binding protein wit 99.8 1.6E-20 5.5E-25 116.8 7.8 74 76-149 3-77 (88)
62 3ucg_A Polyadenylate-binding p 99.8 2.5E-20 8.5E-25 116.3 8.6 73 76-149 5-77 (89)
63 2cqd_A RNA-binding region cont 99.8 4.7E-20 1.6E-24 120.6 10.1 78 71-149 11-88 (116)
64 2do0_A HnRNP M, heterogeneous 99.8 6.5E-20 2.2E-24 119.5 10.8 76 73-149 11-86 (114)
65 2dh8_A DAZ-associated protein 99.8 2.6E-20 8.9E-25 119.8 8.3 77 72-149 11-87 (105)
66 1wi8_A EIF-4B, eukaryotic tran 99.8 4E-20 1.4E-24 118.8 8.9 74 74-149 12-86 (104)
67 2ek1_A RNA-binding protein 12; 99.8 9E-21 3.1E-25 119.7 5.7 76 74-149 12-87 (95)
68 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.8E-20 6.2E-25 113.9 6.4 71 78-149 1-71 (77)
69 1wg5_A Heterogeneous nuclear r 99.8 1E-19 3.4E-24 117.1 10.2 74 74-149 12-86 (104)
70 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 5.7E-20 1.9E-24 123.6 9.3 77 73-149 59-135 (140)
71 2cq3_A RNA-binding protein 9; 99.8 2.1E-19 7.2E-24 115.1 11.4 76 72-149 10-85 (103)
72 2rs2_A Musashi-1, RNA-binding 99.8 2.4E-20 8.1E-25 121.1 6.8 78 70-148 18-95 (109)
73 1wel_A RNA-binding protein 12; 99.8 4.2E-20 1.4E-24 122.4 7.7 75 74-149 22-96 (124)
74 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.2E-19 4E-24 124.6 10.2 76 74-149 36-111 (156)
75 1wez_A HnRNP H', FTP-3, hetero 99.8 7.5E-20 2.6E-24 117.4 8.5 73 74-149 12-84 (102)
76 2ki2_A SS-DNA binding protein 99.8 1.5E-20 5E-25 117.7 4.9 71 78-149 2-72 (90)
77 2kn4_A Immunoglobulin G-bindin 99.8 7.7E-20 2.6E-24 125.5 8.9 76 74-149 67-142 (158)
78 2err_A Ataxin-2-binding protei 99.8 6.8E-20 2.3E-24 118.8 8.0 77 71-149 23-99 (109)
79 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.5E-19 5.2E-24 115.7 9.6 76 72-149 10-85 (103)
80 2nlw_A Eukaryotic translation 99.8 5.5E-20 1.9E-24 118.5 7.2 72 74-147 12-89 (105)
81 2cqg_A TDP-43, TAR DNA-binding 99.8 2E-19 6.8E-24 115.2 9.7 75 72-148 10-84 (103)
82 4f02_A Polyadenylate-binding p 99.8 1.2E-19 4E-24 130.4 9.5 76 74-149 12-87 (213)
83 1sjq_A Polypyrimidine tract-bi 99.8 1.2E-19 4.1E-24 116.8 8.5 70 74-149 13-84 (105)
84 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.5E-19 5.3E-24 125.2 9.7 77 73-149 68-144 (165)
85 1x4a_A Splicing factor, argini 99.8 4.3E-19 1.5E-23 114.8 11.2 74 73-149 18-91 (109)
86 3q2s_C Cleavage and polyadenyl 99.8 9.1E-20 3.1E-24 132.6 8.7 74 76-149 67-142 (229)
87 2jwn_A Embryonic polyadenylate 99.8 1.1E-19 3.7E-24 120.1 8.1 73 76-149 35-107 (124)
88 2dgw_A Probable RNA-binding pr 99.8 1.7E-19 5.6E-24 113.1 8.5 73 74-149 7-79 (91)
89 2dis_A Unnamed protein product 99.8 1.5E-19 5E-24 116.9 8.3 76 74-149 5-84 (109)
90 2cpy_A RNA-binding protein 12; 99.8 5.8E-20 2E-24 120.0 6.3 74 74-149 12-86 (114)
91 2a3j_A U1 small nuclear ribonu 99.8 2.8E-19 9.6E-24 119.0 9.7 73 74-149 26-102 (127)
92 1x4b_A Heterogeneous nuclear r 99.8 6.8E-20 2.3E-24 119.8 6.6 75 74-149 24-98 (116)
93 2lmi_A GRSF-1, G-rich sequence 99.8 9.3E-20 3.2E-24 117.8 7.1 74 74-149 8-84 (107)
94 2hgl_A HNRPF protein, heteroge 99.8 7.5E-20 2.6E-24 123.1 6.6 74 74-149 41-117 (136)
95 2lea_A Serine/arginine-rich sp 99.8 6.1E-20 2.1E-24 123.4 6.1 77 73-149 43-119 (135)
96 1iqt_A AUF1, heterogeneous nuc 99.8 4.7E-20 1.6E-24 111.5 5.0 70 79-149 1-70 (75)
97 2dgx_A KIAA0430 protein; RRM d 99.8 1.4E-19 5E-24 114.7 7.3 73 74-149 6-82 (96)
98 2cpi_A CCR4-NOT transcription 99.8 1.7E-19 6E-24 117.2 7.7 76 74-149 12-93 (111)
99 2dnn_A RNA-binding protein 12; 99.8 1E-19 3.5E-24 118.2 6.4 72 75-149 14-85 (109)
100 2db1_A Heterogeneous nuclear r 99.8 9.9E-20 3.4E-24 119.7 6.4 74 74-149 14-90 (118)
101 2f3j_A RNA and export factor b 99.8 9.4E-19 3.2E-23 122.7 11.4 76 73-149 84-159 (177)
102 1fj7_A Nucleolin RBD1, protein 99.8 2.8E-20 9.6E-25 118.8 2.9 75 73-149 13-87 (101)
103 3lqv_A PRE-mRNA branch site pr 99.8 9.9E-19 3.4E-23 114.0 10.3 73 74-149 5-77 (115)
104 3r27_A HnRNP L, heterogeneous 99.8 3E-19 1E-23 113.9 7.5 70 73-148 17-88 (100)
105 1wex_A Hypothetical protein (r 99.8 1.1E-18 3.9E-23 112.3 10.2 70 74-149 12-83 (104)
106 2cq1_A PTB-like protein L; RRM 99.8 1.6E-18 5.4E-23 111.0 10.3 71 73-149 11-83 (101)
107 2cpx_A Hypothetical protein FL 99.8 2.1E-19 7E-24 117.2 6.2 76 74-149 22-97 (115)
108 2ytc_A PRE-mRNA-splicing facto 99.8 1.2E-18 3.9E-23 107.8 9.3 71 73-149 8-79 (85)
109 2cpj_A Non-POU domain-containi 99.8 1.5E-18 5.1E-23 110.4 9.9 71 73-149 11-81 (99)
110 2wbr_A GW182, gawky, LD47780P; 99.8 3.9E-19 1.3E-23 110.3 6.9 69 75-149 5-73 (89)
111 1x4d_A Matrin 3; structural ge 99.8 2.8E-19 9.7E-24 114.7 6.5 70 74-149 12-84 (102)
112 1fxl_A Paraneoplastic encephal 99.8 1.3E-18 4.6E-23 119.2 9.9 74 76-149 1-74 (167)
113 2xs2_A Deleted in azoospermia- 99.8 1.4E-19 4.8E-24 115.7 4.6 72 74-148 6-77 (102)
114 2ad9_A Polypyrimidine tract-bi 99.8 1.4E-18 4.7E-23 114.3 9.4 70 74-149 28-99 (119)
115 1x4f_A Matrin 3; structural ge 99.8 1.2E-18 4E-23 113.5 9.0 70 74-149 22-94 (112)
116 2dha_A FLJ20171 protein; RRM d 99.8 3E-19 1E-23 118.3 6.1 73 75-149 21-97 (123)
117 2e5j_A Methenyltetrahydrofolat 99.8 2.4E-18 8.2E-23 109.1 10.1 71 74-149 16-86 (97)
118 2fc9_A NCL protein; structure 99.8 8.2E-19 2.8E-23 111.9 7.9 73 73-149 11-83 (101)
119 2dnq_A RNA-binding protein 4B; 99.8 2.7E-18 9.2E-23 107.4 10.0 68 74-149 5-72 (90)
120 2hgm_A HNRPF protein, heteroge 99.8 1.1E-18 3.7E-23 116.0 8.6 73 74-149 39-113 (126)
121 2jvo_A Nucleolar protein 3; nu 99.8 1.2E-18 4E-23 112.9 8.5 71 71-149 25-95 (108)
122 1why_A Hypothetical protein ri 99.8 5.1E-18 1.7E-22 107.5 11.1 70 74-149 14-85 (97)
123 2fc8_A NCL protein; structure 99.8 1.9E-18 6.6E-23 110.3 9.1 74 73-149 11-84 (102)
124 2j8a_A Histone-lysine N-methyl 99.8 2.7E-19 9.4E-24 118.1 5.1 72 78-149 3-88 (136)
125 1nu4_A U1A RNA binding domain; 99.8 3.6E-19 1.2E-23 112.7 5.2 73 74-149 5-81 (97)
126 2lcw_A RNA-binding protein FUS 99.6 2.9E-20 9.8E-25 121.7 0.0 76 74-149 4-87 (116)
127 2hgn_A Heterogeneous nuclear r 99.8 3.3E-19 1.1E-23 120.4 5.2 73 74-149 43-115 (139)
128 1b7f_A Protein (SXL-lethal pro 99.8 1.5E-18 5.3E-23 119.2 8.5 74 76-149 2-75 (168)
129 2xnq_A Nuclear polyadenylated 99.8 2.8E-18 9.6E-23 109.0 9.1 71 71-149 16-87 (97)
130 1x4c_A Splicing factor, argini 99.8 2.5E-18 8.4E-23 111.2 8.7 66 74-146 12-77 (108)
131 3md3_A Nuclear and cytoplasmic 99.8 5.7E-18 1.9E-22 115.9 11.0 77 73-149 83-159 (166)
132 2jvr_A Nucleolar protein 3; RN 99.8 4.5E-19 1.6E-23 115.4 5.1 72 74-149 25-97 (111)
133 2dnl_A Cytoplasmic polyadenyla 99.8 1.3E-18 4.3E-23 113.6 6.8 70 74-144 5-80 (114)
134 2i2y_A Fusion protein consists 99.8 5.2E-18 1.8E-22 115.6 9.9 73 72-149 68-140 (150)
135 2la4_A Nuclear and cytoplasmic 99.8 3.5E-18 1.2E-22 109.0 8.4 70 74-149 24-93 (101)
136 2hvz_A Splicing factor, argini 99.8 1.6E-18 5.6E-23 110.5 6.9 67 78-149 1-67 (101)
137 1whx_A Hypothetical protein ri 99.8 1.7E-18 5.8E-23 112.6 7.0 69 75-149 8-76 (111)
138 1l3k_A Heterogeneous nuclear r 99.8 2.7E-18 9.2E-23 120.9 8.6 76 73-149 9-84 (196)
139 3pgw_S U1-70K; protein-RNA com 99.8 3.3E-18 1.1E-22 134.9 9.7 76 74-149 99-174 (437)
140 2g4b_A Splicing factor U2AF 65 99.8 5.8E-18 2E-22 116.9 9.8 76 74-149 91-166 (172)
141 1x4g_A Nucleolysin TIAR; struc 99.8 3.9E-18 1.3E-22 110.3 8.3 70 74-149 22-91 (109)
142 3beg_B Splicing factor, argini 99.7 3E-18 1E-22 112.1 7.6 67 75-148 14-80 (115)
143 2qfj_A FBP-interacting repress 99.7 9.4E-18 3.2E-22 119.7 10.8 75 75-149 123-197 (216)
144 2kvi_A Nuclear polyadenylated 99.7 6.7E-18 2.3E-22 106.9 8.7 68 74-149 7-75 (96)
145 2qfj_A FBP-interacting repress 99.7 9E-18 3.1E-22 119.8 10.2 75 75-149 26-100 (216)
146 2e44_A Insulin-like growth fac 99.7 8.8E-18 3E-22 106.1 8.5 72 74-149 12-84 (96)
147 2e5g_A U6 snRNA-specific termi 99.7 1.2E-17 4.2E-22 105.2 9.1 70 74-149 5-74 (94)
148 2cpd_A Apobec-1 stimulating pr 99.7 1.7E-17 5.7E-22 105.5 9.6 70 72-149 10-81 (99)
149 2cq2_A Hypothetical protein LO 99.7 2.5E-18 8.6E-23 112.1 5.8 65 74-144 22-88 (114)
150 1wf1_A RNA-binding protein RAL 99.7 2.1E-17 7.2E-22 107.0 10.1 68 74-149 24-92 (110)
151 1fxl_A Paraneoplastic encephal 99.7 2.4E-17 8.3E-22 112.9 10.9 75 74-148 85-159 (167)
152 1b7f_A Protein (SXL-lethal pro 99.7 4.5E-17 1.5E-21 111.8 12.0 76 74-149 86-163 (168)
153 1fjc_A Nucleolin RBD2, protein 99.7 1.1E-18 3.9E-23 110.2 3.6 71 74-149 13-83 (96)
154 2yh0_A Splicing factor U2AF 65 99.7 1.7E-17 5.8E-22 116.9 9.9 76 74-149 111-186 (198)
155 3nmr_A Cugbp ELAV-like family 99.7 2.1E-17 7.1E-22 114.1 10.1 70 76-145 2-73 (175)
156 2dgt_A RNA-binding protein 30; 99.7 1.2E-17 4.1E-22 104.8 8.0 68 74-149 7-74 (92)
157 3md3_A Nuclear and cytoplasmic 99.7 8.1E-18 2.8E-22 115.2 7.8 71 78-149 1-71 (166)
158 3egn_A RNA-binding protein 40; 99.7 9.2E-19 3.2E-23 118.4 3.0 75 74-149 42-122 (143)
159 2dnp_A RNA-binding protein 14; 99.7 1.3E-17 4.6E-22 104.2 7.8 68 74-149 6-73 (90)
160 2dgu_A Heterogeneous nuclear r 99.7 1.1E-17 3.8E-22 107.1 7.4 68 74-149 8-75 (103)
161 1wg1_A KIAA1579 protein, homol 99.7 7.6E-18 2.6E-22 105.0 5.5 68 75-149 3-70 (88)
162 2hzc_A Splicing factor U2AF 65 99.7 1.4E-17 4.7E-22 103.3 6.4 69 74-149 3-82 (87)
163 2cjk_A Nuclear polyadenylated 99.7 1.7E-17 5.7E-22 114.0 7.4 70 76-147 2-71 (167)
164 2cqh_A IGF-II mRNA-binding pro 99.7 8.7E-18 3E-22 105.6 5.5 69 74-149 5-75 (93)
165 3nmr_A Cugbp ELAV-like family 99.7 6E-17 2.1E-21 111.8 10.2 72 74-146 92-163 (175)
166 4f02_A Polyadenylate-binding p 99.7 2.7E-17 9.3E-22 117.9 8.7 72 76-149 102-173 (213)
167 1l3k_A Heterogeneous nuclear r 99.7 4.1E-17 1.4E-21 114.8 9.3 75 74-149 101-175 (196)
168 2cjk_A Nuclear polyadenylated 99.7 1.4E-17 4.9E-22 114.4 6.2 73 76-149 86-158 (167)
169 3tyt_A Heterogeneous nuclear r 99.7 4.6E-17 1.6E-21 116.5 8.5 70 75-149 2-72 (205)
170 1x5p_A Negative elongation fac 99.7 1.1E-16 3.8E-21 101.3 9.3 68 74-149 12-79 (97)
171 2pe8_A Splicing factor 45; RRM 99.7 1.1E-16 3.9E-21 103.0 9.3 76 74-149 5-86 (105)
172 2e5i_A Heterogeneous nuclear r 99.7 3.7E-16 1.3E-20 103.4 12.0 63 79-147 27-90 (124)
173 2diu_A KIAA0430 protein; struc 99.7 1.4E-16 4.9E-21 99.7 9.0 65 75-149 6-76 (96)
174 1sjr_A Polypyrimidine tract-bi 99.7 1E-16 3.4E-21 110.6 8.8 67 76-146 45-111 (164)
175 2voo_A Lupus LA protein; RNA-b 99.7 1E-16 3.5E-21 113.7 8.8 72 76-149 108-179 (193)
176 3d2w_A TAR DNA-binding protein 99.7 9.7E-17 3.3E-21 100.3 7.6 63 74-145 8-70 (89)
177 3pgw_A U1-A; protein-RNA compl 99.7 1.9E-16 6.6E-21 117.5 10.0 74 73-149 5-82 (282)
178 2bz2_A Negative elongation fac 99.7 2E-16 6.8E-21 104.3 8.8 68 74-149 36-103 (121)
179 3zzy_A Polypyrimidine tract-bi 99.7 2.1E-16 7.1E-21 105.2 8.1 66 76-146 27-93 (130)
180 3tyt_A Heterogeneous nuclear r 99.7 1.4E-16 4.8E-21 114.0 7.8 72 75-148 121-194 (205)
181 3smz_A Protein raver-1, ribonu 99.7 4.7E-16 1.6E-20 115.6 9.9 76 74-149 92-167 (284)
182 2adc_A Polypyrimidine tract-bi 99.6 4.1E-16 1.4E-20 112.9 8.4 71 74-149 31-102 (229)
183 3u1l_A PRE-mRNA-splicing facto 99.6 6.3E-16 2.2E-20 112.8 8.3 65 74-144 131-204 (240)
184 3smz_A Protein raver-1, ribonu 99.6 7.8E-16 2.7E-20 114.4 8.9 76 73-149 180-256 (284)
185 1fje_B Nucleolin RBD12, protei 99.6 5.7E-16 2E-20 107.2 6.9 71 74-149 96-166 (175)
186 1qm9_A Polypyrimidine tract-bi 99.6 7.8E-16 2.7E-20 108.7 7.1 69 76-149 2-71 (198)
187 3sde_A Paraspeckle component 1 99.6 1.4E-15 4.8E-20 112.2 8.6 70 74-149 19-88 (261)
188 2ghp_A U4/U6 snRNA-associated 99.6 5.7E-16 2E-20 115.5 6.5 75 74-149 207-283 (292)
189 1wf0_A TDP-43, TAR DNA-binding 99.6 1.7E-16 5.7E-21 98.7 2.8 56 75-135 3-58 (88)
190 3pgw_A U1-A; protein-RNA compl 99.6 3.5E-15 1.2E-19 110.7 9.9 72 73-149 203-275 (282)
191 1fje_B Nucleolin RBD12, protei 99.6 9.7E-17 3.3E-21 111.1 0.6 75 73-149 9-83 (175)
192 1jmt_A Splicing factor U2AF 35 99.6 4E-16 1.4E-20 100.3 3.1 67 82-149 20-98 (104)
193 3sde_A Paraspeckle component 1 99.6 6.2E-15 2.1E-19 108.7 9.8 93 51-144 54-163 (261)
194 3v4m_A Splicing factor U2AF 65 99.6 3.8E-15 1.3E-19 95.9 7.5 75 75-149 3-89 (105)
195 1qm9_A Polypyrimidine tract-bi 99.6 1.3E-14 4.3E-19 102.4 10.4 71 74-149 117-189 (198)
196 2dit_A HIV TAT specific factor 99.6 1.3E-14 4.6E-19 94.1 9.2 72 74-149 12-94 (112)
197 2ghp_A U4/U6 snRNA-associated 99.6 4.6E-15 1.6E-19 110.6 7.3 74 75-149 115-189 (292)
198 3tht_A Alkylated DNA repair pr 99.6 7.6E-15 2.6E-19 112.2 8.0 66 74-145 15-82 (345)
199 3ue2_A Poly(U)-binding-splicin 99.6 1.1E-14 3.7E-19 95.6 7.4 74 76-149 19-101 (118)
200 2g4b_A Splicing factor U2AF 65 99.5 8.6E-15 2.9E-19 100.8 6.5 67 76-149 3-80 (172)
201 2adc_A Polypyrimidine tract-bi 99.5 4.4E-14 1.5E-18 102.2 10.0 71 74-149 148-220 (229)
202 2yh0_A Splicing factor U2AF 65 99.5 2E-14 7E-19 101.0 5.8 67 76-149 3-80 (198)
203 2d9o_A DNAJ (HSP40) homolog, s 99.4 2.3E-12 7.9E-17 82.0 10.5 55 87-148 27-81 (100)
204 3s6e_A RNA-binding protein 39; 99.4 1.1E-12 3.9E-17 85.4 8.0 71 75-149 5-85 (114)
205 1owx_A Lupus LA protein, SS-B, 99.3 1E-11 3.6E-16 81.3 8.1 69 73-147 14-86 (121)
206 3dxb_A Thioredoxin N-terminall 99.2 1.2E-10 4.2E-15 83.6 8.3 60 90-149 142-205 (222)
207 2dnr_A Synaptojanin-1; RRM dom 99.1 1.4E-10 4.8E-15 71.9 5.6 67 74-149 4-78 (91)
208 1ufw_A Synaptojanin 2; RNP dom 99.0 5.1E-10 1.8E-14 69.7 4.2 67 74-149 12-87 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.7 2.5E-08 8.5E-13 63.5 6.3 70 74-149 18-92 (117)
210 1uw4_A UPF3X; nonsense mediate 98.0 8.1E-05 2.8E-09 46.0 8.7 69 78-146 2-72 (91)
211 1wey_A Calcipressin 1; structu 97.6 0.0001 3.5E-09 46.5 5.1 69 75-149 3-76 (104)
212 2dhx_A Poly (ADP-ribose) polym 97.6 0.00055 1.9E-08 43.0 8.4 57 74-138 5-66 (104)
213 1whv_A Poly(A)-specific ribonu 97.6 0.00043 1.5E-08 43.1 7.7 54 77-139 16-69 (100)
214 1wwh_A Nucleoporin 35, nucleop 97.5 0.00039 1.4E-08 44.9 6.8 65 74-146 21-85 (119)
215 3ctr_A Poly(A)-specific ribonu 97.4 0.00048 1.6E-08 43.0 5.8 53 79-140 8-60 (101)
216 2l08_A Regulator of nonsense t 97.0 0.00095 3.2E-08 41.6 4.6 72 76-147 8-81 (97)
217 3pq1_A Poly(A) RNA polymerase; 96.4 0.002 6.9E-08 50.9 3.3 57 75-137 51-107 (464)
218 3p3d_A Nucleoporin 53; structu 95.9 0.0044 1.5E-07 40.6 2.4 68 78-147 8-89 (132)
219 3d45_A Poly(A)-specific ribonu 93.1 0.39 1.3E-05 38.3 7.9 55 77-140 440-494 (507)
220 1xn9_A 30S ribosomal protein S 58.3 29 0.001 21.3 6.1 47 87-134 28-79 (101)
221 2v94_A RPS24, 30S ribosomal pr 53.3 38 0.0013 21.0 5.5 47 87-134 37-88 (107)
222 1ywx_A 30S ribosomal protein S 48.9 44 0.0015 20.5 5.3 46 87-133 28-78 (102)
223 4eyt_A Telomerase associated p 46.6 46 0.0016 20.1 7.9 56 76-139 11-66 (129)
224 4e8u_A Putative uncharacterize 44.4 71 0.0024 21.6 7.5 56 79-137 14-81 (172)
225 3mfb_A Uncharacterized protein 41.2 53 0.0018 21.9 4.8 37 89-125 3-42 (157)
226 2xzm_P RPS24E; ribosome, trans 38.3 79 0.0027 20.8 5.2 46 87-133 31-81 (149)
227 3u5c_Y RP50, 40S ribosomal pro 37.6 82 0.0028 20.4 6.6 46 87-133 33-83 (135)
228 2i9x_A Putative septation prot 35.7 61 0.0021 19.3 4.0 26 103-128 5-30 (87)
229 2ia9_A Putative septation prot 29.9 82 0.0028 19.2 4.0 26 103-128 5-30 (100)
230 2i9z_A Putative septation prot 29.9 84 0.0029 19.4 4.0 26 103-128 5-30 (105)
231 3lpe_A Putative transcription 29.7 39 0.0013 20.1 2.5 34 104-142 40-73 (92)
232 2g1d_A 30S ribosomal protein S 29.5 43 0.0015 20.4 2.7 46 87-133 29-79 (98)
233 3fut_A Dimethyladenosine trans 28.9 56 0.0019 23.5 3.7 33 78-111 111-143 (271)
234 3fry_A Probable copper-exporti 28.8 73 0.0025 17.1 5.5 54 78-138 7-60 (73)
235 3ts2_A Protein LIN-28 homolog 27.7 6.5 0.00022 25.9 -1.4 28 92-127 2-29 (148)
236 3h7h_B Transcription elongatio 27.1 42 0.0014 20.7 2.3 34 103-141 40-73 (106)
237 1fme_A FSD-EY peptide; beta-BE 25.9 39 0.0013 15.0 1.4 13 90-102 14-26 (28)
238 3uzu_A Ribosomal RNA small sub 22.8 32 0.0011 24.8 1.4 34 78-111 115-148 (279)
239 1o57_A PUR operon repressor; p 22.0 2.3E+02 0.0079 20.5 6.3 41 94-139 47-87 (291)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.90 E-value=2.9e-23 Score=132.80 Aligned_cols=75 Identities=29% Similarity=0.513 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 75 ~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+++|||+|||+++++++|+++|++||.|.++.+++|+.+|+++|||||+|.+.++|++|++.|||..++|+.|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l 91 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 91 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 446799999999999999999999999999999999999999999999999999999999999999999999865
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.89 E-value=9.8e-23 Score=132.67 Aligned_cols=76 Identities=14% Similarity=0.275 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|||+++++++|+++|++||.|.++.|+.|+.+|+++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i 78 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNII 78 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999999765
No 3
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.87 E-value=1.7e-21 Score=124.09 Aligned_cols=79 Identities=20% Similarity=0.356 Sum_probs=74.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEE--------EEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCC
Q 031988 71 LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVE--------VNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGK 142 (149)
Q Consensus 71 ~~~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~--------~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~ 142 (149)
.....+.++|||+|||+++++++|+++|++||.|.. +.++.++.+|+++|||||+|.+.++|++|++.|||.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 334677889999999999999999999999999999 999999889999999999999999999999999999
Q ss_pred ccCCCCC
Q 031988 143 SRASPGL 149 (149)
Q Consensus 143 ~~~~~~l 149 (149)
.+.|+.|
T Consensus 87 ~~~g~~l 93 (99)
T 2la6_A 87 EFSGNPI 93 (99)
T ss_dssp BSSSSBC
T ss_pred EeCCcEE
Confidence 9999865
No 4
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.86 E-value=5.2e-22 Score=124.58 Aligned_cols=72 Identities=17% Similarity=0.455 Sum_probs=67.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 78 TRLFVSGLSFRTSEDSLRNAFQGFG--QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 78 ~~l~v~nL~~~~~~~~l~~~F~~~G--~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
.+|||+|||+++++++|+++|++|| .|.++.++.|+.+|+++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i 75 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 75 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEE
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999875
No 5
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.7e-21 Score=123.69 Aligned_cols=78 Identities=23% Similarity=0.388 Sum_probs=73.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 72 ~~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|+..|||..+.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 345677899999999999999999999999999999999999899999999999999999999999999999999865
No 6
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=5.8e-21 Score=120.61 Aligned_cols=76 Identities=30% Similarity=0.585 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 77 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 3567899999999999999999999999999999999999899999999999999999999999999999999875
No 7
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.86 E-value=5.2e-21 Score=124.00 Aligned_cols=79 Identities=29% Similarity=0.587 Sum_probs=74.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 71 LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 71 ~~~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
+....+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3446677899999999999999999999999999999999998899999999999999999999999999999999876
No 8
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.86 E-value=3.9e-21 Score=125.63 Aligned_cols=78 Identities=24% Similarity=0.400 Sum_probs=73.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 72 ~~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....+.++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|++.|||..|.|+.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 345667899999999999999999999999999999999999899999999999999999999999999999998765
No 9
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.86 E-value=2.1e-21 Score=120.17 Aligned_cols=76 Identities=26% Similarity=0.515 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 79 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 79 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 4567899999999999999999999999999999999998899999999999999999999999999999998765
No 10
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=8.4e-21 Score=120.84 Aligned_cols=75 Identities=29% Similarity=0.582 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++ |||..+.|+.|
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l 81 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKV 81 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEE
Confidence 5677899999999999999999999999999999999999899999999999999999999998 99999999865
No 11
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.7e-21 Score=123.42 Aligned_cols=76 Identities=22% Similarity=0.517 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|+..|||..+.|+.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 95 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 95 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 4566899999999999999999999999999999999999899999999999999999999999999999999865
No 12
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.85 E-value=8.4e-22 Score=126.04 Aligned_cols=75 Identities=20% Similarity=0.445 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCC------CCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCC-C
Q 031988 75 QPKTRLFVSGLSF------RTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRAS-P 147 (149)
Q Consensus 75 ~~~~~l~v~nL~~------~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~-~ 147 (149)
...++|||+|||. .+++++|+++|++||.|.++.|+.|+.||+++|||||+|.+.++|++|++.|||..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3457999999999 99999999999999999999999999999999999999999999999999999999998 7
Q ss_pred CC
Q 031988 148 GL 149 (149)
Q Consensus 148 ~l 149 (149)
.|
T Consensus 84 ~l 85 (100)
T 3ns6_A 84 RL 85 (100)
T ss_dssp BC
T ss_pred EE
Confidence 64
No 13
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.3e-21 Score=121.27 Aligned_cols=76 Identities=18% Similarity=0.451 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|||+.+++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 77 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMA 77 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEE
Confidence 3567899999999999999999999999999999999998899999999999999999999999999999998764
No 14
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.85 E-value=3e-21 Score=119.95 Aligned_cols=75 Identities=21% Similarity=0.437 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 75 ~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
.+.++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 78 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 456799999999999999999999999999999999998899999999999999999999999999999998764
No 15
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=3.9e-21 Score=123.25 Aligned_cols=77 Identities=31% Similarity=0.542 Sum_probs=73.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...+.++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 35667899999999999999999999999999999999999899999999999999999999999999999999875
No 16
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.85 E-value=1.7e-20 Score=120.53 Aligned_cols=76 Identities=26% Similarity=0.484 Sum_probs=71.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCC---CCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRAS---PGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~---~~l 149 (149)
...+.++|||+|||+.+++++|+++|++||.|..+.++.++ +|+++|||||+|.+.++|++|++.|||..+.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34567899999999999999999999999999999999998 89999999999999999999999999999987 654
No 17
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.85 E-value=4e-21 Score=121.77 Aligned_cols=74 Identities=19% Similarity=0.491 Sum_probs=70.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 76 ~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
+.++|||+|||..+++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|.+|++.|||..++|+.|
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 74 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFL 74 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 45799999999999999999999999999999999999899999999999999999999999999999998764
No 18
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.2e-21 Score=121.18 Aligned_cols=77 Identities=31% Similarity=0.550 Sum_probs=72.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 35667899999999999999999999999999999999999899999999999999999999999999999998754
No 19
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=121.82 Aligned_cols=78 Identities=23% Similarity=0.500 Sum_probs=73.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeec-CCCCCCceEEEEEeCCHHHHHHHHHHh-CCCccCCCCC
Q 031988 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMD-KIANRPRGFAFLRYATEEESRRAIEGM-HGKSRASPGL 149 (149)
Q Consensus 72 ~~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~-~~~g~~~g~~fV~f~~~~~a~~Al~~l-~g~~~~~~~l 149 (149)
....+.++|||+|||+.+++++|+++|++||.|..+.++.+ +.+|+++|||||+|.+.++|++|+..| ||..+.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34667789999999999999999999999999999999999 789999999999999999999999999 9999999865
No 20
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=5.1e-21 Score=117.92 Aligned_cols=72 Identities=25% Similarity=0.574 Sum_probs=69.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 78 ~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
.+|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|+..|||..++|+.|
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 73 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 73 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 589999999999999999999999999999999998899999999999999999999999999999998764
No 21
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.3e-21 Score=122.63 Aligned_cols=77 Identities=30% Similarity=0.499 Sum_probs=72.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|+..|||..|.|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL 87 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 35677899999999999999999999999999999999998899999999999999999999999999999998765
No 22
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=6.8e-21 Score=121.23 Aligned_cols=75 Identities=19% Similarity=0.433 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeE-EEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLV-EVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPG 148 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~-~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~ 148 (149)
..+.++|||+|||+++++++|+++|++||.|. ++.++.++.+|+++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 45678999999999999999999999999999 9999999999999999999999999999999999999999986
No 23
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.85 E-value=6e-21 Score=123.10 Aligned_cols=76 Identities=21% Similarity=0.404 Sum_probs=71.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...+.++|||+|||+.+++++|+++|.+||.|.++.++.++ +|+++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 100 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 100 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 35677899999999999999999999999999999999998 99999999999999999999999999999998765
No 24
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.2e-21 Score=123.09 Aligned_cols=74 Identities=14% Similarity=0.307 Sum_probs=69.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....++|||+|||+++++++|+++|++||.|.+|.++.|+. |+++|||||+|.+.++|.+|+. ++|..+.|+.|
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l 81 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDL 81 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEE
Confidence 45567999999999999999999999999999999999986 9999999999999999999999 99999999875
No 25
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=9.4e-22 Score=124.83 Aligned_cols=76 Identities=16% Similarity=0.328 Sum_probs=68.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCC--eEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCc----cCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQ--LVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKS----RASP 147 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~--i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~----~~~~ 147 (149)
...-.+|||+|||+++++++|+++|++||. |.+|++++|+.+|+++|||||+|.+.++|++|++.|||.. ++|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 455569999999999999999999999995 6789999999999999999999999999999999999974 7776
Q ss_pred CC
Q 031988 148 GL 149 (149)
Q Consensus 148 ~l 149 (149)
.|
T Consensus 86 ~i 87 (95)
T 2lkz_A 86 TI 87 (95)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 26
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=120.35 Aligned_cols=76 Identities=28% Similarity=0.584 Sum_probs=71.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...+.++|||+|||+.+++++|+++|++||.|..+.++.++ +|+++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 88 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENII 88 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 35667899999999999999999999999999999999998 99999999999999999999999999999998754
No 27
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.8e-21 Score=121.32 Aligned_cols=76 Identities=37% Similarity=0.673 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 84 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 5667899999999999999999999999999999999999899999999999999999999999999999999875
No 28
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=5e-21 Score=121.84 Aligned_cols=76 Identities=30% Similarity=0.583 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRML 80 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 4667899999999999999999999999999999999999899999999999999999999999999999998754
No 29
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=5.9e-21 Score=120.34 Aligned_cols=77 Identities=21% Similarity=0.465 Sum_probs=72.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 35677899999999999999999999999999999999999899999999999999999999999999999998754
No 30
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.85 E-value=9.8e-21 Score=124.17 Aligned_cols=77 Identities=21% Similarity=0.413 Sum_probs=72.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...+.++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 45667899999999999999999999999999999999998899999999999999999999999999999999765
No 31
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.85 E-value=6.3e-21 Score=122.81 Aligned_cols=77 Identities=22% Similarity=0.466 Sum_probs=71.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCcc---CCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSR---ASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~---~~~~l 149 (149)
...+.++|||+|||+.+++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|.+|++.|||..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 456778999999999999999999999999999999999998999999999999999999999999999987 66654
No 32
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.85 E-value=1.2e-20 Score=126.01 Aligned_cols=77 Identities=31% Similarity=0.550 Sum_probs=73.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..|.|+.|
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 35667899999999999999999999999999999999999899999999999999999999999999999999875
No 33
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=4.1e-21 Score=125.74 Aligned_cols=72 Identities=26% Similarity=0.552 Sum_probs=66.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 76 ~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...+|||+|||+++++++|+++|++||.|.++.|+.|+ +.++|||||+|.+.++|++||+.|||..|.|+.|
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i 75 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 75 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 45689999999999999999999999999999999986 5589999999999999999999999999998764
No 34
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=1.1e-20 Score=123.40 Aligned_cols=78 Identities=21% Similarity=0.442 Sum_probs=73.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 72 ~~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....+.++|||+|||+.+++++|+++|.+||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 345677899999999999999999999999999999999998899999999999999999999999999999998754
No 35
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=4.1e-22 Score=125.47 Aligned_cols=73 Identities=26% Similarity=0.435 Sum_probs=66.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHh-CCCccCCCCC
Q 031988 77 KTRLFVSGLSFRTSEDSLRNAFQGFG-QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM-HGKSRASPGL 149 (149)
Q Consensus 77 ~~~l~v~nL~~~~~~~~l~~~F~~~G-~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l-~g~~~~~~~l 149 (149)
+++|||+|||+++++++|+++|++|| .|.+|.+++|+.+|+++|||||+|.+.++|++|++.+ ++..++|+.|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i 75 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKV 75 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEE
Confidence 36899999999999999999999999 7999999999999999999999999999999999977 4567887643
No 36
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=122.11 Aligned_cols=77 Identities=25% Similarity=0.467 Sum_probs=72.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhC------CCccCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMH------GKSRAS 146 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~------g~~~~~ 146 (149)
...+.++|||+|||+.+++++|+++|.+||.|..|.++.++.+|+++|||||+|.+.++|++|+..|| |..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 45677899999999999999999999999999999999999899999999999999999999999999 999988
Q ss_pred CCC
Q 031988 147 PGL 149 (149)
Q Consensus 147 ~~l 149 (149)
+.|
T Consensus 91 ~~l 93 (111)
T 1x4h_A 91 RQL 93 (111)
T ss_dssp CEE
T ss_pred EEE
Confidence 754
No 37
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.84 E-value=7.4e-21 Score=130.93 Aligned_cols=75 Identities=19% Similarity=0.405 Sum_probs=69.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFG--QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 75 ~~~~~l~v~nL~~~~~~~~l~~~F~~~G--~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...++|||+|||+++++++|+++|++|| .|.++.++.|+.+|+++|||||+|.+.++|++||..|||..|+|+.|
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l 129 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKV 129 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEe
Confidence 3567999999999999999999999999 99999999999999999999999999999999999999999999865
No 38
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=119.90 Aligned_cols=75 Identities=23% Similarity=0.418 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhc-CCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCc-cCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQG-FGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKS-RASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~-~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~-~~~~~l 149 (149)
..+.++|||+|||+++++++|+++|++ ||.|.++.++.++ +|+++|||||+|.+.++|.+|++.|||.. +.|+.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 456789999999999999999999999 9999999999998 99999999999999999999999999999 998865
No 39
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.9e-20 Score=119.14 Aligned_cols=75 Identities=29% Similarity=0.570 Sum_probs=70.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...+.++|||+|||+.+++++|+++|++||.|..+.++.+ +|+++|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 85 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3567789999999999999999999999999999999998 89999999999999999999999999999999865
No 40
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=122.97 Aligned_cols=75 Identities=31% Similarity=0.598 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|||+++++++|+++|++||.|..+.++.+. +|+++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 78 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAI 78 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 4567899999999999999999999999999999999998 99999999999999999999999999999999865
No 41
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.84 E-value=1e-20 Score=122.65 Aligned_cols=76 Identities=21% Similarity=0.437 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 98 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 98 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 4567899999999999999999999999999999999998899999999999999999999999999999998764
No 42
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.84 E-value=7.2e-21 Score=127.22 Aligned_cols=77 Identities=21% Similarity=0.348 Sum_probs=71.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEE--EEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCC----ccC
Q 031988 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVE--VNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGK----SRA 145 (149)
Q Consensus 72 ~~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~--~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~----~~~ 145 (149)
......++|||+|||+++++++|+++|++||.|.. |.|+.|+.+|+++|||||+|.+. +|.+|+..|||. .+.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34567789999999999999999999999999977 99999999999999999999999 999999999999 999
Q ss_pred CCCC
Q 031988 146 SPGL 149 (149)
Q Consensus 146 ~~~l 149 (149)
|+.|
T Consensus 97 gr~l 100 (131)
T 2m2b_A 97 GKTI 100 (131)
T ss_dssp GCCC
T ss_pred CEEE
Confidence 8875
No 43
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=119.10 Aligned_cols=76 Identities=24% Similarity=0.398 Sum_probs=71.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...+.++|||+|||+.+++++|+++|++||.|.++.++.++ +|+++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEE
Confidence 35667899999999999999999999999999999999998 49999999999999999999999999999998764
No 44
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.84 E-value=9.4e-21 Score=116.52 Aligned_cols=71 Identities=15% Similarity=0.335 Sum_probs=65.6
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCC-CC
Q 031988 77 KTRLFVSGLSFRT------SEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASP-GL 149 (149)
Q Consensus 77 ~~~l~v~nL~~~~------~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~-~l 149 (149)
+++|||+|||+.+ ++++|+++|++||.|.++.++ +.+|+++|||||+|.+.++|.+|++.|||..+.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 679999999999999999887 35899999999999999999999999999999998 65
No 45
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.9e-21 Score=120.46 Aligned_cols=75 Identities=24% Similarity=0.491 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEE-EEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEV-NLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 75 ~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~-~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
.+.++|||+|||+.+++++|+++|++||.|..+ .++.++.+|+++|||||+|.+.++|++|+..|||..+.|+.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPI 78 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 467899999999999999999999999999999 999998899999999999999999999999999999998764
No 46
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6e-21 Score=122.09 Aligned_cols=76 Identities=26% Similarity=0.515 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 84 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 4567899999999999999999999999999999999998899999999999999999999999999999988754
No 47
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.1e-19 Score=118.36 Aligned_cols=74 Identities=28% Similarity=0.513 Sum_probs=69.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASP 147 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~ 147 (149)
...+.++|||+|||+++++++|+++|++||.|..+.++.++ +|+++|||||+|.+.++|++|+..|||..+.++
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~ 94 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTP 94 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCC
Confidence 35567899999999999999999999999999999999998 999999999999999999999999999999654
No 48
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.7e-20 Score=122.16 Aligned_cols=77 Identities=23% Similarity=0.403 Sum_probs=72.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeE--------EEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCcc
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLV--------EVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSR 144 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~--------~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~ 144 (149)
...+.++|||+|||+.+++++|+++|++||.|. .+.++.++.+|+++|||||+|.+.++|++|++.|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 456778999999999999999999999999999 699999988999999999999999999999999999999
Q ss_pred CCCCC
Q 031988 145 ASPGL 149 (149)
Q Consensus 145 ~~~~l 149 (149)
.|+.|
T Consensus 91 ~g~~l 95 (113)
T 2cpe_A 91 QGSKL 95 (113)
T ss_dssp TTEEC
T ss_pred CCCEE
Confidence 98765
No 49
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.83 E-value=1.5e-20 Score=126.63 Aligned_cols=79 Identities=23% Similarity=0.441 Sum_probs=73.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 71 LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 71 ~~~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
.......++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 114 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRL 114 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3446677899999999999999999999999999999999999899999999999999999999999999999998754
No 50
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.1e-20 Score=119.97 Aligned_cols=75 Identities=24% Similarity=0.502 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCC---CCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKI---ANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 75 ~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~---~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
.+.++|||+|||+++++++|+++|++||.|..+.++.++. +++++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKL 80 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 5678999999999999999999999999999999999876 66999999999999999999999999999998764
No 51
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.83 E-value=1.6e-20 Score=116.83 Aligned_cols=76 Identities=25% Similarity=0.528 Sum_probs=69.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...+.++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++ +++..+.|+.|
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i 82 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVI 82 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEE
Confidence 35677899999999999999999999999999999999999899999999999999999999996 57888887643
No 52
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.83 E-value=2.2e-20 Score=123.82 Aligned_cols=77 Identities=22% Similarity=0.510 Sum_probs=72.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...+.++|||+|||+.+++++|+++|++||.|..|.++.++.+|+++|||||+|.+.++|++|++.|||..|.|+.|
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 35567899999999999999999999999999999999998899999999999999999999999999999999865
No 53
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.83 E-value=9.5e-21 Score=114.70 Aligned_cols=70 Identities=30% Similarity=0.598 Sum_probs=67.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 79 ~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
+|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|++ +||..+.|+.|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l 70 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMV 70 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEE
Confidence 58999999999999999999999999999999999899999999999999999999998 99999999875
No 54
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.83 E-value=7.4e-21 Score=121.54 Aligned_cols=78 Identities=19% Similarity=0.396 Sum_probs=67.4
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecC-CCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCC
Q 031988 70 SLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDK-IANRPRGFAFLRYATEEESRRAIEGMHGKSRASPG 148 (149)
Q Consensus 70 ~~~~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~-~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~ 148 (149)
........++|||+|||+++++++|+++|++|| |.++.++.++ .+|+++|||||+|.+.++|.+|+ .|||..+.|+.
T Consensus 12 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~ 89 (100)
T 2j76_E 12 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRR 89 (100)
T ss_dssp --------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBC
T ss_pred CcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeE
Confidence 334467788999999999999999999999999 9999999998 68999999999999999999999 89999999987
Q ss_pred C
Q 031988 149 L 149 (149)
Q Consensus 149 l 149 (149)
|
T Consensus 90 l 90 (100)
T 2j76_E 90 I 90 (100)
T ss_dssp C
T ss_pred E
Confidence 5
No 55
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=3.2e-20 Score=119.02 Aligned_cols=75 Identities=21% Similarity=0.445 Sum_probs=70.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...+.++|||+|||+.+++++|+++|++|| |..+.++.++.+|+++|||||+|.+.++|++|+ .|||..|.|+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 85 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSL 85 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEE
Confidence 356678999999999999999999999997 999999999989999999999999999999999 899999998764
No 56
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=9.2e-21 Score=120.39 Aligned_cols=76 Identities=17% Similarity=0.249 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....++|||+|||+.+++++|+++|.+||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..|.|+.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 87 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 4566899999999999999999999999999988888888899999999999999999999999999999998765
No 57
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8.3e-21 Score=123.88 Aligned_cols=75 Identities=20% Similarity=0.411 Sum_probs=70.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|+ .|||..|.|+.|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 96 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPI 96 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEE
Confidence 345679999999999999999999999999999999999989999999999999999999999 899999998754
No 58
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.5e-21 Score=122.26 Aligned_cols=76 Identities=24% Similarity=0.570 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRAL 80 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCB
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 3456799999999999999999999999999999999998899999999999999999999999999999999865
No 59
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.83 E-value=5.3e-20 Score=121.76 Aligned_cols=76 Identities=21% Similarity=0.401 Sum_probs=71.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
.....++|||+|||+.+++++|+++|++||.|..+.++.++ +|+++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 106 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM 106 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 35667899999999999999999999999999999999998 99999999999999999999999999999998754
No 60
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.83 E-value=7.6e-20 Score=114.76 Aligned_cols=74 Identities=19% Similarity=0.415 Sum_probs=69.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|||+.+++++|+++|++||.|..+.++.+ +|+++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 78 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREI 78 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 456789999999999999999999999999999999884 79999999999999999999999999999999865
No 61
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.83 E-value=1.6e-20 Score=116.83 Aligned_cols=74 Identities=15% Similarity=0.484 Sum_probs=69.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCC-CceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANR-PRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 76 ~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~-~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..++|||+|||+++++++|+++|++||.|.++.++.++.++. ++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 77 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEE
Confidence 457999999999999999999999999999999999987766 89999999999999999999999999999764
No 62
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.83 E-value=2.5e-20 Score=116.26 Aligned_cols=73 Identities=19% Similarity=0.532 Sum_probs=69.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 76 ~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|+ .|||..+.|+.|
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l 77 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQI 77 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEEC
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEE
Confidence 3569999999999999999999999999999999999889999999999999999999999 899999998764
No 63
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.7e-20 Score=120.62 Aligned_cols=78 Identities=27% Similarity=0.497 Sum_probs=71.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 71 LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 71 ~~~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
.....+.++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.+|+ .|.|+.|
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEE
Confidence 33466778999999999999999999999999999999999998999999999999999999999999998 7887654
No 64
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=6.5e-20 Score=119.47 Aligned_cols=76 Identities=20% Similarity=0.368 Sum_probs=71.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...+.++|||+|||+.+++++|+++|.+||.|.++.++.++ +|+++|||||+|.+.++|++|++.|||..|.|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPM 86 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEE
Confidence 35667899999999999999999999999999999999998 69999999999999999999999999999998764
No 65
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=2.6e-20 Score=119.77 Aligned_cols=77 Identities=25% Similarity=0.541 Sum_probs=71.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 72 ~~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++||.. ||..|.|+.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l 87 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNI 87 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEE
Confidence 3466778999999999999999999999999999999999988999999999999999999999998 9999988653
No 66
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4e-20 Score=118.75 Aligned_cols=74 Identities=19% Similarity=0.430 Sum_probs=69.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCC-CCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIA-NRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~-g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|||+.+++++|+++|++|| |..+.++.++.+ |+++|||||+|.+.++|++|| .|||..+.|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 45668999999999999999999999999 999999999887 999999999999999999999 899999998754
No 67
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.82 E-value=9e-21 Score=119.72 Aligned_cols=76 Identities=17% Similarity=0.251 Sum_probs=69.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l 87 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence 3456899999999999999999999999999999899988899999999999999999999999999999998765
No 68
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-20 Score=113.87 Aligned_cols=71 Identities=25% Similarity=0.576 Sum_probs=67.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 78 ~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|+..++ ..+.|+.|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l 71 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTI 71 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEE
Confidence 479999999999999999999999999999999999899999999999999999999999999 99988865
No 69
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1e-19 Score=117.06 Aligned_cols=74 Identities=22% Similarity=0.387 Sum_probs=68.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEE-EEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVE-VNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~-~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
.....+|||+|||+.+++++|+++|.+||.|.. +.|+.+ .+|+++|||||+|.+.++|++||.. |+..++|+.|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i 86 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYI 86 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEE
Confidence 456789999999999999999999999999987 888888 6999999999999999999999997 9999999865
No 70
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.82 E-value=5.7e-20 Score=123.60 Aligned_cols=77 Identities=26% Similarity=0.515 Sum_probs=72.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 35677899999999999999999999999999999999998899999999999999999999999999999998754
No 71
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.1e-19 Score=115.09 Aligned_cols=76 Identities=26% Similarity=0.580 Sum_probs=69.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 72 ~~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....+.++|||+|||+.+++++|+++|++||.|..+.++.++. .++|||||+|.+.++|++|+..|||..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3456778999999999999999999999999999999999863 389999999999999999999999999998765
No 72
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.82 E-value=2.4e-20 Score=121.05 Aligned_cols=78 Identities=23% Similarity=0.484 Sum_probs=65.9
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCC
Q 031988 70 SLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPG 148 (149)
Q Consensus 70 ~~~~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~ 148 (149)
......+.++|||+|||+.+++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|+..+ +..+.|+.
T Consensus 18 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~ 95 (109)
T 2rs2_A 18 GSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKT 95 (109)
T ss_dssp --------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEE
Confidence 3345677889999999999999999999999999999999999989999999999999999999999865 57777764
No 73
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.2e-20 Score=122.35 Aligned_cols=75 Identities=12% Similarity=0.243 Sum_probs=68.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
.....+|||+|||+.+++++|+++|.+||.|..+.++.+..+|+++|||||+|.+.++|++||. |||..|+|+.|
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 96 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFI 96 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEE
Confidence 4566899999999999999999999999999886666777799999999999999999999999 99999999875
No 74
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.81 E-value=1.2e-19 Score=124.56 Aligned_cols=76 Identities=22% Similarity=0.445 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+.|||..|.|+.|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 111 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRII 111 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999998764
No 75
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.5e-20 Score=117.41 Aligned_cols=73 Identities=19% Similarity=0.316 Sum_probs=67.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....++|||+|||+++++++|+++|++||.+ +|.|+.|+ +|+++|||||+|.+.++|++||+ +|+..|+++.|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYV 84 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEE
Confidence 4566899999999999999999999999955 99999998 99999999999999999999995 89999999865
No 76
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.81 E-value=1.5e-20 Score=117.68 Aligned_cols=71 Identities=21% Similarity=0.547 Sum_probs=68.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 78 ~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.+ |.+|+..|||..+.|+.|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l 72 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTI 72 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEE
Confidence 48999999999999999999999999999999999989999999999999999 999999999999999875
No 77
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=7.7e-20 Score=125.52 Aligned_cols=76 Identities=32% Similarity=0.594 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
.....+|||+|||+.+++++|+++|++||.|..+.++.|+.+|+++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 142 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 142 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 4567899999999999999999999999999999999998899999999999999999999999999999998754
No 78
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.8e-20 Score=118.84 Aligned_cols=77 Identities=26% Similarity=0.573 Sum_probs=70.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 71 LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 71 ~~~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
.......++|||+|||..+++++|+++|++||.|.++.++.++ ++++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3446677899999999999999999999999999999999986 4589999999999999999999999999998765
No 79
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=115.74 Aligned_cols=76 Identities=14% Similarity=0.292 Sum_probs=68.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 72 ~~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....+.++|||+|||+.+++++|+++|++||.|..+.++.++. .++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeE
Confidence 3456778999999999999999999999999999999999863 368999999999999999999999999988754
No 80
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.81 E-value=5.5e-20 Score=118.48 Aligned_cols=72 Identities=15% Similarity=0.295 Sum_probs=66.7
Q ss_pred CCCCCeEEEcCCCCCC------CHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031988 74 CQPKTRLFVSGLSFRT------SEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASP 147 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~------~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~ 147 (149)
....++|||+|||+.+ ++++|+++|++||.|.++.++ +.+|+++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 4456899999999999 789999999999999999888 35899999999999999999999999999999997
No 81
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2e-19 Score=115.20 Aligned_cols=75 Identities=24% Similarity=0.448 Sum_probs=67.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCC
Q 031988 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPG 148 (149)
Q Consensus 72 ~~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~ 148 (149)
....+.++|||+|||+.+++++|+++|.+||.|..+.++.++.+|+++|||||+|.+.++|++|+.. +..+.|+.
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~ 84 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRW 84 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeE
Confidence 3456778999999999999999999999999999999999998999999999999999999999984 56666653
No 82
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.81 E-value=1.2e-19 Score=130.36 Aligned_cols=76 Identities=21% Similarity=0.402 Sum_probs=70.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|||+++++++|+++|++||.|.+|.|++|+.+|+++|||||+|.+.++|.+|++.+|+..+.|+.|
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i 87 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPV 87 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccc
Confidence 4566899999999999999999999999999999999999999999999999999999999999999999988753
No 83
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=116.81 Aligned_cols=70 Identities=14% Similarity=0.227 Sum_probs=63.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCC--CccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHG--KSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g--~~~~~~~l 149 (149)
+.+.++|||+|||+.+++++|+++|++||.|.++.|+++ ||||||+|.+.++|+.|++.|++ ..+.|+.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l 84 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 84 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 567789999999999999999999999999999999886 49999999999999999998864 67888754
No 84
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=1.5e-19 Score=125.16 Aligned_cols=77 Identities=21% Similarity=0.430 Sum_probs=71.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...+.++|||+|||+.+++++|+.+|.+||.|..|.|+.++.+|+++|||||+|.+.++|..||..|||..|.|+.|
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 35567899999999999999999999999999999999998899999999999999999999999999999998765
No 85
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.3e-19 Score=114.77 Aligned_cols=74 Identities=18% Similarity=0.358 Sum_probs=67.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...+.++|||+|||+++++++|+++|++||.|..+.+.. +++++|||||+|.+.++|++|++.|||..|.|+.|
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 91 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRL 91 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 356678999999999999999999999999999999855 46689999999999999999999999999998764
No 86
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.80 E-value=9.1e-20 Score=132.64 Aligned_cols=74 Identities=16% Similarity=0.452 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 76 PKTRLFVSGLSFRTSEDSLRNAFQGFG--QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 76 ~~~~l~v~nL~~~~~~~~l~~~F~~~G--~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..++|||+||++++++++|+++|++|| .|.+|.|+.|+.+|+++|||||+|.+.++|++||+.|||+.|.|+.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEe
Confidence 567999999999999999999999999 99999999999999999999999999999999999999999999876
No 87
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.80 E-value=1.1e-19 Score=120.15 Aligned_cols=73 Identities=18% Similarity=0.486 Sum_probs=69.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 76 ~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|+ .|||..|+|+.|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 107 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTI 107 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEE
Confidence 4579999999999999999999999999999999999889999999999999999999999 799999998765
No 88
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=113.12 Aligned_cols=73 Identities=15% Similarity=0.315 Sum_probs=68.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....++|||+|||+++++++|+++|++| .|..+.++.+ .+|+++|||||+|.+.++|.+|+. |||..++|+.|
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i 79 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYI 79 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEE
Confidence 5667899999999999999999999999 9999999999 699999999999999999999999 99999998753
No 89
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.5e-19 Score=116.90 Aligned_cols=76 Identities=16% Similarity=0.270 Sum_probs=70.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCC-eEEEEEe-ecCCCCCCceEEEEEeCCHHHHHHHHHHhC--CCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQ-LVEVNLV-MDKIANRPRGFAFLRYATEEESRRAIEGMH--GKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~-i~~~~i~-~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~--g~~~~~~~l 149 (149)
..+.++|||+|||+.+++++|+++|.+||. |.++.++ .++.+|+++|||||+|.+.++|..|++.|| +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 346789999999999999999999999998 9999998 888889999999999999999999999996 589998765
No 90
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.8e-20 Score=120.02 Aligned_cols=74 Identities=15% Similarity=0.264 Sum_probs=69.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCe-EEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQL-VEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i-~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|||+++++++|+++|++||.| ..|.|+.|+ +|+++|||||+|.+.++|++||+. ||..|.|+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i 86 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREA 86 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEE
Confidence 5567899999999999999999999999999 899999998 999999999999999999999986 9999998754
No 91
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=2.8e-19 Score=119.04 Aligned_cols=73 Identities=15% Similarity=0.365 Sum_probs=66.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLR----NAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~----~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. +|+++|||||+|.+.++|..|+..|||..+.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4567899999999999999876 6999999999987743 78999999999999999999999999999999875
No 92
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.8e-20 Score=119.85 Aligned_cols=75 Identities=31% Similarity=0.564 Sum_probs=69.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....++|||+|||+.+++++|+++|.+||.|..+.++.++.+|+++|||||+|.+.++|++||.. +|..|.|+.|
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l 98 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVV 98 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEE
Confidence 44558999999999999999999999999999999999998999999999999999999999997 9999988653
No 93
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.80 E-value=9.3e-20 Score=117.78 Aligned_cols=74 Identities=15% Similarity=0.252 Sum_probs=69.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCC---eEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQ---LVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~---i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
.....+|||+|||+++++++|+++|+.||. |..+.++.++. |+++|||||+|.+.++|++||. +||..++|+.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 567789999999999999999999999988 89999999986 9999999999999999999999 99999999865
No 94
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.80 E-value=7.5e-20 Score=123.15 Aligned_cols=74 Identities=16% Similarity=0.245 Sum_probs=69.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCC---eEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQ---LVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~---i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....++|||+|||+++++++|+++|++||. |.+|.|+.|+. |+++|||||+|.+.++|++||+ +||..|+|+.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 456789999999999999999999999999 89999999985 9999999999999999999999 99999998854
No 95
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=6.1e-20 Score=123.44 Aligned_cols=77 Identities=31% Similarity=0.586 Sum_probs=72.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|+..|||..|.|+.|
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 119 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 119 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 35567899999999999999999999999999999999998899999999999999999999999999999999875
No 96
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.80 E-value=4.7e-20 Score=111.54 Aligned_cols=70 Identities=33% Similarity=0.614 Sum_probs=66.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 79 ~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
+|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|++ +++..+.|+.|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l 70 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKC 70 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEE
Confidence 58999999999999999999999999999999999899999999999999999999998 59999999865
No 97
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-19 Score=114.66 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=67.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLR----NAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~----~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....++|||+|||+.+++++|+ ++|++||.|.++.++.|+.+ +|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3456799999999999999999 99999999999999998755 7999999999999999999999999998754
No 98
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.7e-19 Score=117.21 Aligned_cols=76 Identities=25% Similarity=0.356 Sum_probs=68.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH---HHHhcCCCeEEEEEeecCCCC---CCceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLR---NAFQGFGQLVEVNLVMDKIAN---RPRGFAFLRYATEEESRRAIEGMHGKSRASP 147 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~---~~F~~~G~i~~~~i~~~~~~g---~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~ 147 (149)
....++|||+|||+.+++++|+ ++|++||.|.++.++.+..++ +++|||||+|.+.++|++|++.|||..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 4456799999999999999999 999999999999999988654 5669999999999999999999999999987
Q ss_pred CC
Q 031988 148 GL 149 (149)
Q Consensus 148 ~l 149 (149)
.|
T Consensus 92 ~l 93 (111)
T 2cpi_A 92 TL 93 (111)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 99
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1e-19 Score=118.17 Aligned_cols=72 Identities=18% Similarity=0.351 Sum_probs=66.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 75 ~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....+|||+|||+++++++|+++|++| .|.+|.|+.|+ +|+++|||||+|.+.++|++|| .+||..|+|+.|
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i 85 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYV 85 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEE
Confidence 345699999999999999999999999 89999999998 5999999999999999999999 599999998753
No 100
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=9.9e-20 Score=119.71 Aligned_cols=74 Identities=16% Similarity=0.251 Sum_probs=68.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCC---eEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQ---LVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~---i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....++|||+|||+++++++|+++|+.||. |..|.++.++. |+++|||||+|.+.++|++||+ +||..|+|+.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 456789999999999999999999999999 89999999985 9999999999999999999999 99999998753
No 101
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.79 E-value=9.4e-19 Score=122.68 Aligned_cols=76 Identities=21% Similarity=0.401 Sum_probs=71.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
.....++|||+|||+.+++++|+++|++||.|..|.|+.++ +|+++|||||+|.+.++|++|++.|||..|.|+.|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l 159 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM 159 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEE
Confidence 34567899999999999999999999999999999999998 99999999999999999999999999999999865
No 102
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=2.8e-20 Score=118.82 Aligned_cols=75 Identities=19% Similarity=0.279 Sum_probs=68.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
.....++|||+|||+++++++|+++|++||.|.. .++.+..+|+++|||||+|.+.++|++|++ |||..+.|+.|
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l 87 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEI 87 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEE
Confidence 3456789999999999999999999999999888 677777789999999999999999999998 99999999875
No 103
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.79 E-value=9.9e-19 Score=114.04 Aligned_cols=73 Identities=15% Similarity=0.372 Sum_probs=67.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
+.+.++|||+|||+.+++++|+++|++||.|.++.++.+ +.++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 77 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYL 77 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 456789999999999999999999999999999999874 5568999999999999999999999999999865
No 104
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.79 E-value=3e-19 Score=113.94 Aligned_cols=70 Identities=17% Similarity=0.179 Sum_probs=63.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCc--cCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKS--RASPG 148 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~--~~~~~ 148 (149)
...++++|||+|||+.+++++|+++|++||.|.++.++++ ||||||+|.+.++|.+|++.|||.. +.|+.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHP 88 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence 3567889999999999999999999999999999998864 4999999999999999999999886 66764
No 105
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=112.31 Aligned_cols=70 Identities=16% Similarity=0.184 Sum_probs=62.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCC--ccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGK--SRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~--~~~~~~l 149 (149)
..+.++|||+|||+.+++++|+++|++||.|.++.++++ ||||||+|.+.++|.+|++.|++. .+.|+.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 566789999999999999999999999999999988775 499999999999999999988765 4788764
No 106
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=111.05 Aligned_cols=71 Identities=18% Similarity=0.207 Sum_probs=63.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHh--CCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM--HGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l--~g~~~~~~~l 149 (149)
...+.++|||+|||+.+++++|+++|++||.|.++.++.+ +|||||+|.+.++|..|++.| ++..+.|+.|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 3566789999999999999999999999999999988875 499999999999999999977 4667887754
No 107
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.1e-19 Score=117.25 Aligned_cols=76 Identities=24% Similarity=0.344 Sum_probs=65.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|||+.+++++|+++|.+||.|..+.+..+..+|+++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 4567899999999999999999999999998543322222379999999999999999999999999999999865
No 108
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=107.78 Aligned_cols=71 Identities=28% Similarity=0.406 Sum_probs=65.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHh-CCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM-HGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l-~g~~~~~~~l 149 (149)
.....++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|++.| ||..+.|+.|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 3566789999999999999999999999999999999875 499999999999999999999 9999998764
No 109
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-18 Score=110.37 Aligned_cols=71 Identities=28% Similarity=0.448 Sum_probs=65.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...+.++|||+|||+.+++++|+++|++||.|..+.+.++ +|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l 81 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQL 81 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceE
Confidence 3566789999999999999999999999999999999865 4999999999999999999999999999865
No 110
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=3.9e-19 Score=110.26 Aligned_cols=69 Identities=22% Similarity=0.327 Sum_probs=63.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 75 ~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.-|||+||++.+++++|+++|.+||+|.++.+.. ++|||||+|.+.++|..|++.|||..++|+.|
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I 73 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTI 73 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 4466899999999999999999999999999999876 46999999999999999999999999999764
No 111
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.8e-19 Score=114.67 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=63.0
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCC--ccCCCCC
Q 031988 74 CQPKTRLFVSGLSF-RTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGK--SRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~-~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~--~~~~~~l 149 (149)
..+.++|||+|||+ .+++++|+++|++||.|.++.|++++ |||||+|.+.++|.+|++.||+. .|.|+.|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 45678999999999 99999999999999999999998765 89999999999999999999865 4777654
No 112
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.78 E-value=1.3e-18 Score=119.20 Aligned_cols=74 Identities=26% Similarity=0.506 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 76 ~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
+.++|||+|||+.+++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l 74 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 74 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceE
Confidence 35799999999999999999999999999999999999899999999999999999999999999999988754
No 113
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.78 E-value=1.4e-19 Score=115.71 Aligned_cols=72 Identities=19% Similarity=0.460 Sum_probs=65.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPG 148 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~ 148 (149)
....++|||+|||+.+++++|+++|++||.|..+.++.++ +|+++|||||+|.+.++|++|+. +|..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~ 77 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKK 77 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEE
Confidence 4456799999999999999999999999999999999998 99999999999999999999998 666666553
No 114
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=114.27 Aligned_cols=70 Identities=14% Similarity=0.227 Sum_probs=63.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCC--CccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHG--KSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g--~~~~~~~l 149 (149)
..+.++|||+|||+.+++++|+++|++||.|.++.++.+ +|||||+|.+.++|.+|++.|++ ..+.|+.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 456789999999999999999999999999999999886 49999999999999999998874 67888765
No 115
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=113.47 Aligned_cols=70 Identities=13% Similarity=0.144 Sum_probs=62.6
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCC--CccCCCCC
Q 031988 74 CQPKTRLFVSGLSFR-TSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHG--KSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~-~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g--~~~~~~~l 149 (149)
..+.++|||+|||++ +++++|+++|++||.|.++.++++ +|||||+|.+.++|+.|++.||+ ..+.|+.|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 566889999999998 999999999999999999998754 59999999999999999998864 55888765
No 116
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3e-19 Score=118.30 Aligned_cols=73 Identities=21% Similarity=0.303 Sum_probs=66.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCe----EEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQL----VEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 75 ~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i----~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....+|||+|||+++++++|+++|++||.| ..|.|+.|. +|+++|||||+|.+.++|++||+. |+..++++.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 456799999999999999999999999986 689999985 999999999999999999999985 9999998753
No 117
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=109.09 Aligned_cols=71 Identities=21% Similarity=0.394 Sum_probs=64.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....++|||+|||+.+++++|+++|++||.|. +.++. ++++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTL 86 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 45578999999999999999999999999996 66654 4678999999999999999999999999999875
No 118
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=8.2e-19 Score=111.93 Aligned_cols=73 Identities=18% Similarity=0.414 Sum_probs=65.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...+.++|||+|||+.+++++|+++|++||.| .++.+ .+|+++|||||+|.+.++|++|++.|||..|.|+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 83 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 83 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEE
Confidence 35678899999999999999999999999987 56666 589999999999999999999999999999988754
No 119
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.7e-18 Score=107.37 Aligned_cols=68 Identities=18% Similarity=0.480 Sum_probs=63.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|||+++++++|+++|++||.|..+.++ +|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 72 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNI 72 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEE
Confidence 5667899999999999999999999999999999887 4899999999999999999999999999865
No 120
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.77 E-value=1.1e-18 Score=115.97 Aligned_cols=73 Identities=21% Similarity=0.387 Sum_probs=66.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeE--EEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLV--EVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~--~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
.....+|||+|||+++++++|+++|++| .|. +|.|+.|+. |+++|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I 113 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYI 113 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEE
Confidence 4566799999999999999999999999 676 899999985 9999999999999999999998 57899999865
No 121
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.77 E-value=1.2e-18 Score=112.87 Aligned_cols=71 Identities=37% Similarity=0.596 Sum_probs=64.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 71 LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 71 ~~~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
.....+.++|||+|||+.+++++|+++|++||.|..+.++ +|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 95 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPL 95 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 3446778899999999999999999999999999999887 4999999999999999999999999998764
No 122
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=5.1e-18 Score=107.53 Aligned_cols=70 Identities=30% Similarity=0.516 Sum_probs=64.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccC--CCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRA--SPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~--~~~l 149 (149)
..+.++|||+|||+.+++++|+++|++||.|.++.+..+ +|||||+|.+.++|++|++.|||..+. |+.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l 85 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRL 85 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEE
Confidence 456689999999999999999999999999999988765 589999999999999999999999999 7754
No 123
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=110.32 Aligned_cols=74 Identities=31% Similarity=0.564 Sum_probs=67.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...+.++|||+|||+++++++|+++|+.|+ .+.++.++.+++++|||||+|.+.++|++||+.|||..|.|+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 84 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 356778999999999999999999999874 67788888899999999999999999999999999999998764
No 124
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.7e-19 Score=118.12 Aligned_cols=72 Identities=15% Similarity=0.224 Sum_probs=65.1
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCC----HHH----HHHHHH--HhCCCc
Q 031988 78 TRLFVSGL----SFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYAT----EEE----SRRAIE--GMHGKS 143 (149)
Q Consensus 78 ~~l~v~nL----~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~----~~~----a~~Al~--~l~g~~ 143 (149)
.+|||+|| |+.+++.+|+.+|+.||+|.++.++.|+.||+++|||||+|.+ +++ |.+|+. .+||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999996 333 888988 789999
Q ss_pred cCCCCC
Q 031988 144 RASPGL 149 (149)
Q Consensus 144 ~~~~~l 149 (149)
|+|+.|
T Consensus 83 I~Gr~i 88 (136)
T 2j8a_A 83 IMGFKF 88 (136)
T ss_dssp ETTEEE
T ss_pred ecCcEE
Confidence 999754
No 125
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.77 E-value=3.6e-19 Score=112.69 Aligned_cols=73 Identities=21% Similarity=0.440 Sum_probs=66.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLR----NAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~----~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|||+.+++++|+ ++|++||.|..+.+.. +|+++|||||+|.+.++|..|++.|||..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 5677899999999999999999 9999999999998863 67888999999999999999999999999998754
No 126
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=2.9e-20 Score=121.71 Aligned_cols=76 Identities=21% Similarity=0.370 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEE--------EEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVE--------VNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRA 145 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~--------~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~ 145 (149)
..+.++|||+|||+.+++++|+++|++||.|.. +.++.++.+|+++|||||+|.+.++|++|+..|||..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456789999999999999999999999999998 899999889999999999999999999999999999999
Q ss_pred CCCC
Q 031988 146 SPGL 149 (149)
Q Consensus 146 ~~~l 149 (149)
|+.|
T Consensus 84 g~~l 87 (116)
T 2lcw_A 84 GNPI 87 (116)
Confidence 8865
No 127
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.77 E-value=3.3e-19 Score=120.39 Aligned_cols=73 Identities=21% Similarity=0.295 Sum_probs=66.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....++|||+|||+++++++|+++|++|| |.+|.|+.|+. |+++|||||+|.+.++|++|| .+|+..|+++.|
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i 115 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYI 115 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEE
Confidence 45667999999999999999999999999 67999999984 999999999999999999999 799999999875
No 128
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.76 E-value=1.5e-18 Score=119.23 Aligned_cols=74 Identities=24% Similarity=0.410 Sum_probs=70.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 76 ~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
+.++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|..|++.|+|..+.|+.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l 75 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRL 75 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEE
Confidence 46799999999999999999999999999999999998899999999999999999999999999999988754
No 129
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.76 E-value=2.8e-18 Score=108.97 Aligned_cols=71 Identities=24% Similarity=0.480 Sum_probs=63.2
Q ss_pred CCCCCCCCeEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 71 LSTCQPKTRLFVSGLSF-RTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 71 ~~~~~~~~~l~v~nL~~-~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
.....+.++|||+|||+ .+++++|+++|++||.|.++.+. +|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34466788999999998 99999999999999999999883 5999999999999999999999999988754
No 130
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.5e-18 Score=111.17 Aligned_cols=66 Identities=20% Similarity=0.319 Sum_probs=62.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRAS 146 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~ 146 (149)
....++|||+|||+++++++|+++|.+||.|..+.|+.+ |||||+|.+.++|++||+.|||..|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 456789999999999999999999999999999999886 899999999999999999999999988
No 131
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.76 E-value=5.7e-18 Score=115.93 Aligned_cols=77 Identities=23% Similarity=0.545 Sum_probs=72.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...+..+|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+..|||..++|+.|
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 159 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 159 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Confidence 45667899999999999999999999999999999999998899999999999999999999999999999998765
No 132
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.76 E-value=4.5e-19 Score=115.41 Aligned_cols=72 Identities=14% Similarity=0.089 Sum_probs=64.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFG-QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G-~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
+....+|||+|||+++++++|+++|++|| .|..+.+.. ++++|||||+|.+.++|++||+.|||..+.|+.|
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i 97 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVI 97 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 45567999999999999999999999999 899998753 3578999999999999999999999999998754
No 133
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=113.64 Aligned_cols=70 Identities=30% Similarity=0.527 Sum_probs=63.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCC---CCCceEEEEEeCCHHHHHHHHHHh---CCCcc
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIA---NRPRGFAFLRYATEEESRRAIEGM---HGKSR 144 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~---g~~~g~~fV~f~~~~~a~~Al~~l---~g~~~ 144 (149)
....++|||+|||+++++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|++||+.| +|..+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 45568999999999999999999999999999 888888777 799999999999999999999988 66643
No 134
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.75 E-value=5.2e-18 Score=115.58 Aligned_cols=73 Identities=22% Similarity=0.494 Sum_probs=67.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 72 ~~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
......++|||+|||+.+++++|+++|++||.|.++.++.+ ++|||||+|.+.++|..|+..|||..+.|+.|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 140 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRV 140 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 34567789999999999999999999999999999999886 46999999999999999999999999999875
No 135
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=3.5e-18 Score=108.99 Aligned_cols=70 Identities=20% Similarity=0.343 Sum_probs=63.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....++|||+|||.++++++|+++|++||.|.++.+.. ++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 93 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNL 93 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 34567999999999999999999999999999998873 45999999999999999999999999998765
No 136
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-18 Score=110.53 Aligned_cols=67 Identities=25% Similarity=0.542 Sum_probs=63.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 78 ~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
++|||+|||+++++++|+++|++||.|.++.++.+ ++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 67 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRV 67 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEE
Confidence 48999999999999999999999999999999887 67999999999999999999999999999875
No 137
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-18 Score=112.61 Aligned_cols=69 Identities=22% Similarity=0.223 Sum_probs=63.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 75 ~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...++|||+|||+.+++++|+++|++||.|..+.++. ++|||||+|.+.++|+.|++.|||..+.|+.|
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 76 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPL 76 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Confidence 4467999999999999999999999999999998875 45999999999999999999999999999865
No 138
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.75 E-value=2.7e-18 Score=120.86 Aligned_cols=76 Identities=33% Similarity=0.575 Sum_probs=70.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
.....++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|.+|+.. ++..+.|+.|
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l 84 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVV 84 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEe
Confidence 356778999999999999999999999999999999999998999999999999999999999985 8888887654
No 139
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.75 E-value=3.3e-18 Score=134.85 Aligned_cols=76 Identities=28% Similarity=0.561 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|||+.+++++|+.+|.+||.|..|.|+.++.+|+++|||||+|.+.++|.+||..|||..|.|+.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i 174 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRV 174 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEE
Confidence 4566899999999999999999999999999999999998899999999999999999999999999999998764
No 140
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.75 E-value=5.8e-18 Score=116.86 Aligned_cols=76 Identities=28% Similarity=0.505 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|++.|||..++|+.|
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 166 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKL 166 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEE
Confidence 3446899999999999999999999999999999999998899999999999999999999999999999999765
No 141
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.9e-18 Score=110.30 Aligned_cols=70 Identities=21% Similarity=0.542 Sum_probs=65.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 91 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVV 91 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 456789999999999999999999999999999999887 4999999999999999999999999998764
No 142
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.75 E-value=3e-18 Score=112.08 Aligned_cols=67 Identities=19% Similarity=0.315 Sum_probs=61.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCC
Q 031988 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPG 148 (149)
Q Consensus 75 ~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~ 148 (149)
....+|||+|||+++++++|+++|++||.|..+.|+.+ |||||+|.+.++|++||+.|||..|.|+.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 45679999999999999999999999999999999776 99999999999999999999999999975
No 143
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.75 E-value=9.4e-18 Score=119.72 Aligned_cols=75 Identities=21% Similarity=0.474 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 75 ~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...++|||+|||..+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|++.|||..|+|+.|
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i 197 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 197 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEE
Confidence 455799999999999999999999999999999999998899999999999999999999999999999999865
No 144
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=6.7e-18 Score=106.88 Aligned_cols=68 Identities=26% Similarity=0.549 Sum_probs=62.0
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSF-RTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~-~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|||+ .+++++|+++|++||.|..+.+. +|||||+|.+.++|+.|+..|||..+.|+.|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 75 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKL 75 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTB
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 56778999999998 99999999999999999999884 5999999999999999999999999998865
No 145
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.74 E-value=9e-18 Score=119.80 Aligned_cols=75 Identities=25% Similarity=0.550 Sum_probs=68.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 75 ~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l 100 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNI 100 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeE
Confidence 345799999999999999999999999999999999998899999999999999999999999999999999865
No 146
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=8.8e-18 Score=106.11 Aligned_cols=72 Identities=14% Similarity=0.225 Sum_probs=64.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEE-EEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEV-NLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~-~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....++|||+|||+.+++++|+++|.+||.|..+ .++.++.+|+ |||+|.+.++|..|+..|||..+.|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l 84 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTL 84 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 4456899999999999999999999999999999 5888765543 9999999999999999999999999875
No 147
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=105.21 Aligned_cols=70 Identities=24% Similarity=0.321 Sum_probs=62.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....++|||+|||+++++++|+++|++||.|.+| +.++.+|+ ||||+|.+.++|++|+. |||..+.|+.|
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l 74 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRL 74 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEEC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEE
Confidence 3455799999999999999999999999999987 66666666 99999999999999999 99999998754
No 148
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.7e-17 Score=105.48 Aligned_cols=70 Identities=24% Similarity=0.496 Sum_probs=62.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcC--CCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGF--GQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 72 ~~~~~~~~l~v~nL~~~~~~~~l~~~F~~~--G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....+.++|||+|||+.+++++|+++|++| |.|..+.+. +|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 345667899999999999999999999999 999998764 4899999999999999999999999988753
No 149
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.5e-18 Score=112.10 Aligned_cols=65 Identities=28% Similarity=0.409 Sum_probs=59.2
Q ss_pred CCCCCeEEE--cCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCcc
Q 031988 74 CQPKTRLFV--SGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSR 144 (149)
Q Consensus 74 ~~~~~~l~v--~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~ 144 (149)
..+.++||| +||++.+++++|+++|++||.|.++.++.+ +|||||+|.+.++|++|++.|||+.+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 456789999 779999999999999999999999987653 59999999999999999999999987
No 150
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.74 E-value=2.1e-17 Score=107.00 Aligned_cols=68 Identities=24% Similarity=0.535 Sum_probs=62.5
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFR-TSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~-~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....++|||+|||+. +++++|+++|++||.|..+.+ ++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 92 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTL 92 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 445689999999999 999999999999999999988 35999999999999999999999999998764
No 151
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.73 E-value=2.4e-17 Score=112.86 Aligned_cols=75 Identities=24% Similarity=0.570 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPG 148 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~ 148 (149)
.....+|||+|||+.+++++|+++|++||.|..+.++.+..+|+++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 159 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 159 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCc
Confidence 345679999999999999999999999999999999999889999999999999999999999999999999975
No 152
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.73 E-value=4.5e-17 Score=111.85 Aligned_cols=76 Identities=33% Similarity=0.602 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCC--CCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRAS--PGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~--~~l 149 (149)
....++|||+|||..+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|++.|||..+.| +.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l 163 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPL 163 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCC
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEE
Confidence 4567899999999999999999999999999999999998899999999999999999999999999999977 543
No 153
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-18 Score=110.22 Aligned_cols=71 Identities=20% Similarity=0.438 Sum_probs=64.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|||+.+++++|+++|++||.|..+ ..+|+++|||||+|.+.++|..|+..|||..+.|+.|
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 83 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 83 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 5567899999999999999999999999988765 2478999999999999999999999999999998753
No 154
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.73 E-value=1.7e-17 Score=116.92 Aligned_cols=76 Identities=28% Similarity=0.512 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|++.|||..++|+.|
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 186 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKL 186 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 4667899999999999999999999999999999999998899999999999999999999999999999998764
No 155
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.73 E-value=2.1e-17 Score=114.11 Aligned_cols=70 Identities=24% Similarity=0.468 Sum_probs=66.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCC--CCceEEEEEeCCHHHHHHHHHHhCCCccC
Q 031988 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIAN--RPRGFAFLRYATEEESRRAIEGMHGKSRA 145 (149)
Q Consensus 76 ~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g--~~~g~~fV~f~~~~~a~~Al~~l~g~~~~ 145 (149)
+.++|||+|||+++++++|+++|++||.|.++.++.++.+| +++|||||+|.+.++|++|++.|||..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 73 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVL 73 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEc
Confidence 45799999999999999999999999999999999999776 89999999999999999999999998775
No 156
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=104.79 Aligned_cols=68 Identities=24% Similarity=0.481 Sum_probs=62.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|||+.+++++|+++|++||.|..+.+++ +||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 74 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRM 74 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 56778999999999999999999999999999998874 599999999999999999999999988754
No 157
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.73 E-value=8.1e-18 Score=115.16 Aligned_cols=71 Identities=25% Similarity=0.465 Sum_probs=66.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 78 ~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
++|||+|||+++++++|+++|++||.|.++.++.++ +|+++|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 71 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIV 71 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCee
Confidence 589999999999999999999999999999999997 68899999999999999999999999999988754
No 158
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.73 E-value=9.2e-19 Score=118.43 Aligned_cols=75 Identities=19% Similarity=0.360 Sum_probs=65.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEE------EEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEV------NLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASP 147 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~------~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~ 147 (149)
..+.++|||+|||+.+++++|+.+|++||.|..+ .+.. ..+|+++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 4567899999999999999999999999998764 1111 23799999999999999999999999999999987
Q ss_pred CC
Q 031988 148 GL 149 (149)
Q Consensus 148 ~l 149 (149)
.|
T Consensus 121 ~l 122 (143)
T 3egn_A 121 PM 122 (143)
T ss_dssp EC
T ss_pred EE
Confidence 65
No 159
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=104.18 Aligned_cols=68 Identities=24% Similarity=0.469 Sum_probs=63.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|||+.+++++|+++|++||.|..+.+++ +||||+|.+.++|++|++.|||..+.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 73 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRI 73 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 56678999999999999999999999999999999874 599999999999999999999999998764
No 160
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.72 E-value=1.1e-17 Score=107.09 Aligned_cols=68 Identities=28% Similarity=0.502 Sum_probs=62.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|||+.+++++|+++|++||.|..+.+++ |||||+|.+.++|++|++.|||..|.|+.|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 75 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENI 75 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEE
Confidence 45678999999999999999999999999999998863 799999999999999999999999988754
No 161
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.72 E-value=7.6e-18 Score=104.98 Aligned_cols=68 Identities=18% Similarity=0.259 Sum_probs=62.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 75 ~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...++|||+|||+.+++++|+++|++| .|.++.+. +++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 70 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDL 70 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence 456799999999999999999999999 99999884 567999999999999999999999999998753
No 162
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.71 E-value=1.4e-17 Score=103.26 Aligned_cols=69 Identities=25% Similarity=0.514 Sum_probs=63.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcC----C-------CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGF----G-------QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGK 142 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~----G-------~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~ 142 (149)
..+.++|||+|||+.+++++|+++|++| | .|.++.+..+ +|||||+|.+.++|.+|+ .|||.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 3456799999999999999999999999 8 8999988765 499999999999999999 99999
Q ss_pred ccCCCCC
Q 031988 143 SRASPGL 149 (149)
Q Consensus 143 ~~~~~~l 149 (149)
.+.|+.|
T Consensus 76 ~~~g~~l 82 (87)
T 2hzc_A 76 IFQGQSL 82 (87)
T ss_dssp EETTEEC
T ss_pred EECCeEE
Confidence 9999765
No 163
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.71 E-value=1.7e-17 Score=114.00 Aligned_cols=70 Identities=24% Similarity=0.566 Sum_probs=63.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031988 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASP 147 (149)
Q Consensus 76 ~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~ 147 (149)
+.++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|.+|+.. +..+.|+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~ 71 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGK 71 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCe
Confidence 457999999999999999999999999999999999988999999999999999999999985 3444443
No 164
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.7e-18 Score=105.59 Aligned_cols=69 Identities=26% Similarity=0.383 Sum_probs=60.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCC-eEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCC-CccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQ-LVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHG-KSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~-i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g-~~~~~~~l 149 (149)
....++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||| ..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 75 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIM 75 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEE
Confidence 456789999999999999999999999999 6665552 359999999999999999999999 99988754
No 165
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.71 E-value=6e-17 Score=111.78 Aligned_cols=72 Identities=26% Similarity=0.488 Sum_probs=67.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRAS 146 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~ 146 (149)
....++|||+|||+.+++++|+++|++||.|.++.++.++ +|+++|||||+|.+.++|.+|++.|||..+.+
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 163 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTME 163 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCT
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 3466799999999999999999999999999999999997 79999999999999999999999999988764
No 166
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.71 E-value=2.7e-17 Score=117.94 Aligned_cols=72 Identities=26% Similarity=0.544 Sum_probs=67.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 76 ~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...+|||+|||+.+++++|+++|++||.|.++.|+.|. +.++|||||+|.+.++|.+|++.|||..|+|+.|
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i 173 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 173 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEE
Confidence 34689999999999999999999999999999999985 5579999999999999999999999999999865
No 167
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.71 E-value=4.1e-17 Score=114.76 Aligned_cols=75 Identities=20% Similarity=0.439 Sum_probs=68.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+.. +|..+.|+.|
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i 175 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNC 175 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEEC
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEE
Confidence 34558999999999999999999999999999999999988999999999999999999999985 8999988754
No 168
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.70 E-value=1.4e-17 Score=114.35 Aligned_cols=73 Identities=19% Similarity=0.435 Sum_probs=69.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 76 ~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...+|||+|||+.+++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|.+|++ ++|..++|+.|
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i 158 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKI 158 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEE
Confidence 45699999999999999999999999999999999998899999999999999999999998 89999999864
No 169
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.70 E-value=4.6e-17 Score=116.48 Aligned_cols=70 Identities=23% Similarity=0.289 Sum_probs=64.4
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 75 QPKTRLFVSGLS-FRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 75 ~~~~~l~v~nL~-~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
.++++|||+||| +.+++++|+++|++||.|.+|.++.++ +|||||+|.+.++|+.||+.|||..+.|+.|
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 72 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKM 72 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceE
Confidence 356799999999 799999999999999999999998753 6999999999999999999999999998765
No 170
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=101.31 Aligned_cols=68 Identities=28% Similarity=0.506 Sum_probs=61.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|| .+++++|+++|++||.|..+.+. +++|||||+|.+.++|++|+..|||..+.|+.|
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 79 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQL 79 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 556789999996 89999999999999999999884 456999999999999999999999999988754
No 171
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.70 E-value=1.1e-16 Score=103.03 Aligned_cols=76 Identities=12% Similarity=0.146 Sum_probs=66.4
Q ss_pred CCCCCeEEEcCCCC-----CCCHHHHHHHHhcCCCeEEEEEeecCCC-CCCceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031988 74 CQPKTRLFVSGLSF-----RTSEDSLRNAFQGFGQLVEVNLVMDKIA-NRPRGFAFLRYATEEESRRAIEGMHGKSRASP 147 (149)
Q Consensus 74 ~~~~~~l~v~nL~~-----~~~~~~l~~~F~~~G~i~~~~i~~~~~~-g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~ 147 (149)
..++++|+|.||.. +-.+++|++.|++||.|.++.|+.++.+ ++++|||||+|.+.++|.+|++.|||..+.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35677999999963 2367999999999999999999998654 68999999999999999999999999999998
Q ss_pred CC
Q 031988 148 GL 149 (149)
Q Consensus 148 ~l 149 (149)
.|
T Consensus 85 ~i 86 (105)
T 2pe8_A 85 VV 86 (105)
T ss_dssp EC
T ss_pred EE
Confidence 65
No 172
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=3.7e-16 Score=103.36 Aligned_cols=63 Identities=13% Similarity=0.224 Sum_probs=57.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceE-EEEEeCCHHHHHHHHHHhCCCccCCC
Q 031988 79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGF-AFLRYATEEESRRAIEGMHGKSRASP 147 (149)
Q Consensus 79 ~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~-~fV~f~~~~~a~~Al~~l~g~~~~~~ 147 (149)
.|||+||++.+++++|+++|++||.|.+|.+... .|| |||+|.+.++|..|++.|||..|.|+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~ 90 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAG 90 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTT
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCC
Confidence 5789999999999999999999999999988652 286 99999999999999999999999873
No 173
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=99.71 Aligned_cols=65 Identities=20% Similarity=0.310 Sum_probs=57.4
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHHHhcC-CCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCC
Q 031988 75 QPKTR-LFVSGLSFRTSEDS----LRNAFQGF-GQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPG 148 (149)
Q Consensus 75 ~~~~~-l~v~nL~~~~~~~~----l~~~F~~~-G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~ 148 (149)
++..+ |||+|||+.+++++ |+++|++| |.|.+| +| |+|||.|.+.++|++|++.|||..+.|+.
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34445 99999999999987 55899999 599998 34 99999999999999999999999999987
Q ss_pred C
Q 031988 149 L 149 (149)
Q Consensus 149 l 149 (149)
+
T Consensus 76 i 76 (96)
T 2diu_A 76 I 76 (96)
T ss_dssp C
T ss_pred E
Confidence 5
No 174
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.69 E-value=1e-16 Score=110.56 Aligned_cols=67 Identities=22% Similarity=0.367 Sum_probs=60.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 031988 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRAS 146 (149)
Q Consensus 76 ~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~ 146 (149)
...+|||+||++.+++++|+++|++||.|++|.+..+ +++|||||+|.+.++|+.|++.|||..|.|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g 111 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYN 111 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 3457999999999999999999999999999988653 256999999999999999999999999965
No 175
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.68 E-value=1e-16 Score=113.71 Aligned_cols=72 Identities=13% Similarity=0.298 Sum_probs=65.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 76 ~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..++|||+|||+.+++++|+++|++||.|..|.++.+. +|+++|||||+|.+.++|+.|+..++ ..+.|+.|
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l 179 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDL 179 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEEC
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEE
Confidence 35799999999999999999999999999999999987 69999999999999999999998554 58888754
No 176
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.68 E-value=9.7e-17 Score=100.32 Aligned_cols=63 Identities=21% Similarity=0.420 Sum_probs=53.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRA 145 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~ 145 (149)
..+..+|||+|||+++++++|+++|++||.|.++.++.+ ++|||||+|.+.++|++ ++|..+.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~ 70 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLI 70 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcc
Confidence 567789999999999999999999999999999999874 67999999999999883 5666543
No 177
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.68 E-value=1.9e-16 Score=117.52 Aligned_cols=74 Identities=20% Similarity=0.434 Sum_probs=67.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLR----NAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPG 148 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~----~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~ 148 (149)
+..+.++|||+|||+++++++|+ ++|++||.|.+|.+.+ +|+++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 35678899999999999999977 8999999999998875 7889999999999999999999999999999875
Q ss_pred C
Q 031988 149 L 149 (149)
Q Consensus 149 l 149 (149)
|
T Consensus 82 l 82 (282)
T 3pgw_A 82 M 82 (282)
T ss_pred E
Confidence 4
No 178
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.68 E-value=2e-16 Score=104.33 Aligned_cols=68 Identities=28% Similarity=0.506 Sum_probs=61.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|+ ++++++|+++|++||.|.++.+. +++|||||+|.+.++|++|+..|||..+.|+.|
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l 103 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQL 103 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 456789999996 69999999999999999999885 456999999999999999999999999999865
No 179
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.67 E-value=2.1e-16 Score=105.23 Aligned_cols=66 Identities=24% Similarity=0.443 Sum_probs=59.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceE-EEEEeCCHHHHHHHHHHhCCCccCC
Q 031988 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGF-AFLRYATEEESRRAIEGMHGKSRAS 146 (149)
Q Consensus 76 ~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~-~fV~f~~~~~a~~Al~~l~g~~~~~ 146 (149)
.-..|||+||++.+++++|+++|++||.|.+|.+..+. +|| |||+|.+.++|+.|++.|||..|.|
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 33478899999999999999999999999999887642 587 9999999999999999999999976
No 180
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.67 E-value=1.4e-16 Score=113.95 Aligned_cols=72 Identities=11% Similarity=0.229 Sum_probs=66.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCe--EEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCC
Q 031988 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQL--VEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPG 148 (149)
Q Consensus 75 ~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i--~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~ 148 (149)
.+..+|||+|||+.+++++|+++|++||.| .++.+..+. |+.+|+|||+|.+.++|.+||..|||+.|.|+.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 456799999999999999999999999999 899988875 566799999999999999999999999999874
No 181
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.66 E-value=4.7e-16 Score=115.55 Aligned_cols=76 Identities=21% Similarity=0.364 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+..|||..++|+.|
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 167 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTL 167 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3456799999999999999999999999999999999999899999999999999999999999999999998754
No 182
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.65 E-value=4.1e-16 Score=112.92 Aligned_cols=71 Identities=21% Similarity=0.334 Sum_probs=66.1
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSF-RTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~-~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
..+.++|||+|||+ .+++++|+++|++||.|.++.++.++ +|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 102 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPI 102 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 45678999999999 99999999999999999999998875 6999999999999999999999999998865
No 183
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.64 E-value=6.3e-16 Score=112.77 Aligned_cols=65 Identities=18% Similarity=0.364 Sum_probs=60.8
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCcc
Q 031988 74 CQPKTRLFVSGLSFRT---------SEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSR 144 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~---------~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~ 144 (149)
....++|||+||+..+ ++++|+.+|++||.|.+|.|+.+ +|||||+|.+.++|+.|++.|+|+.|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 5567899999999998 69999999999999999999865 49999999999999999999999999
No 184
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.63 E-value=7.8e-16 Score=114.35 Aligned_cols=76 Identities=24% Similarity=0.234 Sum_probs=70.5
Q ss_pred CCCCCCeEEEcCCCCCC-CHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRT-SEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~-~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
.....++|||+|||+.+ ++++|+++|++||.|.++.++.+. +|+++|+|||+|.+.++|.+|+..|||..++|+.|
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 256 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHL 256 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEE
Confidence 34567899999999995 999999999999999999999987 89999999999999999999999999999998764
No 185
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.63 E-value=5.7e-16 Score=107.20 Aligned_cols=71 Identities=20% Similarity=0.438 Sum_probs=64.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....++|||+|||+.+++++|+++|++||.|..+ ..+|+++|||||+|.+.++|.+|++.|||..++|+.|
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 166 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 166 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 4456899999999999999999999999988766 4589999999999999999999999999999998754
No 186
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.62 E-value=7.8e-16 Score=108.68 Aligned_cols=69 Identities=22% Similarity=0.354 Sum_probs=64.3
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 76 PKTRLFVSGLSF-RTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 76 ~~~~l~v~nL~~-~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
.+++|||+|||+ .+++++|+++|++||.|.++.++.++ +|||||+|.+.++|..|++.|||..+.|+.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l 71 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPI 71 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEE
Confidence 357999999999 99999999999999999999998875 6899999999999999999999999999865
No 187
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.62 E-value=1.4e-15 Score=112.16 Aligned_cols=70 Identities=29% Similarity=0.478 Sum_probs=64.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....++|||+|||+++++++|+++|++||.|..+.+.++ +|||||+|.+.++|..|+..|||..+.|+.|
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l 88 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPL 88 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCcee
Confidence 456679999999999999999999999999999988654 4999999999999999999999999988754
No 188
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.62 E-value=5.7e-16 Score=115.50 Aligned_cols=75 Identities=20% Similarity=0.387 Sum_probs=68.2
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEeecCC-CCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 74 CQPKTRLFVSGLSFR-TSEDSLRNAFQGFGQLVEVNLVMDKI-ANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~-~~~~~l~~~F~~~G~i~~~~i~~~~~-~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
....++|||+|||+. +++++|+++|++||.|..+.++.+.. ||+++|||||+|.+.++|.+|+ .|||..|+|+.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i 283 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREI 283 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEE
Confidence 456789999999999 99999999999999999999999875 5999999999999999999999 999999998754
No 189
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.7e-16 Score=98.74 Aligned_cols=56 Identities=25% Similarity=0.453 Sum_probs=50.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHH
Q 031988 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRA 135 (149)
Q Consensus 75 ~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~A 135 (149)
...++|||+|||+++++++|+++|++||.|.++.++.+ ++|||||+|.+.++|++|
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHH
Confidence 45689999999999999999999999999999998765 579999999999999754
No 190
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.61 E-value=3.5e-15 Score=110.74 Aligned_cols=72 Identities=25% Similarity=0.378 Sum_probs=65.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccC-CCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRA-SPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~-~~~l 149 (149)
...+.++|||+|||..+++++|+++|++||.|.++.++.++ +|||||+|.+.++|.+|++.|||..++ |+.|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 275 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAM 275 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEE
Confidence 34467899999999999999999999999999999998754 489999999999999999999999998 7754
No 191
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.60 E-value=9.7e-17 Score=111.14 Aligned_cols=75 Identities=19% Similarity=0.279 Sum_probs=65.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...+.++|||+|||+++++++|+++|..||.+.. .++.+..+|+++|||||+|.+.++|.+|++ |||..+.|+.|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l 83 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEI 83 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEE
Confidence 4677889999999999999999999999998766 344555689999999999999999999995 99999988753
No 192
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.59 E-value=4e-16 Score=100.30 Aligned_cols=67 Identities=15% Similarity=0.381 Sum_probs=59.2
Q ss_pred EcCCCCCCCHHHHHHHH------------hcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 82 VSGLSFRTSEDSLRNAF------------QGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 82 v~nL~~~~~~~~l~~~F------------~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
+.||++.+++++|++.| ++||.|.++.|+++. +|+++|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777777887777666 999999999999987 58999999999999999999999999999999865
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.59 E-value=6.2e-15 Score=108.70 Aligned_cols=93 Identities=26% Similarity=0.309 Sum_probs=75.5
Q ss_pred cCCCCCCCCCcccCCCCCCCC----------------CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCC
Q 031988 51 QGRGRGACFPLACLPPSPHSL----------------STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKI 114 (149)
Q Consensus 51 ~~r~~~~~~~~~~~~~~~~~~----------------~~~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~ 114 (149)
-.++++++++.+.....+..+ .-..+..+|||+|||+.+++++|+++|++||.|.++.++.|.
T Consensus 54 i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~- 132 (261)
T 3sde_A 54 INRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD- 132 (261)
T ss_dssp EETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-
T ss_pred EeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-
Confidence 345677888777654332111 123456799999999999999999999999999999999995
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHhC-CCcc
Q 031988 115 ANRPRGFAFLRYATEEESRRAIEGMH-GKSR 144 (149)
Q Consensus 115 ~g~~~g~~fV~f~~~~~a~~Al~~l~-g~~~ 144 (149)
+|+++|||||+|.+.++|.+|+..|| |..+
T Consensus 133 ~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 163 (261)
T 3sde_A 133 RGRATGKGFVEFAAKPPARKALERCGDGAFL 163 (261)
T ss_dssp TSCEEEEEEEEESSHHHHHHHHHHHHHSCEE
T ss_pred CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEE
Confidence 99999999999999999999999994 4443
No 194
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.59 E-value=3.8e-15 Score=95.87 Aligned_cols=75 Identities=13% Similarity=0.266 Sum_probs=64.2
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHHHhcCCCeEEEEEeecCCC--CCCceEEEEEeCCHHHHHHHHHHhCCC
Q 031988 75 QPKTRLFVSGL--SFRTS--------EDSLRNAFQGFGQLVEVNLVMDKIA--NRPRGFAFLRYATEEESRRAIEGMHGK 142 (149)
Q Consensus 75 ~~~~~l~v~nL--~~~~~--------~~~l~~~F~~~G~i~~~~i~~~~~~--g~~~g~~fV~f~~~~~a~~Al~~l~g~ 142 (149)
.+++.|.+.|+ +..+. +++|++.|++||.|.++.|++++.+ ++++|++||+|.+.++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46678999998 33333 3689999999999999999988754 478999999999999999999999999
Q ss_pred ccCCCCC
Q 031988 143 SRASPGL 149 (149)
Q Consensus 143 ~~~~~~l 149 (149)
.++|+.|
T Consensus 83 ~f~GR~i 89 (105)
T 3v4m_A 83 KFANRVV 89 (105)
T ss_dssp EETTEEC
T ss_pred EeCCCEE
Confidence 9999865
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.58 E-value=1.3e-14 Score=102.43 Aligned_cols=71 Identities=21% Similarity=0.349 Sum_probs=64.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccC-CCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFG-QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRA-SPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G-~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~-~~~l 149 (149)
..+.++|||+|||..+++++|+++|++|| .|..+.+..+. +|+|||+|.+.++|.+|+..|||..++ |+.|
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 189 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHL 189 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeE
Confidence 45678999999999999999999999999 99999986642 599999999999999999999999999 8765
No 196
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.3e-14 Score=94.11 Aligned_cols=72 Identities=19% Similarity=0.377 Sum_probs=61.4
Q ss_pred CCCCCeEEEcCCCCCCC-----------HHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCC
Q 031988 74 CQPKTRLFVSGLSFRTS-----------EDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGK 142 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~-----------~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~ 142 (149)
+.+.++|+|.||..... +++|+++|++||.|.++.| .++ .++|||||+|.+.++|.+|++.|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 55678999999954432 5799999999999999955 554 37899999999999999999999999
Q ss_pred ccCCCCC
Q 031988 143 SRASPGL 149 (149)
Q Consensus 143 ~~~~~~l 149 (149)
.+.|+.|
T Consensus 88 ~~~gr~l 94 (112)
T 2dit_A 88 WFGGRQI 94 (112)
T ss_dssp EETTEEC
T ss_pred EECCcEE
Confidence 9998765
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.57 E-value=4.6e-15 Score=110.56 Aligned_cols=74 Identities=18% Similarity=0.338 Sum_probs=63.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFG-QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 75 ~~~~~l~v~nL~~~~~~~~l~~~F~~~G-~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
...++|||+|||+.+++++|+++|.+|| .|..+.++.++ .|+++|||||+|.+.++|..|+..|||..+.|+.|
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 189 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTL 189 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3568999999999999999999999999 99999999987 48899999999999999999999999999988754
No 198
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.56 E-value=7.6e-15 Score=112.18 Aligned_cols=66 Identities=26% Similarity=0.360 Sum_probs=59.5
Q ss_pred CCCCCeEEEcC--CCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccC
Q 031988 74 CQPKTRLFVSG--LSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRA 145 (149)
Q Consensus 74 ~~~~~~l~v~n--L~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~ 145 (149)
..+..+|||+| |+..+++++|+++|++||.|.+|.+.. +||||||+|.+.++|++|++.|||+.+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 67778999999 578999999999999999999987654 3599999999999999999999999884
No 199
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.56 E-value=1.1e-14 Score=95.61 Aligned_cols=74 Identities=16% Similarity=0.228 Sum_probs=64.2
Q ss_pred CCCeEEEcCCCC--CC---CHHHHHHHHhcCCCeEEEEEeecCC----CCCCceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 031988 76 PKTRLFVSGLSF--RT---SEDSLRNAFQGFGQLVEVNLVMDKI----ANRPRGFAFLRYATEEESRRAIEGMHGKSRAS 146 (149)
Q Consensus 76 ~~~~l~v~nL~~--~~---~~~~l~~~F~~~G~i~~~~i~~~~~----~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~ 146 (149)
++++|++.|+-. .+ -+++|++.|++||.|.+|.|+.++. +++++|++||+|.+.++|.+|++.|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567899999842 22 2589999999999999999999864 46788999999999999999999999999999
Q ss_pred CCC
Q 031988 147 PGL 149 (149)
Q Consensus 147 ~~l 149 (149)
+.|
T Consensus 99 R~i 101 (118)
T 3ue2_A 99 RKV 101 (118)
T ss_dssp EEC
T ss_pred cEE
Confidence 865
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.54 E-value=8.6e-15 Score=100.79 Aligned_cols=67 Identities=24% Similarity=0.515 Sum_probs=59.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcC----C-------CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCcc
Q 031988 76 PKTRLFVSGLSFRTSEDSLRNAFQGF----G-------QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSR 144 (149)
Q Consensus 76 ~~~~l~v~nL~~~~~~~~l~~~F~~~----G-------~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~ 144 (149)
+.++|||+|||+++++++|+++|++| | .|.++.+.. ++|||||+|.+.++|.+|+ .+||..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46799999999999999999999999 6 777776644 4599999999999999999 8999999
Q ss_pred CCCCC
Q 031988 145 ASPGL 149 (149)
Q Consensus 145 ~~~~l 149 (149)
.|+.|
T Consensus 76 ~g~~i 80 (172)
T 2g4b_A 76 QGQSL 80 (172)
T ss_dssp TTEEC
T ss_pred cCcee
Confidence 88754
No 201
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.54 E-value=4.4e-14 Score=102.20 Aligned_cols=71 Identities=21% Similarity=0.343 Sum_probs=64.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccC-CCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFG-QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRA-SPGL 149 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G-~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~-~~~l 149 (149)
..+.++|||+|||+.+++++|+++|++|| .|..+.++.+ .+|||||+|.+.++|.+|++.|||..++ |+.|
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l 220 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHL 220 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeE
Confidence 34578999999999999999999999999 9999998653 2599999999999999999999999998 8764
No 202
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.50 E-value=2e-14 Score=101.00 Aligned_cols=67 Identities=25% Similarity=0.543 Sum_probs=57.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcC----C-------CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCcc
Q 031988 76 PKTRLFVSGLSFRTSEDSLRNAFQGF----G-------QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSR 144 (149)
Q Consensus 76 ~~~~l~v~nL~~~~~~~~l~~~F~~~----G-------~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~ 144 (149)
..++|||+|||+++++++|+++|++| | .|.++.+ ++++|||||+|.+.++|++|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46799999999999999999999999 5 5666654 455699999999999999999 8999999
Q ss_pred CCCCC
Q 031988 145 ASPGL 149 (149)
Q Consensus 145 ~~~~l 149 (149)
.|+.|
T Consensus 76 ~g~~i 80 (198)
T 2yh0_A 76 QGQSL 80 (198)
T ss_dssp TTEEE
T ss_pred cCceE
Confidence 88643
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.3e-12 Score=82.03 Aligned_cols=55 Identities=22% Similarity=0.304 Sum_probs=47.5
Q ss_pred CCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCC
Q 031988 87 FRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPG 148 (149)
Q Consensus 87 ~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~ 148 (149)
..+++++|+++|++||.|.+|.|+ ++++|||||+|.+.++|+.|++.+++ +.++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~ 81 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNP 81 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSB
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCe
Confidence 468999999999999999999887 46789999999999999999998655 44543
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.40 E-value=1.1e-12 Score=85.37 Aligned_cols=71 Identities=11% Similarity=0.224 Sum_probs=58.7
Q ss_pred CCCCeEEEcCCCCCCC----------HHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCcc
Q 031988 75 QPKTRLFVSGLSFRTS----------EDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSR 144 (149)
Q Consensus 75 ~~~~~l~v~nL~~~~~----------~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~ 144 (149)
.+++.|.+.|+=..-. +++|++.|++||.|.++.|.++. ++|++||+|.+.++|.+|++.|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4566788888743222 25789999999999999886653 479999999999999999999999999
Q ss_pred CCCCC
Q 031988 145 ASPGL 149 (149)
Q Consensus 145 ~~~~l 149 (149)
+|+.|
T Consensus 81 ~GR~i 85 (114)
T 3s6e_A 81 AGKMI 85 (114)
T ss_dssp TTEEC
T ss_pred CCEEE
Confidence 99865
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=1e-11 Score=81.34 Aligned_cols=69 Identities=13% Similarity=0.098 Sum_probs=60.5
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCC-HHHHHHHHHHhC--CCccCCC
Q 031988 73 TCQPKTRLFVSGLSFR-TSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYAT-EEESRRAIEGMH--GKSRASP 147 (149)
Q Consensus 73 ~~~~~~~l~v~nL~~~-~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~-~~~a~~Al~~l~--g~~~~~~ 147 (149)
.-..+..|||+||+.. +++++|+++|++||.|..|.++.+. -.|||+|.+ .++|..|++.+| +..|.|.
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 3567889999999999 9999999999999999999998887 369999999 899999999994 5555553
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.15 E-value=1.2e-10 Score=83.58 Aligned_cols=60 Identities=18% Similarity=0.269 Sum_probs=54.0
Q ss_pred CHHHHHHHHhcCCCeEEEEEeecC----CCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 90 SEDSLRNAFQGFGQLVEVNLVMDK----IANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 90 ~~~~l~~~F~~~G~i~~~~i~~~~----~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
.+++|++.|++||.|.++.|+.+. .+++++|++||+|.+.++|.+|++.|||..++|+.|
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i 205 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKV 205 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEE
Confidence 457899999999999999998554 455899999999999999999999999999999975
No 207
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=1.4e-10 Score=71.87 Aligned_cols=67 Identities=19% Similarity=0.343 Sum_probs=55.7
Q ss_pred CCCCCeEEEcCCCC----CC-CH---HHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccC
Q 031988 74 CQPKTRLFVSGLSF----RT-SE---DSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRA 145 (149)
Q Consensus 74 ~~~~~~l~v~nL~~----~~-~~---~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~ 145 (149)
.++..||+|.-.+. +. ++ .+|.+.|.+||.|..++++.|+ +||+|.+.++|.+||. |||..++
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 45666888887652 23 32 5789999999999999998865 8999999999999998 9999999
Q ss_pred CCCC
Q 031988 146 SPGL 149 (149)
Q Consensus 146 ~~~l 149 (149)
|+.|
T Consensus 75 Gr~L 78 (91)
T 2dnr_A 75 NRTI 78 (91)
T ss_dssp TEEE
T ss_pred CeEE
Confidence 9864
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=5.1e-10 Score=69.70 Aligned_cols=67 Identities=13% Similarity=0.221 Sum_probs=56.9
Q ss_pred CCCCCeEEEcCCCCC------CCH---HHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCcc
Q 031988 74 CQPKTRLFVSGLSFR------TSE---DSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSR 144 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~------~~~---~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~ 144 (149)
.++..||+|.-++.. .++ .+|.+.|.+||.|..++++.|+ +||+|.+.++|.+||. |||..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 566779999888643 332 4688999999999999999875 9999999999999998 999999
Q ss_pred CCCCC
Q 031988 145 ASPGL 149 (149)
Q Consensus 145 ~~~~l 149 (149)
+|+.|
T Consensus 83 ~Gr~L 87 (95)
T 1ufw_A 83 KGRAV 87 (95)
T ss_dssp TTEEE
T ss_pred CCeEE
Confidence 99864
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.74 E-value=2.5e-08 Score=63.51 Aligned_cols=70 Identities=14% Similarity=0.083 Sum_probs=64.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcC-----CCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGF-----GQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPG 148 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~-----G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~ 148 (149)
.+..++|-+-|||..++++-|+.+.+++ |.+..+.+..|. |-|+|+|.+...|-+|.-.|+|.+|.|+.
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3456789999999999999999999999 999999999998 89999999999999999999999999875
Q ss_pred C
Q 031988 149 L 149 (149)
Q Consensus 149 l 149 (149)
|
T Consensus 92 L 92 (117)
T 2l9w_A 92 I 92 (117)
T ss_dssp E
T ss_pred E
Confidence 4
No 210
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.97 E-value=8.1e-05 Score=46.01 Aligned_cols=69 Identities=9% Similarity=0.122 Sum_probs=57.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCC--CceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 031988 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANR--PRGFAFLRYATEEESRRAIEGMHGKSRAS 146 (149)
Q Consensus 78 ~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~--~~g~~fV~f~~~~~a~~Al~~l~g~~~~~ 146 (149)
.+|.|++||+.++|+++.+.+.....+.....+..+.+.+ .-+-|||.|.+.+++..-.+.++|+.+-+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 4789999999999999999999998877766665543332 33789999999999999999999998754
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.62 E-value=0.0001 Score=46.51 Aligned_cols=69 Identities=7% Similarity=0.042 Sum_probs=55.6
Q ss_pred CCCCeEEEcCCCCCC-C----HHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031988 75 QPKTRLFVSGLSFRT-S----EDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRASPGL 149 (149)
Q Consensus 75 ~~~~~l~v~nL~~~~-~----~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~~l 149 (149)
.-+++|+|.||+..+ . .+.++++|..|+++......+.- .-.-|.|.+.++|.+|-..|++..+.|+.|
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCcee
Confidence 345689999998864 2 25789999999998887666644 356799999999999999999999988643
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.62 E-value=0.00055 Score=43.03 Aligned_cols=57 Identities=14% Similarity=0.173 Sum_probs=47.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhc-C----CCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHH
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQG-F----GQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~-~----G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~ 138 (149)
.....+|.|.|||+.++++.|+-.|+. - |+|..++... +-|+|+|.+.+.|++.|+.
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC
Confidence 345679999999999999999999987 2 5588776533 6789999999999999875
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.60 E-value=0.00043 Score=43.09 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=46.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHh
Q 031988 77 KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139 (149)
Q Consensus 77 ~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l 139 (149)
...+++ +.|+.+-..||.++|+.||.| .|+++.| --|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhc
Confidence 345666 999999999999999999954 4778777 48999999999999999866
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.51 E-value=0.00039 Score=44.92 Aligned_cols=65 Identities=15% Similarity=0.297 Sum_probs=52.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 031988 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKSRAS 146 (149)
Q Consensus 74 ~~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~~~~~ 146 (149)
....+-|.|-+.|+.. .+.+...|++||.|.+..... ....-.|.|.+..+|++||. .||..+++
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g 85 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGE 85 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETT
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecC
Confidence 4456788899999985 556667899999999876521 23789999999999999998 79998875
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.38 E-value=0.00048 Score=42.98 Aligned_cols=53 Identities=21% Similarity=0.322 Sum_probs=46.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhC
Q 031988 79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMH 140 (149)
Q Consensus 79 ~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~ 140 (149)
.+++ +.|+.+-..||..+|++|| -..|+++.| --|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 4556 9999999999999999999 456888887 489999999999999998764
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.04 E-value=0.00095 Score=41.57 Aligned_cols=72 Identities=6% Similarity=0.061 Sum_probs=52.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCC-C-CceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031988 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIAN-R-PRGFAFLRYATEEESRRAIEGMHGKSRASP 147 (149)
Q Consensus 76 ~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g-~-~~g~~fV~f~~~~~a~~Al~~l~g~~~~~~ 147 (149)
.+-+|.|+.||+.++|+++.+.+...-.+.....+..+.+- . .-.-|||.|.+.+++..-.+.++|+.+-+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 34589999999999999988887775554332222222121 1 226799999999999999999999987553
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.39 E-value=0.002 Score=50.91 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=42.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHH
Q 031988 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137 (149)
Q Consensus 75 ~~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~ 137 (149)
+..+.|+|. .|..+++.+|.+.|.+||.|.++.+-.++ | -|+.|+|.+.+++..++.
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 344689997 79999999999999999999998766544 3 799999999999887654
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.86 E-value=0.0044 Score=40.61 Aligned_cols=68 Identities=15% Similarity=0.225 Sum_probs=47.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEE-EEEeecC--------CCC-----CCceEEEEEeCCHHHHHHHHHHhCCCc
Q 031988 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVE-VNLVMDK--------IAN-----RPRGFAFLRYATEEESRRAIEGMHGKS 143 (149)
Q Consensus 78 ~~l~v~nL~~~~~~~~l~~~F~~~G~i~~-~~i~~~~--------~~g-----~~~g~~fV~f~~~~~a~~Al~~l~g~~ 143 (149)
.-|.|-+.|++... .+-+.|++||.|.+ .....+. ... ...+.-.|+|.+..+|.+||. .||..
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 46778889887555 45568999999866 2111100 000 124677999999999999997 89999
Q ss_pred cCCC
Q 031988 144 RASP 147 (149)
Q Consensus 144 ~~~~ 147 (149)
|+|-
T Consensus 86 i~G~ 89 (132)
T 3p3d_A 86 FNGV 89 (132)
T ss_dssp ETTE
T ss_pred eCcE
Confidence 8874
No 219
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.08 E-value=0.39 Score=38.33 Aligned_cols=55 Identities=20% Similarity=0.340 Sum_probs=45.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhC
Q 031988 77 KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMH 140 (149)
Q Consensus 77 ~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~ 140 (149)
...++|+ .|..+...+|.+.|+.||.+ +|.++.+ ..|||.|.+.+.|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 3466676 88899999999999999954 5666555 479999999999999999884
No 220
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=58.30 E-value=29 Score=21.28 Aligned_cols=47 Identities=17% Similarity=0.375 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHhc-CCC---eEEE-EEeecCCCCCCceEEEEEeCCHHHHHH
Q 031988 87 FRTSEDSLRNAFQG-FGQ---LVEV-NLVMDKIANRPRGFAFLRYATEEESRR 134 (149)
Q Consensus 87 ~~~~~~~l~~~F~~-~G~---i~~~-~i~~~~~~g~~~g~~fV~f~~~~~a~~ 134 (149)
...+..+|++.+.+ |+. +..| .+......|++.|||.| |.+.+.|..
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk 79 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQ 79 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 55778888877765 553 3333 34444456677888877 677766653
No 221
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=53.26 E-value=38 Score=21.02 Aligned_cols=47 Identities=9% Similarity=0.100 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHhc-CCC---eEEE-EEeecCCCCCCceEEEEEeCCHHHHHH
Q 031988 87 FRTSEDSLRNAFQG-FGQ---LVEV-NLVMDKIANRPRGFAFLRYATEEESRR 134 (149)
Q Consensus 87 ~~~~~~~l~~~F~~-~G~---i~~~-~i~~~~~~g~~~g~~fV~f~~~~~a~~ 134 (149)
...+..+|++-+.+ |+. +..| .+......|++.|||.| |.+.+.|..
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 35678888877765 554 2333 34444456678888877 677776653
No 222
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=48.86 E-value=44 Score=20.52 Aligned_cols=46 Identities=15% Similarity=0.139 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHhc-CCC---eEEE-EEeecCCCCCCceEEEEEeCCHHHHH
Q 031988 87 FRTSEDSLRNAFQG-FGQ---LVEV-NLVMDKIANRPRGFAFLRYATEEESR 133 (149)
Q Consensus 87 ~~~~~~~l~~~F~~-~G~---i~~~-~i~~~~~~g~~~g~~fV~f~~~~~a~ 133 (149)
...+..+|++.+.+ |+. +..| .+......|++.|||.| |.+.+.|.
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~ak 78 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMA 78 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHH
Confidence 56778888876665 443 3333 34455556678888877 67777664
No 223
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=46.59 E-value=46 Score=20.08 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=45.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHh
Q 031988 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139 (149)
Q Consensus 76 ~~~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l 139 (149)
..+-+-+-|+|..+-..++--...-.|---.|..+. |-|.+.|.+.++..-|+..|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 455677889999999988877777788766666544 77999999999999999877
No 224
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=44.44 E-value=71 Score=21.59 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=37.6
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHH--hcCCCeEEEEEeecCCCCCCceEEEEEeC-CHHHHHHHHH
Q 031988 79 RLFVSGLSF-R--------TSEDSLRNAF--QGFGQLVEVNLVMDKIANRPRGFAFLRYA-TEEESRRAIE 137 (149)
Q Consensus 79 ~l~v~nL~~-~--------~~~~~l~~~F--~~~G~i~~~~i~~~~~~g~~~g~~fV~f~-~~~~a~~Al~ 137 (149)
++.|-|+|. . .+..+|++.| ..|.+++ +....++ ..+.|++.|.|. +..-...|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 566778776 1 3346888866 8999876 4444444 346799999997 5555555654
No 225
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=41.24 E-value=53 Score=21.87 Aligned_cols=37 Identities=14% Similarity=0.193 Sum_probs=29.3
Q ss_pred CCHHHHHHHHhcCCCeE---EEEEeecCCCCCCceEEEEE
Q 031988 89 TSEDSLRNAFQGFGQLV---EVNLVMDKIANRPRGFAFLR 125 (149)
Q Consensus 89 ~~~~~l~~~F~~~G~i~---~~~i~~~~~~g~~~g~~fV~ 125 (149)
.++++|+++-.+.|.+. +..+..|..+|+.+.+||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 58899999999999863 45666664489999888865
No 226
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=38.34 E-value=79 Score=20.83 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHhc-CCC---eEEE-EEeecCCCCCCceEEEEEeCCHHHHH
Q 031988 87 FRTSEDSLRNAFQG-FGQ---LVEV-NLVMDKIANRPRGFAFLRYATEEESR 133 (149)
Q Consensus 87 ~~~~~~~l~~~F~~-~G~---i~~~-~i~~~~~~g~~~g~~fV~f~~~~~a~ 133 (149)
...+..+|++-+.. |+. +..| .+......|++.|||.| |.+.+.|.
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aK 81 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLL 81 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHH
Confidence 45778888877765 554 2233 33344445677888888 67776665
No 227
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=37.58 E-value=82 Score=20.38 Aligned_cols=46 Identities=22% Similarity=0.388 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHhc-CCC---eEEE-EEeecCCCCCCceEEEEEeCCHHHHH
Q 031988 87 FRTSEDSLRNAFQG-FGQ---LVEV-NLVMDKIANRPRGFAFLRYATEEESR 133 (149)
Q Consensus 87 ~~~~~~~l~~~F~~-~G~---i~~~-~i~~~~~~g~~~g~~fV~f~~~~~a~ 133 (149)
...+..+|++-+.. |+. +..| .+......|++.|||.| |.+.+.|.
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~ak 83 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAK 83 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHH
Confidence 35788999988875 664 2333 34444456677888887 67777665
No 228
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=35.70 E-value=61 Score=19.27 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=19.1
Q ss_pred CeEEEEEeecCCCCCCceEEEEEeCC
Q 031988 103 QLVEVNLVMDKIANRPRGFAFLRYAT 128 (149)
Q Consensus 103 ~i~~~~i~~~~~~g~~~g~~fV~f~~ 128 (149)
+|+++++.+-...|+-++||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 46777776666567888888888865
No 229
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=29.93 E-value=82 Score=19.23 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=18.7
Q ss_pred CeEEEEEeecCCCCCCceEEEEEeCC
Q 031988 103 QLVEVNLVMDKIANRPRGFAFLRYAT 128 (149)
Q Consensus 103 ~i~~~~i~~~~~~g~~~g~~fV~f~~ 128 (149)
.|.++++.+-...|+-++||=|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 46677776665567788888888865
No 230
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=29.86 E-value=84 Score=19.39 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=18.1
Q ss_pred CeEEEEEeecCCCCCCceEEEEEeCC
Q 031988 103 QLVEVNLVMDKIANRPRGFAFLRYAT 128 (149)
Q Consensus 103 ~i~~~~i~~~~~~g~~~g~~fV~f~~ 128 (149)
+|+++++.+-...|+-++||=|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 46667666655567778888888765
No 231
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=29.74 E-value=39 Score=20.07 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=25.7
Q ss_pred eEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCC
Q 031988 104 LVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGK 142 (149)
Q Consensus 104 i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g~ 142 (149)
|.++.++. ...||-||++...++...+++...|.
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCCc
Confidence 66665543 25699999999999888888776654
No 232
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=29.47 E-value=43 Score=20.39 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHHhc-CCC---eEEE-EEeecCCCCCCceEEEEEeCCHHHHH
Q 031988 87 FRTSEDSLRNAFQG-FGQ---LVEV-NLVMDKIANRPRGFAFLRYATEEESR 133 (149)
Q Consensus 87 ~~~~~~~l~~~F~~-~G~---i~~~-~i~~~~~~g~~~g~~fV~f~~~~~a~ 133 (149)
...+..+|++.+.+ |+. +..| .+......|++.|||.| |.+.+.|.
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~k 79 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAM 79 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHH
Confidence 35677777776654 443 2222 12223334567788877 55554443
No 233
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=28.93 E-value=56 Score=23.49 Aligned_cols=33 Identities=12% Similarity=0.365 Sum_probs=26.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEee
Q 031988 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVM 111 (149)
Q Consensus 78 ~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~ 111 (149)
..+.|+|||+.++...|..++.. +.+....++.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 46789999999999999999987 6666654443
No 234
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=28.79 E-value=73 Score=17.08 Aligned_cols=54 Identities=15% Similarity=0.144 Sum_probs=40.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHH
Q 031988 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138 (149)
Q Consensus 78 ~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~ 138 (149)
.++.|.++.=.-=...++..+.. ..|..+.+-... +-+-|.|.+.+....+++.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~------~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE------AVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE------EEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC------CEEEEEECCHHHHHHHHHH
Confidence 36778888766666788999999 888888775543 6777888866777777764
No 235
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=27.72 E-value=6.5 Score=25.93 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=14.6
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeC
Q 031988 92 DSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYA 127 (149)
Q Consensus 92 ~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~ 127 (149)
+++.++|...|.|+.. .+ .+|||||.-.
T Consensus 2 ~~~~~l~~~~G~Vkwf---n~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWF---NV-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEE---ET-----TTTEEEEEEE
T ss_pred CcccccccceeEEEEE---EC-----CCCeeEEeeC
Confidence 3445556666665543 21 2499999865
No 236
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=27.13 E-value=42 Score=20.67 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=25.4
Q ss_pred CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCC
Q 031988 103 QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHG 141 (149)
Q Consensus 103 ~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l~g 141 (149)
.|.++-.+. ..+||-|||=.+..++..|++.+.+
T Consensus 40 ~I~Si~~~~-----~lkGyIyVEA~~~~~V~~ai~gi~~ 73 (106)
T 3h7h_B 40 QIKSVVAPE-----HVKGYIYVEAYKQTHVKQAIEGVGN 73 (106)
T ss_dssp CCCEEEECT-----TCCSEEEEEESSHHHHHHHHTTCGG
T ss_pred ceEEEEecC-----CCceEEEEEeCCHHHHHHHHhcccc
Confidence 366664432 2469999999999999999976643
No 237
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=25.94 E-value=39 Score=15.01 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=10.5
Q ss_pred CHHHHHHHHhcCC
Q 031988 90 SEDSLRNAFQGFG 102 (149)
Q Consensus 90 ~~~~l~~~F~~~G 102 (149)
++.+|+++.++|-
T Consensus 14 nekelrdfiekfk 26 (28)
T 1fme_A 14 NEKELRDFIEKFK 26 (28)
T ss_dssp CHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHhc
Confidence 6788999988873
No 238
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=22.76 E-value=32 Score=24.85 Aligned_cols=34 Identities=9% Similarity=0.164 Sum_probs=26.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEee
Q 031988 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVM 111 (149)
Q Consensus 78 ~~l~v~nL~~~~~~~~l~~~F~~~G~i~~~~i~~ 111 (149)
....|+|||+.++...|..+++....+..+.++.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 4578999999999999999998655566554443
No 239
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=21.97 E-value=2.3e+02 Score=20.49 Aligned_cols=41 Identities=10% Similarity=0.287 Sum_probs=30.5
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHh
Q 031988 94 LRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139 (149)
Q Consensus 94 l~~~F~~~G~i~~~~i~~~~~~g~~~g~~fV~f~~~~~a~~Al~~l 139 (149)
+++.|+.+|--.-. . ..|...|+-|+-+-+.+.|+..++.|
T Consensus 47 ~~~~~~~~~~~~~~---~--~~ga~gg~~~~~~~~~~~a~~~~~~l 87 (291)
T 1o57_A 47 IKQTFEQQGIGTLL---T--VPGAAGGVKYIPKMKQAEAEEFVQTL 87 (291)
T ss_dssp HHHHHHHTTSEEEE---E--ECSTTCEEEEEECCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEE---E--ecCCCCceEEcccCCHHHHHHHHHHH
Confidence 56788887653211 1 26888899999999999999888654
Done!